#Draft Tomato chromosome 1
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr1	1	2600000	1	N	2600000	contig	no	
S.lycopersicum-chr1	2600001	2717663	2	F	C01HBa0032H01.1	1	117663	+
S.lycopersicum-chr1	2717664	2900000	3	N	182337	contig	no	
S.lycopersicum-chr1	2900001	2997174	4	F	C01HBa0003D15.1	1	97174	+
S.lycopersicum-chr1	2997175	3120000	5	N	122826	contig	no	
S.lycopersicum-chr1	3120001	3308412	6	F	C01HBa0216G16.2	1	188412	+
S.lycopersicum-chr1	3308413	3358412	7	N	50000	contig	no	
S.lycopersicum-chr1	3358413	3528570	8	F	C01HBa0256E08.2	1	170158	+
S.lycopersicum-chr1	3528571	3578570	9	N	50000	contig	no	
S.lycopersicum-chr1	3578571	3733009	10	F	C01HBa0252G05.2	1	154439	+
S.lycopersicum-chr1	3733010	3783009	11	N	50000	contig	no	
S.lycopersicum-chr1	3783010	3917111	12	F	C01HBa0163B20.1	1	134102	+
S.lycopersicum-chr1	3917112	3967111	13	N	50000	contig	no	
S.lycopersicum-chr1	3967112	4078404	14	F	C01HBa0033C15.1	1	111293	+
S.lycopersicum-chr1	4078405	4600000	15	N	521596	contig	no	
S.lycopersicum-chr1	4600001	4707798	16	F	C01HBa0155M04.1	1	107798	+
S.lycopersicum-chr1	4707799	5200000	17	N	492202	contig	no	
S.lycopersicum-chr1	5200001	5307778	18	F	C01HBa0329A12.1	1	107778	+
S.lycopersicum-chr1	5307779	8800000	19	N	3492222	contig	no	
S.lycopersicum-chr1	8800001	8922834	20	F	C01HBa0108J06.1	1	122834	+
S.lycopersicum-chr1	8922835	9150000	21	N	227166	contig	no	
S.lycopersicum-chr1	9150001	9276308	22	F	C01HBa0140O23.1	1	126308	+
S.lycopersicum-chr1	9276309	10400000	23	N	1123692	contig	no	
S.lycopersicum-chr1	10400001	10523679	24	F	C01HBa0159C14.1	1	123679	+
S.lycopersicum-chr1	10523680	10900000	25	N	376321	contig	no	
S.lycopersicum-chr1	10900001	11037173	26	F	C01HBa0051C14.1	1	137173	+
S.lycopersicum-chr1	11037174	11570000	27	N	532827	contig	no	
S.lycopersicum-chr1	11570001	11710884	28	F	C01HBa0005L21.3	1	140884	+
S.lycopersicum-chr1	11710885	11760884	29	N	50000	contig	no	
S.lycopersicum-chr1	11760885	11915855	30	F	C01HBa0010F03.2	1	154971	+
S.lycopersicum-chr1	11915856	11965855	31	N	50000	contig	no	
S.lycopersicum-chr1	11965856	12120678	32	F	C01HBa0057A01.2	1	154823	+
S.lycopersicum-chr1	12120679	12178097	33	F	C01HBa0131O24.1	42346	99764	-
S.lycopersicum-chr1	12178098	12400000	34	N	221903	contig	no	
S.lycopersicum-chr1	12400001	12522551	35	F	C01HBa0111D21.1	1	122551	+
S.lycopersicum-chr1	12522552	12600000	36	N	77449	contig	no	
S.lycopersicum-chr1	12600001	12748085	37	F	C01HBa0043D23.2	1	148085	+
S.lycopersicum-chr1	12748086	12930000	38	N	181915	contig	no	
S.lycopersicum-chr1	12930001	13034211	39	F	C01HBa0024O06.1	1	104211	+
S.lycopersicum-chr1	13034212	13650000	40	N	615789	contig	no	
S.lycopersicum-chr1	13650001	13775207	41	F	C01HBa0037D10.2	1	125207	+
S.lycopersicum-chr1	13775208	14300000	42	N	524793	contig	no	
S.lycopersicum-chr1	14300001	14454120	43	F	C01HBa0071F18.1	1	154120	+
S.lycopersicum-chr1	14454121	14504120	44	N	50000	clone	yes	
S.lycopersicum-chr1	14504121	14625443	45	F	C01HBa0079N04.1	1	121323	+
S.lycopersicum-chr1	14625444	14800000	46	N	174557	contig	no	
S.lycopersicum-chr1	14800001	14925202	47	F	C01HBa0092H13.2	1	125202	+
S.lycopersicum-chr1	14925203	15000000	48	N	74798	contig	no	
S.lycopersicum-chr1	15000001	15134187	49	F	C01HBa0008L19.1	1	134187	+
S.lycopersicum-chr1	15134188	16500000	50	N	1365813	contig	no	
S.lycopersicum-chr1	16500001	16611737	51	F	C01HBa0088L02.2	1	111737	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr1	16611738	60000000	52	N	43388263	contig	no	
S.lycopersicum-chr1	60000001	60133957	53	F	C01SLm0026F20.1	1	133957	+