BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 227601
         (760 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06890.1                                                            83   1e-16
At3g18260.1                                                            30   1.1  
At5g12400.1                                                            28   4.3  
At4g25920.1                                                            28   5.6  
At1g69640.1                                                            28   7.3  

>At3g06890.1
          Length = 129

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 45/102 (44%), Positives = 53/102 (51%)
 Frame = +1

Query: 46  PHGXXXXXXXXXXXXXPTILGENGEAITDFISDXXXXXXXXXXXXXXXXXXQFLSSDTGS 225
           PHG             P  +G++GEAITD I++                  QFLSS+ GS
Sbjct: 19  PHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLLPIILLLTIQFLSSERGS 78

Query: 226 FINTIFSTGEPNSIHRVSGSPVGVXXXXXXXXXXXYNRFSIF 351
           F++ IFSTGEP SIHRVSGSPVGV           Y RFSIF
Sbjct: 79  FVSAIFSTGEPESIHRVSGSPVGVALFLVLILFLLYYRFSIF 120


>At3g18260.1
          Length = 226

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
 Frame = +3

Query: 411 FVWSVFVNTEGYRRP------------SSIVRTSYGEFS-ILNKLFVISCMNHMYLFYLT 551
           F+WS   +   + RP              + R+ +  F+ IL KL  ++C     LF+LT
Sbjct: 88  FIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLT 147

Query: 552 CICFYLILLV*R*FVPIFSSLFFSPYFSM 638
            I  Y++ ++   F   F +L F  + SM
Sbjct: 148 TISLYIVSIIGTYF--NFVNLLFIGFVSM 174


>At5g12400.1
          Length = 1596

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -3

Query: 227  NEPVSEERNWIVSR-RIIGSKRRPIGVRRSEMKSVIASPFSPRI 99
            +E +S+E+  +  R R  GS R+ IGV+  + K VIA+  SPR+
Sbjct: 1366 SEVLSKEQPTVRKRGRPPGSFRKKIGVQTQKRKKVIAARKSPRL 1409


>At4g25920.1
          Length = 391

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -3

Query: 257 GSPVEKMVLMNEPVSEERNWIVSRRIIGSKR---RPIGVRR 144
           GS ++ +V+ + P   ++NW+V  +++GS+    RP G R+
Sbjct: 140 GSQIQSLVMSSLP-KRDKNWVVVVKLLGSQLSMCRPFGSRK 179


>At1g69640.1
          Length = 261

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 459 YLAAGSLQYLQIHSKQKDKYNNRSSKISVAGIIIATED*KAVI 331
           Y+A  SL+  ++HSK +++  N  SK SV   ++  +  +AV+
Sbjct: 28  YVALSSLESYRLHSKVEEEEKNLVSKSSVVKGVLVQQVVQAVV 70


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,458,930
Number of Sequences: 28581
Number of extensions: 272708
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,141,370
effective HSP length: 97
effective length of database: 9,369,013
effective search space used: 1452197015
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cangn_197194
         (812 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06890.1                                                            80   2e-15
At2g01100.2                                                            30   1.6  
At2g01100.1                                                            30   1.6  
At5g35580.1                                                            28   6.2  

>At3g06890.1
          Length = 129

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 45/102 (44%), Positives = 51/102 (50%)
 Frame = +3

Query: 72  PHGXXXXXXXXXXXXXXXXXGENGEAITDFISEXXXXXXXXXXXXXXXXXXQFLSSDTGS 251
           PHG                 G++GEAITD I+E                  QFLSS+ GS
Sbjct: 19  PHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLLPIILLLTIQFLSSERGS 78

Query: 252 FINTIFSTGEPNSIHRVSGSPVGVXXXXXXXXXXXYNRFSIF 377
           F++ IFSTGEP SIHRVSGSPVGV           Y RFSIF
Sbjct: 79  FVSAIFSTGEPESIHRVSGSPVGVALFLVLILFLLYYRFSIF 120


>At2g01100.2
          Length = 248

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 471 KRKRENKKDNQNNIDLSKQTSLFSRRNHHLHRRWKSGCREGTILGQEKGQRQQ 313
           KRK+    ++ +  D S +    SRR+H+ HRR      + +   +EK  R+Q
Sbjct: 52  KRKQRAASESSSESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKKSRRQ 104


>At2g01100.1
          Length = 248

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 471 KRKRENKKDNQNNIDLSKQTSLFSRRNHHLHRRWKSGCREGTILGQEKGQRQQ 313
           KRK+    ++ +  D S +    SRR+H+ HRR      + +   +EK  R+Q
Sbjct: 52  KRKQRAASESSSESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKKSRRQ 104


>At5g35580.1
          Length = 458

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 504 LFTYTLQINKTKRKRENKKDNQNNIDLSKQTSL 406
           +FTYT+    TK +RE K+ +  N D  +QTSL
Sbjct: 379 IFTYTVP---TKPRREVKETSLQNFDKPRQTSL 408


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,499,573
Number of Sequences: 28581
Number of extensions: 270827
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,141,370
effective HSP length: 98
effective length of database: 9,340,432
effective search space used: 1606554304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cgn_123400
         (831 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06890.1                                                            61   7e-10
At2g33980.1                                                            28   4.9  
At5g22320.1                                                            28   6.4  
At2g30690.1                                                            28   8.4  

>At3g06890.1
          Length = 129

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 37/114 (32%), Positives = 43/114 (37%)
 Frame = +1

Query: 193 GRGPPYGIXXXXXXXXXXXXPMLVGDQGEAITEFIADXXXXXXXXXXXXXXXXXXXXXXX 372
           G   P+GI            P  +GD GEAIT+ IA+                       
Sbjct: 15  GGSAPHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLLPIILLLTIQFLSS 74

Query: 373 XXXXXXXXXXXXXXPNTIHRVSGSPVGVAXXXXXXXXXXYNRVSIFGGDDDSGE 534
                         P +IHRVSGSPVGVA          Y R SIFGGDD S +
Sbjct: 75  ERGSFVSAIFSTGEPESIHRVSGSPVGVALFLVLILFLLYYRFSIFGGDDGSDD 128


>At2g33980.1
          Length = 303

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 467 RKRATPTGEPLTRWMVLGSPVEKMLEMKEPLSEERNWMVRRRMM 336
           RK   PT  P     VL +P E  L+ +   SEE +WM  + ++
Sbjct: 168 RKAFNPTPNPAEVEAVLDAPFEMFLKDENRRSEEFDWMGEKHLV 211


>At5g22320.1
          Length = 453

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 11  NKHHKAKQEKGKANTSPPQPQLRKSKK-KDLKISEN 115
           N+ HK+K++K K+NT+  Q + +K ++ K+  I  N
Sbjct: 315 NEDHKSKKKKSKSNTNVDQVETKKKEEHKEKTIPSN 350


>At2g30690.1
          Length = 789

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
 Frame = +2

Query: 14  KHHKAKQEKG---------KANTSPPQPQLRKSKKKDLKISENQTT 124
           + H AK+E G           N S  +P L  S K  LKI+E + T
Sbjct: 567 EEHSAKEEHGDHEETEPLTSLNISKEEPSLEHSDKDSLKITETRNT 612


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,386,217
Number of Sequences: 28581
Number of extensions: 275089
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,141,370
effective HSP length: 98
effective length of database: 9,340,432
effective search space used: 1662596896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At3g06890.1
         (387 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06890.1                                                           119   6e-28
At1g55050.1                                                            30   0.39 
At1g07745.1                                                            28   1.9  
At1g76380.1                                                            27   4.3  
At2g31940.1                                                            26   7.4  
At1g61850.1                                                            26   7.4  

>At3g06890.1
          Length = 129

 Score =  119 bits (297), Expect = 6e-28
 Identities = 68/120 (56%), Positives = 68/120 (56%)
 Frame = +1

Query: 1   MYQDRQXXXXXXXXXXSAPHGIIXXXXXXXXXXXPFFIGDSGEAITDAIAEXXXXXXXXX 180
           MYQDRQ          SAPHGII           PFFIGDSGEAITDAIAE         
Sbjct: 1   MYQDRQGVVGGGGGGGSAPHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLL 60

Query: 181 XXXXXXXXXXXXSSERGSFVSAIFSTGEPESIHRVSGSPVGVAXXXXXXXXXXYYRFSIF 360
                       SSERGSFVSAIFSTGEPESIHRVSGSPVGVA          YYRFSIF
Sbjct: 61  LPIILLLTIQFLSSERGSFVSAIFSTGEPESIHRVSGSPVGVALFLVLILFLLYYRFSIF 120


>At1g55050.1
          Length = 915

 Score = 30.0 bits (66), Expect = 0.39
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 323 STRKRATPTGDPLTL*IDSGSPVEKMADTKEPRSDERNCIVRRRMIGSNRSP 168
           STRKR   T     L  D  +P  K   T +PR+ ER+  ++     +N++P
Sbjct: 788 STRKRPLTTRALEALESDFFTPKSKKTTTSKPRNRERSARIKHSANANNKTP 839


>At1g07745.1
          Length = 201

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 159 KKLCDRICNGLTTVSDEERNKHH*CNNDGEYDSV 58
           ++ C  + NGL  + D  RNKH     D E DS+
Sbjct: 44  ERQCRPLVNGLKLLEDLHRNKHTLSTGDKETDSL 77


>At1g76380.1
          Length = 580

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = -1

Query: 261 SGGENGRHEGTTFRREKLYSEEEDDRKQ*KSHRTKKLCDRICNGLTTVSDEERNKHH*CN 82
           S   N      + RR    SE++DD ++ K H       R+ +GL   S E R+  +  +
Sbjct: 50  SSSRNPNFSNRSNRRRNSNSEDDDDERRDKKH-------RLLHGLN--SHEGRDSSNSKS 100

Query: 81  NDGEYDSVWRRTATASASYN 22
             G+ DS  R       S N
Sbjct: 101 GGGDLDSDARNRRKIDGSDN 120


>At2g31940.1
          Length = 121

 Score = 25.8 bits (55), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 229 GSFVSAIFSTGEPESIHRVSGSPVGVA 309
           G  ++++    E ES++R  G+P GVA
Sbjct: 70  GGMMTSLIHLNERESLYRAGGTPWGVA 96


>At1g61850.1
          Length = 1266

 Score = 25.8 bits (55), Expect = 7.4
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -1

Query: 258  GGENGRHEGTTFRREKLYSEEEDDRKQ*KSHRTKKLCDRICNGLTTVSDEERNKHH*CNN 79
            G +NG+ E           EEED+ ++      ++  +      T  SD E + H   N 
Sbjct: 1163 GDQNGKFE---------IGEEEDEDEEVNEETEREEMEPP----TPTSDWEDSDHEKTNR 1209

Query: 78   DGEYDSVW 55
            DG+Y  +W
Sbjct: 1210 DGKYCGLW 1217


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,991,353
Number of Sequences: 28581
Number of extensions: 133403
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,141,370
effective HSP length: 88
effective length of database: 9,626,242
effective search space used: 385049680
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)