Annotation of 6 tomato BAC sequences.
The information on this web-page accompanies the paper:
Deductions about the number, organization and evolution of genes in
the tomato genome based on analysis of a large EST collection and
selective genomic sequencing (Plant Cell issue [forthcoming]).
Linked below are files that represent the data analysis and
annotation results of the six BACs mentioned in this paper. The
Artmenis files summarize the annotation of the BACs and are
viewable with the DNA sequence viewer Artemis [1]
available from the Sanger
center. [Download] These
files may also be viewed as plain text. The BLAST files are BLAST
outputs of sequence similarity analyses against various databases
available at SGN. [2]
Artmenis Data
gi_9858768
gi_15987769
gi_15987770
gi_15987771
gi_15987772
gi_15987773
gi_15987774
BLASTX against GenPept
gi_9858768
gi_15987769
gi_15987770 and gi_15987771
gi_15987772
gi_15987773
gi_15987774
BLASTN against Lycopersicon Esculentum Contigs (Unigene Build
2)
gi_9858768
gi_15987769
gi_15987770 and gi_15987771
gi_15987772
gi_15987774
TBLASTX against Arabidopsis Tiling Path (SGN)
gi_9858768
gi_15987769
gi_15987770 and gi_15987771
gi_15987772
gi_15987773
gi_15987774
BLASTN against SGN EST database
gi_9858768
gi_15987769
gi_15987770 and gi_15987771
gi_15987772
gi_15987773
gi_15987774
[1] K. Rutherford, J. Parkhill, J. Crook, T. Horsnell, P. Rice,
M-A. Rajandream and B. Barrell (2000) Artemis: sequence
visualization and annotation (Bioinformatics 16 (10) 944-945.
Abstract)
[2] Currently available SGN BLAST databases may have been
changed or updated since this work was published.
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