#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181559	2	F	C02HBa0007F24.2	1	131559	+
S.lycopersicum-chr2	181560	231559	3	N	50000	contig	no	
S.lycopersicum-chr2	231560	393756	4	F	C02HBa0323C04.1	1	162197	+
S.lycopersicum-chr2	393757	9750000	5	N	9356244	contig	no	
S.lycopersicum-chr2	9750001	9883012	6	F	C02HBa0303I24.1	1	133012	+
S.lycopersicum-chr2	9883013	12000000	7	N	2116988	contig	no	
S.lycopersicum-chr2	12000001	12126228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	12126229	13500000	9	N	1373772	contig	no	
S.lycopersicum-chr2	13500001	13644112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	13644113	13694112	11	N	50000	contig	no	
S.lycopersicum-chr2	13694113	13819263	12	F	C02HBa0025N15.1	1	125151	+
S.lycopersicum-chr2	13819264	15750000	13	N	1930737	contig	no	
S.lycopersicum-chr2	15750001	15864508	14	F	C02HBa0280E02.1	1	114508	+
S.lycopersicum-chr2	15864509	18750000	15	N	2885492	contig	no	
S.lycopersicum-chr2	18750001	18884560	16	F	C02HBa0209K17.1	1	134560	+
S.lycopersicum-chr2	18884561	24750000	17	N	5865440	contig	no	
S.lycopersicum-chr2	24750001	24867193	18	F	C02HBa0025A22.1	1	117193	+
S.lycopersicum-chr2	24867194	27000000	19	N	2132807	contig	no	
S.lycopersicum-chr2	27000001	27117515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	27117516	27167515	21	N	50000	clone	yes	
S.lycopersicum-chr2	27167516	27303839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	27303840	27562500	23	N	258661	contig	no	
S.lycopersicum-chr2	27562501	27680831	24	F	C02HBa0155C04.2	1	118331	+
S.lycopersicum-chr2	27680832	27712313	25	F	C02HBa0168N10.1	75871	107352	-
S.lycopersicum-chr2	27712314	27773297	26	F	C02SLm0045L06.2	10412	71395	+
S.lycopersicum-chr2	27773298	34500000	27	N	6726703	contig	no	
S.lycopersicum-chr2	34500001	34620940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	34620941	34732832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	34732833	52500000	30	N	17767168	contig	no	
S.lycopersicum-chr2	52500001	52638270	31	F	C02HBa0329G05.2	1	138270	+
S.lycopersicum-chr2	52638271	52688270	32	N	50000	clone	yes	
S.lycopersicum-chr2	52688271	52768589	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	52768590	53250000	34	N	481411	contig	no	
S.lycopersicum-chr2	53250001	53296886	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	53296887	54000000	36	N	703114	contig	no	
S.lycopersicum-chr2	54000001	54242628	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	54242629	54375000	38	N	132372	contig	no	
S.lycopersicum-chr2	54375001	54503334	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	54503335	54750000	40	N	246666	contig	no	
S.lycopersicum-chr2	54750001	54929870	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	54929871	55875000	42	N	945130	contig	no	
S.lycopersicum-chr2	55875001	56030902	43	F	C02HBa0320D04.1	1	155902	+
S.lycopersicum-chr2	56030903	57000000	44	N	969098	contig	no	
S.lycopersicum-chr2	57000001	57139933	45	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	57139934	58125000	46	N	985067	contig	no	
S.lycopersicum-chr2	58125001	58261239	47	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	58261240	61500000	48	N	3238761	contig	no	
S.lycopersicum-chr2	61500001	61650439	49	F	C02HBa0060J03.1	1	150439	+
S.lycopersicum-chr2	61650440	61700439	50	N	50000	clone	yes	
S.lycopersicum-chr2	61700440	61830036	51	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	61830037	62625000	52	N	794964	contig	no	
S.lycopersicum-chr2	62625001	62737088	53	F	C02HBa0009K06.1	1	112088	+
S.lycopersicum-chr2	62737089	66000000	54	N	3262912	contig	no	
S.lycopersicum-chr2	66000001	66045596	55	F	C02HBa0213A01.1	1	45596	+
S.lycopersicum-chr2	66045597	66095596	56	N	50000	contig	no	
S.lycopersicum-chr2	66095597	66230888	57	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	66230889	66280888	58	N	50000	clone	yes	
S.lycopersicum-chr2	66280889	66386196	59	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	66386197	66389985	60	F	C02SLm0097L01.1	33784	37572	-
S.lycopersicum-chr2	66389986	66439985	61	N	50000	clone	yes	
S.lycopersicum-chr2	66439986	66542081	62	F	C02HBa0030A21.1	1	102096	-
S.lycopersicum-chr2	66542082	66599516	63	F	C02HBa0074A14.1	53002	110436	+
S.lycopersicum-chr2	66599517	66691409	64	F	C02HBa0215M12.1	67874	159766	+
S.lycopersicum-chr2	66691410	66750000	65	N	58591	contig	no	
S.lycopersicum-chr2	66750001	66863729	66	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	66863730	66975000	67	N	111271	contig	no	
S.lycopersicum-chr2	66975001	67123203	68	F	C02HBa0180C05.1	1	148203	-
S.lycopersicum-chr2	67123204	67226116	69	F	C02HBa0134G09.1	20927	123839	+
S.lycopersicum-chr2	67226117	70500000	70	N	3273884	contig	no	
S.lycopersicum-chr2	70500001	70635831	71	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	70635832	70685831	72	N	50000	contig	no	
S.lycopersicum-chr2	70685832	70765336	73	F	C02SLm0014P22.1	1	79505	+
S.lycopersicum-chr2	70765337	70815336	74	N	50000	clone	yes	
S.lycopersicum-chr2	70815337	70912495	75	F	C02SLm0065M14.1	1	97159	-
S.lycopersicum-chr2	70912496	71007531	76	F	C02HBa0016A12.1	19554	114589	+
S.lycopersicum-chr2	71007532	83250000	77	N	12242469	contig	no	
S.lycopersicum-chr2	83250001	83385577	78	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	83385578	84000000	79	N	614423	contig	no	
S.lycopersicum-chr2	84000001	84135113	80	F	C02HBa0108N03.2	1	135113	+
S.lycopersicum-chr2	84135114	84185113	81	N	50000	clone	yes	
S.lycopersicum-chr2	84185114	84292614	82	F	C02HBa0111M10.1	1	107501	+
S.lycopersicum-chr2	84292615	84402641	83	F	C02SLm0066K03.2	13050	123076	-
S.lycopersicum-chr2	84402642	90000000	84	N	5597359	contig	no	
S.lycopersicum-chr2	90000001	90131021	85	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	90131022	104625000	86	N	14493979	contig	no	
S.lycopersicum-chr2	104625001	104757217	87	F	C02HBa0064B17.2	1	132217	+
S.lycopersicum-chr2	104757218	104839799	88	F	C02SLm0055O24.1	12207	94788	-
S.lycopersicum-chr2	104839800	105750000	89	N	910201	contig	no	
S.lycopersicum-chr2	105750001	105872661	90	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	105872662	105982669	91	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	105982670	106500000	92	N	517331	contig	no	
S.lycopersicum-chr2	106500001	106613302	93	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	106613303	106663302	94	N	50000	clone	yes	
S.lycopersicum-chr2	106663303	106813780	95	F	C02HBa0177F12.2	1	150478	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	106813781	750000000000	96	N	749893186220	contig	no	
S.lycopersicum-chr2	750000000001	750000075133	97	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	750000075134	750000125133	98	N	50000	contig	no	
S.lycopersicum-chr2	750000125134	750000164000	99	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	750000164001	750000214000	100	N	50000	contig	no	
S.lycopersicum-chr2	750000214001	750000329597	101	F	C02HBa0155D20.1	1	115597	+
S.lycopersicum-chr2	750000329598	750000379597	102	N	50000	contig	no	
S.lycopersicum-chr2	750000379598	750000504121	103	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	750000504122	750000554121	104	N	50000	contig	no	
S.lycopersicum-chr2	750000554122	750000663388	105	F	C02HBa0228I09.1	1	109267	+
S.lycopersicum-chr2	750000663389	750000713388	106	N	50000	contig	no	
S.lycopersicum-chr2	750000713389	750000828436	107	F	C02SLm0049G16.1	1	115048	+
S.lycopersicum-chr2	750000828437	750000878436	108	N	50000	contig	no	
S.lycopersicum-chr2	750000878437	750001024368	109	F	C02HBa0090O01.1	1	145932	+
S.lycopersicum-chr2	750001024369	750001074368	110	N	50000	contig	no	
S.lycopersicum-chr2	750001074369	750001225530	111	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	750001225531	750001275530	112	N	50000	contig	no	
S.lycopersicum-chr2	750001275531	750001359561	113	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	750001359562	750001409561	114	N	50000	contig	no	
S.lycopersicum-chr2	750001409562	750001500912	115	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	750001500913	750001550912	116	N	50000	contig	no	
S.lycopersicum-chr2	750001550913	750001634251	117	F	C02SLm0065K08.1	1	83339	+
S.lycopersicum-chr2	750001634252	750001684251	118	N	50000	contig	no	
S.lycopersicum-chr2	750001684252	750001801980	119	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	750001801981	750001851980	120	N	50000	contig	no	
S.lycopersicum-chr2	750001851981	750001992248	121	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	750001992249	750002042248	122	N	50000	contig	no	
S.lycopersicum-chr2	750002042249	750002155040	123	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	750002155041	750002205040	124	N	50000	contig	no	
S.lycopersicum-chr2	750002205041	750002333803	125	F	C02SLm0020N19.1	1	128763	+
S.lycopersicum-chr2	750002333804	750002383803	126	N	50000	contig	no	
S.lycopersicum-chr2	750002383804	750002508539	127	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	750002508540	750002558539	128	N	50000	contig	no	
S.lycopersicum-chr2	750002558540	750002666284	129	F	C02SLe0033D19.1	1	107745	+
S.lycopersicum-chr2	750002666285	750002716284	130	N	50000	contig	no	
S.lycopersicum-chr2	750002716285	750002835785	131	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	750002835786	750002885785	132	N	50000	contig	no	
S.lycopersicum-chr2	750002885786	750002994580	133	F	C02SLm0042B19.1	1	108795	+
S.lycopersicum-chr2	750002994581	750003044580	134	N	50000	contig	no	
S.lycopersicum-chr2	750003044581	750003154791	135	F	C02SLe0042D07.1	1	110211	+
S.lycopersicum-chr2	750003154792	750003204791	136	N	50000	contig	no	
S.lycopersicum-chr2	750003204792	750003277060	137	F	C02HBa0257H21.1	1	72269	+
S.lycopersicum-chr2	750003277061	750003327060	138	N	50000	contig	no	
S.lycopersicum-chr2	750003327061	750003442343	139	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	750003442344	750003492343	140	N	50000	contig	no	
S.lycopersicum-chr2	750003492344	750003615539	141	F	C02HBa0162I09.1	1	123196	+
S.lycopersicum-chr2	750003615540	750003665539	142	N	50000	contig	no	
S.lycopersicum-chr2	750003665540	750003780299	143	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	750003780300	750003830299	144	N	50000	contig	no	
S.lycopersicum-chr2	750003830300	750003928791	145	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	750003928792	750004084006	146	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	750004084007	750004134006	147	N	50000	contig	no	
S.lycopersicum-chr2	750004134007	750004232064	148	F	C02SLm0064E19.1	1	98058	-
S.lycopersicum-chr2	750004232065	750004346751	149	F	C02HBa0160F05.1	8001	122687	+
S.lycopersicum-chr2	750004346752	750004396751	150	N	50000	contig	no	
S.lycopersicum-chr2	750004396752	750004535531	151	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	750004535532	750004567937	152	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	750004567938	750004617937	153	N	50000	clone	yes	
S.lycopersicum-chr2	750004617938	750004712447	154	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	750004712448	750004822520	155	F	C02HBa0059M17.2	4964	115036	+