BLASTX 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= stgn_187968 (886 letters) Database: ../database/ATH1_pep_20030417 28,581 sequences; 12,141,370 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g23230.1 348 2e-96 At2g07370.1 33 0.22 At5g06610.1 32 0.48 At2g45540.1 32 0.63 At3g07160.1 30 1.8 At5g28495.1 30 1.8 At3g03770.1 30 2.4 At4g38750.1 29 3.1 At1g51140.1 29 4.1 At5g59920.1 28 5.3 At5g43400.1 28 7.0 At5g35730.1 28 7.0 At4g23030.1 28 9.1 >At1g23230.1 Length = 1616 Score = 348 bits (893), Expect = 2e-96 Identities = 169/224 (75%), Positives = 197/224 (87%), Gaps = 6/224 (2%) Frame = -3 Query: 884 QQLSCLLIQACGLLLAQLPPEFHVQLYVEAARIIKESWWLTDAKRSMGELESAVSYALLD 705 QQLSCLLIQACGLLLAQLPP+FHVQLY+EAAR+ +E+WWL D KRS GEL+SAV YAL+D Sbjct: 1379 QQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMD 1438 Query: 704 PTWAAQDNTSTAIGNIVALLHAFFCNLPQEWLEGTHLIIKHLRPVTSVAVLRISFRIMGP 525 PTWAAQDNTSTAIGNIVALLHAFF NLPQEWL+GT+ II +LRPVTSVA+LR+ FRIMGP Sbjct: 1439 PTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGP 1498 Query: 524 LLPRLVNAHTLFSKTVSLLLNILVDVFGKNSQLSAPIEATEISDLIDFLHHVIHYEG--- 354 LLPRL + HTLF+KT+ LLL+ LVDVFGK +Q +AP+EA++I+DLIDFLHH+IHYEG Sbjct: 1499 LLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGG 1558 Query: 353 ---ASSKPRTEILALFGRAAENLRPDVQHLLSHLNTDVNTSVYA 231 SSKPR +ILAL GRAAE LRPDVQHLL+HL T+ N+S+YA Sbjct: 1559 AVQTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYA 1602 >At2g07370.1 Length = 567 Score = 33.1 bits (74), Expect = 0.22 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = -3 Query: 794 ARIIKESWWLTDAKRSMGELESAVSYALLDPTWAAQDNTSTAIGNIVALLHAFFCNLP 621 A +IK W+ S+ EL+S ++ L DP W A + +++ LHA F P Sbjct: 434 AMVIKALIWMQSPDESLDELKSIIASELSDPGWPA-----ALVNDVLLTLHARFKATP 486 >At5g06610.1 Length = 369 Score = 32.0 bits (71), Expect = 0.48 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Frame = -3 Query: 869 LLIQACGLLLAQLPPEFHV---QLYVEAARIIKESWWLTDAKRSMGELESAVSYALLDPT 699 LL+ G L +PP + Q+ A II++ T K+ GE+++ + T Sbjct: 54 LLLSVMGCPLFPVPPLSKISLQQVSSSAQYIIQQFAAATGCKKLAGEIKNTFVTGKITMT 113 Query: 698 WAAQDNTSTAIGNIVALLH----AFFCNLPQEWL 609 + N+STA+ + ++ H + LP++WL Sbjct: 114 MVSDINSSTAVSSASSVSHKGCFVMWQMLPEKWL 147 >At2g45540.1 Length = 2947 Score = 31.6 bits (70), Expect = 0.63 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 14/71 (19%) Frame = +1 Query: 691 AAQVGSSRA*LTADSNS-PIDLLASV---SHQLSFI----MRAAS------TYSCT*NSG 828 ++++ SSRA L++DS P+D+LAS+ S Q+S + + AAS + SC S Sbjct: 1418 SSEISSSRASLSSDSGKVPLDILASMADSSGQISAVAMERLTAASAAEPYESVSCAFVSY 1477 Query: 829 GSCAKRRPHAW 861 GSCA W Sbjct: 1478 GSCAMDLAEGW 1488 >At3g07160.1 Length = 1932 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -3 Query: 419 PIEATEISDLIDFLHHVIHYEGAS-SKPRTEILALFGRAAENL 294 PI AT +D++DFLH++ ++ S S R I+ L L Sbjct: 242 PIPATRTADMLDFLHYIFGFQKDSVSNQREHIVLLLANEQSRL 284 >At5g28495.1 Length = 294 Score = 30.0 bits (66), Expect = 1.8 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -3 Query: 755 KRSMGELESAVSYALLDPTWAAQDNTSTAIGNIVALLHAFFCNLPQE 615 ++++G+ + S+ L D WA + T +G + LL+ C+LP E Sbjct: 8 EKTVGKSKKDWSFQLDDALWAYKTTFKTPLGTTLFLLYGKACHLPVE 54 >At3g03770.1 Length = 803 Score = 29.6 bits (65), Expect = 2.4 Identities = 27/88 (30%), Positives = 40/88 (45%) Frame = -3 Query: 581 LRPVTSVAVLRISFRIMGPLLPRLVNAHTLFSKTVSLLLNILVDVFGKNSQLSAPIEATE 402 L +T++ VL + GPL PRL N K V+L+L+ KN SA + A E Sbjct: 220 LSHLTNLQVLDLEGNSFGPLFPRLSN------KLVTLILS-------KNKFRSA-VSAEE 265 Query: 401 ISDLIDFLHHVIHYEGASSKPRTEILAL 318 +S L H + Y T +++L Sbjct: 266 VSSLYQLQHLDLSYNTFVGPFPTSLMSL 293 >At4g38750.1 Length = 1074 Score = 29.3 bits (64), Expect = 3.1 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -3 Query: 593 IIKHLRPVTSVAVLRISFRIMGP---LLPRLVNAHTLFSKTVSLLLNILVDVFGKNSQLS 423 ++K + S++V + R +GP +L L +++ + KT++LLL +L+ V G S S Sbjct: 522 LLKSAKKNLSLSVCALVLRNVGPGLKILGSLRHSNAILKKTINLLLEVLLLVVGFGSDNS 581 >At1g51140.1 Length = 380 Score = 28.9 bits (63), Expect = 4.1 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -3 Query: 428 LSAPIEATEISDLID-FLHHVIHYEGASSKP 339 LS ++ T+ SD +D FLHH + +G KP Sbjct: 59 LSGFLQTTDTSDNVDSFLHHTFNSDGTEKKP 89 >At5g59920.1 Length = 711 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 204 CSYC*VVPCFNLV*HASLC*FTSC 133 C C +P N++ H S+C FTSC Sbjct: 196 CLLCGNIPAENMLYHCSVCNFTSC 219 >At5g43400.1 Length = 656 Score = 28.1 bits (61), Expect = 7.0 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -1 Query: 388 STSCIMLFITRGHLVNPEQKFWLFL--EEQQKICV 290 S + + LF+ G +VNPE W+ + EE +K+ V Sbjct: 619 SKNLLTLFLEEGGIVNPEDVMWIAIKGEEYKKLVV 653 >At5g35730.1 Length = 458 Score = 28.1 bits (61), Expect = 7.0 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -3 Query: 731 SAVSYALLDPTWAAQDNTSTAIGNIVALLHAFFCNLPQEW-LEGTHLIIKHLRPVT 567 SA+ Y ++ +W + +++ L++F+ ++ ++W L G I K RP T Sbjct: 310 SALKYHVMPESWTSFYRPLWLFSSVINSLYSFYWDVTRDWDLSGFTKIFKFSRPST 365 >At4g23030.1 Length = 503 Score = 27.7 bits (60), Expect = 9.1 Identities = 8/24 (33%), Positives = 12/24 (50%) Frame = -1 Query: 523 CFRGWSMLTPFSVRQCRCF*ISWW 452 CF+GW L ++ C + WW Sbjct: 251 CFKGWRSLMKLAIPSCVSVCLEWW 274 Database: ../database/ATH1_pep_20030417 Posted date: Feb 16, 2004 1:44 PM Number of letters in database: 12,141,370 Number of sequences in database: 28,581 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,786,637 Number of Sequences: 28581 Number of extensions: 414622 Number of successful extensions: 1038 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1037 length of database: 12,141,370 effective HSP length: 99 effective length of database: 9,311,851 effective search space used: 1815810945 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= cangn_205421 (602 letters) Database: ../database/ATH1_pep_20030417 28,581 sequences; 12,141,370 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g71220.1 382 e-107 At1g13250.1 48 5e-06 At2g38650.1 40 7e-04 At3g01040.1 37 0.006 At5g54690.1 37 0.008 At2g46480.1 37 0.008 At5g47780.1 35 0.041 At5g15470.1 34 0.053 At4g38270.1 34 0.053 At2g20810.1 33 0.091 At3g18170.1 30 1.3 At5g51750.1 28 3.8 At3g57830.1 28 3.8 At1g12190.1 28 5.0 At5g59190.1 27 6.5 At2g42290.1 27 6.5 At5g49840.1 27 8.5 At5g34930.1 27 8.5 >At1g71220.1 Length = 1675 Score = 382 bits (981), Expect(2) = e-107 Identities = 179/204 (87%), Positives = 185/204 (90%), Gaps = 18/204 (8%) Frame = +1 Query: 43 FKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLALEKVIFVD 222 FKDVIPHMAQEY FEYELITYKWP+WLHKQKEKQRIIWAYKILFLDVIFPL+LEKVIFVD Sbjct: 1387 FKDVIPHMAQEYNFEYELITYKWPSWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVD 1446 Query: 223 ADQIVRTDMGELYDMDLKGRPLAYTPFCDNNREMDGYRFWKQGFWKEHLRGRPYHISALY 402 ADQI+RTDMGELYDMD+KGRPLAYTPFCDNNREMDGY+FWKQGFWKEHLRGRPYHISALY Sbjct: 1447 ADQIIRTDMGELYDMDIKGRPLAYTPFCDNNREMDGYKFWKQGFWKEHLRGRPYHISALY 1506 Query: 403 VVDLLKFRETAAGDNLRVFYETLSKDPNSLSNLD------------------QDLPNYAQ 528 VVDL+KFRETAAGDNLRVFYETLSKDPNSLSNLD QDLPNYAQ Sbjct: 1507 VVDLVKFRETAAGDNLRVFYETLSKDPNSLSNLDQAFAFDSYHTPCSESLEFQDLPNYAQ 1566 Query: 529 HTVPIFSLPQEWLWCESWCGNATK 600 HTVPIFSLPQEWLWCESWCGNATK Sbjct: 1567 HTVPIFSLPQEWLWCESWCGNATK 1590 Score = 23.1 bits (48), Expect(2) = e-107 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +3 Query: 3 PVKFWFIK 26 PVKFWFIK Sbjct: 1373 PVKFWFIK 1380 >At1g13250.1 Length = 346 Score = 47.8 bits (112), Expect = 5e-06 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Frame = +1 Query: 160 YKILFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGRPLAYTPFCDNN-REMDGYR 336 Y ++L + P+A+ +VI+ D+D +V D+ +L+ +DL+ + +C N R Sbjct: 146 YARIYLADLLPIAVRRVIYFDSDLVVVDDVAKLWRIDLRRHVVGAPEYCHANFTNYFTSR 205 Query: 337 FWKQGFWKEHLRGRP--YHISALYVVDLLKFRE 429 FW +K L+ R Y + + V+DL K+RE Sbjct: 206 FWSSQGYKSALKDRKPCYFNTGVMVIDLGKWRE 238 >At2g38650.1 Length = 620 Score = 40.4 bits (93), Expect = 7e-04 Identities = 26/97 (26%), Positives = 48/97 (49%) Frame = +1 Query: 199 LEKVIFVDADQIVRTDMGELYDMDLKGRPLAYTPFCDNNREMDGYRFWKQGFWKEHLRGR 378 LEKV+ +D D +V+ D+ L+D+D++G+ C + R K+G + + Sbjct: 443 LEKVVILDDDVVVQRDLSPLWDLDMEGKVNGAVKSC--TVRLGQLRSLKRGNFDTN---A 497 Query: 379 PYHISALYVVDLLKFRETAAGDNLRVFYETLSKDPNS 489 +S L VVDL ++R + + +Y+ +S S Sbjct: 498 CLWMSGLNVVDLARWRALGVSETYQKYYKEMSSGDES 534 >At3g01040.1 Length = 534 Score = 37.4 bits (85), Expect = 0.006 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Frame = +1 Query: 169 LFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGRPLAYTPFCDN------NREMDG 330 ++L +FP L+KV+F+D D +++ D+ L+D+DL G+ C ++ + Sbjct: 335 IYLPELFP-NLDKVVFLDDDIVIQKDLSPLWDIDLNGKVNGAVETCRGEDVWVMSKRLRN 393 Query: 331 YRFWKQGFWKEHLRGRPYHISALY---VVDLLKFRETAAGDNLRVFYETLSKDPNSLSNL 501 Y + +HL P + Y + DL +R+T N+R Y + K+ NL Sbjct: 394 YFNFSHPLIAKHL--DPEECAWAYGMNIFDLRTWRKT----NIRETYHSWLKE-----NL 442 Query: 502 DQDLPNYAQHTVP 540 +L + T+P Sbjct: 443 KSNLTMWKLGTLP 455 >At5g54690.1 Length = 536 Score = 37.0 bits (84), Expect = 0.008 Identities = 15/38 (39%), Positives = 28/38 (73%) Frame = +1 Query: 169 LFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGR 282 + L +FP +L KV+F+D D +++TD+ L+D+D+ G+ Sbjct: 336 IHLPELFP-SLNKVVFLDDDIVIQTDLSPLWDIDMNGK 372 >At2g46480.1 Length = 529 Score = 37.0 bits (84), Expect = 0.008 Identities = 17/37 (45%), Positives = 27/37 (72%) Frame = +1 Query: 172 FLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGR 282 ++ IFP LEK++FVD D +V+ D+ L+ +DLKG+ Sbjct: 363 YIPRIFP-KLEKILFVDDDVVVQKDLTPLWSIDLKGK 398 >At5g47780.1 Length = 617 Score = 34.7 bits (78), Expect = 0.041 Identities = 17/36 (47%), Positives = 25/36 (69%) Frame = +1 Query: 172 FLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKG 279 +L IFP L KV+F+D D +V+ D+ L+ +DLKG Sbjct: 426 YLPEIFP-KLSKVLFLDDDIVVQKDLSGLWSVDLKG 460 >At5g15470.1 Length = 533 Score = 34.3 bits (77), Expect = 0.053 Identities = 15/38 (39%), Positives = 28/38 (73%) Frame = +1 Query: 169 LFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGR 282 +++ +FP L+KV+F+D D +V+ D+ L+D+DL G+ Sbjct: 334 IYIPELFP-NLDKVVFLDDDIVVQGDLTPLWDVDLGGK 370 >At4g38270.1 Length = 681 Score = 34.3 bits (77), Expect = 0.053 Identities = 13/37 (35%), Positives = 28/37 (75%) Frame = +1 Query: 172 FLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGR 282 +L ++P LEK++F+D D +V+ D+ L+++D++G+ Sbjct: 490 YLPEVYP-KLEKILFLDDDIVVQKDLAPLWEIDMQGK 525 >At2g20810.1 Length = 537 Score = 33.5 bits (75), Expect = 0.091 Identities = 14/34 (41%), Positives = 25/34 (73%) Frame = +1 Query: 172 FLDVIFPLALEKVIFVDADQIVRTDMGELYDMDL 273 ++ +FP AL+KV+F+D D +V+ D+ L+ +DL Sbjct: 348 YIPEVFP-ALKKVVFLDDDVVVQKDLSSLFSIDL 380 >At3g18170.1 Length = 385 Score = 29.6 bits (65), Expect = 1.3 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +1 Query: 94 LITYKWPTWLHKQKEKQRIIWAYKILFLD 180 L+T K P+W++K KE R + Y+++++D Sbjct: 127 LVTNKSPSWINKFKELVRKLSNYEVIYID 155 >At5g51750.1 Length = 781 Score = 28.1 bits (61), Expect = 3.8 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 9/98 (9%) Frame = +1 Query: 88 YELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLALEKVIFVDADQIVRTDMGELYDM 267 YEL T + PT+L ++++ +WA ++ DV+ + L+ I+ +++ T M + Sbjct: 117 YELHTTRSPTFLGLERQESERVWAERVTDHDVVVGV-LDTGIWPESESFNDTGMSPV--- 172 Query: 268 DLKGRPLAYTPFCDN---------NREMDGYRFWKQGF 354 P + C+ NR++ G R + +G+ Sbjct: 173 -----PATWRGACETGKRFLKRNCNRKIVGARVFYRGY 205 >At3g57830.1 Length = 663 Score = 28.1 bits (61), Expect = 3.8 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -2 Query: 373 LVNAPSRNLVSKNDSHPSPCCCHRMVCTQGAAPS 272 ++ P+R + S ++S P+PC ++CT G S Sbjct: 39 ILRDPTRVMTSWSESDPTPCHWPGIICTHGRVTS 72 >At1g12190.1 Length = 376 Score = 27.7 bits (60), Expect = 5.0 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +1 Query: 466 TLSKDPN-SLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGN 591 +L+ DPN L L D+P H F + L+C SW N Sbjct: 68 SLNDDPNIELRELPLDIPYVIDHRTTNFLPCNDLLFCASWWSN 110 >At5g59190.1 Length = 694 Score = 27.3 bits (59), Expect = 6.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 Query: 299 HSVTTTGRWMAIVFGNKVSGRSIYEADHTILVL 397 H +TTT W + FG K S+ E+D + V+ Sbjct: 70 HELTTTRSWDFVGFGEKARRESVKESDVIVGVI 102 >At2g42290.1 Length = 647 Score = 27.3 bits (59), Expect = 6.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 367 NAPSRNLVSKNDSHPSPCCCHRMVCTQG 284 N P+R + ++S P+PC +VCT G Sbjct: 40 NDPTRVMTHWSESDPTPCHWSGIVCTNG 67 >At5g49840.1 Length = 607 Score = 26.9 bits (58), Expect = 8.5 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 485 FGSLLRVS*NTRKLSPAAVSRNLSRSTTYRALIWYGL 375 FG+ +R + +T LS AAV+ +L S L+ YGL Sbjct: 419 FGASVRTNMSTSGLSSAAVTSSLLESLQSEDLVAYGL 455 >At5g34930.1 Length = 641 Score = 26.9 bits (58), Expect = 8.5 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +1 Query: 412 LLKFRETAAGDNLRVFYETLSKDPNSLSNLDQ 507 LLK E AGD+ ++Y +PN++ L++ Sbjct: 571 LLKLVENTAGDSFDLYYGLFLYNPNAMEQLER 602 Database: ../database/ATH1_pep_20030417 Posted date: Feb 16, 2004 1:44 PM Number of letters in database: 12,141,370 Number of sequences in database: 28,581 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,030,419 Number of Sequences: 28581 Number of extensions: 341431 Number of successful extensions: 924 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 922 length of database: 12,141,370 effective HSP length: 95 effective length of database: 9,426,175 effective search space used: 989748375 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= cgn_120653 (1042 letters) Database: ../database/ATH1_pep_20030417 28,581 sequences; 12,141,370 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g23230.1 148 6e-36 At3g28480.1 30 3.0 >At1g23230.1 Length = 1616 Score = 148 bits (373), Expect = 6e-36 Identities = 73/107 (68%), Positives = 88/107 (82%) Frame = +1 Query: 4 HPLFSKTLSLLLTIMVDVFGKNSQPLAPVEASEIVDLIDFLHHVIHYEGQAGPVQASSKP 183 H LF+KTL LLL+ +VDVFGK +Q APVEAS+I DLIDFLHH+IHYEGQ G VQ SSKP Sbjct: 1507 HTLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKP 1566 Query: 184 RTEVLALLGRAADSLRPDMQRLLSHLKTDVNCSIYAATHPKLAQNTS 324 R ++LAL+GRAA++LRPD+Q LL+HLKT+ N SIYAA H QNT+ Sbjct: 1567 RPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH---QQNTA 1610 >At3g28480.1 Length = 317 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 414 TAETEVSATPSLFLYLRWLGDRECKQF 334 T T++S TP +FLY +L D EC F Sbjct: 54 TRVTQLSWTPRVFLYEGFLSDEECDHF 80 Database: ../database/ATH1_pep_20030417 Posted date: Feb 16, 2004 1:44 PM Number of letters in database: 12,141,370 Number of sequences in database: 28,581 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,546,199 Number of Sequences: 28581 Number of extensions: 520784 Number of successful extensions: 1114 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1079 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1114 length of database: 12,141,370 effective HSP length: 101 effective length of database: 9,254,689 effective search space used: 2267398805 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) BLASTX 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= At1g23230.1 (4848 letters) Database: ../database/ATH1_pep_20030417 28,581 sequences; 12,141,370 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g23230.1 3048 0.0 At5g63730.1 34 0.72 At1g16710.1 33 2.1 At1g33940.1 33 2.1 At5g18700.1 32 2.7 At1g64210.1 32 2.7 At3g22400.1 32 3.6 At3g61150.1 32 4.7 At4g37100.1 31 6.1 At1g28320.1 31 6.1 At1g69280.1 31 7.9 At4g21960.1 31 7.9 >At1g23230.1 Length = 1616 Score = 3048 bits (7902), Expect = 0.0 Identities = 1534/1615 (94%), Positives = 1534/1615 (94%) Frame = +1 Query: 1 MDQSQRTVAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKRVHA 180 MDQSQRTVAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKRVHA Sbjct: 1 MDQSQRTVAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKRVHA 60 Query: 181 PNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFALRT 360 PNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFALRT Sbjct: 61 PNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFALRT 120 Query: 361 LCRISYINWDTFLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540 LCRISYINWDTFLP Sbjct: 121 LCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVSVNPTSLLP 180 Query: 541 XAHGIGSPSASEVKSVENGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGV 720 AHGIGSPSASEVKSVENGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGV Sbjct: 181 SAHGIGSPSASEVKSVENGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGV 240 Query: 721 ESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVE 900 ESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVE Sbjct: 241 ESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVE 300 Query: 901 EGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGT 1080 EGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGT Sbjct: 301 EGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGT 360 Query: 1081 HRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHA 1260 HRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHA Sbjct: 361 HRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHA 420 Query: 1261 IRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDC 1440 IRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDC Sbjct: 421 IRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDC 480 Query: 1441 FGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHIL 1620 FGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHIL Sbjct: 481 FGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHIL 540 Query: 1621 RTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSS 1800 RTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSS Sbjct: 541 RTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSS 600 Query: 1801 CQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNMDDRSIGMFWVVSYTM 1980 CQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNMDDRSIGMFWVVSYTM Sbjct: 601 CQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNMDDRSIGMFWVVSYTM 660 Query: 1981 AQPACETVINWLSSAGMAELPGLQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEE 2160 AQPACETVINWLSSAGMAELPGLQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEE Sbjct: 661 AQPACETVINWLSSAGMAELPGLQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEE 720 Query: 2161 ALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYR 2340 ALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYR Sbjct: 721 ALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYR 780 Query: 2341 LLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGK 2520 LLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGK Sbjct: 781 LLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGK 840 Query: 2521 GPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPS 2700 GPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPS Sbjct: 841 GPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPS 900 Query: 2701 LLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLC 2880 LLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLC Sbjct: 901 LLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLC 960 Query: 2881 AGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTXXXXXXXXXXXXXQQGQSLEAVL 3060 AGACLLMQGHAENINSTNLARVLREVSPEEVTANIYT QQGQSLEAVL Sbjct: 961 AGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVL 1020 Query: 3061 DKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRG 3240 DKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRG Sbjct: 1021 DKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRG 1080 Query: 3241 SPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQ 3420 SPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQ Sbjct: 1081 SPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQ 1140 Query: 3421 ADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYI 3600 ADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYI Sbjct: 1141 ADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYI 1200 Query: 3601 SPTGAPVCPPLDYFASXXXXXXXXXIPPLXXXXXXXXXXXXMADILNSSARPPHGKTPGT 3780 SPTGAPVCPPLDYFAS IPPL MADILNSSARPPHGKTPGT Sbjct: 1201 SPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGT 1260 Query: 3781 SQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQST 3960 SQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQST Sbjct: 1261 SQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQST 1320 Query: 3961 LIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQ 4140 LIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQ Sbjct: 1321 LIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQ 1380 Query: 4141 LSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPT 4320 LSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPT Sbjct: 1381 LSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPT 1440 Query: 4321 WAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLL 4500 WAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLL Sbjct: 1441 WAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLL 1500 Query: 4501 PRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAV 4680 PRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAV Sbjct: 1501 PRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAV 1560 Query: 4681 QTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAHQQNTAKTNTS 4845 QTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAHQQNTAKTNTS Sbjct: 1561 QTSSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAHQQNTAKTNTS 1615 >At5g63730.1 Length = 507 Score = 34.3 bits (77), Expect = 0.72 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 17/89 (19%) Frame = -3 Query: 1945 TYHPYSYNPSSALLCFSTTHRS-----VFPS-----TAVHCL-------GMP*LLCLVTK 1817 ++ P S N +S LC +T S ++P+ T HCL MP L V + Sbjct: 221 SHRPVSCNKASDWLCSATMKISDESFSLYPTKTKTVTCPHCLCSLESDTKMPQFLTCVCR 280 Query: 1816 SVDSDNCLRSQATHSEDCWDQNFCLPCEM 1730 CLRS+ H + D FC+ E+ Sbjct: 281 LRFCSRCLRSEEAHKIEAVDSGFCIKTEV 309 >At1g16710.1 Length = 1707 Score = 32.7 bits (73), Expect = 2.1 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Frame = +1 Query: 3916 IVSSLVQIIV---NIQSTLIQSGN-----GFHGA--ANGVGQGSVLPTSPSGGSTDSMSA 4065 + SS+ IV NI ST + +GN G HG +NG S + SGGS SM A Sbjct: 174 VTSSVDATIVGNTNITSTALNTGNPLIAGGMHGGNMSNGYQHSSRNFSLGSGGSMTSMGA 233 Query: 4066 SRSTCLIPGINTASFVS 4116 RST + I T FV+ Sbjct: 234 QRSTAQM--IPTPGFVN 248 >At1g33940.1 Length = 498 Score = 32.7 bits (73), Expect = 2.1 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 952 FIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGTHRIVSQ 1098 F+ N+P T I++ RRR + +H+L+L + LHC + + +SQ Sbjct: 406 FLTNLPK----ITQILDSWRRRKSTELHLLVLKRVLHCLGYACKQYLSQ 450 >At5g18700.1 Length = 1318 Score = 32.3 bits (72), Expect = 2.7 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 952 FIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGTHRIVSQ 1098 F+ N+P T I++ RRR + +H+L+L + LHC + + +SQ Sbjct: 1228 FLTNLPK----ITPILDSWRRRKSTELHLLVLKRVLHCLGYACKQYLSQ 1272 >At1g64210.1 Length = 588 Score = 32.3 bits (72), Expect = 2.7 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Frame = +1 Query: 3430 LLLAHSHFLAYHPLRFTFVRDILAYF--YGHLPGKLV-----LRMLKVLDLSKIPFSESF 3588 L L +HF P FT ++ + + + HL G L+ L+ LKVLDLS F+ S Sbjct: 93 LSLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPLLAIFSELKNLKVLDLSNNGFNGSI 152 Query: 3589 PQYIS 3603 P +S Sbjct: 153 PTSLS 157 >At3g22400.1 Length = 887 Score = 32.0 bits (71), Expect = 3.6 Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 18/137 (13%) Frame = +1 Query: 1741 EDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTT------TRAYLNNEQLLKGKQIDEWW-- 1896 ED NSD N + ++ D+ + L IWS T T Y N++ + +I WW Sbjct: 636 EDPNSD-NGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTE 694 Query: 1897 -RSKGERMMDYMNMDDRSIGMFWVVSYTMAQ--PACETVINWLSSA-------GMAELPG 2046 R+KG D+ +W T C T+I W++SA G G Sbjct: 695 LRTKGH--------GDKRHESWWPSMQTRDDLIETC-TIIIWIASALHAAVNFGQYPYAG 745 Query: 2047 LQPNDRVMMTQEVTPLP 2097 PN R +++ P P Sbjct: 746 FLPN-RPTVSRRFMPEP 761 >At3g61150.1 Length = 809 Score = 31.6 bits (70), Expect = 4.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 4527 ESMCTGKPRKQWPHDTEYNSEHCHRCHRPEVR 4432 + M G + W TEY+ H HR +RP +R Sbjct: 487 QDMANGYSKVTWIEHTEYDENHIHRLYRPLLR 518 >At4g37100.1 Length = 897 Score = 31.2 bits (69), Expect = 6.1 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 10/109 (9%) Frame = +1 Query: 1675 MTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFV-----SSCQNLRIW-----S 1824 +T S K + + KI ++ + ++ V LD+ S Q L W S Sbjct: 119 LTKFLSMYPKYQASEKIDQLRSDEYSHLSSSASKVCLDYCGFGLFSYVQTLHYWDTCTFS 178 Query: 1825 LSTTTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNMDDRSIGMFWVVS 1971 LS T A L+N L G + R+MDY+N+ + G+ + VS Sbjct: 179 LSEIT-ANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGLVFTVS 226 >At1g28320.1 Length = 710 Score = 31.2 bits (69), Expect = 6.1 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Frame = +1 Query: 3781 SQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQST 3960 SQP N K Q+ +P + + IL +P+S S + T Sbjct: 173 SQPS-INIEHYSKPLMQLDEPHNANFMAKSATRMAILGVPLSLLGQPSMNFASSSSKGDT 231 Query: 3961 LIQSGNGFHGAA-----NGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSG 4125 L+ G+ F + N V GS+ + PSG S+ + CL PG+ A +++G Sbjct: 232 LVALGSPFGILSPVNFFNSVSTGSIANSYPSGSLKKSLMIADVRCL-PGMEGAPVFAKNG 290 Query: 4126 Y 4128 + Sbjct: 291 H 291 >At1g69280.1 Length = 401 Score = 30.8 bits (68), Expect = 7.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +3 Query: 444 PRCSSSSGNGWFFCYFFAVCSSCVCESN 527 P C +S GW FC ++ S C C S+ Sbjct: 342 PSCDYNSSCGWLFCCHWSCWSCCCCSSS 369 >At4g21960.1 Length = 331 Score = 30.8 bits (68), Expect = 7.9 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 26/204 (12%) Frame = +1 Query: 610 RAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNW 789 +A IVRE +R + A + LR + + ++SL L++ Sbjct: 42 QAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASL---------------LLDS 86 Query: 790 DRRDLGTED---SVG-KSWRSEKTLAEWLR-------SCLDVIWLLVEEGESRI--PFYE 930 RR+LG ++ S G +++R + + E L SC D++ L EG + P+ Sbjct: 87 TRRELGEKEHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIP 146 Query: 931 L-------LRSGLQFIEN-IPDDEALFTLIMEIHRRRDAMAMHML-MLDQH----LHCPS 1071 L L+S +E+ +PD ++++E + ++ +L H HC Sbjct: 147 LKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVK 206 Query: 1072 FGTHRIVSQITANVPPEAVPHLRH 1143 HR+ ++ ++ P+ VPH+ H Sbjct: 207 L-VHRLYPEVDPSLNPDHVPHMLH 229 Database: ../database/ATH1_pep_20030417 Posted date: Feb 16, 2004 1:44 PM Number of letters in database: 12,141,370 Number of sequences in database: 28,581 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,945,454 Number of Sequences: 28581 Number of extensions: 2479088 Number of successful extensions: 7456 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7448 length of database: 12,141,370 effective HSP length: 113 effective length of database: 8,911,717 effective search space used: 13385398934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)