#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119251	12	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2333747	15	N	50000	contig	no	
S.lycopersicum-chr2	2333748	2455506	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455507	2505506	17	N	50000	contig	no	
S.lycopersicum-chr2	2505507	2640055	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640056	3300000	19	N	659945	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	22	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	25	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	27	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4229483	28	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4229484	4600000	29	N	370517	contig	no	
S.lycopersicum-chr2	4600001	4720940	30	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	31	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	32	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	33	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	34	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	35	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	36	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	37	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	38	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	39	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	40	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	41	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	42	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	43	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	44	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8262525	45	F	C02HBa0175O20.1	1	146228	+
S.lycopersicum-chr2	8262526	8407860	46	F	C02HBa0320D04.2	10556	155890	-
S.lycopersicum-chr2	8407861	8457860	47	N	50000	contig	no	
S.lycopersicum-chr2	8457861	8539259	48	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8539260	8601894	49	F	C02SLm0073G04.1	26451	89085	-
S.lycopersicum-chr2	8601895	8651894	50	N	50000	contig	no	
S.lycopersicum-chr2	8651895	8791827	51	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8791828	8841827	52	N	50000	contig	no	
S.lycopersicum-chr2	8841828	8977622	53	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8977623	9056971	54	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	9056972	9106971	55	N	50000	contig	no	
S.lycopersicum-chr2	9106972	9243210	56	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9243211	9293210	57	N	50000	contig	no	
S.lycopersicum-chr2	9293211	9443636	58	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9443637	9493636	59	N	50000	clone	yes	
S.lycopersicum-chr2	9493637	9623233	60	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9623234	9673233	61	N	50000	contig	no	
S.lycopersicum-chr2	9673234	9785307	62	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9785308	9835307	63	N	50000	contig	no	
S.lycopersicum-chr2	9835308	9880891	64	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9880892	9930891	65	N	50000	contig	no	
S.lycopersicum-chr2	9930892	10066183	66	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	10066184	10116183	67	N	50000	clone	yes	
S.lycopersicum-chr2	10116184	10221491	68	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10221492	10312860	69	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10312861	10362860	70	N	50000	clone	yes	
S.lycopersicum-chr2	10362861	10400424	71	F	C02SLm0097L01.2	1	37564	+
S.lycopersicum-chr2	10400425	10570215	72	F	C02SLm0128E12.1	10114	179904	-
S.lycopersicum-chr2	10570216	10620215	73	N	50000	clone	yes	
S.lycopersicum-chr2	10620216	10721987	74	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10721988	10779674	75	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10779675	10871638	76	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10871639	10921638	77	N	50000	contig	no	
S.lycopersicum-chr2	10921639	11035367	78	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	11035368	11085367	79	N	50000	contig	no	
S.lycopersicum-chr2	11085368	11197411	80	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	11197412	11266661	81	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	11266662	11393938	82	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11393939	11443938	83	N	50000	contig	no	
S.lycopersicum-chr2	11443939	11646956	84	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11646957	11696956	85	N	50000	clone	yes	
S.lycopersicum-chr2	11696957	11832787	86	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11832788	11882787	87	N	50000	clone	yes	
S.lycopersicum-chr2	11882788	12014563	88	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	12014564	12080676	89	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	12080677	12130676	90	N	50000	clone	yes	
S.lycopersicum-chr2	12130677	12227827	91	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	12227828	12322861	92	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	12322862	12408479	93	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12408480	12485003	94	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12485004	12535003	95	N	50000	contig	no	
S.lycopersicum-chr2	12535004	12622666	96	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12622667	12672666	97	N	50000	clone	yes	
S.lycopersicum-chr2	12672667	12815468	98	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12815469	12865468	99	N	50000	contig	no	
S.lycopersicum-chr2	12865469	13001045	100	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	13001046	13051045	101	N	50000	contig	no	
S.lycopersicum-chr2	13051046	13158778	102	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	13158779	13212255	103	F	C02HBa0111M10.2	54012	107488	+
S.lycopersicum-chr2	13212256	13274064	104	F	C02HBa0008G02.1	85198	147006	-
S.lycopersicum-chr2	13274065	13322288	105	F	C02SLm0066K03.2	74853	123076	-
S.lycopersicum-chr2	13322289	13437178	106	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13437179	13487178	107	N	50000	contig	no	
S.lycopersicum-chr2	13487179	13544502	108	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13544503	13594502	109	N	50000	contig	no	
S.lycopersicum-chr2	13594503	13725523	110	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13725524	13950000	111	N	224477	contig	no	
S.lycopersicum-chr2	13950001	14082204	112	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	113	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	114	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	115	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	116	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	117	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	118	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	119	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	120	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	121	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60108787	122	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	60108788	60158787	123	N	50000	contig	no	
S.lycopersicum-chr2	60158788	60250138	124	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	60250139	60300138	125	N	50000	contig	no	
S.lycopersicum-chr2	60300139	60339005	126	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	60339006	60389005	127	N	50000	contig	no	
S.lycopersicum-chr2	60389006	60479684	128	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	60479685	60529684	129	N	50000	contig	no	
S.lycopersicum-chr2	60529685	60652359	130	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	60652360	60702359	131	N	50000	contig	no	
S.lycopersicum-chr2	60702360	60777492	132	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	60777493	60827492	133	N	50000	contig	no	
S.lycopersicum-chr2	60827493	60940284	134	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	60940285	60990284	135	N	50000	contig	no	
S.lycopersicum-chr2	60990285	61115020	136	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61115021	61165020	137	N	50000	contig	no	
S.lycopersicum-chr2	61165021	61249051	138	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	61249052	61299051	139	N	50000	contig	no	
S.lycopersicum-chr2	61299052	61413811	140	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	61413812	61463811	141	N	50000	contig	no	
S.lycopersicum-chr2	61463812	61535206	142	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	61535207	61585206	143	N	50000	contig	no	
S.lycopersicum-chr2	61585207	61696722	144	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	61696723	61746722	145	N	50000	contig	no	
S.lycopersicum-chr2	61746723	61889027	146	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	61889028	61939027	147	N	50000	contig	no	
S.lycopersicum-chr2	61939028	62063508	148	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	62063509	62113508	149	N	50000	contig	no	
S.lycopersicum-chr2	62113509	62223567	150	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	62223568	62273567	151	N	50000	contig	no	
S.lycopersicum-chr2	62273568	62393068	152	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	62393069	62443068	153	N	50000	contig	no	
S.lycopersicum-chr2	62443069	62530900	154	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	62530901	62580900	155	N	50000	contig	no	
S.lycopersicum-chr2	62580901	62664231	156	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	62664232	62714231	157	N	50000	contig	no	
S.lycopersicum-chr2	62714232	62837415	158	F	C02HBa0162I09.2	1	123184	+
S.lycopersicum-chr2	62837416	62887415	159	N	50000	contig	no	
S.lycopersicum-chr2	62887416	62954820	160	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	62954821	63004820	161	N	50000	contig	no	
S.lycopersicum-chr2	63004821	63102870	162	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	63102871	63152870	163	N	50000	contig	no	
S.lycopersicum-chr2	63152871	63293138	164	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	63293139	63343138	165	N	50000	contig	no	
S.lycopersicum-chr2	63343139	63432932	166	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	63432933	63482932	167	N	50000	contig	no	
S.lycopersicum-chr2	63482933	63555189	168	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	63555190	63605189	169	N	50000	contig	no	
S.lycopersicum-chr2	63605190	63733943	170	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	63733944	63783943	171	N	50000	contig	no	
S.lycopersicum-chr2	63783944	63817562	172	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	63817563	63867562	173	N	50000	contig	no	
S.lycopersicum-chr2	63867563	63929727	174	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	63929728	63979727	175	N	50000	contig	no	
S.lycopersicum-chr2	63979728	64095010	176	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	64095011	64145010	177	N	50000	contig	no	
S.lycopersicum-chr2	64145011	64290930	178	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	64290931	64340930	179	N	50000	contig	no	
S.lycopersicum-chr2	64340931	64432509	180	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	64432510	64482509	181	N	50000	contig	no	
S.lycopersicum-chr2	64482510	64592708	182	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	64592709	64642708	183	N	50000	contig	no	
S.lycopersicum-chr2	64642709	64760437	184	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	64760438	64810437	185	N	50000	contig	no	
S.lycopersicum-chr2	64810438	64961599	186	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	64961600	65011599	187	N	50000	contig	no	
S.lycopersicum-chr2	65011600	65127191	188	F	C02HBa0155D20.2	1	115592	+
S.lycopersicum-chr2	65127192	65218161	189	F	C02SLe0053H21.1	56227	147196	-
S.lycopersicum-chr2	65218162	65268161	190	N	50000	contig	no	
S.lycopersicum-chr2	65268162	65366653	191	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	65366654	65521868	192	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	65521869	65571868	193	N	50000	contig	no	
S.lycopersicum-chr2	65571869	65710648	194	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65710649	65743054	195	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65743055	65793054	196	N	50000	clone	yes	
S.lycopersicum-chr2	65793055	65887564	197	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	65887565	65997637	198	F	C02HBa0059M17.2	4964	115036	+