#Draft Tomato chromosome 3
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr3	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr3	50001	171976	2	F	C03HBa0161O13.1	1	121976	+
S.lycopersicum-chr3	171977	221976	3	N	50000	contig	no	
S.lycopersicum-chr3	221977	279203	4	F	C03HBa0020P05.1	1	57227	+
S.lycopersicum-chr3	279204	3000000	5	N	2720797	contig	no	
S.lycopersicum-chr3	3000001	3110892	6	F	C03HBa0137K15.1	1	110892	+
S.lycopersicum-chr3	3110893	5900000	7	N	2789108	contig	no	
S.lycopersicum-chr3	5900001	6005794	8	F	C03HBa0030A11.1	1	105794	+
S.lycopersicum-chr3	6005795	7200000	9	N	1194206	contig	no	
S.lycopersicum-chr3	7200001	7334937	10	F	C03HBa0007J09.1	1	134937	+
S.lycopersicum-chr3	7334938	7384937	11	N	50000	contig	no	
S.lycopersicum-chr3	7384938	7470581	12	F	C03HBa0098B03.1	1	85644	+
S.lycopersicum-chr3	7470582	7520581	13	N	50000	contig	no	
S.lycopersicum-chr3	7520582	7642680	14	F	C03HBa0254B14.1	1	122099	+
S.lycopersicum-chr3	7642681	7692680	15	N	50000	contig	no	
S.lycopersicum-chr3	7692681	7819645	16	F	C03HBa0127K18.1	1	126965	+
S.lycopersicum-chr3	7819646	7869645	17	N	50000	contig	no	
S.lycopersicum-chr3	7869646	8014000	18	F	C03HBa0299H10.1	1	144355	+
S.lycopersicum-chr3	8014001	8064000	19	N	50000	contig	no	
S.lycopersicum-chr3	8064001	8178822	20	F	C03HBa0298P15.1	1	114822	+
S.lycopersicum-chr3	8178823	9200000	21	N	1021178	contig	no	
S.lycopersicum-chr3	9200001	9282956	22	F	C03HBa0040F22.1	1	82956	+
S.lycopersicum-chr3	9282957	9332956	23	N	50000	clone	yes	
S.lycopersicum-chr3	9332957	9466026	24	F	C03SLm0100M07.1	1	133070	+
S.lycopersicum-chr3	9466027	9600000	25	N	133974	contig	no	
S.lycopersicum-chr3	9600001	9765849	26	F	C03HBa0054O21.1	1	165849	+
S.lycopersicum-chr3	9765850	9815849	27	N	50000	contig	no	
S.lycopersicum-chr3	9815850	9837775	28	F	C03HBa0191E01.1	1	21926	+
S.lycopersicum-chr3	9837776	10425000	29	N	587225	contig	no	
S.lycopersicum-chr3	10425001	10506445	30	F	C03HBa0036B17.1	1	81445	+
S.lycopersicum-chr3	10506446	10556445	31	N	50000	clone	yes	
S.lycopersicum-chr3	10556446	10673428	32	F	C03HBa0203K13.1	1	116983	+
S.lycopersicum-chr3	10673429	10723428	33	N	50000	contig	no	
S.lycopersicum-chr3	10723429	10876197	34	F	C03HBa0291G05.1	1	152769	+
S.lycopersicum-chr3	10876198	10926197	35	N	50000	clone	yes	
S.lycopersicum-chr3	10926198	11043924	36	F	C03HBa0233O20.1	1	117727	-
S.lycopersicum-chr3	11043925	11158718	37	F	C03HBa0074E24.1	2323	117116	+
S.lycopersicum-chr3	11158719	11208718	38	N	50000	contig	no	
S.lycopersicum-chr3	11208719	11298821	39	F	C03HBa0054D24.1	1	90103	+
S.lycopersicum-chr3	11298822	11348821	40	N	50000	contig	no	
S.lycopersicum-chr3	11348822	11463107	41	F	C03HBa0318C22.1	1	114286	+
S.lycopersicum-chr3	11463108	12300000	42	N	836893	contig	no	
S.lycopersicum-chr3	12300001	12402153	43	F	C03HBa0323D22.1	1	102153	+
S.lycopersicum-chr3	12402154	12800000	44	N	397847	contig	no	
S.lycopersicum-chr3	12800001	12910756	45	F	C03HBa0108K05.1	1	110756	+
S.lycopersicum-chr3	12910757	13300000	46	N	389244	contig	no	
S.lycopersicum-chr3	13300001	13356283	47	F	C03HBa0166B15.1	1	56283	+
S.lycopersicum-chr3	13356284	13406283	48	N	50000	clone	yes	
S.lycopersicum-chr3	13406284	13519964	49	F	C03HBa0012D06.1	1	113681	+
S.lycopersicum-chr3	13519965	13586827	50	F	C03SLe0090P17.1	36739	103601	-
S.lycopersicum-chr3	13586828	13700000	51	N	113173	contig	no	
S.lycopersicum-chr3	13700001	13826477	52	F	C03HBa0034B23.2	1	126477	+
S.lycopersicum-chr3	13826478	13876477	53	N	50000	clone	yes	
S.lycopersicum-chr3	13876478	14021185	54	F	C03HBa0035B17.1	1	144708	+
S.lycopersicum-chr3	14021186	14071185	55	N	50000	contig	no	
S.lycopersicum-chr3	14071186	14194501	56	F	C03HBa0033A22.1	1	123316	+
S.lycopersicum-chr3	14194502	14244501	57	N	50000	clone	yes	
S.lycopersicum-chr3	14244502	14346307	58	F	C03SLe0027H18.1	1	101806	+
S.lycopersicum-chr3	14346308	14396307	59	N	50000	contig	no	
S.lycopersicum-chr3	14396308	14541171	60	F	C03HBa0029M12.1	1	144864	+
S.lycopersicum-chr3	14541172	15700000	61	N	1158829	contig	no	
S.lycopersicum-chr3	15700001	15789551	62	F	C03HBa0043F15.1	1	89551	+
S.lycopersicum-chr3	15789552	16000000	63	N	210449	contig	no	
S.lycopersicum-chr3	16000001	16119102	64	F	C03HBa0001E24.1	1	119102	+
S.lycopersicum-chr3	16119103	16169102	65	N	50000	clone	yes	
S.lycopersicum-chr3	16169103	16241742	66	F	C03HBa0079K08.1	1	72640	+
S.lycopersicum-chr3	16241743	16400000	67	N	158258	contig	no	
S.lycopersicum-chr3	16400001	16431852	68	F	C03HBa0295I12.1	1	31852	+
S.lycopersicum-chr3	16431853	16700000	69	N	268148	contig	no	
S.lycopersicum-chr3	16700001	16855537	70	F	C03HBa0224P23.1	1	155537	+
S.lycopersicum-chr3	16855538	16905537	71	N	50000	contig	no	
S.lycopersicum-chr3	16905538	17096450	72	F	C03HBa0143N09.1	1	190913	+
S.lycopersicum-chr3	17096451	17146450	73	N	50000	contig	no	
S.lycopersicum-chr3	17146451	17266405	74	F	C03HBa0030O03.1	1	119955	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr3	17266406	60000000	75	N	42733595	contig	no	
S.lycopersicum-chr3	60000001	60120802	76	F	C03HBa0030F10.1	1	120802	+
S.lycopersicum-chr3	60120803	60170802	77	N	50000	contig	no	
S.lycopersicum-chr3	60170803	60318163	78	F	C03HBa0133B03.1	1	147361	+
S.lycopersicum-chr3	60318164	60368163	79	N	50000	contig	no	
S.lycopersicum-chr3	60368164	60375190	80	F	C03HBa0001G02.1	1	7027	+
S.lycopersicum-chr3	60375191	60425190	81	N	50000	contig	no	
S.lycopersicum-chr3	60425191	60433924	82	F	C03HBa0192B12.1	1	8734	+
S.lycopersicum-chr3	60433925	60483924	83	N	50000	contig	no	
S.lycopersicum-chr3	60483925	60509823	84	F	C03HBa0088L10.1	1	25899	+
S.lycopersicum-chr3	60509824	60559823	85	N	50000	contig	no	
S.lycopersicum-chr3	60559824	60690806	86	F	C03HBa0001E15.1	1	130983	+
S.lycopersicum-chr3	60690807	60740806	87	N	50000	contig	no	
S.lycopersicum-chr3	60740807	60904723	88	F	C03HBa0071P11.1	1	163917	+
S.lycopersicum-chr3	60904724	60954723	89	N	50000	contig	no	
S.lycopersicum-chr3	60954724	61045208	90	F	C03SLe0022L21.1	1	90485	+
S.lycopersicum-chr3	61045209	61095208	91	N	50000	contig	no	
S.lycopersicum-chr3	61095209	61237716	92	F	C03HBa0052G03.1	1	142508	+
S.lycopersicum-chr3	61237717	61287716	93	N	50000	contig	no	
S.lycopersicum-chr3	61287717	61422057	94	F	C03SLe0048E15.1	1	134341	+
S.lycopersicum-chr3	61422058	61472057	95	N	50000	contig	no	
S.lycopersicum-chr3	61472058	61531487	96	F	C03HBa0049I23.1	1	59430	+
S.lycopersicum-chr3	61531488	61581487	97	N	50000	contig	no	
S.lycopersicum-chr3	61581488	61687574	98	F	C03HBa0140L21.1	1	106087	+
S.lycopersicum-chr3	61687575	61737574	99	N	50000	contig	no	
S.lycopersicum-chr3	61737575	61865681	100	F	C03HBa0060B10.1	1	128107	+
S.lycopersicum-chr3	61865682	61915681	101	N	50000	contig	no	
S.lycopersicum-chr3	61915682	62066029	102	F	C03HBa0213E04.1	1	150348	+
S.lycopersicum-chr3	62066030	62116029	103	N	50000	contig	no	
S.lycopersicum-chr3	62116030	62179489	104	F	C03HBa0050K23.1	1	63460	+
S.lycopersicum-chr3	62179490	62229489	105	N	50000	contig	no	
S.lycopersicum-chr3	62229490	62356094	106	F	C03SLm0006J07.1	1	126605	+
S.lycopersicum-chr3	62356095	62406094	107	N	50000	contig	no	
S.lycopersicum-chr3	62406095	62471506	108	F	C03HBa0065A22.1	1	65412	+
S.lycopersicum-chr3	62471507	62521506	109	N	50000	contig	no	
S.lycopersicum-chr3	62521507	62625577	110	F	C03HBa0113K11.1	1	104071	+
S.lycopersicum-chr3	62625578	62675577	111	N	50000	contig	no	
S.lycopersicum-chr3	62675578	62780767	112	F	C03SLe0011K13.1	1	105190	+
S.lycopersicum-chr3	62780768	62830767	113	N	50000	contig	no	
S.lycopersicum-chr3	62830768	62953107	114	F	C03HBa0066J09.1	1	122340	+
S.lycopersicum-chr3	62953108	63003107	115	N	50000	contig	no	
S.lycopersicum-chr3	63003108	63111859	116	F	C03HBa0112C24.1	1	108752	+
S.lycopersicum-chr3	63111860	63161859	117	N	50000	contig	no	
S.lycopersicum-chr3	63161860	63300431	118	F	C03SLm0111H07.1	1	138572	+
S.lycopersicum-chr3	63300432	63350431	119	N	50000	contig	no	
S.lycopersicum-chr3	63350432	63462205	120	F	C03HBa0031O24.1	1	111774	+