#Draft Tomato chromosome 1
#autogenerated-by SGN mummer/phrap AGP generator (bsub_assemble_bacs.pl)
S.lycopersicum-chr1	1	700000	1	N	700000	contig	no	
S.lycopersicum-chr1	700001	813577	2	F	C01HBa0053J01.2	1	113577	+
S.lycopersicum-chr1	813578	863577	3	N	50000	clone	yes	
S.lycopersicum-chr1	863578	943276	4	F	C01HBa0124N23.3	1	79699	+
S.lycopersicum-chr1	943277	1400000	5	N	456724	contig	no	
S.lycopersicum-chr1	1400001	1548660	6	F	C01HBa0162G22.7	1	148660	+
S.lycopersicum-chr1	1548661	1800000	7	N	251340	contig	no	
S.lycopersicum-chr1	1800001	1913103	8	F	C01HBa0267L02.1	1	113103	+
S.lycopersicum-chr1	1913104	1963103	9	N	50000	contig	no	
S.lycopersicum-chr1	1963104	2118556	10	F	C01HBa0130I12.1	1	155453	+
S.lycopersicum-chr1	2118557	2168556	11	N	50000	contig	no	
S.lycopersicum-chr1	2168557	2268536	12	F	C01HBa0291L11.1	1	99980	+
S.lycopersicum-chr1	2268537	2318536	13	N	50000	contig	no	
S.lycopersicum-chr1	2318537	2434009	14	F	C01HBa0095M15.3	1	115473	+
S.lycopersicum-chr1	2434010	2484009	15	N	50000	contig	no	
S.lycopersicum-chr1	2484010	2627288	16	F	C01HBa0305J13.1	1	143279	+
S.lycopersicum-chr1	2627289	2677288	17	N	50000	contig	no	
S.lycopersicum-chr1	2677289	2830756	18	F	C01HBa0069E17.1	1	153468	+
S.lycopersicum-chr1	2830757	2880756	19	N	50000	contig	no	
S.lycopersicum-chr1	2880757	2962232	20	F	C01HBa0262O22.1	1	81476	+
S.lycopersicum-chr1	2962233	3012232	21	N	50000	contig	no	
S.lycopersicum-chr1	3012233	3100963	22	F	C01HBa0240P19.1	1	88731	+
S.lycopersicum-chr1	3100964	3150963	23	N	50000	contig	no	
S.lycopersicum-chr1	3150964	3268626	24	F	C01HBa0032H01.1	1	117663	+
S.lycopersicum-chr1	3268627	3318626	25	N	50000	contig	no	
S.lycopersicum-chr1	3318627	3485234	26	F	C01HBa0006K08.1	1	166608	+
S.lycopersicum-chr1	3485235	3535234	27	N	50000	clone	yes	
S.lycopersicum-chr1	3535235	3621788	28	F	C01HBa0003D15.1	1	86554	+
S.lycopersicum-chr1	3621789	3720815	29	F	C01HBa0227K19.1	1	99027	-
S.lycopersicum-chr1	3720816	3770815	30	N	50000	contig	no	
S.lycopersicum-chr1	3770816	3959227	31	F	C01HBa0216G16.2	1	188412	+
S.lycopersicum-chr1	3959228	4009227	32	N	50000	contig	no	
S.lycopersicum-chr1	4009228	4162109	33	F	C01HBa0017P20.1	1	152882	+
S.lycopersicum-chr1	4162110	4212109	34	N	50000	contig	no	
S.lycopersicum-chr1	4212110	4340101	35	F	C01HBa0126F09.3	1	127992	+
S.lycopersicum-chr1	4340102	4390101	36	N	50000	contig	no	
S.lycopersicum-chr1	4390102	4560259	37	F	C01HBa0256E08.2	1	170158	+
S.lycopersicum-chr1	4560260	4610259	38	N	50000	contig	no	
S.lycopersicum-chr1	4610260	4764698	39	F	C01HBa0252G05.2	1	154439	+
S.lycopersicum-chr1	4764699	4814698	40	N	50000	contig	no	
S.lycopersicum-chr1	4814699	4948800	41	F	C01HBa0163B20.1	1	134102	+
S.lycopersicum-chr1	4948801	4998800	42	N	50000	contig	no	
S.lycopersicum-chr1	4998801	5137482	43	F	C01HBa0017L24.4	1	138682	+
S.lycopersicum-chr1	5137483	5187482	44	N	50000	contig	no	
S.lycopersicum-chr1	5187483	5318828	45	F	C01HBa0054N01.1	1	131346	+
S.lycopersicum-chr1	5318829	5368828	46	N	50000	contig	no	
S.lycopersicum-chr1	5368829	5533695	47	F	C01HBa0060A06.1	1	164867	+
S.lycopersicum-chr1	5533696	5583695	48	N	50000	contig	no	
S.lycopersicum-chr1	5583696	5686761	49	F	C01HBa0023H04.3	1	103066	+
S.lycopersicum-chr1	5686762	5736761	50	N	50000	clone	yes	
S.lycopersicum-chr1	5736762	5852263	51	F	C01SLm0003K12.3	1	115502	+
S.lycopersicum-chr1	5852264	5902263	52	N	50000	contig	no	
S.lycopersicum-chr1	5902264	6013556	53	F	C01HBa0033C15.1	1	111293	+
S.lycopersicum-chr1	6013557	6063556	54	N	50000	contig	no	
S.lycopersicum-chr1	6063557	6170108	55	F	C01HBa0305F14.1	1	106552	+
S.lycopersicum-chr1	6170109	6220108	56	N	50000	contig	no	
S.lycopersicum-chr1	6220109	6237474	57	F	C01HBa0109A21.1	1	17366	+
S.lycopersicum-chr1	6237475	6287474	58	N	50000	contig	no	
S.lycopersicum-chr1	6287475	6325383	59	F	C01HBa0271J03.1	1	37909	+
S.lycopersicum-chr1	6325384	6375383	60	N	50000	contig	no	
S.lycopersicum-chr1	6375384	6483181	61	F	C01HBa0155M04.1	1	107798	+
S.lycopersicum-chr1	6483182	6533181	62	N	50000	contig	no	
S.lycopersicum-chr1	6533182	6691008	63	F	C01HBa0210F09.1	1	157827	+
S.lycopersicum-chr1	6691009	6741008	64	N	50000	contig	no	
S.lycopersicum-chr1	6741009	6837719	65	F	C01HBa0055E23.1	1	96711	+
S.lycopersicum-chr1	6837720	6887719	66	N	50000	contig	no	
S.lycopersicum-chr1	6887720	7041485	67	F	C01HBa0017D14.1	1	153766	+
S.lycopersicum-chr1	7041486	7091485	68	N	50000	contig	no	
S.lycopersicum-chr1	7091486	7230738	69	F	C01HBa0168G04.1	1	139253	+
S.lycopersicum-chr1	7230739	7280738	70	N	50000	contig	no	
S.lycopersicum-chr1	7280739	7388516	71	F	C01HBa0329A12.1	1	107778	+
S.lycopersicum-chr1	7388517	7438516	72	N	50000	contig	no	
S.lycopersicum-chr1	7438517	7550022	73	F	C01HBa0202L21.1	1	111506	+
S.lycopersicum-chr1	7550023	7600022	74	N	50000	contig	no	
S.lycopersicum-chr1	7600023	7634873	75	F	C01HBa0289N16.1	1	34851	+
S.lycopersicum-chr1	7634874	7750000	76	N	115127	contig	no	
S.lycopersicum-chr1	7750001	7904446	77	F	C01HBa0208M24.1	1	154446	+
S.lycopersicum-chr1	7904447	7954446	78	N	50000	contig	no	
S.lycopersicum-chr1	7954447	8063522	79	F	C01HBa0034P21.4	1	109076	+
S.lycopersicum-chr1	8063523	8825000	80	N	761478	contig	no	
S.lycopersicum-chr1	8825001	8904277	81	F	C01SLe0073O18.1	1	79277	+
S.lycopersicum-chr1	8904278	9027111	82	F	C01HBa0108J06.1	1	122834	-
S.lycopersicum-chr1	9027112	9057962	83	F	C01HBa0330O05.2	100775	131625	+
S.lycopersicum-chr1	9057963	9107962	84	N	50000	contig	no	
S.lycopersicum-chr1	9107963	9289059	85	F	C01HBa0276N05.2	1	181097	+
S.lycopersicum-chr1	9289060	9339059	86	N	50000	contig	no	
S.lycopersicum-chr1	9339060	9465367	87	F	C01HBa0140O23.1	1	126308	+
S.lycopersicum-chr1	9465368	9515367	88	N	50000	contig	no	
S.lycopersicum-chr1	9515368	9628678	89	F	C01HBa0309D12.1	1	113311	+
S.lycopersicum-chr1	9628679	9678678	90	N	50000	contig	no	
S.lycopersicum-chr1	9678679	9767966	91	F	C01HBa0126H21.1	1	89288	+
S.lycopersicum-chr1	9767967	9817966	92	N	50000	contig	no	
S.lycopersicum-chr1	9817967	9915106	93	F	C01HBa0203E06.1	20686	117825	-
S.lycopersicum-chr1	9915107	10020831	94	F	C01HBa0169H23.4	1	105725	+
S.lycopersicum-chr1	10020832	10070831	95	N	50000	contig	no	
S.lycopersicum-chr1	10070832	10109991	96	F	C01HBa0286K14.1	1	39160	+
S.lycopersicum-chr1	10109992	10159991	97	N	50000	clone	yes	
S.lycopersicum-chr1	10159992	10286240	98	F	C01HBa0319D11.1	1	126249	+
S.lycopersicum-chr1	10286241	10350000	99	N	63760	contig	no	
S.lycopersicum-chr1	10350001	10463672	100	F	C01HBa0057C07.1	1	113672	+
S.lycopersicum-chr1	10463673	10513672	101	N	50000	clone	yes	
S.lycopersicum-chr1	10513673	10637351	102	F	C01HBa0159C14.1	1	123679	+
S.lycopersicum-chr1	10637352	10700000	103	N	62649	contig	no	
S.lycopersicum-chr1	10700001	10755075	104	F	C01HBa0123A07.3	1	55075	+
S.lycopersicum-chr1	10755076	10900000	105	N	144925	contig	no	
S.lycopersicum-chr1	10900001	11037173	106	F	C01HBa0051C14.1	1	137173	+
S.lycopersicum-chr1	11037174	11087173	107	N	50000	clone	yes	
S.lycopersicum-chr1	11087174	11121914	108	F	C01HBa0051L08.1	1	34741	+
S.lycopersicum-chr1	11121915	11570000	109	N	448086	contig	no	
S.lycopersicum-chr1	11570001	11680693	110	F	C01HBa0005L21.3	30192	140884	-
S.lycopersicum-chr1	11680694	11710888	111	F	C01HBa0066C18.1	1365	31559	+
S.lycopersicum-chr1	11710889	11790728	112	F	C01HBa0034L01.1	30198	110037	+
S.lycopersicum-chr1	11790729	11840728	113	N	50000	contig	no	
S.lycopersicum-chr1	11840729	11983847	114	F	C01HBa0001H15.2	1	143119	+
S.lycopersicum-chr1	11983848	12033847	115	N	50000	clone	yes	
S.lycopersicum-chr1	12033848	12188670	116	F	C01HBa0057A01.2	1	154823	+
S.lycopersicum-chr1	12188671	12238670	117	N	50000	clone	yes	
S.lycopersicum-chr1	12238671	12322033	118	F	C01HBa0131O24.1	1	83363	+
S.lycopersicum-chr1	12322034	12336642	119	F	C01HBa0224I06.1	1	14609	+
S.lycopersicum-chr1	12336643	12499206	120	F	C01SLe0046A02.2	3	162566	+
S.lycopersicum-chr1	12499207	12549206	121	N	50000	contig	no	
S.lycopersicum-chr1	12549207	12671757	122	F	C01HBa0111D21.1	1	122551	+
S.lycopersicum-chr1	12671758	12721757	123	N	50000	contig	no	
S.lycopersicum-chr1	12721758	12869842	124	F	C01HBa0043D23.2	1	148085	+
S.lycopersicum-chr1	12869843	12919842	125	N	50000	contig	no	
S.lycopersicum-chr1	12919843	13026640	126	F	C01HBa0164M23.2	1	106798	+
S.lycopersicum-chr1	13026641	13076640	127	N	50000	contig	no	
S.lycopersicum-chr1	13076641	13218732	128	F	C01HBa0001M12.2	1	142092	+
S.lycopersicum-chr1	13218733	13268732	129	N	50000	contig	no	
S.lycopersicum-chr1	13268733	13376249	130	F	C01SLe0091G05.1	1	107517	+
S.lycopersicum-chr1	13376250	13426249	131	N	50000	clone	yes	
S.lycopersicum-chr1	13426250	13530460	132	F	C01HBa0024O06.1	1	104211	+
S.lycopersicum-chr1	13530497	13596079	133	F	C01HBa0102N10.1	57365	122947	+
S.lycopersicum-chr1	13596080	13646079	134	N	50000	contig	no	
S.lycopersicum-chr1	13646080	13774290	135	F	C01HBa0040P20.1	1	128211	+
S.lycopersicum-chr1	13774291	13824290	136	N	50000	clone	yes	
S.lycopersicum-chr1	13824291	13953515	137	F	C01HBa0245N21.3	1	129225	+
S.lycopersicum-chr1	13953516	14003515	138	N	50000	clone	yes	
S.lycopersicum-chr1	14003516	14010555	139	F	C01HBa0210O18.4	90698	97737	-
S.lycopersicum-chr1	14010556	14010694	140	F	C01HBa0010D01.3	7041	7179	+
S.lycopersicum-chr1	14010695	14101252	141	F	C01HBa0210O18.4	1	90558	-
S.lycopersicum-chr1	14101253	14151252	142	N	50000	clone	yes	
S.lycopersicum-chr1	14151253	14268111	143	F	C01HBa0222E21.2	1	116859	+
S.lycopersicum-chr1	14268114	14355438	144	F	C01HBa0010F03.2	67647	154971	+
S.lycopersicum-chr1	14355439	14405438	145	N	50000	contig	no	
S.lycopersicum-chr1	14405439	14539698	146	F	C01HBa0057J16.2	1	134260	+
S.lycopersicum-chr1	14539699	14589698	147	N	50000	contig	no	
S.lycopersicum-chr1	14589699	14714905	148	F	C01HBa0037D10.2	1	125207	+
S.lycopersicum-chr1	14714906	14764905	149	N	50000	contig	no	
S.lycopersicum-chr1	14764906	14834899	150	F	C01SLm0043E01.6	1	69994	+
S.lycopersicum-chr1	14834900	14884899	151	N	50000	clone	yes	
S.lycopersicum-chr1	14884900	15006142	152	F	C01HBa0079N04.1	81	121323	-
S.lycopersicum-chr1	15006143	15108830	153	F	C01HBa0033M02.1	30911	133598	+
S.lycopersicum-chr1	15108831	15158830	154	N	50000	clone	yes	
S.lycopersicum-chr1	15158831	15187377	155	F	C01HBa0100K15.7	1	28547	+
S.lycopersicum-chr1	15187378	15296473	156	F	C01HBa0156I17.1	1	109096	+
S.lycopersicum-chr1	15296474	15346473	157	N	50000	clone	yes	
S.lycopersicum-chr1	15346474	15619904	158	F	C01HBa0183G03.2	1	273431	+
S.lycopersicum-chr1	15619915	15633089	159	F	C01HBa0071F18.1	140946	154120	+
S.lycopersicum-chr1	15633090	15683089	160	N	50000	clone	yes	
S.lycopersicum-chr1	15683090	15750609	161	F	C01HBa0100N21.1	1	67520	+
S.lycopersicum-chr1	15750610	15800609	162	N	50000	contig	no	
S.lycopersicum-chr1	15800610	15925811	163	F	C01HBa0092H13.2	1	125202	+
S.lycopersicum-chr1	15925812	15975811	164	N	50000	contig	no	
S.lycopersicum-chr1	15975812	16029376	165	F	C01HBa0239E07.2	1	53565	+
S.lycopersicum-chr1	16029377	16079376	166	N	50000	contig	no	
S.lycopersicum-chr1	16079377	16213563	167	F	C01HBa0008L19.1	1	134187	+
S.lycopersicum-chr1	16213564	16263563	168	N	50000	contig	no	
S.lycopersicum-chr1	16263564	16369126	169	F	C01HBa0131F15.2	1	105563	+
S.lycopersicum-chr1	16369127	16419126	170	N	50000	contig	no	
S.lycopersicum-chr1	16419127	16452735	171	F	C01HBa0023C06.1	1	33609	+
S.lycopersicum-chr1	16452736	16502735	172	N	50000	contig	no	
S.lycopersicum-chr1	16502736	16617125	173	F	C01HBa0138H16.5	1	114390	+
S.lycopersicum-chr1	16617126	16667125	174	N	50000	clone	yes	
S.lycopersicum-chr1	16667126	16768081	175	F	C01HBa0025N22.5	1	100956	+
S.lycopersicum-chr1	16768091	16778212	176	F	C01SLe0056L16.5	37666	47787	+
S.lycopersicum-chr1	16778213	16828212	177	N	50000	contig	no	
S.lycopersicum-chr1	16828213	16969852	178	F	C01HBa0031F12.1	1	141640	+
S.lycopersicum-chr1	16969853	17019852	179	N	50000	contig	no	
S.lycopersicum-chr1	17019853	17046461	180	F	C01HBa0216F22.2	1	26609	+
S.lycopersicum-chr1	17046462	17096461	181	N	50000	contig	no	
S.lycopersicum-chr1	17096462	17208198	182	F	C01HBa0088L02.2	1	111737	+
S.lycopersicum-chr1	17208199	17258198	183	N	50000	clone	yes	
S.lycopersicum-chr1	17258199	17394598	184	F	C01HBa0219G05.1	1	136400	+
S.lycopersicum-chr1	17394599	17444598	185	N	50000	clone	yes	
S.lycopersicum-chr1	17444599	17568386	186	F	C01HBa0119I16.1	1	123788	-
S.lycopersicum-chr1	17568387	17647360	187	F	C01HBa0009A08.1	74676	153649	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr1	17647361	60000000	188	N	42352640	contig	no	
S.lycopersicum-chr1	60000001	60091588	189	F	C01SLm0086H10.1	1	91588	+
S.lycopersicum-chr1	60091589	60141588	190	N	50000	contig	no	
S.lycopersicum-chr1	60141589	60299170	191	F	C01HBa0250C18.1	1	157582	+
S.lycopersicum-chr1	60299171	60349170	192	N	50000	contig	no	
S.lycopersicum-chr1	60349171	60448965	193	F	C01HBa0005I04.1	1	99795	+
S.lycopersicum-chr1	60448966	60498965	194	N	50000	contig	no	
S.lycopersicum-chr1	60498966	60627004	195	F	C01HBa0101I08.4	1	128039	+
S.lycopersicum-chr1	60627005	60677004	196	N	50000	contig	no	
S.lycopersicum-chr1	60677005	60781206	197	F	C01SLe0072A14.3	1	104202	+
S.lycopersicum-chr1	60781207	60831206	198	N	50000	contig	no	
S.lycopersicum-chr1	60831207	60928450	199	F	C01HBa0166M21.8	1	97244	+
S.lycopersicum-chr1	60928451	60978450	200	N	50000	contig	no	
S.lycopersicum-chr1	60978451	61071910	201	F	C01SLe0130D04.1	1	93460	+
S.lycopersicum-chr1	61071911	61121910	202	N	50000	contig	no	
S.lycopersicum-chr1	61121911	61269424	203	F	C01HBa0222O04.4	1	147514	+
S.lycopersicum-chr1	61269425	61319424	204	N	50000	contig	no	
S.lycopersicum-chr1	61319425	61404881	205	F	C01HBa0223L21.5	1	85457	+
S.lycopersicum-chr1	61404882	61454881	206	N	50000	contig	no	
S.lycopersicum-chr1	61454882	61500515	207	F	C01HBa0152E17.1	1	45634	+
S.lycopersicum-chr1	61500516	61550515	208	N	50000	contig	no	
S.lycopersicum-chr1	61550516	61675984	209	F	C01HBa0037A16.8	1	125469	+
S.lycopersicum-chr1	61675985	61725984	210	N	50000	contig	no	
S.lycopersicum-chr1	61725985	61761862	211	F	C01HBa0207N06.3	1	35878	+
S.lycopersicum-chr1	61761863	61811862	212	N	50000	contig	no	
S.lycopersicum-chr1	61811863	61972595	213	F	C01HBa0100N04.1	1	160733	+
S.lycopersicum-chr1	61972596	62022595	214	N	50000	contig	no	
S.lycopersicum-chr1	62022596	62156552	215	F	C01SLm0026F20.1	1	133957	+
S.lycopersicum-chr1	62156553	62206552	216	N	50000	contig	no	
S.lycopersicum-chr1	62206553	62268232	217	F	C01HBa0177M18.2	1	61680	+
S.lycopersicum-chr1	62268233	62318232	218	N	50000	contig	no	
S.lycopersicum-chr1	62318233	62411568	219	F	C01HBa0182J03.1	1	93336	+
S.lycopersicum-chr1	62411569	62461568	220	N	50000	contig	no	
S.lycopersicum-chr1	62461569	62577494	221	F	C01HBa0035C08.5	1	115926	+
S.lycopersicum-chr1	62577495	62627494	222	N	50000	contig	no	
S.lycopersicum-chr1	62627495	62713582	223	F	C01SLe0044L03.1	1	86088	+
S.lycopersicum-chr1	62713583	62763582	224	N	50000	contig	no	
S.lycopersicum-chr1	62763583	62885718	225	F	C01HBa0071F06.3	1	122136	+
S.lycopersicum-chr1	62885719	62935718	226	N	50000	contig	no	
S.lycopersicum-chr1	62935719	63008863	227	F	C01HBa0137B04.4	1	73145	+
S.lycopersicum-chr1	63008864	63058863	228	N	50000	contig	no	
S.lycopersicum-chr1	63058864	63172853	229	F	C01HBa0040I23.2	1	113990	+
S.lycopersicum-chr1	63172854	63222853	230	N	50000	contig	no	
S.lycopersicum-chr1	63222854	63246151	231	F	C01HBa0009C22.1	1	23298	+
S.lycopersicum-chr1	63246152	63296151	232	N	50000	contig	no	
S.lycopersicum-chr1	63296152	63360540	233	F	C01HBa0219P14.1	1	64389	+
S.lycopersicum-chr1	63360541	63410540	234	N	50000	contig	no	
S.lycopersicum-chr1	63410541	63493760	235	F	C01HBa0016E02.5	1	83220	+
S.lycopersicum-chr1	63493761	63543760	236	N	50000	clone	yes	
S.lycopersicum-chr1	63543761	63640756	237	F	C01HBa0064D24.5	1	96996	+
S.lycopersicum-chr1	63640757	63690756	238	N	50000	contig	no	
S.lycopersicum-chr1	63690757	63776469	239	F	C01SLm0018B20.7	1	85713	+
S.lycopersicum-chr1	63776470	63826469	240	N	50000	clone	yes	
S.lycopersicum-chr1	63826470	63826569	241	F	C01SLm0130O13.8	1	100	+
S.lycopersicum-chr1	63826570	63932742	242	F	C01HBa0212H22.2	1	106173	+
S.lycopersicum-chr1	63932743	63962441	243	F	C01SLm0130O13.8	106274	135972	+