#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119251	12	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2500000	15	N	216253	contig	no	
S.lycopersicum-chr2	2500001	2634549	16	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2634550	3300000	17	N	665451	contig	no	
S.lycopersicum-chr2	3300001	3417181	18	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	19	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	24	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	25	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4229483	26	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4229484	4600000	27	N	370517	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	31	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	34	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	36	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	38	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	40	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	42	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8272187	43	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8272188	8322187	44	N	50000	contig	no	
S.lycopersicum-chr2	8322188	8403586	45	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8403587	8466221	46	F	C02SLm0073G04.1	26451	89085	-
S.lycopersicum-chr2	8466222	8516221	47	N	50000	contig	no	
S.lycopersicum-chr2	8516222	8656154	48	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8656155	8706154	49	N	50000	contig	no	
S.lycopersicum-chr2	8706155	8841949	50	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8841950	8921298	51	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8921299	8971298	52	N	50000	contig	no	
S.lycopersicum-chr2	8971299	9107537	53	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9107538	9157537	54	N	50000	contig	no	
S.lycopersicum-chr2	9157538	9307963	55	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9307964	9357963	56	N	50000	clone	yes	
S.lycopersicum-chr2	9357964	9487560	57	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9487561	9537560	58	N	50000	contig	no	
S.lycopersicum-chr2	9537561	9649634	59	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9649635	9699634	60	N	50000	contig	no	
S.lycopersicum-chr2	9699635	9745218	61	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9745219	9795218	62	N	50000	contig	no	
S.lycopersicum-chr2	9795219	9930510	63	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9930511	9980510	64	N	50000	clone	yes	
S.lycopersicum-chr2	9980511	10085818	65	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10085819	10177187	66	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10177188	10227187	67	N	50000	clone	yes	
S.lycopersicum-chr2	10227188	10264751	68	F	C02SLm0097L01.2	1	37564	+
S.lycopersicum-chr2	10264752	10434542	69	F	C02SLm0128E12.1	10114	179904	-
S.lycopersicum-chr2	10434543	10484542	70	N	50000	clone	yes	
S.lycopersicum-chr2	10484543	10586314	71	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10586315	10644001	72	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10644002	10735965	73	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10735966	10785965	74	N	50000	contig	no	
S.lycopersicum-chr2	10785966	10899694	75	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10899695	10949694	76	N	50000	contig	no	
S.lycopersicum-chr2	10949695	11061738	77	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	11061739	11130988	78	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	11130989	11258265	79	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11258266	11308265	80	N	50000	contig	no	
S.lycopersicum-chr2	11308266	11511283	81	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11511284	11561283	82	N	50000	clone	yes	
S.lycopersicum-chr2	11561284	11697114	83	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11697115	11747114	84	N	50000	clone	yes	
S.lycopersicum-chr2	11747115	11878890	85	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	11878891	11945003	86	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	11945004	11995003	87	N	50000	clone	yes	
S.lycopersicum-chr2	11995004	12092154	88	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	12092155	12187188	89	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	12187189	12272806	90	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12272807	12349330	91	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12349331	12399330	92	N	50000	contig	no	
S.lycopersicum-chr2	12399331	12486993	93	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12486994	12536993	94	N	50000	contig	no	
S.lycopersicum-chr2	12536994	12672570	95	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	12672571	12722570	96	N	50000	contig	no	
S.lycopersicum-chr2	12722571	12830059	97	F	C02HBa0111M10.2	1	107489	+
S.lycopersicum-chr2	12830060	12940092	98	F	C02SLm0066K03.2	13044	123076	-
S.lycopersicum-chr2	12940093	13054982	99	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13054983	13104982	100	N	50000	contig	no	
S.lycopersicum-chr2	13104983	13162306	101	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13162307	13212306	102	N	50000	contig	no	
S.lycopersicum-chr2	13212307	13343327	103	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13343328	13950000	104	N	606673	contig	no	
S.lycopersicum-chr2	13950001	14082204	105	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	106	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	107	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	108	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	109	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	110	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	111	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	112	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	113	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	114	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60071395	115	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	60071396	60121395	116	N	50000	contig	no	
S.lycopersicum-chr2	60121396	60231454	117	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	60231455	60281454	118	N	50000	contig	no	
S.lycopersicum-chr2	60281455	60348859	119	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	60348860	60398859	120	N	50000	contig	no	
S.lycopersicum-chr2	60398860	60513619	121	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	60513620	60563619	122	N	50000	contig	no	
S.lycopersicum-chr2	60563620	60654970	123	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	60654971	60704970	124	N	50000	contig	no	
S.lycopersicum-chr2	60704971	60795649	125	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	60795650	60845649	126	N	50000	contig	no	
S.lycopersicum-chr2	60845650	60955848	127	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	60955849	61005848	128	N	50000	contig	no	
S.lycopersicum-chr2	61005849	61128523	129	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	61128524	61178523	130	N	50000	contig	no	
S.lycopersicum-chr2	61178524	61240688	131	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	61240689	61290688	132	N	50000	contig	no	
S.lycopersicum-chr2	61290689	61378520	133	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	61378521	61428520	134	N	50000	contig	no	
S.lycopersicum-chr2	61428521	61541312	135	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	61541313	61591312	136	N	50000	contig	no	
S.lycopersicum-chr2	61591313	61742474	137	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	61742475	61792474	138	N	50000	contig	no	
S.lycopersicum-chr2	61792475	61901261	139	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	61901262	61951261	140	N	50000	contig	no	
S.lycopersicum-chr2	61951262	62049311	141	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	62049312	62099311	142	N	50000	contig	no	
S.lycopersicum-chr2	62099312	62222495	143	F	C02HBa0162I09.2	1	123184	+
S.lycopersicum-chr2	62222496	62272495	144	N	50000	contig	no	
S.lycopersicum-chr2	62272496	62390224	145	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	62390225	62440224	146	N	50000	contig	no	
S.lycopersicum-chr2	62440225	62555809	147	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	62555810	62605809	148	N	50000	contig	no	
S.lycopersicum-chr2	62605810	62697388	149	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	62697389	62747388	150	N	50000	contig	no	
S.lycopersicum-chr2	62747389	62876142	151	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	62876143	62926142	152	N	50000	contig	no	
S.lycopersicum-chr2	62926143	63041425	153	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63041426	63091425	154	N	50000	contig	no	
S.lycopersicum-chr2	63091426	63174756	155	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	63174757	63224756	156	N	50000	contig	no	
S.lycopersicum-chr2	63224757	63263623	157	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	63263624	63313623	158	N	50000	contig	no	
S.lycopersicum-chr2	63313624	63455928	159	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	63455929	63505928	160	N	50000	contig	no	
S.lycopersicum-chr2	63505929	63630409	161	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	63630410	63680409	162	N	50000	contig	no	
S.lycopersicum-chr2	63680410	63826329	163	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	63826330	63876329	164	N	50000	contig	no	
S.lycopersicum-chr2	63876330	63995830	165	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	63995831	64045830	166	N	50000	contig	no	
S.lycopersicum-chr2	64045831	64118087	167	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	64118088	64168087	168	N	50000	contig	no	
S.lycopersicum-chr2	64168088	64201706	169	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	64201707	64251706	170	N	50000	contig	no	
S.lycopersicum-chr2	64251707	64376442	171	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	64376443	64426442	172	N	50000	contig	no	
S.lycopersicum-chr2	64426443	64510473	173	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	64510474	64560473	174	N	50000	contig	no	
S.lycopersicum-chr2	64560474	64671989	175	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	64671990	64721989	176	N	50000	contig	no	
S.lycopersicum-chr2	64721990	64829722	177	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	64829723	64879722	178	N	50000	contig	no	
S.lycopersicum-chr2	64879723	64954855	179	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	64954856	65004855	180	N	50000	contig	no	
S.lycopersicum-chr2	65004856	65145123	181	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	65145124	65195123	182	N	50000	contig	no	
S.lycopersicum-chr2	65195124	65293615	183	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	65293616	65448830	184	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	65448831	65498830	185	N	50000	contig	no	
S.lycopersicum-chr2	65498831	65637610	186	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65637611	65670016	187	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65670017	65720016	188	N	50000	clone	yes	
S.lycopersicum-chr2	65720017	65814526	189	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	65814527	65924599	190	F	C02HBa0059M17.2	4964	115036	+