#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119251	12	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2500000	15	N	216253	contig	no	
S.lycopersicum-chr2	2500001	2634549	16	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2634550	3300000	17	N	665451	contig	no	
S.lycopersicum-chr2	3300001	3417181	18	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	19	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	24	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	25	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4229483	26	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4229484	4600000	27	N	370517	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	31	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	34	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	36	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	38	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	40	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	42	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8272187	43	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8272188	8322187	44	N	50000	contig	no	
S.lycopersicum-chr2	8322188	8403586	45	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8403587	8453586	46	N	50000	contig	no	
S.lycopersicum-chr2	8453587	8593519	47	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8593520	8643519	48	N	50000	contig	no	
S.lycopersicum-chr2	8643520	8779314	49	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8779315	8858663	50	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8858664	8908663	51	N	50000	contig	no	
S.lycopersicum-chr2	8908664	9044902	52	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9044903	9094902	53	N	50000	contig	no	
S.lycopersicum-chr2	9094903	9245328	54	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9245329	9295328	55	N	50000	clone	yes	
S.lycopersicum-chr2	9295329	9424925	56	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9424926	9474925	57	N	50000	contig	no	
S.lycopersicum-chr2	9474926	9586999	58	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9587000	9636999	59	N	50000	contig	no	
S.lycopersicum-chr2	9637000	9682583	60	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9682584	9732583	61	N	50000	contig	no	
S.lycopersicum-chr2	9732584	9867875	62	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9867876	9917875	63	N	50000	clone	yes	
S.lycopersicum-chr2	9917876	9955447	64	F	C02SLm0097L01.1	1	37572	+
S.lycopersicum-chr2	9955448	10005447	65	N	50000	clone	yes	
S.lycopersicum-chr2	10005448	10110755	66	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10110756	10202124	67	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10202125	10252124	68	N	50000	clone	yes	
S.lycopersicum-chr2	10252125	10353896	69	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10353897	10411583	70	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10411584	10503547	71	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10503548	10553547	72	N	50000	contig	no	
S.lycopersicum-chr2	10553548	10667276	73	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10667277	10717276	74	N	50000	contig	no	
S.lycopersicum-chr2	10717277	10829320	75	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10829321	10898570	76	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10898571	11025847	77	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11025848	11075847	78	N	50000	contig	no	
S.lycopersicum-chr2	11075848	11278865	79	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11278866	11328865	80	N	50000	clone	yes	
S.lycopersicum-chr2	11328866	11464696	81	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11464697	11514696	82	N	50000	clone	yes	
S.lycopersicum-chr2	11514697	11646472	83	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	11646473	11712585	84	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	11712586	11762585	85	N	50000	clone	yes	
S.lycopersicum-chr2	11762586	11859736	86	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	11859737	11954770	87	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	11954771	12040388	88	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12040389	12116912	89	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12116913	12166912	90	N	50000	contig	no	
S.lycopersicum-chr2	12166913	12254575	91	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12254576	12304575	92	N	50000	contig	no	
S.lycopersicum-chr2	12304576	12440152	93	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	12440153	12490152	94	N	50000	contig	no	
S.lycopersicum-chr2	12490153	12597641	95	F	C02HBa0111M10.2	1	107489	+
S.lycopersicum-chr2	12597642	12707674	96	F	C02SLm0066K03.2	13044	123076	-
S.lycopersicum-chr2	12707675	12822564	97	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	12822565	12872564	98	N	50000	contig	no	
S.lycopersicum-chr2	12872565	12929888	99	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	12929889	12979888	100	N	50000	contig	no	
S.lycopersicum-chr2	12979889	13110909	101	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13110910	13950000	102	N	839091	contig	no	
S.lycopersicum-chr2	13950001	14082204	103	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	104	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	105	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	106	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	107	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	108	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	109	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	110	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	111	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	112	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60087832	113	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	60087833	60137832	114	N	50000	contig	no	
S.lycopersicum-chr2	60137833	60248031	115	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	60248032	60298031	116	N	50000	contig	no	
S.lycopersicum-chr2	60298032	60408090	117	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	60408091	60458090	118	N	50000	contig	no	
S.lycopersicum-chr2	60458091	60565823	119	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	60565824	60615823	120	N	50000	contig	no	
S.lycopersicum-chr2	60615824	60690956	121	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	60690957	60740956	122	N	50000	contig	no	
S.lycopersicum-chr2	60740957	60864140	123	F	C02HBa0162I09.2	1	123184	+
S.lycopersicum-chr2	60864141	60914140	124	N	50000	contig	no	
S.lycopersicum-chr2	60914141	61056445	125	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	61056446	61106445	126	N	50000	contig	no	
S.lycopersicum-chr2	61106446	61204495	127	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	61204496	61254495	128	N	50000	contig	no	
S.lycopersicum-chr2	61254496	61367287	129	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	61367288	61417287	130	N	50000	contig	no	
S.lycopersicum-chr2	61417288	61546041	131	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	61546042	61596041	132	N	50000	contig	no	
S.lycopersicum-chr2	61596042	61747203	133	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	61747204	61797203	134	N	50000	contig	no	
S.lycopersicum-chr2	61797204	61836070	135	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	61836071	61886070	136	N	50000	contig	no	
S.lycopersicum-chr2	61886071	62026338	137	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	62026339	62076338	138	N	50000	contig	no	
S.lycopersicum-chr2	62076339	62147733	139	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	62147734	62197733	140	N	50000	contig	no	
S.lycopersicum-chr2	62197734	62269990	141	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	62269991	62319990	142	N	50000	contig	no	
S.lycopersicum-chr2	62319991	62403321	143	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	62403322	62453321	144	N	50000	contig	no	
S.lycopersicum-chr2	62453322	62571050	145	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	62571051	62621050	146	N	50000	contig	no	
S.lycopersicum-chr2	62621051	62736635	147	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	62736636	62786635	148	N	50000	contig	no	
S.lycopersicum-chr2	62786636	62877314	149	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	62877315	62927314	150	N	50000	contig	no	
S.lycopersicum-chr2	62927315	63046815	151	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	63046816	63096815	152	N	50000	contig	no	
S.lycopersicum-chr2	63096816	63212098	153	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63212099	63262098	154	N	50000	contig	no	
S.lycopersicum-chr2	63262099	63386622	155	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	63386623	63436622	156	N	50000	contig	no	
S.lycopersicum-chr2	63436623	63582542	157	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	63582543	63632542	158	N	50000	contig	no	
S.lycopersicum-chr2	63632543	63741329	159	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	63741330	63791329	160	N	50000	contig	no	
S.lycopersicum-chr2	63791330	63858734	161	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	63858735	63908734	162	N	50000	contig	no	
S.lycopersicum-chr2	63908735	64033470	163	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	64033471	64083470	164	N	50000	contig	no	
S.lycopersicum-chr2	64083471	64167501	165	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	64167502	64217501	166	N	50000	contig	no	
S.lycopersicum-chr2	64217502	64309080	167	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	64309081	64359080	168	N	50000	contig	no	
S.lycopersicum-chr2	64359081	64470596	169	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	64470597	64520596	170	N	50000	contig	no	
S.lycopersicum-chr2	64520597	64643271	171	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	64643272	64693271	172	N	50000	contig	no	
S.lycopersicum-chr2	64693272	64808031	173	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	64808032	64858031	174	N	50000	contig	no	
S.lycopersicum-chr2	64858032	64949382	175	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	64949383	64999382	176	N	50000	contig	no	
S.lycopersicum-chr2	64999383	65061547	177	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	65061548	65111547	178	N	50000	contig	no	
S.lycopersicum-chr2	65111548	65145166	179	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	65145167	65195166	180	N	50000	contig	no	
S.lycopersicum-chr2	65195167	65293658	181	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	65293659	65448873	182	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	65448874	65498873	183	N	50000	contig	no	
S.lycopersicum-chr2	65498874	65637653	184	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65637654	65670059	185	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65670060	65720059	186	N	50000	clone	yes	
S.lycopersicum-chr2	65720060	65814569	187	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	65814570	65924642	188	F	C02HBa0059M17.2	4964	115036	+