Please proceed with your QTL analysis of your trait of interest.
The default parameters for QTL analysis are
displayed on the legend of the analysis output.

Guideline

QTL model:	Single-QTL Scan	QTL mapping method:	Marker Regression Maximum Likelihood Haley-Knott Regression Multiple Imputation
QTL genotype probablity method:	Calculate Simulate	QTL genotype probability significance level:	0.001 0.05 0.1
Genome scan size (cM):	zero 1 2.5 5 10	No. of imputations:	5 10 15 20
No. of permutations:	None 100 1000	Significance level of permutation test:	0.05 0.001 0.1