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Secretom Project Publications

Publications33 publications 
  • Sørensen, I. and Rose, J.K.C. (2010) Plant cell walls. In: McGraw-Hill 2010 Yearbook of Science & Technology (Pub. McGraw-Hill Professional (in press)).
  • Matas, A.J., Fei, Z., Giovannoni, J.J. and Rose, J.K.C. (2010) Developments in tomato transcriptomics. In: Genetics, Genomics and Breeding in Fruits and Vegetable Crops (Eds. B. Leidl, A. Slade, S. Hurst, J.A. Labate, J.R. Stommel). Pub. Science Publishers, New Hampshire, USA. (in press)
  • Yeats, T.H., Howe, K.J., Matas, A.J., Buda, G.J., Thannhauser, T.W. and Rose, J.K.C. (2010) Mining the tomato fruit cuticular and epidermal cell wall proteome for proteins associated with cuticle biogenesis. Journal of Experimental Botany 61: 3759-3771.
  • Matas, A.J., Agustí, J., Tadeo, F.R., Talón, M. and Rose, J.K.C. (2010) Tissue specific transcriptome profiling of the citrus fruit epidermis and subepidermis using laser capture microdissection. Journal of Experimental Botany 61: 3321-3330.
  • Rugkong A., Rose, J.K.C., Lee, S.-J., Giovannoni, J.J., O'Neill, M. and Watkins, C.B. (2010) Cell wall metabolism in cold-stored tomato fruit. Postharvest Biology and Technology 57: 106-113.
  • Lee, S.-J. and Rose, J.K.C. (2010) Characterization of the plant cell wall proteome using high throughput screens (In press Methods in Molecular Biology).
  • Lee, S.-J. and Rose, J.K.C. (2010) Mediation of the transition from biotrophy to necrotrophy in hemibiotrophic plant pathogens by secreted effector proteins. Plant Signaling and Behavior 5/6: 1559-2316.
  • McCann, M. and Rose, J.K.C. (2010) Blueprints for building plant cell walls. Plant Physiology 153: 365.
  • Rose, J.K.C. and Lee, S.-J. (2010) Straying off the highway: trafficking of secreted plant proteins and complexity in the plant cell wall proteome. Plant Physiology 153: 433-436.
  • Kelley, B.S., Lee, S.-J., Damasceno, C.M.B., Chakravarthy, S., Kim, B.-D., Martin, G.B. and Rose, J.K.C. (2010) A secreted effector protein (SNE1) from Phytophthora infestans is a broadly acting suppressor of programmed cell death. The Plant Journal 62: 357-366.
  • The International Brachypodium Initiative (2010) Genome sequence analysis of the model grass Brachypodium distachyon: insights into grass genome evolution. Nature 462: 763-768.
  • Xiang, B., Yang, X. & Thannhauser, T. W. (2009) Protein N- and C-termini identification using mass spectrometry and isotopic labeling. Rapid Communications in Mass Spectrometry 23: 2102-2106
  • Zhou, S., Sauve, R., Fish, T. and Thannhauser, T.W. (2009) Salt induced and salt suppressed proteins in tomato leaves. Journal of the American Society for Horticultural Science 134: 289-292.
  • Zhou, S., Sauve, R. and Thannhauser, T.W. (2009) Proteome changes induced by aluminium stress in tomato roots. Journal of Experimental Botany 60:1849-1857
  • Vrebalov, J., Pan, I.L., Matas, A.J., McQuinn, R., Chung., M.Y., Poole, M., Rose, J.K.C., Seymour, G., Giovannoni, J.J. and Irish, V.F. (2009) Fleshy fruit expansion and ripening are regulated by the tomato SHATTERPROOF gene, TAGL1. The Plant Cell 21: 3041-3062 (front cover).
  • Isaacson, T., Kosma, D.K., Matas, A.J., Buda, G.J., He, Y., Yu, B., Pravitasari, A., Batteas, J.D., Stark, R.E., Jenks, M.A. and Rose, J.K.C. (2009) Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss. The Plant Journal 60: 363-377.
  • Buda, G.J., Isaacson, T., Matas, A.J., Paolillo, D.J. and Rose, J.K.C. (2009) Three dimensional imaging of plant cuticle architecture using confocal scanning laser microscopy. The Plant Journal 60: 378-385 (front cover).
  • Matas, A.J., Gapper, N., Chung, M.-Y., Giovannoni, J.J. and Rose, J.K.C. (2009) Biology and genetic engineering of fruit maturation for enhanced quality and shelf-life. Current Opinion in Biotechnology 20: 197-203.
  • Alós, E., Roca, M., Iglesias, D.J., Mínguez-Mosquera, M.I., Damasceno, C.M.B., Thannhauser, T.W., Rose, J.K.C., Talón, M. and Cercós, M. (2008) An evaluation of the basis and consequences of a stay-green mutation in the navel negra (nan) citrus mutant using transcriptomic and proteomic profiling and metabolite analysis. Plant Physiology 147: 1300-1315.
  • Urbanowicz, B.R. and Rose J.K.C. (2008) Sustainable biofuels: a daunting challenge for plant scientists. Chemistry Today 26: 23-25.
  • Lopez-Casado, G., Urbanowicz, B.R., Damasceno C.M.B. and Rose J.K.C. (2008) Plant glycosyl hydrolases and biofuels: a natural marriage. Current Opinion in Plant Biology 11: 329-337.
  • Cara, B. and Giovannoni, J. (2008) The molecular biology of ethylene during tomato fruit development and maturation. Plant Science. 175:106-113.
  • Yeats, T.H. and Rose, J.K.C. (2008) The biochemistry and biology of extracellular plant lipid-transfer proteins (LTPs) Protein Science 17: 191-198.
  • Damasceno, C.M.B., Bishop, J.G., Ripoll, D.R., Win, J., Kamoun, S. and Rose, J.K.C. (2008) The structure of the glucanase inhibitor protein (GIP) family from Phytophthora species and co-evolution with plant endo-Β-1,3-glucanases. Molecular Plant-Microbe Interactions 21: 820-830.
  • Giovannoni, J. (2007) Fruit ripening mutants yield insights into ripening control. Current Opinion in Plant Biology. 10:283-289.
  • Damasceno, C.M.B. and Rose, J.K.C. (2007) Tandem-affinity purification (TAP) tags. Encyclopedia of Life Sciences. Pub. John Wiley & Sons) http://www.els.net [DOI: 10.1002/9780470015902.a0020212).
  • Vicente, A.R., Saladié, M., Rose, J.K.C. and Labavitch, J.M (2007) The linkage between cell wall metabolism and the ripening-associated softening of fruits: looking to the future. Journal of the Science of Food and Agriculture 87: 1435-1448.
  • Urbanowicz, B.R., Bennett, A.B., Catalá, C., del Campillo, E., Hayashi, T., Henrissat, B., Höfte, H., McQueen-Mason, S., Patterson, S., Shoseyov, O., Teeri, T. and Rose, J.K.C. (2007) Structural organization and a standardized nomenclature for plant endo-1,4-Β-glucanases of glycosyl hydrolase family 9. Plant Physiology 144: 1693-1696.
  • Urbanowicz, B.R., Catalá, C., Irwin, D., Wilson, D.B., Ripoll, D.R. and Rose, J.K.C. (2007) A tomato endo-Β-1,4-glucanase, SlCel9C1, represents a distinct subclass with a new family of carbohydrate binding modules (CBM49). Journal of Biological Chemistry 282: 12066-12074.
  • Tyler, B.M.; Tripathy, S.; Zhang, X.; Dehal, Jiang. R. H.Y.; Aerts, A.; Arredondo, F.D.; Baxter, L.; Bensasson, D.; Beynon, J.L.; Chapman, J.; Damasceno, C.M.B.; Dorrance, A.E.; Dou, D.; Dickerman, A.W.; Dubchak, I.L.; Garbelotto, M.; Gijzen, M.; Gordon, S.G.; Govers, F.; Grunwald, N.J.; Huang, W.; Ivors, K.L.; Jones, R.W.; Kamoun, S.; Krampis, S.; Lamour, K.H.; Lee, M.-K.; Maclean, D.J.; McDonald, W.H., Medina, M., Meijer, H.J.G., Morris, P.F., Nordberg, E.K., Ospina-Giraldo, M.D.; Phuntumart, V.; Putnam, N.H.; Rash, S.; Rose, J.K.C.; Sakihama, Y.; Salamov, A.A.; Savidor, A.; Scheuring, C.F.; Smith, B.M.; Sobral, B.W.S.; Terry, A.; Torto-Alalibo, T.A.; Win, J.; Xu, Z.; Zhang, H.; Grigoriev, I.V.; Rokhsar, D.S.; Boore, J.L. (2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 313: 1261-1266.
  • Lee, S.J., Kim, B.-D. and Rose, J.K.C. (2006) Identification of eukaryotic secreted and cell surface proteins using the yeast secretion trap screen. Nature Protocols 1: 2439-2447.
  • Lee, S.-J. Kelley, B., Damasceno, C.M.B., St. John, B., Kim, B.-S. Kim, B.-D. and Rose, J.K.C. (2006) A functional screen to characterize the secretomes of eukaryotic phytopathogens and their hosts in planta. Molecular Plant Microbe Interactions 12: 1368-1377.
  • Isaacson, T., Saravanan, R.S., He, Y., Damasceno, C.M.B., Catalá, C., Saladié, M. and Rose, J.K.C. (2006) Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nature Protocols 1: 769-774.
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