#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119239	12	F	C02HBa0190N21.3	1	144100	+
S.lycopersicum-chr2	2119240	2169239	13	N	50000	contig	no	
S.lycopersicum-chr2	2169240	2283735	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283736	2333735	15	N	50000	contig	no	
S.lycopersicum-chr2	2333736	2455494	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455495	2505494	17	N	50000	contig	no	
S.lycopersicum-chr2	2505495	2640043	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640044	3300000	19	N	659957	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3738139	22	F	C02HBa0320M09.4	1	138139	+
S.lycopersicum-chr2	3738140	3788139	23	N	50000	contig	no	
S.lycopersicum-chr2	3788140	3906451	24	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	3906452	3956451	25	N	50000	contig	no	
S.lycopersicum-chr2	3956452	4079635	26	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4079636	4204286	27	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4204287	4254286	28	N	50000	contig	no	
S.lycopersicum-chr2	4254287	4361618	29	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4361619	4600000	30	N	238382	contig	no	
S.lycopersicum-chr2	4600001	4720889	31	F	C02HBa0072A04.2	1	120889	-
S.lycopersicum-chr2	4720890	4832831	32	F	C02HBa0066C13.2	24227	136168	+
S.lycopersicum-chr2	4832832	7000000	33	N	2167169	contig	no	
S.lycopersicum-chr2	7000001	7080310	34	F	C02SLm0019I01.3	1	80310	+
S.lycopersicum-chr2	7080311	7130310	35	N	50000	clone	yes	
S.lycopersicum-chr2	7130311	7268570	36	F	C02HBa0329G05.3	1	138260	-
S.lycopersicum-chr2	7268571	7393991	37	F	C02HBa0161P02.2	13324	138744	+
S.lycopersicum-chr2	7393992	7443991	38	N	50000	contig	no	
S.lycopersicum-chr2	7443992	7490877	39	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7490878	7540877	40	N	50000	contig	no	
S.lycopersicum-chr2	7540878	7783505	41	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7783506	7833505	42	N	50000	contig	no	
S.lycopersicum-chr2	7833506	7948513	43	F	C02HBa0059M17.3	1	115008	+
S.lycopersicum-chr2	7948514	8019790	44	F	C02HBa0323A14.3	57041	128317	+
S.lycopersicum-chr2	8019791	8069790	45	N	50000	contig	no	
S.lycopersicum-chr2	8069791	8249660	46	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8249661	8299660	47	N	50000	contig	no	
S.lycopersicum-chr2	8299661	8381059	48	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8381060	8394690	49	F	C02SLm0021D12.1	76800	90430	+
S.lycopersicum-chr2	8394691	8443694	50	F	C02SLm0073G04.1	40082	89085	-
S.lycopersicum-chr2	8443695	8493694	51	N	50000	contig	no	
S.lycopersicum-chr2	8493695	8629489	52	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8629490	8708838	53	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8708839	8758838	54	N	50000	clone	yes	
S.lycopersicum-chr2	8758839	8914728	55	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8914729	9026712	56	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	9026713	9050400	57	F	C02HBa0175O20.1	122540	146227	-
S.lycopersicum-chr2	9050401	9127850	58	F	C02HBa0144P17.1	15143	92592	+
S.lycopersicum-chr2	9127851	9177850	59	N	50000	contig	no	
S.lycopersicum-chr2	9177851	9317783	60	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	9317784	9367783	61	N	50000	contig	no	
S.lycopersicum-chr2	9367784	9504022	62	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9504023	9554022	63	N	50000	contig	no	
S.lycopersicum-chr2	9554023	9704448	64	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9704449	9754448	65	N	50000	clone	yes	
S.lycopersicum-chr2	9754449	9884033	66	F	C02HBa0159F19.3	1	129585	+
S.lycopersicum-chr2	9884034	9934033	67	N	50000	contig	no	
S.lycopersicum-chr2	9934034	10046107	68	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	10046108	10096107	69	N	50000	contig	no	
S.lycopersicum-chr2	10096108	10141691	70	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	10141692	10191691	71	N	50000	contig	no	
S.lycopersicum-chr2	10191692	10293463	72	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10293464	10351148	73	F	C02HBa0074A14.2	52672	110356	+
S.lycopersicum-chr2	10351149	10443114	74	F	C02HBa0215M12.1	67801	159766	+
S.lycopersicum-chr2	10443115	10493114	75	N	50000	contig	no	
S.lycopersicum-chr2	10493115	10606827	76	F	C02HBa0164H08.2	1	113713	+
S.lycopersicum-chr2	10606828	10656827	77	N	50000	contig	no	
S.lycopersicum-chr2	10656828	10768871	78	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10768872	10838121	79	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10838122	10965398	80	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	10965399	11015398	81	N	50000	contig	no	
S.lycopersicum-chr2	11015399	11218416	82	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11218417	11268416	83	N	50000	clone	yes	
S.lycopersicum-chr2	11268417	11404235	84	F	C02HBa0011A02.3	1	135819	+
S.lycopersicum-chr2	11404236	11454235	85	N	50000	clone	yes	
S.lycopersicum-chr2	11454236	11586011	86	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	11586012	11652124	87	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	11652125	11702124	88	N	50000	clone	yes	
S.lycopersicum-chr2	11702125	11799275	89	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	11799276	11894309	90	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	11894310	11979927	91	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	11979928	12056451	92	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12056452	12106451	93	N	50000	contig	no	
S.lycopersicum-chr2	12106452	12194114	94	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12194115	12244114	95	N	50000	clone	yes	
S.lycopersicum-chr2	12244115	12386916	96	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12386917	12436916	97	N	50000	contig	no	
S.lycopersicum-chr2	12436917	12572481	98	F	C02HBa0046M08.3	1	135565	+
S.lycopersicum-chr2	12572482	12622481	99	N	50000	contig	no	
S.lycopersicum-chr2	12622482	12757580	100	F	C02HBa0108N03.3	1	135099	+
S.lycopersicum-chr2	12757581	12807580	101	N	50000	clone	yes	
S.lycopersicum-chr2	12807581	12954586	102	F	C02HBa0008G02.1	1	147006	+
S.lycopersicum-chr2	12954587	13030598	103	F	C02SLe0033D19.2	31722	107733	-
S.lycopersicum-chr2	13030599	13080598	104	N	50000	clone	yes	
S.lycopersicum-chr2	13080599	13188087	105	F	C02HBa0111M10.2	1	107489	+
S.lycopersicum-chr2	13188088	13298117	106	F	C02SLm0066K03.3	13009	123038	-
S.lycopersicum-chr2	13298118	13413011	107	F	C02HBa0226F10.1	17204	132097	+
S.lycopersicum-chr2	13413012	13463011	108	N	50000	contig	no	
S.lycopersicum-chr2	13463012	13520335	109	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13520336	13570335	110	N	50000	contig	no	
S.lycopersicum-chr2	13570336	13701356	111	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13701357	13950000	112	N	248644	contig	no	
S.lycopersicum-chr2	13950001	14082204	113	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	114	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	115	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337437	116	F	C02HBa0194L19.3	1	122649	-
S.lycopersicum-chr2	14337438	14447445	117	F	C02HBa0072B02.3	5372	115379	+
S.lycopersicum-chr2	14447446	14497445	118	N	50000	contig	no	
S.lycopersicum-chr2	14497446	14606039	119	F	C02HBa0032J10.4	1	108594	+
S.lycopersicum-chr2	14606040	14656039	120	N	50000	clone	yes	
S.lycopersicum-chr2	14656040	14806467	121	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14806468	60000000	122	N	45193533	contig	no	
S.lycopersicum-chr2	60000001	60108787	123	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	60108788	60158787	124	N	50000	contig	no	
S.lycopersicum-chr2	60158788	60230182	125	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	60230183	60280182	126	N	50000	contig	no	
S.lycopersicum-chr2	60280183	60370861	127	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	60370862	60420861	128	N	50000	contig	no	
S.lycopersicum-chr2	60420862	60538365	129	F	C02HBa0101G09.2	1	117504	+
S.lycopersicum-chr2	60538366	60588365	130	N	50000	contig	no	
S.lycopersicum-chr2	60588366	60660622	131	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	60660623	60710622	132	N	50000	contig	no	
S.lycopersicum-chr2	60710623	60823414	133	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	60823415	60873414	134	N	50000	contig	no	
S.lycopersicum-chr2	60873415	61022818	135	F	C02HBa0115F06.1	1	149404	+
S.lycopersicum-chr2	61022819	61072818	136	N	50000	contig	no	
S.lycopersicum-chr2	61072819	61201572	137	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	61201573	61251572	138	N	50000	contig	no	
S.lycopersicum-chr2	61251573	61413689	139	F	C02SLm0127N23.1	1	162117	+
S.lycopersicum-chr2	61413690	61463689	140	N	50000	contig	no	
S.lycopersicum-chr2	61463690	61531094	141	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	61531095	61581094	142	N	50000	contig	no	
S.lycopersicum-chr2	61581095	61619961	143	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	61619962	61669961	144	N	50000	contig	no	
S.lycopersicum-chr2	61669962	61784721	145	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	61784722	61834721	146	N	50000	contig	no	
S.lycopersicum-chr2	61834722	61957396	147	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	61957397	62007396	148	N	50000	contig	no	
S.lycopersicum-chr2	62007397	62101906	149	F	C02SLe0075O22.1	1	94510	+
S.lycopersicum-chr2	62101907	62151906	150	N	50000	contig	no	
S.lycopersicum-chr2	62151907	62273897	151	F	C02HBa0044J01.1	1	121991	+
S.lycopersicum-chr2	62273898	62323897	152	N	50000	contig	no	
S.lycopersicum-chr2	62323898	62386358	153	F	C02HBa0138P10.1	1	62461	+
S.lycopersicum-chr2	62386359	62436358	154	N	50000	contig	no	
S.lycopersicum-chr2	62436359	62526152	155	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	62526153	62576152	156	N	50000	contig	no	
S.lycopersicum-chr2	62576153	62667503	157	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	62667504	62717503	158	N	50000	contig	no	
S.lycopersicum-chr2	62717504	62809082	159	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	62809083	62859082	160	N	50000	contig	no	
S.lycopersicum-chr2	62859083	62999338	161	F	C02HBa0172G12.2	1	140256	+
S.lycopersicum-chr2	62999339	63049338	162	N	50000	contig	no	
S.lycopersicum-chr2	63049339	63159537	163	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	63159538	63209537	164	N	50000	contig	no	
S.lycopersicum-chr2	63209538	63367849	165	F	C02SLm0132H19.1	1	158312	+
S.lycopersicum-chr2	63367850	63417849	166	N	50000	contig	no	
S.lycopersicum-chr2	63417850	63518902	167	F	C02HBa0035P05.1	1	101053	+
S.lycopersicum-chr2	63518903	63568902	168	N	50000	contig	no	
S.lycopersicum-chr2	63568903	63693383	169	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	63693384	63743383	170	N	50000	contig	no	
S.lycopersicum-chr2	63743384	63868119	171	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	63868120	63918119	172	N	50000	contig	no	
S.lycopersicum-chr2	63918120	64033116	173	F	C02SLe0065H17.1	1	114997	+
S.lycopersicum-chr2	64033117	64083116	174	N	50000	contig	no	
S.lycopersicum-chr2	64083117	64202617	175	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	64202618	64252617	176	N	50000	contig	no	
S.lycopersicum-chr2	64252618	64394922	177	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	64394923	64444922	178	N	50000	contig	no	
S.lycopersicum-chr2	64444923	64560205	179	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	64560206	64610205	180	N	50000	contig	no	
S.lycopersicum-chr2	64610206	64685338	181	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	64685339	64735338	182	N	50000	contig	no	
S.lycopersicum-chr2	64735339	64864326	183	F	C02SLe0054B08.1	1	128988	+
S.lycopersicum-chr2	64864327	64914326	184	N	50000	contig	no	
S.lycopersicum-chr2	64914327	65012376	185	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	65012377	65062376	186	N	50000	contig	no	
S.lycopersicum-chr2	65062377	65174274	187	F	C02HBa0054K23.1	1	111898	+
S.lycopersicum-chr2	65174275	65224274	188	N	50000	contig	no	
S.lycopersicum-chr2	65224275	65334333	189	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	65334334	65384333	190	N	50000	contig	no	
S.lycopersicum-chr2	65384334	65495849	191	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	65495850	65545849	192	N	50000	contig	no	
S.lycopersicum-chr2	65545850	65629880	193	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	65629881	65679880	194	N	50000	contig	no	
S.lycopersicum-chr2	65679881	65742045	195	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	65742046	65792045	196	N	50000	contig	no	
S.lycopersicum-chr2	65792046	65916477	197	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	65916478	65966477	198	N	50000	contig	no	
S.lycopersicum-chr2	65966478	66099131	199	F	C02HBa0031A21.2	1	132654	+
S.lycopersicum-chr2	66099132	66149131	200	N	50000	contig	no	
S.lycopersicum-chr2	66149132	66232462	201	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	66232463	66282462	202	N	50000	contig	no	
S.lycopersicum-chr2	66282463	66316081	203	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	66316082	66366081	204	N	50000	contig	no	
S.lycopersicum-chr2	66366082	66501361	205	F	C02HBa0023N04.3	1	135280	+
S.lycopersicum-chr2	66501362	66551361	206	N	50000	contig	no	
S.lycopersicum-chr2	66551362	66697281	207	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	66697282	66747281	208	N	50000	contig	no	
S.lycopersicum-chr2	66747282	66898443	209	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	66898444	66948443	210	N	50000	contig	no	
S.lycopersicum-chr2	66948444	67036275	211	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	67036276	67086275	212	N	50000	contig	no	
S.lycopersicum-chr2	67086276	67201860	213	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	67201861	67292835	214	F	C02SLe0053H21.1	56220	147194	-
S.lycopersicum-chr2	67292836	67342835	215	N	50000	contig	no	
S.lycopersicum-chr2	67342836	67441327	216	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	67441328	67596538	217	F	C02HBa0155E05.3	3838	159048	+
S.lycopersicum-chr2	67596539	67646538	218	N	50000	contig	no	
S.lycopersicum-chr2	67646539	67770616	219	F	C02HBa0146O16.1	1	124078	-
S.lycopersicum-chr2	67770617	67824636	220	F	C02HBa0030E13.1	56662	110681	+
S.lycopersicum-chr2	67824637	67874636	221	N	50000	contig	no	
S.lycopersicum-chr2	67874637	67992365	222	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	67992366	68042365	223	N	50000	clone	yes	
S.lycopersicum-chr2	68042366	68167704	224	F	C02SLe0031D11.1	1	125339	+
S.lycopersicum-chr2	68167705	68217704	225	N	50000	contig	no	
S.lycopersicum-chr2	68217705	68328586	226	F	C02HBa0116F10.1	1	110882	+
S.lycopersicum-chr2	68328587	68378586	227	N	50000	clone	yes	
S.lycopersicum-chr2	68378587	68558490	228	F	C02SLm0128E12.1	1	179904	+
S.lycopersicum-chr2	68558491	68582156	229	F	C02HBa0106H06.1	81643	105308	+
S.lycopersicum-chr2	68582157	68585941	230	F	C02SLm0097L01.2	33780	37564	-