#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393744	4	F	C02HBa0323C04.1	1	162197	+
S.lycopersicum-chr2	393745	1300000	5	N	906256	contig	no	
S.lycopersicum-chr2	1300001	1433012	6	F	C02HBa0303I24.1	1	133012	+
S.lycopersicum-chr2	1433013	1600000	7	N	166988	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119263	12	F	C02HBa0025N15.1	1	125151	+
S.lycopersicum-chr2	2119264	2169263	13	N	50000	contig	no	
S.lycopersicum-chr2	2169264	2283771	14	F	C02HBa0280E02.1	1	114508	+
S.lycopersicum-chr2	2283772	2500000	15	N	216229	contig	no	
S.lycopersicum-chr2	2500001	2634560	16	F	C02HBa0209K17.1	1	134560	+
S.lycopersicum-chr2	2634561	3300000	17	N	665440	contig	no	
S.lycopersicum-chr2	3300001	3417181	18	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	19	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072170	24	F	C02HBa0155C04.2	1	118331	+
S.lycopersicum-chr2	4072171	4103652	25	F	C02HBa0168N10.1	75871	107352	-
S.lycopersicum-chr2	4103653	4164636	26	F	C02SLm0045L06.2	10412	71395	+
S.lycopersicum-chr2	4164637	4600000	27	N	435364	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138270	31	F	C02HBa0329G05.2	1	138270	+
S.lycopersicum-chr2	7138271	7188270	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188271	7268589	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268590	7318589	34	N	50000	contig	no	
S.lycopersicum-chr2	7318590	7365475	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365476	7415475	36	N	50000	contig	no	
S.lycopersicum-chr2	7415476	7658103	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658104	7708103	38	N	50000	contig	no	
S.lycopersicum-chr2	7708104	7836437	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836438	7886437	40	N	50000	contig	no	
S.lycopersicum-chr2	7886438	8066307	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066308	8116307	42	N	50000	contig	no	
S.lycopersicum-chr2	8116308	8272209	43	F	C02HBa0320D04.1	1	155902	+
S.lycopersicum-chr2	8272210	8322209	44	N	50000	contig	no	
S.lycopersicum-chr2	8322210	8403608	45	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8403609	8453608	46	N	50000	contig	no	
S.lycopersicum-chr2	8453609	8593541	47	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8593542	8643541	48	N	50000	contig	no	
S.lycopersicum-chr2	8643542	8779336	49	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8779337	8858689	50	F	C02SLm0049G16.1	35696	115048	+
S.lycopersicum-chr2	8858690	8908689	51	N	50000	contig	no	
S.lycopersicum-chr2	8908690	9044928	52	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9044929	9094928	53	N	50000	contig	no	
S.lycopersicum-chr2	9094929	9245367	54	F	C02HBa0060J03.1	1	150439	+
S.lycopersicum-chr2	9245368	9295367	55	N	50000	clone	yes	
S.lycopersicum-chr2	9295368	9424964	56	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9424965	9474964	57	N	50000	contig	no	
S.lycopersicum-chr2	9474965	9587038	58	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9587039	9637038	59	N	50000	contig	no	
S.lycopersicum-chr2	9637039	9682634	60	F	C02HBa0213A01.1	1	45596	+
S.lycopersicum-chr2	9682635	9732634	61	N	50000	contig	no	
S.lycopersicum-chr2	9732635	9867926	62	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9867927	9917926	63	N	50000	clone	yes	
S.lycopersicum-chr2	9917927	10023234	64	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10023235	10027023	65	F	C02SLm0097L01.1	33784	37572	-
S.lycopersicum-chr2	10027024	10077023	66	N	50000	clone	yes	
S.lycopersicum-chr2	10077024	10179119	67	F	C02HBa0030A21.1	1	102096	-
S.lycopersicum-chr2	10179120	10236554	68	F	C02HBa0074A14.1	53002	110436	+
S.lycopersicum-chr2	10236555	10328447	69	F	C02HBa0215M12.1	67874	159766	+
S.lycopersicum-chr2	10328448	10378447	70	N	50000	contig	no	
S.lycopersicum-chr2	10378448	10492176	71	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10492177	10542176	72	N	50000	contig	no	
S.lycopersicum-chr2	10542177	10690379	73	F	C02HBa0180C05.1	1	148203	-
S.lycopersicum-chr2	10690380	10793292	74	F	C02HBa0134G09.1	20927	123839	+
S.lycopersicum-chr2	10793293	10843292	75	N	50000	contig	no	
S.lycopersicum-chr2	10843293	10979123	76	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	10979124	11029123	77	N	50000	clone	yes	
S.lycopersicum-chr2	11029124	11232141	78	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11232142	11282141	79	N	50000	contig	no	
S.lycopersicum-chr2	11282142	11361646	80	F	C02SLm0014P22.1	1	79505	+
S.lycopersicum-chr2	11361647	11411646	81	N	50000	clone	yes	
S.lycopersicum-chr2	11411647	11508805	82	F	C02SLm0065M14.1	1	97159	-
S.lycopersicum-chr2	11508806	11603835	83	F	C02HBa0016A12.2	19548	114577	+
S.lycopersicum-chr2	11603836	11653835	84	N	50000	contig	no	
S.lycopersicum-chr2	11653836	11789412	85	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	11789413	11839412	86	N	50000	contig	no	
S.lycopersicum-chr2	11839413	11946913	87	F	C02HBa0111M10.1	1	107501	+
S.lycopersicum-chr2	11946914	12056940	88	F	C02SLm0066K03.2	13050	123076	-
S.lycopersicum-chr2	12056941	12171830	89	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	12171831	12221830	90	N	50000	contig	no	
S.lycopersicum-chr2	12221831	12352851	91	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	12352852	13950000	92	N	1597149	contig	no	
S.lycopersicum-chr2	13950001	14082217	93	F	C02HBa0064B17.2	1	132217	+
S.lycopersicum-chr2	14082218	14164799	94	F	C02SLm0055O24.1	12207	94788	-
S.lycopersicum-chr2	14164800	14214799	95	N	50000	contig	no	
S.lycopersicum-chr2	14214800	14337460	96	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337461	14447468	97	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447469	14497468	98	N	50000	contig	no	
S.lycopersicum-chr2	14497469	14610770	99	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610771	14660770	100	N	50000	clone	yes	
S.lycopersicum-chr2	14660771	14811248	101	F	C02HBa0177F12.2	1	150478	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811249	60000000	102	N	45188752	contig	no	
S.lycopersicum-chr2	60000001	60107745	103	F	C02SLe0033D19.1	1	107745	+
S.lycopersicum-chr2	60107746	60157745	104	N	50000	contig	no	
S.lycopersicum-chr2	60157746	60266540	105	F	C02SLm0042B19.1	1	108795	+
S.lycopersicum-chr2	60266541	60316540	106	N	50000	contig	no	
S.lycopersicum-chr2	60316541	60355407	107	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	60355408	60405407	108	N	50000	contig	no	
S.lycopersicum-chr2	60405408	60534170	109	F	C02SLm0020N19.1	1	128763	+
S.lycopersicum-chr2	60534171	60584170	110	N	50000	contig	no	
S.lycopersicum-chr2	60584171	60735332	111	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	60735333	60785332	112	N	50000	contig	no	
S.lycopersicum-chr2	60785333	60900092	113	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	60900093	60950092	114	N	50000	contig	no	
S.lycopersicum-chr2	60950093	61069593	115	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	61069594	61119593	116	N	50000	contig	no	
S.lycopersicum-chr2	61119594	61237322	117	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	61237323	61287322	118	N	50000	contig	no	
S.lycopersicum-chr2	61287323	61433254	119	F	C02HBa0090O01.1	1	145932	+
S.lycopersicum-chr2	61433255	61483254	120	N	50000	contig	no	
S.lycopersicum-chr2	61483255	61558387	121	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	61558388	61608387	122	N	50000	contig	no	
S.lycopersicum-chr2	61608388	61733123	123	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61733124	61783123	124	N	50000	contig	no	
S.lycopersicum-chr2	61783124	61874474	125	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	61874475	61924474	126	N	50000	contig	no	
S.lycopersicum-chr2	61924475	62037266	127	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	62037267	62087266	128	N	50000	contig	no	
S.lycopersicum-chr2	62087267	62210462	129	F	C02HBa0162I09.1	1	123196	+
S.lycopersicum-chr2	62210463	62260462	130	N	50000	contig	no	
S.lycopersicum-chr2	62260463	62370673	131	F	C02SLe0042D07.1	1	110211	+
S.lycopersicum-chr2	62370674	62420673	132	N	50000	contig	no	
S.lycopersicum-chr2	62420674	62511352	133	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	62511353	62561352	134	N	50000	contig	no	
S.lycopersicum-chr2	62561353	62644691	135	F	C02SLm0065K08.1	1	83339	+
S.lycopersicum-chr2	62644692	62694691	136	N	50000	contig	no	
S.lycopersicum-chr2	62694692	62810288	137	F	C02HBa0155D20.1	1	115597	+
S.lycopersicum-chr2	62810289	62860288	138	N	50000	contig	no	
S.lycopersicum-chr2	62860289	62984812	139	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	62984813	63034812	140	N	50000	contig	no	
S.lycopersicum-chr2	63034813	63150095	141	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63150096	63200095	142	N	50000	contig	no	
S.lycopersicum-chr2	63200096	63340363	143	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	63340364	63390363	144	N	50000	contig	no	
S.lycopersicum-chr2	63390364	63462632	145	F	C02HBa0257H21.1	1	72269	+
S.lycopersicum-chr2	63462633	63512632	146	N	50000	contig	no	
S.lycopersicum-chr2	63512633	63596663	147	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	63596664	63646663	148	N	50000	contig	no	
S.lycopersicum-chr2	63646664	63744721	149	F	C02SLm0064E19.1	1	98058	-
S.lycopersicum-chr2	63744722	63859408	150	F	C02HBa0160F05.1	8001	122687	+
S.lycopersicum-chr2	63859409	63909408	151	N	50000	contig	no	
S.lycopersicum-chr2	63909409	64007900	152	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	64007901	64163115	153	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	64163116	64213115	154	N	50000	contig	no	
S.lycopersicum-chr2	64213116	64351895	155	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	64351896	64384301	156	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	64384302	64434301	157	N	50000	clone	yes	
S.lycopersicum-chr2	64434302	64528811	158	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	64528812	64638884	159	F	C02HBa0059M17.2	4964	115036	+