The SOL-100 sequencing project

The questions  
The aim  

The SOL community will create a common Solanaceae-based genomic framework that includes sequences and phenotypes of 100 genomes encompassing the phylogenetic diversity of the group. Specific objectives are to:

  1. Tie the available tomato, tobacco, potato and Asterid relatives coffee and Mimulus (monkey-flower) genome sequences to a common SOL physical and genetic map as well as other Asterid taxonomic groups, such as Antirrhinum, sweet potato and mint.
  2. Select 100 Solanaceae species and Asterid outgroups (SOL-100) that broadly span the evolutionary tree and reflect important human uses.
  3. Apply emerging novel genome sequencing technologies to SOL-100 and link the sequences to the common SOL physical and genetic maps.
  4. Genetically map simple and complex phenotypes affecting chemical, morphological, yield and fitness-related traits in the SOL-100 species.
  5. Construct bioinformatic vehicles to effectively access and utilize the information generated within SOL-100.
  6. Foster a broadly-based international community of interacting scientists committed to exploring and conserving natural biodiversity.
SOL-100 Organisms click on an organism name to see more details  

The tree below shows organisms that have been proposed for sequencing by the SOL-100 project. Highlighted species are already being sequenced.

Solanaceae Schizanthoideae Schizanthus Schizanthus pinnatus Nicotianoideae Anthocercideae Anthocercis Anthocercis littorea Symonanthus Symonanthus bancroftii Grammosolen Grammosolen dixonii Duboisia Duboisia hopwoodii Anthotroche Anthotroche pannosa Nicotianeae Nicotiana Nicotiana attenuata Nicotiana tabacum Nicotiana benthamiana Nicotiana longiflora Nicotiana sylvestris Solanoideae Mandragoreae Mandragora Mandragora officinarum Mandragora caulescens Lycieae Grabowskia Grabowskia boerhaviifolia Lycium Lycium americanum Lycium horridum Lycium barbarum Phrodus Phrodus microphyllus Solanoideae incertae sedis Latua Latua pubiflora Nicandreae Nicandra Nicandra physalodes Exodeconus Exodeconus miersii Juanulloeae Schultesianthus Schultesianthus leucanthus Dyssochroma Dyssochroma viridiflora Markea Markea ulei Capsiceae Capsicum Capsicum annuum Capsicum pubescens Lycianthes Lycianthes moziniana Lycianthes biflora Lycianthes multiflora Solaneae Solanum Solanum aethiopicum Solanum torvum Solanum nigrum Solanum erianthum Solanum tuberosum Solanum americanum Solanum laxum Lycopersicon Solanum pimpinellifolium Solanum pennellii Solanum peruvianum Solanum lycopersicum Solanum dulcamara Solanum melongena Solanum galapagense Jaltomata Jaltomata procumbens Datureae Datura Datura metel Datura stramonium Protoschwenkia Protoschwenkia mandonii Brugmansia Brugmansia candida Jaboroseae Discopodium Discopodium penninervium Jaborosa Jaborosa integrifolia Jaborosa sativa Physaleae Tubocapsicum Tubocapsicum anomalum Dunalia Dunalia solanacea Withania Withania frutescens Withania somnifera Iochroma Iochroma australe Iochroma fuchsioides Saracha Saracha punctata Aureliana Aureliana fasciculata Acnistus Acnistus arborescens Witheringia Witheringia solanacea Cuatresia Cuatresia riparia Salpichroa Salpichroa origanifolia Chamaesaracha Chamaesaracha coronopus Athenaea Athenaea sp. Bohs 91 Physalis Physalis alkekengi Physalis peruviana Physalis ixocarpa Hyoscyameae Physochlaina Physochlaina orientalis Atropa Atropa belladonna Anisodus Anisodus luridus Hyoscyamus Hyoscyamus niger Przewalskia Przewalskia tangutica Scopolia Scopolia carniolica Solandreae Juanulloa Juanulloa mexicana Solandra Solandra brachycalyx Benthamiellieae Combera Combera paradoxa Pantacantha Pantacantha ameghinoi Nolaneae Nolana Nolana humifusa Nolana galapagensis Petunioideae Nierembergia Nierembergia scoparia Calibrachoa Calibrachoa parviflora Brunfelsia Brunfelsia americana Brunfelsia uniflora Petunia Petunia axillaris Petunia integrifolia Petunia integrifolia subsp. inflata Petunia x hybrida Fabiana Fabiana imbricata Goetzeoideae Goetzea Goetzea elegans Solanaceae incertae sedis Sclerophylax Sclerophylax sp. Nee and Bohs 50857 Duckeodendron Duckeodendron cestroides Schwenckioideae Schwenckia Schwenckia americana Cestroideae Salpiglossideae Salpiglossis Salpiglossis sinuata Cestreae Metternichia Metternichia principis Cestrum Cestrum elegans Cestrum nocturnum Vestia Vestia foetida Sessea Sessea corymbiflora Tsoala Tsoala tubiflora Browallieae Browallia Browallia americana Streptosolen Streptosolen jamesonii Nothocestrum Nothocestrum latifolium
Who are we?  

The International SOL Genome Project (SOL) is a "virtual umbrella" organization for promoting, coordinating and actively seeking additional scientists, countries and funding agencies to participate in an expedition to understand, utilize and conserve natural biodiversity (see http://solgenomics.net/solanaceae-project/). SOL includes scientists from more than 30 countries that are united and excited about the sustainable and equitable use of natural biodiversity in biological research, plant breeding and conservation of these resources for the future. The SOL community has sequenced both the tomato genome and the potato genome through grants from national funding agencies as well as international collaborative projects.

Mathilde Causse, Jeanne Jacobs, Glenn Bryan, Harry Klee, Sanwen Huan, and René Klein Lankhorst
Submit genome to SGN 
If you are sequencing a SOL-100 genome, please submit the genome to SGN.

Submission to SGN requires prior submission to Genbank and a Genbank Project ID. Please contact Brian Smith-White at Genbank or SGN for more information.
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