#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393744	4	F	C02HBa0323C04.1	1	162197	+
S.lycopersicum-chr2	393745	1300000	5	N	906256	contig	no	
S.lycopersicum-chr2	1300001	1433012	6	F	C02HBa0303I24.1	1	133012	+
S.lycopersicum-chr2	1433013	1600000	7	N	166988	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119263	12	F	C02HBa0025N15.1	1	125151	+
S.lycopersicum-chr2	2119264	2169263	13	N	50000	contig	no	
S.lycopersicum-chr2	2169264	2283771	14	F	C02HBa0280E02.1	1	114508	+
S.lycopersicum-chr2	2283772	2500000	15	N	216229	contig	no	
S.lycopersicum-chr2	2500001	2634560	16	F	C02HBa0209K17.1	1	134560	+
S.lycopersicum-chr2	2634561	3300000	17	N	665440	contig	no	
S.lycopersicum-chr2	3300001	3417181	18	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	19	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072170	24	F	C02HBa0155C04.2	1	118331	+
S.lycopersicum-chr2	4072171	4103652	25	F	C02HBa0168N10.1	75871	107352	-
S.lycopersicum-chr2	4103653	4164636	26	F	C02SLm0045L06.2	10412	71395	+
S.lycopersicum-chr2	4164637	4600000	27	N	435364	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138270	31	F	C02HBa0329G05.2	1	138270	+
S.lycopersicum-chr2	7138271	7188270	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188271	7268589	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268590	7318589	34	N	50000	contig	no	
S.lycopersicum-chr2	7318590	7365475	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365476	7415475	36	N	50000	contig	no	
S.lycopersicum-chr2	7415476	7658103	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658104	7708103	38	N	50000	contig	no	
S.lycopersicum-chr2	7708104	7836437	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836438	7886437	40	N	50000	contig	no	
S.lycopersicum-chr2	7886438	8066307	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066308	8116307	42	N	50000	contig	no	
S.lycopersicum-chr2	8116308	8272209	43	F	C02HBa0320D04.1	1	155902	+
S.lycopersicum-chr2	8272210	8322209	44	N	50000	contig	no	
S.lycopersicum-chr2	8322210	8403608	45	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8403609	8453608	46	N	50000	contig	no	
S.lycopersicum-chr2	8453609	8593541	47	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8593542	8643541	48	N	50000	contig	no	
S.lycopersicum-chr2	8643542	8779336	49	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8779337	8858689	50	F	C02SLm0049G16.1	35696	115048	+
S.lycopersicum-chr2	8858690	8908689	51	N	50000	contig	no	
S.lycopersicum-chr2	8908690	9044928	52	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9044929	9094928	53	N	50000	contig	no	
S.lycopersicum-chr2	9094929	9245367	54	F	C02HBa0060J03.1	1	150439	+
S.lycopersicum-chr2	9245368	9295367	55	N	50000	clone	yes	
S.lycopersicum-chr2	9295368	9424964	56	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9424965	9474964	57	N	50000	contig	no	
S.lycopersicum-chr2	9474965	9587038	58	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9587039	9637038	59	N	50000	contig	no	
S.lycopersicum-chr2	9637039	9682634	60	F	C02HBa0213A01.1	1	45596	+
S.lycopersicum-chr2	9682635	9732634	61	N	50000	contig	no	
S.lycopersicum-chr2	9732635	9867926	62	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9867927	9917926	63	N	50000	clone	yes	
S.lycopersicum-chr2	9917927	9955498	64	F	C02SLm0097L01.1	1	37572	+
S.lycopersicum-chr2	9955499	10005498	65	N	50000	clone	yes	
S.lycopersicum-chr2	10005499	10110806	66	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10110807	10202175	67	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10202176	10252175	68	N	50000	clone	yes	
S.lycopersicum-chr2	10252176	10354271	69	F	C02HBa0030A21.1	1	102096	-
S.lycopersicum-chr2	10354272	10411706	70	F	C02HBa0074A14.1	53002	110436	+
S.lycopersicum-chr2	10411707	10503599	71	F	C02HBa0215M12.1	67874	159766	+
S.lycopersicum-chr2	10503600	10553599	72	N	50000	contig	no	
S.lycopersicum-chr2	10553600	10667328	73	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10667329	10717328	74	N	50000	contig	no	
S.lycopersicum-chr2	10717329	10829372	75	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10829373	10898622	76	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10898623	11025899	77	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11025900	11075899	78	N	50000	contig	no	
S.lycopersicum-chr2	11075900	11155404	79	F	C02SLm0014P22.1	1	79505	+
S.lycopersicum-chr2	11155405	11205404	80	N	50000	clone	yes	
S.lycopersicum-chr2	11205405	11302563	81	F	C02SLm0065M14.1	1	97159	-
S.lycopersicum-chr2	11302564	11397593	82	F	C02HBa0016A12.2	19548	114577	+
S.lycopersicum-chr2	11397594	11447593	83	N	50000	contig	no	
S.lycopersicum-chr2	11447594	11650611	84	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11650612	11700611	85	N	50000	clone	yes	
S.lycopersicum-chr2	11700612	11836442	86	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11836443	11849023	87	F	C02HBa0031A13.1	76531	89111	+
S.lycopersicum-chr2	11849024	11899023	88	N	50000	contig	no	
S.lycopersicum-chr2	11899024	11986686	89	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	11986687	12036686	90	N	50000	contig	no	
S.lycopersicum-chr2	12036687	12172263	91	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	12172264	12222263	92	N	50000	contig	no	
S.lycopersicum-chr2	12222264	12329764	93	F	C02HBa0111M10.1	1	107501	+
S.lycopersicum-chr2	12329765	12439791	94	F	C02SLm0066K03.2	13050	123076	-
S.lycopersicum-chr2	12439792	12554681	95	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	12554682	12604681	96	N	50000	contig	no	
S.lycopersicum-chr2	12604682	12662005	97	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	12662006	12712005	98	N	50000	contig	no	
S.lycopersicum-chr2	12712006	12843026	99	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	12843027	13950000	100	N	1106974	contig	no	
S.lycopersicum-chr2	13950001	14082217	101	F	C02HBa0064B17.2	1	132217	+
S.lycopersicum-chr2	14082218	14164799	102	F	C02SLm0055O24.1	12207	94788	-
S.lycopersicum-chr2	14164800	14214799	103	N	50000	contig	no	
S.lycopersicum-chr2	14214800	14337460	104	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337461	14447468	105	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447469	14497468	106	N	50000	contig	no	
S.lycopersicum-chr2	14497469	14610770	107	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610771	14660770	108	N	50000	clone	yes	
S.lycopersicum-chr2	14660771	14811248	109	F	C02HBa0177F12.2	1	150478	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811249	60000000	110	N	45188752	contig	no	
S.lycopersicum-chr2	60000001	60083339	111	F	C02SLm0065K08.1	1	83339	+
S.lycopersicum-chr2	60083340	60133339	112	N	50000	contig	no	
S.lycopersicum-chr2	60133340	60248936	113	F	C02HBa0155D20.1	1	115597	+
S.lycopersicum-chr2	60248937	60298936	114	N	50000	contig	no	
S.lycopersicum-chr2	60298937	60407731	115	F	C02SLm0042B19.1	1	108795	+
S.lycopersicum-chr2	60407732	60457731	116	N	50000	contig	no	
S.lycopersicum-chr2	60457732	60549082	117	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	60549083	60599082	118	N	50000	contig	no	
S.lycopersicum-chr2	60599083	60706827	119	F	C02SLe0033D19.1	1	107745	+
S.lycopersicum-chr2	60706828	60756827	120	N	50000	contig	no	
S.lycopersicum-chr2	60756828	60885581	121	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	60885582	60935581	122	N	50000	contig	no	
S.lycopersicum-chr2	60935582	61075849	123	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	61075850	61125849	124	N	50000	contig	no	
S.lycopersicum-chr2	61125850	61217428	125	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	61217429	61267428	126	N	50000	contig	no	
S.lycopersicum-chr2	61267429	61380220	127	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	61380221	61430220	128	N	50000	contig	no	
S.lycopersicum-chr2	61430221	61554744	129	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	61554745	61604744	130	N	50000	contig	no	
S.lycopersicum-chr2	61604745	61755906	131	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	61755907	61805906	132	N	50000	contig	no	
S.lycopersicum-chr2	61805907	61948211	133	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	61948212	61998211	134	N	50000	contig	no	
S.lycopersicum-chr2	61998212	62088890	135	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	62088891	62138890	136	N	50000	contig	no	
S.lycopersicum-chr2	62138891	62256619	137	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	62256620	62306619	138	N	50000	contig	no	
S.lycopersicum-chr2	62306620	62381752	139	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	62381753	62431752	140	N	50000	contig	no	
S.lycopersicum-chr2	62431753	62547035	141	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	62547036	62597035	142	N	50000	contig	no	
S.lycopersicum-chr2	62597036	62669304	143	F	C02HBa0257H21.1	1	72269	+
S.lycopersicum-chr2	62669305	62719304	144	N	50000	contig	no	
S.lycopersicum-chr2	62719305	62865236	145	F	C02HBa0090O01.1	1	145932	+
S.lycopersicum-chr2	62865237	62915236	146	N	50000	contig	no	
S.lycopersicum-chr2	62915237	62999267	147	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	62999268	63049267	148	N	50000	contig	no	
S.lycopersicum-chr2	63049268	63088134	149	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	63088135	63138134	150	N	50000	contig	no	
S.lycopersicum-chr2	63138135	63200299	151	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	63200300	63250299	152	N	50000	contig	no	
S.lycopersicum-chr2	63250300	63375035	153	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	63375036	63425035	154	N	50000	contig	no	
S.lycopersicum-chr2	63425036	63539795	155	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	63539796	63589795	156	N	50000	contig	no	
S.lycopersicum-chr2	63589796	63700006	157	F	C02SLe0042D07.1	1	110211	+
S.lycopersicum-chr2	63700007	63750006	158	N	50000	contig	no	
S.lycopersicum-chr2	63750007	63861522	159	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	63861523	63911522	160	N	50000	contig	no	
S.lycopersicum-chr2	63911523	64034718	161	F	C02HBa0162I09.1	1	123196	+
S.lycopersicum-chr2	64034719	64084718	162	N	50000	contig	no	
S.lycopersicum-chr2	64084719	64194777	163	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	64194778	64244777	164	N	50000	contig	no	
S.lycopersicum-chr2	64244778	64364278	165	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	64364279	64414278	166	N	50000	contig	no	
S.lycopersicum-chr2	64414279	64512770	167	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	64512771	64667985	168	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	64667986	64717985	169	N	50000	contig	no	
S.lycopersicum-chr2	64717986	64816043	170	F	C02SLm0064E19.1	1	98058	-
S.lycopersicum-chr2	64816044	64930730	171	F	C02HBa0160F05.1	8001	122687	+
S.lycopersicum-chr2	64930731	64980730	172	N	50000	contig	no	
S.lycopersicum-chr2	64980731	65119510	173	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65119511	65151916	174	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65151917	65201916	175	N	50000	clone	yes	
S.lycopersicum-chr2	65201917	65296426	176	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	65296427	65406499	177	F	C02HBa0059M17.2	4964	115036	+