In the next folders are included the genomic data for Nicotiana tomentosiformis published by Sierro, et al. 2013 in Genome Biology.

assembly: includes a file, called Ntom_ASAG01.fa.gz, with the genome sequences in FASTA format (compressed using gzip) for the N.tomentosiformis genome scaffolds.

annotation: contains the FASTA files for the N.tomentosiformis genome, transcripts and proteins, and the gff3 files for the gene models predicted by Cufflinks, and BLAT mappings with tomato (ITAG 2.4), potato (PGSC) and arabidopsis thaliana (TAIR10).

Ntom.fasta.tar.gz                -> All annotation FASTA files compressed
Ntom_ASAG01_NTOM.cds.fna         -> coding sequences (CDS)
Ntom_ASAG01_NTOM.mrna.fna        -> mRNA (includes UTR)
Ntom_ASAG01_NTOM.proteins.faa    -> protein sequences

Ntom.gff3.tar.gz                 -> All gff3 files compressed
Ntom_ASAG01_NTOM_rnaseq.gff3     -> Cufflinks gene models
Ntom_ASAG01_itag_2.4_.80-80.gff3 -> BLAT mapping of tomato genes (ITAG 2.3) on N.tomentosiformis
Ntom_ASAG01_pgsc.80-80.gff3      -> BLAT mapping of potato genes (PGSC) on N.tomentosiformis
Ntom_ASAG01_tair10.80-60.gff3    -> BLAT mapping of A. thaliana genes (TAIR 10) on N.tomentosiformis

 =====================================================
 ASSEMBLY INFO
 =====================================================

 BioProject: PRJNA182501
 Assembly: GCA_000390325
 Level: scaffolds
 Taxid: 4098
 WGS: ASAF00000000
 Submission: Registration date: 10-May-2013
             Philip Morris International R&D

 Download Link:
 ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/plants/Nicotiana_tomentosiformis/Ntom_v01/
  
 =====================================================
 STATS
 =====================================================
 Total sequence length	    1,688,312,294 bp (1.7 Gb)
 Total assembly gap length     45,733,186 bp
 Gaps between scaffolds	                0
 Number of scaffolds	          159,548 sequences
 Longest scaffold length          789,565 bp
 Min. scaffold length                 200 bp
 Average scaffold size             10,582 bp
 Scaffold L90                      11,543 bp
 Scaffold N90                      24,457 sequences
 Scaffold L50	                   82,593 bp
 Scaffold N50                       5,852 sequences 
 Number of contigs        	  215,609 sequences
 Contig L50	                   34,051 bp
 =====================================================

 Raw reads are available through SRA Database:
 Submission: ERA214730
 Link: http://www.ncbi.nlm.nih.gov/sra?term=ERP002502


 Sierro, N. et al. Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis. Genome. Biol. 14, R60 (2013).