#Draft Tomato chromosome 1
#autogenerated-by SGN mummer/phrap AGP generator (bsub_assemble_bacs.pl)
S.lycopersicum-chr1	1	700000	1	N	700000	contig	no	
S.lycopersicum-chr1	700001	813577	2	F	C01HBa0053J01.2	1	113577	+
S.lycopersicum-chr1	813578	863577	3	N	50000	clone	yes	
S.lycopersicum-chr1	863578	943276	4	F	C01HBa0124N23.3	1	79699	+
S.lycopersicum-chr1	943277	1400000	5	N	456724	contig	no	
S.lycopersicum-chr1	1400001	1548884	6	F	C01HBa0162G22.6	1	148884	+
S.lycopersicum-chr1	1548885	1800000	7	N	251116	contig	no	
S.lycopersicum-chr1	1800001	1913103	8	F	C01HBa0267L02.1	1	113103	+
S.lycopersicum-chr1	1913104	1963103	9	N	50000	contig	no	
S.lycopersicum-chr1	1963104	2118556	10	F	C01HBa0130I12.1	1	155453	+
S.lycopersicum-chr1	2118557	2168556	11	N	50000	contig	no	
S.lycopersicum-chr1	2168557	2268536	12	F	C01HBa0291L11.1	1	99980	+
S.lycopersicum-chr1	2268537	2318536	13	N	50000	contig	no	
S.lycopersicum-chr1	2318537	2434009	14	F	C01HBa0095M15.3	1	115473	+
S.lycopersicum-chr1	2434010	2484009	15	N	50000	contig	no	
S.lycopersicum-chr1	2484010	2627288	16	F	C01HBa0305J13.1	1	143279	+
S.lycopersicum-chr1	2627289	2677288	17	N	50000	contig	no	
S.lycopersicum-chr1	2677289	2830756	18	F	C01HBa0069E17.1	1	153468	+
S.lycopersicum-chr1	2830757	2880756	19	N	50000	contig	no	
S.lycopersicum-chr1	2880757	2962232	20	F	C01HBa0262O22.1	1	81476	+
S.lycopersicum-chr1	2962233	3012232	21	N	50000	contig	no	
S.lycopersicum-chr1	3012233	3100963	22	F	C01HBa0240P19.1	1	88731	+
S.lycopersicum-chr1	3100964	3150963	23	N	50000	contig	no	
S.lycopersicum-chr1	3150964	3268626	24	F	C01HBa0032H01.1	1	117663	+
S.lycopersicum-chr1	3268627	3318626	25	N	50000	contig	no	
S.lycopersicum-chr1	3318627	3485234	26	F	C01HBa0006K08.1	1	166608	+
S.lycopersicum-chr1	3485235	3535234	27	N	50000	clone	yes	
S.lycopersicum-chr1	3535235	3621788	28	F	C01HBa0003D15.1	1	86554	+
S.lycopersicum-chr1	3621789	3720815	29	F	C01HBa0227K19.1	1	99027	-
S.lycopersicum-chr1	3720816	3770815	30	N	50000	contig	no	
S.lycopersicum-chr1	3770816	3959227	31	F	C01HBa0216G16.2	1	188412	+
S.lycopersicum-chr1	3959228	4009227	32	N	50000	contig	no	
S.lycopersicum-chr1	4009228	4162109	33	F	C01HBa0017P20.1	1	152882	+
S.lycopersicum-chr1	4162110	4212109	34	N	50000	contig	no	
S.lycopersicum-chr1	4212110	4340101	35	F	C01HBa0126F09.3	1	127992	+
S.lycopersicum-chr1	4340102	4390101	36	N	50000	contig	no	
S.lycopersicum-chr1	4390102	4560259	37	F	C01HBa0256E08.2	1	170158	+
S.lycopersicum-chr1	4560260	4610259	38	N	50000	contig	no	
S.lycopersicum-chr1	4610260	4764698	39	F	C01HBa0252G05.2	1	154439	+
S.lycopersicum-chr1	4764699	4814698	40	N	50000	contig	no	
S.lycopersicum-chr1	4814699	4948800	41	F	C01HBa0163B20.1	1	134102	+
S.lycopersicum-chr1	4948801	4998800	42	N	50000	contig	no	
S.lycopersicum-chr1	4998801	5137482	43	F	C01HBa0017L24.4	1	138682	+
S.lycopersicum-chr1	5137483	5187482	44	N	50000	contig	no	
S.lycopersicum-chr1	5187483	5318828	45	F	C01HBa0054N01.1	1	131346	+
S.lycopersicum-chr1	5318829	5368828	46	N	50000	contig	no	
S.lycopersicum-chr1	5368829	5533695	47	F	C01HBa0060A06.1	1	164867	+
S.lycopersicum-chr1	5533696	5583695	48	N	50000	contig	no	
S.lycopersicum-chr1	5583696	5686761	49	F	C01HBa0023H04.3	1	103066	+
S.lycopersicum-chr1	5686762	5736761	50	N	50000	clone	yes	
S.lycopersicum-chr1	5736762	5852263	51	F	C01SLm0003K12.3	1	115502	+
S.lycopersicum-chr1	5852264	5902263	52	N	50000	contig	no	
S.lycopersicum-chr1	5902264	6013556	53	F	C01HBa0033C15.1	1	111293	+
S.lycopersicum-chr1	6013557	6063556	54	N	50000	contig	no	
S.lycopersicum-chr1	6063557	6170108	55	F	C01HBa0305F14.1	1	106552	+
S.lycopersicum-chr1	6170109	6220108	56	N	50000	contig	no	
S.lycopersicum-chr1	6220109	6237474	57	F	C01HBa0109A21.1	1	17366	+
S.lycopersicum-chr1	6237475	6287474	58	N	50000	contig	no	
S.lycopersicum-chr1	6287475	6445301	59	F	C01HBa0210F09.1	1	157827	+
S.lycopersicum-chr1	6445302	6495301	60	N	50000	contig	no	
S.lycopersicum-chr1	6495302	6603099	61	F	C01HBa0155M04.1	1	107798	+
S.lycopersicum-chr1	6603100	6653099	62	N	50000	contig	no	
S.lycopersicum-chr1	6653100	6691008	63	F	C01HBa0271J03.1	1	37909	+
S.lycopersicum-chr1	6691009	6741008	64	N	50000	contig	no	
S.lycopersicum-chr1	6741009	6837719	65	F	C01HBa0055E23.1	1	96711	+
S.lycopersicum-chr1	6837720	6887719	66	N	50000	contig	no	
S.lycopersicum-chr1	6887720	7041485	67	F	C01HBa0017D14.1	1	153766	+
S.lycopersicum-chr1	7041486	7091485	68	N	50000	contig	no	
S.lycopersicum-chr1	7091486	7230738	69	F	C01HBa0168G04.1	1	139253	+
S.lycopersicum-chr1	7230739	7280738	70	N	50000	contig	no	
S.lycopersicum-chr1	7280739	7283063	71	F	C01HBa0223L21.2	1	2325	+
S.lycopersicum-chr1	7283064	7333063	72	N	50000	clone	yes	
S.lycopersicum-chr1	7333064	7440841	73	F	C01HBa0329A12.1	1	107778	+
S.lycopersicum-chr1	7440842	7490841	74	N	50000	contig	no	
S.lycopersicum-chr1	7490842	7602347	75	F	C01HBa0202L21.1	1	111506	+
S.lycopersicum-chr1	7602348	7652347	76	N	50000	contig	no	
S.lycopersicum-chr1	7652348	7687198	77	F	C01HBa0289N16.1	1	34851	+
S.lycopersicum-chr1	7687199	7750000	78	N	62802	contig	no	
S.lycopersicum-chr1	7750001	7904446	79	F	C01HBa0208M24.1	1	154446	+
S.lycopersicum-chr1	7904447	7954446	80	N	50000	contig	no	
S.lycopersicum-chr1	7954447	8063522	81	F	C01HBa0034P21.4	1	109076	+
S.lycopersicum-chr1	8063523	8825000	82	N	761478	contig	no	
S.lycopersicum-chr1	8825001	8904277	83	F	C01SLe0073O18.1	1	79277	+
S.lycopersicum-chr1	8904278	9027111	84	F	C01HBa0108J06.1	1	122834	-
S.lycopersicum-chr1	9027112	9057962	85	F	C01HBa0330O05.2	100775	131625	+
S.lycopersicum-chr1	9057963	9107962	86	N	50000	contig	no	
S.lycopersicum-chr1	9107963	9289059	87	F	C01HBa0276N05.2	1	181097	+
S.lycopersicum-chr1	9289060	9339059	88	N	50000	contig	no	
S.lycopersicum-chr1	9339060	9465367	89	F	C01HBa0140O23.1	1	126308	+
S.lycopersicum-chr1	9465368	9515367	90	N	50000	contig	no	
S.lycopersicum-chr1	9515368	9628678	91	F	C01HBa0309D12.1	1	113311	+
S.lycopersicum-chr1	9628679	9678678	92	N	50000	contig	no	
S.lycopersicum-chr1	9678679	9767966	93	F	C01HBa0126H21.1	1	89288	+
S.lycopersicum-chr1	9767967	9817966	94	N	50000	contig	no	
S.lycopersicum-chr1	9817967	9915106	95	F	C01HBa0203E06.1	20686	117825	-
S.lycopersicum-chr1	9915107	10020384	96	F	C01HBa0169H23.3	1	105278	+
S.lycopersicum-chr1	10020385	10070384	97	N	50000	contig	no	
S.lycopersicum-chr1	10070385	10109544	98	F	C01HBa0286K14.1	1	39160	+
S.lycopersicum-chr1	10109545	10159544	99	N	50000	clone	yes	
S.lycopersicum-chr1	10159545	10285793	100	F	C01HBa0319D11.1	1	126249	+
S.lycopersicum-chr1	10285794	10350000	101	N	64207	contig	no	
S.lycopersicum-chr1	10350001	10463672	102	F	C01HBa0057C07.1	1	113672	+
S.lycopersicum-chr1	10463673	10513672	103	N	50000	clone	yes	
S.lycopersicum-chr1	10513673	10637351	104	F	C01HBa0159C14.1	1	123679	+
S.lycopersicum-chr1	10637352	10700000	105	N	62649	contig	no	
S.lycopersicum-chr1	10700001	10755075	106	F	C01HBa0123A07.3	1	55075	+
S.lycopersicum-chr1	10755076	10900000	107	N	144925	contig	no	
S.lycopersicum-chr1	10900001	11037173	108	F	C01HBa0051C14.1	1	137173	+
S.lycopersicum-chr1	11037174	11087173	109	N	50000	clone	yes	
S.lycopersicum-chr1	11087174	11121914	110	F	C01HBa0051L08.1	1	34741	+
S.lycopersicum-chr1	11121915	11570000	111	N	448086	contig	no	
S.lycopersicum-chr1	11570001	11680693	112	F	C01HBa0005L21.3	30192	140884	-
S.lycopersicum-chr1	11680694	11710888	113	F	C01HBa0066C18.1	1365	31559	+
S.lycopersicum-chr1	11710889	11790728	114	F	C01HBa0034L01.1	30198	110037	+
S.lycopersicum-chr1	11790729	11840728	115	N	50000	contig	no	
S.lycopersicum-chr1	11840729	11983847	116	F	C01HBa0001H15.2	1	143119	+
S.lycopersicum-chr1	11983848	12033847	117	N	50000	clone	yes	
S.lycopersicum-chr1	12033848	12188670	118	F	C01HBa0057A01.2	1	154823	+
S.lycopersicum-chr1	12188671	12238670	119	N	50000	clone	yes	
S.lycopersicum-chr1	12238671	12322033	120	F	C01HBa0131O24.1	1	83363	+
S.lycopersicum-chr1	12322034	12337033	121	F	C01HBa0224I06.1	1	15000	+
S.lycopersicum-chr1	12337034	12499403	122	F	C01SLe0046A02.1	3	162372	+
S.lycopersicum-chr1	12499404	12549403	123	N	50000	contig	no	
S.lycopersicum-chr1	12549404	12671954	124	F	C01HBa0111D21.1	1	122551	+
S.lycopersicum-chr1	12671955	12721954	125	N	50000	contig	no	
S.lycopersicum-chr1	12721955	12870039	126	F	C01HBa0043D23.2	1	148085	+
S.lycopersicum-chr1	12870040	12920039	127	N	50000	contig	no	
S.lycopersicum-chr1	12920040	13026837	128	F	C01HBa0164M23.2	1	106798	+
S.lycopersicum-chr1	13026838	13076837	129	N	50000	contig	no	
S.lycopersicum-chr1	13076838	13218929	130	F	C01HBa0001M12.2	1	142092	+
S.lycopersicum-chr1	13218930	13268929	131	N	50000	contig	no	
S.lycopersicum-chr1	13268930	13376446	132	F	C01SLe0091G05.1	1	107517	+
S.lycopersicum-chr1	13376447	13426446	133	N	50000	clone	yes	
S.lycopersicum-chr1	13426447	13530657	134	F	C01HBa0024O06.1	1	104211	+
S.lycopersicum-chr1	13530694	13596276	135	F	C01HBa0102N10.1	57365	122947	+
S.lycopersicum-chr1	13596277	13646276	136	N	50000	contig	no	
S.lycopersicum-chr1	13646277	13774487	137	F	C01HBa0040P20.1	1	128211	+
S.lycopersicum-chr1	13774488	13824487	138	N	50000	clone	yes	
S.lycopersicum-chr1	13824488	13953712	139	F	C01HBa0245N21.3	1	129225	+
S.lycopersicum-chr1	13953713	14003712	140	N	50000	clone	yes	
S.lycopersicum-chr1	14003713	14010752	141	F	C01HBa0210O18.4	90698	97737	-
S.lycopersicum-chr1	14010753	14010891	142	F	C01HBa0010D01.3	7041	7179	+
S.lycopersicum-chr1	14010892	14101449	143	F	C01HBa0210O18.4	1	90558	-
S.lycopersicum-chr1	14101450	14151449	144	N	50000	clone	yes	
S.lycopersicum-chr1	14151450	14268308	145	F	C01HBa0222E21.2	1	116859	+
S.lycopersicum-chr1	14268311	14355635	146	F	C01HBa0010F03.2	67647	154971	+
S.lycopersicum-chr1	14355636	14405635	147	N	50000	contig	no	
S.lycopersicum-chr1	14405636	14539895	148	F	C01HBa0057J16.2	1	134260	+
S.lycopersicum-chr1	14539896	14589895	149	N	50000	contig	no	
S.lycopersicum-chr1	14589896	14715102	150	F	C01HBa0037D10.2	1	125207	+
S.lycopersicum-chr1	14715103	14765102	151	N	50000	contig	no	
S.lycopersicum-chr1	14765103	14835096	152	F	C01SLm0043E01.6	1	69994	+
S.lycopersicum-chr1	14835097	14885096	153	N	50000	clone	yes	
S.lycopersicum-chr1	14885097	15006339	154	F	C01HBa0079N04.1	81	121323	-
S.lycopersicum-chr1	15006340	15109027	155	F	C01HBa0033M02.1	30911	133598	+
S.lycopersicum-chr1	15109028	15159027	156	N	50000	clone	yes	
S.lycopersicum-chr1	15159028	15187574	157	F	C01HBa0100K15.7	1	28547	+
S.lycopersicum-chr1	15187575	15296670	158	F	C01HBa0156I17.1	1	109096	+
S.lycopersicum-chr1	15296671	15346670	159	N	50000	clone	yes	
S.lycopersicum-chr1	15346671	15620101	160	F	C01HBa0183G03.2	1	273431	+
S.lycopersicum-chr1	15620112	15633286	161	F	C01HBa0071F18.1	140946	154120	+
S.lycopersicum-chr1	15633287	15683286	162	N	50000	clone	yes	
S.lycopersicum-chr1	15683287	15750806	163	F	C01HBa0100N21.1	1	67520	+
S.lycopersicum-chr1	15750807	15800806	164	N	50000	contig	no	
S.lycopersicum-chr1	15800807	15926008	165	F	C01HBa0092H13.2	1	125202	+
S.lycopersicum-chr1	15926009	15976008	166	N	50000	contig	no	
S.lycopersicum-chr1	15976009	16029573	167	F	C01HBa0239E07.2	1	53565	+
S.lycopersicum-chr1	16029574	16079573	168	N	50000	contig	no	
S.lycopersicum-chr1	16079574	16213760	169	F	C01HBa0008L19.1	1	134187	+
S.lycopersicum-chr1	16213761	16263760	170	N	50000	contig	no	
S.lycopersicum-chr1	16263761	16369323	171	F	C01HBa0131F15.2	1	105563	+
S.lycopersicum-chr1	16369324	16419323	172	N	50000	contig	no	
S.lycopersicum-chr1	16419324	16452932	173	F	C01HBa0023C06.1	1	33609	+
S.lycopersicum-chr1	16452933	16502932	174	N	50000	contig	no	
S.lycopersicum-chr1	16502933	16617322	175	F	C01HBa0138H16.5	1	114390	+
S.lycopersicum-chr1	16617323	16667322	176	N	50000	clone	yes	
S.lycopersicum-chr1	16667323	16768278	177	F	C01HBa0025N22.5	1	100956	+
S.lycopersicum-chr1	16768288	16778409	178	F	C01SLe0056L16.5	37666	47787	+
S.lycopersicum-chr1	16778410	16828409	179	N	50000	contig	no	
S.lycopersicum-chr1	16828410	16970049	180	F	C01HBa0031F12.1	1	141640	+
S.lycopersicum-chr1	16970050	17020049	181	N	50000	contig	no	
S.lycopersicum-chr1	17020050	17046658	182	F	C01HBa0216F22.2	1	26609	+
S.lycopersicum-chr1	17046659	17096658	183	N	50000	contig	no	
S.lycopersicum-chr1	17096659	17208395	184	F	C01HBa0088L02.2	1	111737	+
S.lycopersicum-chr1	17208396	17258395	185	N	50000	clone	yes	
S.lycopersicum-chr1	17258396	17394795	186	F	C01HBa0219G05.1	1	136400	+
S.lycopersicum-chr1	17394796	17444795	187	N	50000	clone	yes	
S.lycopersicum-chr1	17444796	17568583	188	F	C01HBa0119I16.1	1	123788	-
S.lycopersicum-chr1	17568584	17647557	189	F	C01HBa0009A08.1	74676	153649	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr1	17647558	60000000	190	N	42352443	contig	no	
S.lycopersicum-chr1	60000001	60115926	191	F	C01HBa0035C08.5	1	115926	+
S.lycopersicum-chr1	60115927	60165926	192	N	50000	contig	no	
S.lycopersicum-chr1	60165927	60313440	193	F	C01HBa0222O04.4	1	147514	+
S.lycopersicum-chr1	60313441	60363440	194	N	50000	contig	no	
S.lycopersicum-chr1	60363441	60463235	195	F	C01HBa0005I04.1	1	99795	+
S.lycopersicum-chr1	60463236	60513235	196	N	50000	contig	no	
S.lycopersicum-chr1	60513236	60641274	197	F	C01HBa0101I08.4	1	128039	+
S.lycopersicum-chr1	60641275	60691274	198	N	50000	contig	no	
S.lycopersicum-chr1	60691275	60848856	199	F	C01HBa0250C18.1	1	157582	+
S.lycopersicum-chr1	60848857	60898856	200	N	50000	contig	no	
S.lycopersicum-chr1	60898857	61032813	201	F	C01SLm0026F20.1	1	133957	+
S.lycopersicum-chr1	61032814	61082813	202	N	50000	contig	no	
S.lycopersicum-chr1	61082814	61147202	203	F	C01HBa0219P14.1	1	64389	+
S.lycopersicum-chr1	61147203	61197202	204	N	50000	contig	no	
S.lycopersicum-chr1	61197203	61288790	205	F	C01SLm0086H10.1	1	91588	+
S.lycopersicum-chr1	61288791	61338790	206	N	50000	contig	no	
S.lycopersicum-chr1	61338791	61374668	207	F	C01HBa0207N06.3	1	35878	+
S.lycopersicum-chr1	61374669	61424668	208	N	50000	contig	no	
S.lycopersicum-chr1	61424669	61518128	209	F	C01SLe0130D04.1	1	93460	+
S.lycopersicum-chr1	61518129	61568128	210	N	50000	contig	no	
S.lycopersicum-chr1	61568129	61613762	211	F	C01HBa0152E17.1	1	45634	+
S.lycopersicum-chr1	61613763	61663762	212	N	50000	contig	no	
S.lycopersicum-chr1	61663763	61785898	213	F	C01HBa0071F06.3	1	122136	+
S.lycopersicum-chr1	61785899	61835898	214	N	50000	contig	no	
S.lycopersicum-chr1	61835899	61921986	215	F	C01SLe0044L03.1	1	86088	+
S.lycopersicum-chr1	61921987	61971986	216	N	50000	contig	no	
S.lycopersicum-chr1	61971987	62132719	217	F	C01HBa0100N04.1	1	160733	+
S.lycopersicum-chr1	62132720	62182719	218	N	50000	contig	no	
S.lycopersicum-chr1	62182720	62279963	219	F	C01HBa0166M21.7	1	97244	+
S.lycopersicum-chr1	62279964	62329963	220	N	50000	contig	no	
S.lycopersicum-chr1	62329964	62423299	221	F	C01HBa0182J03.1	1	93336	+
S.lycopersicum-chr1	62423300	62473299	222	N	50000	contig	no	
S.lycopersicum-chr1	62473300	62577501	223	F	C01SLe0072A14.3	1	104202	+
S.lycopersicum-chr1	62577502	62627501	224	N	50000	contig	no	
S.lycopersicum-chr1	62627502	62689181	225	F	C01HBa0177M18.2	1	61680	+
S.lycopersicum-chr1	62689182	62739181	226	N	50000	contig	no	
S.lycopersicum-chr1	62739182	62812326	227	F	C01HBa0137B04.4	1	73145	+
S.lycopersicum-chr1	62812327	62862326	228	N	50000	contig	no	
S.lycopersicum-chr1	62862327	62976316	229	F	C01HBa0040I23.2	1	113990	+
S.lycopersicum-chr1	62976317	63026316	230	N	50000	contig	no	
S.lycopersicum-chr1	63026317	63049614	231	F	C01HBa0009C22.1	1	23298	+
S.lycopersicum-chr1	63049615	63099614	232	N	50000	contig	no	
S.lycopersicum-chr1	63099615	63228624	233	F	C01HBa0037A16.7	1	129010	+
S.lycopersicum-chr1	63228625	63278624	234	N	50000	contig	no	
S.lycopersicum-chr1	63278625	63361844	235	F	C01HBa0016E02.5	1	83220	+
S.lycopersicum-chr1	63361845	63411844	236	N	50000	clone	yes	
S.lycopersicum-chr1	63411845	63508840	237	F	C01HBa0064D24.5	1	96996	+
S.lycopersicum-chr1	63508841	63558840	238	N	50000	contig	no	
S.lycopersicum-chr1	63558841	63665254	239	F	C01HBa0212H22.2	1	106414	+
S.lycopersicum-chr1	63665255	63715254	240	N	50000	clone	yes	
S.lycopersicum-chr1	63715255	63800967	241	F	C01SLm0018B20.4	1	85713	+
S.lycopersicum-chr1	63800968	63850967	242	N	50000	clone	yes	
S.lycopersicum-chr1	63850968	63944121	243	F	C01SLm0130O13.4	1	93154	+