Data source PGSC_DM_v3.4
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Name
PGSC_DM_v3.4
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Type
genome_annotation_set
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Organism
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Alternative name
not recorded
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Protocol
not recorded
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Contact
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Description
S. tuberosum Group Phureja DM1-3 516R44 (CIP801092) Genome Annotation v3.4 (based on v3 superscaffolds)
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Ontology terms
not recorded
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External links
not recorded
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PGSC_DM_v3.4_gene.fasta.zip (35Mb)
- Nucleotide sequences of all genes.
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PGSC_DM_v3.4_cds.fasta.zip (13Mb)
- Nucleotide sequences of all gene coding sequences (coding sequence only, i.e. no introns and no UTRs).
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PGSC_DM_v3.4_transcript.fasta.zip (23Mb)
- Nucleotide sequences of all transcript sequences (UTRs and exons).
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PGSC_DM_v3.4_pep.fasta.zip (7.7Mb)
- Amino acid sequences corresponding to all gene coding sequences.
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PGSC_DM_v3.4_gene.gff.zip (6.7Mb)
- Gene annotation in GFF3 format
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PGSC_DM_v3.4_cds_nonredundant.fasta.zip (13Mb)
- Alternative isoforms sometimes share the same coding sequence (CDS) which only appears once in this file.
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PGSC_DM_v3.4_pep_nonredundant.fasta.zip (7.6Mb)
- Amino acid sequences corresponding to nonredundant CDS file above.
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PGSC_DM_v3.4_gene_nonredundant.gff.zip (6.8Mb)
- Same as PGSC_DM_v3.4_gene.gff with additional flaggings for a) identical peptides originating from multiple genes b) identical peptides originating from alternative isoforms from the same gene.
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PGSC_DM_v3.4_transcript_representative.fasta.zip (15Mb)
- The transcript that produces the longest peptide sequence among all the alternative isoforms of a gene is selected as the representative transcript.
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PGSC_DM_v3.4_cds_representative.fasta.zip (12Mb)
- Coding sequences of the representative transcripts.
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PGSC_DM_v3.4_pep_representative.fasta.zip (7.5Mb)
- Amio acid sequences corrsponding to the representative CDS file above
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PGSC_DM_v3.4_gene_func.txt.zip (318Kb)
- Putative function of all genes. The putative function of the representative peptide is used if alternative isoforms exist.
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Files
Files
