#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119251	12	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2333747	15	N	50000	contig	no	
S.lycopersicum-chr2	2333748	2455506	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455507	2505506	17	N	50000	contig	no	
S.lycopersicum-chr2	2505507	2640055	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640056	3300000	19	N	659945	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	22	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	25	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	27	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4245335	28	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4245336	4369986	29	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4369987	4419986	30	N	50000	contig	no	
S.lycopersicum-chr2	4419987	4527318	31	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4527319	4600000	32	N	72682	contig	no	
S.lycopersicum-chr2	4600001	4720939	33	F	C02HBa0072A04.1	1	120939	-
S.lycopersicum-chr2	4720940	4832832	34	F	C02HBa0066C13.1	24327	136219	+
S.lycopersicum-chr2	4832833	7000000	35	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	36	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	37	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	38	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	39	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	40	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	41	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	42	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	43	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836422	44	F	C02HBa0323A14.2	1	128329	+
S.lycopersicum-chr2	7836423	7886422	45	N	50000	contig	no	
S.lycopersicum-chr2	7886423	8066292	46	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066293	8116292	47	N	50000	contig	no	
S.lycopersicum-chr2	8116293	8197691	48	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8197692	8211322	49	F	C02SLm0021D12.1	76800	90430	+
S.lycopersicum-chr2	8211323	8260326	50	F	C02SLm0073G04.1	40082	89085	-
S.lycopersicum-chr2	8260327	8310326	51	N	50000	contig	no	
S.lycopersicum-chr2	8310327	8446121	52	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8446122	8525470	53	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8525471	8575470	54	N	50000	clone	yes	
S.lycopersicum-chr2	8575471	8731360	55	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8731361	8843344	56	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	8843345	8867032	57	F	C02HBa0175O20.1	122540	146227	-
S.lycopersicum-chr2	8867033	8944482	58	F	C02HBa0144P17.1	15143	92592	+
S.lycopersicum-chr2	8944483	8994482	59	N	50000	contig	no	
S.lycopersicum-chr2	8994483	9134415	60	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	9134416	9184415	61	N	50000	contig	no	
S.lycopersicum-chr2	9184416	9320654	62	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9320655	9370654	63	N	50000	contig	no	
S.lycopersicum-chr2	9370655	9521080	64	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9521081	9571080	65	N	50000	clone	yes	
S.lycopersicum-chr2	9571081	9700677	66	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9700678	9750677	67	N	50000	contig	no	
S.lycopersicum-chr2	9750678	9862751	68	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9862752	9912751	69	N	50000	contig	no	
S.lycopersicum-chr2	9912752	9958335	70	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9958336	10008335	71	N	50000	contig	no	
S.lycopersicum-chr2	10008336	10143627	72	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	10143628	10193627	73	N	50000	clone	yes	
S.lycopersicum-chr2	10193628	10298935	74	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10298936	10390304	75	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10390305	10440304	76	N	50000	clone	yes	
S.lycopersicum-chr2	10440305	10477868	77	F	C02SLm0097L01.2	1	37564	+
S.lycopersicum-chr2	10477869	10647659	78	F	C02SLm0128E12.1	10114	179904	-
S.lycopersicum-chr2	10647660	10697659	79	N	50000	clone	yes	
S.lycopersicum-chr2	10697660	10799431	80	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10799432	10857116	81	F	C02HBa0074A14.2	52672	110356	+
S.lycopersicum-chr2	10857117	10949082	82	F	C02HBa0215M12.1	67801	159766	+
S.lycopersicum-chr2	10949083	10999082	83	N	50000	contig	no	
S.lycopersicum-chr2	10999083	11112811	84	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	11112812	11162811	85	N	50000	contig	no	
S.lycopersicum-chr2	11162812	11274855	86	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	11274856	11344105	87	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	11344106	11471382	88	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11471383	11521382	89	N	50000	contig	no	
S.lycopersicum-chr2	11521383	11724400	90	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11724401	11774400	91	N	50000	clone	yes	
S.lycopersicum-chr2	11774401	11910231	92	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11910232	11960231	93	N	50000	clone	yes	
S.lycopersicum-chr2	11960232	12092007	94	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	12092008	12158120	95	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	12158121	12208120	96	N	50000	clone	yes	
S.lycopersicum-chr2	12208121	12305271	97	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	12305272	12400305	98	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	12400306	12485923	99	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12485924	12562447	100	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12562448	12612447	101	N	50000	contig	no	
S.lycopersicum-chr2	12612448	12700110	102	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12700111	12750110	103	N	50000	clone	yes	
S.lycopersicum-chr2	12750111	12892912	104	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12892913	12942912	105	N	50000	contig	no	
S.lycopersicum-chr2	12942913	13078489	106	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	13078490	13128489	107	N	50000	contig	no	
S.lycopersicum-chr2	13128490	13236222	108	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	13236223	13289700	109	F	C02HBa0111M10.2	54012	107489	+
S.lycopersicum-chr2	13289701	13351508	110	F	C02HBa0008G02.1	85199	147006	-
S.lycopersicum-chr2	13351509	13399732	111	F	C02SLm0066K03.2	74853	123076	-
S.lycopersicum-chr2	13399733	13514622	112	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13514623	13564622	113	N	50000	contig	no	
S.lycopersicum-chr2	13564623	13621946	114	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13621947	13671946	115	N	50000	contig	no	
S.lycopersicum-chr2	13671947	13802967	116	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13802968	13950000	117	N	147033	contig	no	
S.lycopersicum-chr2	13950001	14082204	118	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	119	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	120	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	121	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	122	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	123	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	124	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	125	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	126	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	127	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60083331	128	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	60083332	60133331	129	N	50000	contig	no	
S.lycopersicum-chr2	60133332	60257763	130	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	60257764	60307763	131	N	50000	contig	no	
S.lycopersicum-chr2	60307764	60436751	132	F	C02SLe0054B08.1	1	128988	+
S.lycopersicum-chr2	60436752	60486751	133	N	50000	contig	no	
S.lycopersicum-chr2	60486752	60578330	134	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	60578331	60628330	135	N	50000	contig	no	
S.lycopersicum-chr2	60628331	60770635	136	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	60770636	60820635	137	N	50000	contig	no	
S.lycopersicum-chr2	60820636	60904666	138	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	60904667	60954666	139	N	50000	contig	no	
S.lycopersicum-chr2	60954667	61042498	140	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	61042499	61092498	141	N	50000	contig	no	
S.lycopersicum-chr2	61092499	61190548	142	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	61190549	61240548	143	N	50000	contig	no	
S.lycopersicum-chr2	61240549	61307953	144	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	61307954	61357953	145	N	50000	contig	no	
S.lycopersicum-chr2	61357954	61507357	146	F	C02HBa0115F06.1	1	149404	+
S.lycopersicum-chr2	61507358	61557357	147	N	50000	contig	no	
S.lycopersicum-chr2	61557358	61619818	148	F	C02HBa0138P10.1	1	62461	+
S.lycopersicum-chr2	61619819	61669818	149	N	50000	contig	no	
S.lycopersicum-chr2	61669819	61784815	150	F	C02SLe0065H17.1	1	114997	+
S.lycopersicum-chr2	61784816	61834815	151	N	50000	contig	no	
S.lycopersicum-chr2	61834816	61959551	152	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61959552	62009551	153	N	50000	contig	no	
S.lycopersicum-chr2	62009552	62080946	154	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	62080947	62130946	155	N	50000	contig	no	
S.lycopersicum-chr2	62130947	62221625	156	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	62221626	62271625	157	N	50000	contig	no	
S.lycopersicum-chr2	62271626	62429937	158	F	C02SLm0132H19.1	1	158312	+
S.lycopersicum-chr2	62429938	62479937	159	N	50000	contig	no	
S.lycopersicum-chr2	62479938	62599438	160	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	62599439	62649438	161	N	50000	contig	no	
S.lycopersicum-chr2	62649439	62724571	162	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	62724572	62774571	163	N	50000	contig	no	
S.lycopersicum-chr2	62774572	62865922	164	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	62865923	62915922	165	N	50000	contig	no	
S.lycopersicum-chr2	62915923	62949541	166	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	62949542	62999541	167	N	50000	contig	no	
S.lycopersicum-chr2	62999542	63114824	168	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63114825	63164824	169	N	50000	contig	no	
S.lycopersicum-chr2	63164825	63276722	170	F	C02HBa0054K23.1	1	111898	+
S.lycopersicum-chr2	63276723	63326722	171	N	50000	contig	no	
S.lycopersicum-chr2	63326723	63455476	172	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	63455477	63505476	173	N	50000	contig	no	
S.lycopersicum-chr2	63505477	63620236	174	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	63620237	63670236	175	N	50000	contig	no	
S.lycopersicum-chr2	63670237	63760030	176	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	63760031	63810030	177	N	50000	contig	no	
S.lycopersicum-chr2	63810031	63932021	178	F	C02HBa0044J01.1	1	121991	+
S.lycopersicum-chr2	63932022	63982021	179	N	50000	contig	no	
S.lycopersicum-chr2	63982022	64092080	180	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	64092081	64142080	181	N	50000	contig	no	
S.lycopersicum-chr2	64142081	64304197	182	F	C02SLm0127N23.1	1	162117	+
S.lycopersicum-chr2	64304198	64354197	183	N	50000	contig	no	
S.lycopersicum-chr2	64354198	64462984	184	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	64462985	64512984	185	N	50000	contig	no	
S.lycopersicum-chr2	64512985	64551851	186	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	64551852	64601851	187	N	50000	contig	no	
S.lycopersicum-chr2	64601852	64712050	188	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	64712051	64762050	189	N	50000	contig	no	
S.lycopersicum-chr2	64762051	64884725	190	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	64884726	64934725	191	N	50000	contig	no	
S.lycopersicum-chr2	64934726	64996890	192	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	64996891	65046890	193	N	50000	contig	no	
S.lycopersicum-chr2	65046891	65192810	194	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	65192811	65242810	195	N	50000	contig	no	
S.lycopersicum-chr2	65242811	65315067	196	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	65315068	65365067	197	N	50000	contig	no	
S.lycopersicum-chr2	65365068	65477859	198	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	65477860	65527859	199	N	50000	contig	no	
S.lycopersicum-chr2	65527860	65679021	200	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	65679022	65729021	201	N	50000	contig	no	
S.lycopersicum-chr2	65729022	65869289	202	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	65869290	65919289	203	N	50000	contig	no	
S.lycopersicum-chr2	65919290	66043770	204	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	66043771	66093770	205	N	50000	contig	no	
S.lycopersicum-chr2	66093771	66205286	206	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	66205287	66255286	207	N	50000	contig	no	
S.lycopersicum-chr2	66255287	66370871	208	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	66370872	66461846	209	F	C02SLe0053H21.1	56220	147194	-
S.lycopersicum-chr2	66461847	66511846	210	N	50000	contig	no	
S.lycopersicum-chr2	66511847	66610338	211	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	66610339	66765553	212	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	66765554	66815553	213	N	50000	contig	no	
S.lycopersicum-chr2	66815554	66939631	214	F	C02HBa0146O16.1	1	124078	-
S.lycopersicum-chr2	66939632	66993651	215	F	C02HBa0030E13.1	56662	110681	+
S.lycopersicum-chr2	66993652	67043651	216	N	50000	contig	no	
S.lycopersicum-chr2	67043652	67161380	217	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	67161381	67211380	218	N	50000	clone	yes	
S.lycopersicum-chr2	67211381	67336719	219	F	C02SLe0031D11.1	1	125339	+
S.lycopersicum-chr2	67336720	67386719	220	N	50000	contig	no	
S.lycopersicum-chr2	67386720	67525497	221	F	C02HBa0161P02.1	1	138778	-
S.lycopersicum-chr2	67525498	67557903	222	F	C02HBa0031A21.2	100249	132654	+
S.lycopersicum-chr2	67557904	67607903	223	N	50000	clone	yes	
S.lycopersicum-chr2	67607904	67702413	224	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	67702414	67812486	225	F	C02HBa0059M17.2	4964	115036	+