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SGN uses the Generic Genome Browser (GBrowse), produced by the GMOD project, for providing browsable sequence annotations.

See the GBrowse online documentation for instructions on how to use GBrowse.

Available GBrowse Datasets 
ITAG1 Release: genomic annotations

ITAG Release 1 (2010-03-10) official annotations on the SL1.00 genome build by the International Tomato Annotation Group (ITAG).

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ITAG1 Release: protein annotations

ITAG Release 1 (2010-03-10) official annotations on the SL1.00 genome build by the International Tomato Annotation Group (ITAG).

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ITAG2 Release: genomic annotations

ITAG Release 2 (2010-11-28) official annotations on the SL2.31 genome build by the International Tomato Annotation Group (ITAG).

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ITAG2 Release: protein annotations

ITAG Release 2 (2010-11-28) official annotations on the SL2.31 genome build by the International Tomato Annotation Group (ITAG).

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ITAG2.3 Release: genomic annotations

ITAG Release 2.3 (2011-04-26) official annotations on the SL2.40 genome build by the International Tomato Annotation Group (ITAG).

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ITAG2.3 Release: protein annotations

ITAG Release 2.3 (2011-04-26) official annotations on the SL2.40 genome build by the International Tomato Annotation Group (ITAG).

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ITAG_devel snapshot: BAC-based genomic annotations

Annotations on BAC-based genomic sequences by the International Tomato Annotation Group (ITAG).

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ITAG_devel snapshot: BAC-based protein annotations

Annotations on protein sequences by the International Tomato Annotation Group (ITAG).

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PGSC DM 3.4 Release: genomic annotations

Potato Genome Sequencing Consortium (PGSC) DM v3.4 annotation of the DM v3 genome build.

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TAIR10: A. thaliana genomic annotations

Release 10 of the Arabidopsis genome annotation from The Arabidopsis Information Resource (TAIR).

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Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

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Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

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Tomato FPC (Sanger 2006)

Tomato fingerprint contigs, 2006 build (from the Sanger Centre).

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Tomato Preliminary BAC Annotations (SGN)

Preliminary automatic annotations on tomato BACs, no manual validation.

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