#Draft Tomato chromosome 3
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr3	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr3	50001	171976	2	F	C03HBa0161O13.1	1	121976	+
S.lycopersicum-chr3	171977	221976	3	N	50000	contig	no	
S.lycopersicum-chr3	221977	279203	4	F	C03HBa0020P05.1	1	57227	+
S.lycopersicum-chr3	279204	3000000	5	N	2720797	contig	no	
S.lycopersicum-chr3	3000001	3110892	6	F	C03HBa0137K15.1	1	110892	+
S.lycopersicum-chr3	3110893	5900000	7	N	2789108	contig	no	
S.lycopersicum-chr3	5900001	6005794	8	F	C03HBa0030A11.1	1	105794	+
S.lycopersicum-chr3	6005795	7200000	9	N	1194206	contig	no	
S.lycopersicum-chr3	7200001	7334937	10	F	C03HBa0007J09.1	1	134937	+
S.lycopersicum-chr3	7334938	7384937	11	N	50000	contig	no	
S.lycopersicum-chr3	7384938	7470581	12	F	C03HBa0098B03.1	1	85644	+
S.lycopersicum-chr3	7470582	7520581	13	N	50000	contig	no	
S.lycopersicum-chr3	7520582	7642680	14	F	C03HBa0254B14.1	1	122099	+
S.lycopersicum-chr3	7642681	7692680	15	N	50000	contig	no	
S.lycopersicum-chr3	7692681	7819645	16	F	C03HBa0127K18.1	1	126965	+
S.lycopersicum-chr3	7819646	7869645	17	N	50000	contig	no	
S.lycopersicum-chr3	7869646	7984467	18	F	C03HBa0298P15.1	1	114822	+
S.lycopersicum-chr3	7984468	9200000	19	N	1215533	contig	no	
S.lycopersicum-chr3	9200001	9282956	20	F	C03HBa0040F22.1	1	82956	+
S.lycopersicum-chr3	9282957	9332956	21	N	50000	clone	yes	
S.lycopersicum-chr3	9332957	9466026	22	F	C03SLm0100M07.1	1	133070	+
S.lycopersicum-chr3	9466027	9600000	23	N	133974	contig	no	
S.lycopersicum-chr3	9600001	9765849	24	F	C03HBa0054O21.1	1	165849	+
S.lycopersicum-chr3	9765850	9815849	25	N	50000	contig	no	
S.lycopersicum-chr3	9815850	9837775	26	F	C03HBa0191E01.1	1	21926	+
S.lycopersicum-chr3	9837776	10425000	27	N	587225	contig	no	
S.lycopersicum-chr3	10425001	10506445	28	F	C03HBa0036B17.1	1	81445	+
S.lycopersicum-chr3	10506446	10556445	29	N	50000	clone	yes	
S.lycopersicum-chr3	10556446	10673428	30	F	C03HBa0203K13.1	1	116983	+
S.lycopersicum-chr3	10673429	10723428	31	N	50000	contig	no	
S.lycopersicum-chr3	10723429	10841155	32	F	C03HBa0233O20.1	1	117727	-
S.lycopersicum-chr3	10841156	10955949	33	F	C03HBa0074E24.1	2323	117116	+
S.lycopersicum-chr3	10955950	11005949	34	N	50000	contig	no	
S.lycopersicum-chr3	11005950	11096052	35	F	C03HBa0054D24.1	1	90103	+
S.lycopersicum-chr3	11096053	11146052	36	N	50000	contig	no	
S.lycopersicum-chr3	11146053	11260338	37	F	C03HBa0318C22.1	1	114286	+
S.lycopersicum-chr3	11260339	12300000	38	N	1039662	contig	no	
S.lycopersicum-chr3	12300001	12402153	39	F	C03HBa0323D22.1	1	102153	+
S.lycopersicum-chr3	12402154	12800000	40	N	397847	contig	no	
S.lycopersicum-chr3	12800001	12910756	41	F	C03HBa0108K05.1	1	110756	+
S.lycopersicum-chr3	12910757	13300000	42	N	389244	contig	no	
S.lycopersicum-chr3	13300001	13356283	43	F	C03HBa0166B15.1	1	56283	+
S.lycopersicum-chr3	13356284	13406283	44	N	50000	clone	yes	
S.lycopersicum-chr3	13406284	13519964	45	F	C03HBa0012D06.1	1	113681	+
S.lycopersicum-chr3	13519965	13586827	46	F	C03SLe0090P17.1	36739	103601	-
S.lycopersicum-chr3	13586828	13700000	47	N	113173	contig	no	
S.lycopersicum-chr3	13700001	13826477	48	F	C03HBa0034B23.2	1	126477	+
S.lycopersicum-chr3	13826478	13876477	49	N	50000	clone	yes	
S.lycopersicum-chr3	13876478	14021185	50	F	C03HBa0035B17.1	1	144708	+
S.lycopersicum-chr3	14021186	14071185	51	N	50000	contig	no	
S.lycopersicum-chr3	14071186	14194501	52	F	C03HBa0033A22.1	1	123316	+
S.lycopersicum-chr3	14194502	14244501	53	N	50000	contig	no	
S.lycopersicum-chr3	14244502	14389365	54	F	C03HBa0029M12.1	1	144864	+
S.lycopersicum-chr3	14389366	15700000	55	N	1310635	contig	no	
S.lycopersicum-chr3	15700001	15789551	56	F	C03HBa0043F15.1	1	89551	+
S.lycopersicum-chr3	15789552	16000000	57	N	210449	contig	no	
S.lycopersicum-chr3	16000001	16119102	58	F	C03HBa0001E24.1	1	119102	+
S.lycopersicum-chr3	16119103	16169102	59	N	50000	clone	yes	
S.lycopersicum-chr3	16169103	16241742	60	F	C03HBa0079K08.1	1	72640	+
S.lycopersicum-chr3	16241743	16400000	61	N	158258	contig	no	
S.lycopersicum-chr3	16400001	16431852	62	F	C03HBa0295I12.1	1	31852	+
S.lycopersicum-chr3	16431853	16700000	63	N	268148	contig	no	
S.lycopersicum-chr3	16700001	16855537	64	F	C03HBa0224P23.1	1	155537	+
S.lycopersicum-chr3	16855538	16905537	65	N	50000	contig	no	
S.lycopersicum-chr3	16905538	17096450	66	F	C03HBa0143N09.1	1	190913	+
S.lycopersicum-chr3	17096451	17146450	67	N	50000	contig	no	
S.lycopersicum-chr3	17146451	17266405	68	F	C03HBa0030O03.1	1	119955	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr3	17266406	60000000	69	N	42733595	contig	no	
S.lycopersicum-chr3	60000001	60120802	70	F	C03HBa0030F10.1	1	120802	+
S.lycopersicum-chr3	60120803	60170802	71	N	50000	contig	no	
S.lycopersicum-chr3	60170803	60318163	72	F	C03HBa0133B03.1	1	147361	+
S.lycopersicum-chr3	60318164	60368163	73	N	50000	contig	no	
S.lycopersicum-chr3	60368164	60375190	74	F	C03HBa0001G02.1	1	7027	+
S.lycopersicum-chr3	60375191	60425190	75	N	50000	contig	no	
S.lycopersicum-chr3	60425191	60433924	76	F	C03HBa0192B12.1	1	8734	+
S.lycopersicum-chr3	60433925	60483924	77	N	50000	contig	no	
S.lycopersicum-chr3	60483925	60509823	78	F	C03HBa0088L10.1	1	25899	+
S.lycopersicum-chr3	60509824	60559823	79	N	50000	contig	no	
S.lycopersicum-chr3	60559824	60690806	80	F	C03HBa0001E15.1	1	130983	+
S.lycopersicum-chr3	60690807	60740806	81	N	50000	contig	no	
S.lycopersicum-chr3	60740807	60904723	82	F	C03HBa0071P11.1	1	163917	+
S.lycopersicum-chr3	60904724	60954723	83	N	50000	contig	no	
S.lycopersicum-chr3	60954724	61097231	84	F	C03HBa0052G03.1	1	142508	+
S.lycopersicum-chr3	61097232	61147231	85	N	50000	contig	no	
S.lycopersicum-chr3	61147232	61206661	86	F	C03HBa0049I23.1	1	59430	+
S.lycopersicum-chr3	61206662	61256661	87	N	50000	contig	no	
S.lycopersicum-chr3	61256662	61362748	88	F	C03HBa0140L21.1	1	106087	+
S.lycopersicum-chr3	61362749	61412748	89	N	50000	contig	no	
S.lycopersicum-chr3	61412749	61540855	90	F	C03HBa0060B10.1	1	128107	+
S.lycopersicum-chr3	61540856	61590855	91	N	50000	contig	no	
S.lycopersicum-chr3	61590856	61741203	92	F	C03HBa0213E04.1	1	150348	+
S.lycopersicum-chr3	61741204	61791203	93	N	50000	contig	no	
S.lycopersicum-chr3	61791204	61854663	94	F	C03HBa0050K23.1	1	63460	+
S.lycopersicum-chr3	61854664	61904663	95	N	50000	contig	no	
S.lycopersicum-chr3	61904664	61970075	96	F	C03HBa0065A22.1	1	65412	+
S.lycopersicum-chr3	61970076	62020075	97	N	50000	contig	no	
S.lycopersicum-chr3	62020076	62124146	98	F	C03HBa0113K11.1	1	104071	+
S.lycopersicum-chr3	62124147	62174146	99	N	50000	contig	no	
S.lycopersicum-chr3	62174147	62279336	100	F	C03SLe0011K13.1	1	105190	+
S.lycopersicum-chr3	62279337	62329336	101	N	50000	contig	no	
S.lycopersicum-chr3	62329337	62451676	102	F	C03HBa0066J09.1	1	122340	+
S.lycopersicum-chr3	62451677	62501676	103	N	50000	contig	no	
S.lycopersicum-chr3	62501677	62610428	104	F	C03HBa0112C24.1	1	108752	+
S.lycopersicum-chr3	62610429	62660428	105	N	50000	contig	no	
S.lycopersicum-chr3	62660429	62772202	106	F	C03HBa0031O24.1	1	111774	+