#Draft Tomato chromosome 3
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr3	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr3	50001	171976	2	F	C03HBa0161O13.1	1	121976	+
S.lycopersicum-chr3	171977	221976	3	N	50000	contig	no	
S.lycopersicum-chr3	221977	279203	4	F	C03HBa0020P05.1	1	57227	+
S.lycopersicum-chr3	279204	3000000	5	N	2720797	contig	no	
S.lycopersicum-chr3	3000001	3110892	6	F	C03HBa0137K15.1	1	110892	+
S.lycopersicum-chr3	3110893	4800000	7	N	1689108	contig	no	
S.lycopersicum-chr3	4800001	4942622	8	F	C03HBa0257N18.1	1	142622	+
S.lycopersicum-chr3	4942623	5900000	9	N	957378	contig	no	
S.lycopersicum-chr3	5900001	6005794	10	F	C03HBa0030A11.1	1	105794	+
S.lycopersicum-chr3	6005795	7200000	11	N	1194206	contig	no	
S.lycopersicum-chr3	7200001	7334937	12	F	C03HBa0007J09.1	1	134937	+
S.lycopersicum-chr3	7334938	7384937	13	N	50000	contig	no	
S.lycopersicum-chr3	7384938	7470581	14	F	C03HBa0098B03.1	1	85644	+
S.lycopersicum-chr3	7470582	7520581	15	N	50000	contig	no	
S.lycopersicum-chr3	7520582	7642680	16	F	C03HBa0254B14.1	1	122099	+
S.lycopersicum-chr3	7642681	7692680	17	N	50000	contig	no	
S.lycopersicum-chr3	7692681	7819645	18	F	C03HBa0127K18.1	1	126965	+
S.lycopersicum-chr3	7819646	7869645	19	N	50000	contig	no	
S.lycopersicum-chr3	7869646	8014000	20	F	C03HBa0299H10.1	1	144355	+
S.lycopersicum-chr3	8014001	8064000	21	N	50000	contig	no	
S.lycopersicum-chr3	8064001	8178822	22	F	C03HBa0298P15.1	1	114822	+
S.lycopersicum-chr3	8178823	9200000	23	N	1021178	contig	no	
S.lycopersicum-chr3	9200001	9282956	24	F	C03HBa0040F22.1	1	82956	+
S.lycopersicum-chr3	9282957	9332956	25	N	50000	clone	yes	
S.lycopersicum-chr3	9332957	9466026	26	F	C03SLm0100M07.1	1	133070	+
S.lycopersicum-chr3	9466027	9600000	27	N	133974	contig	no	
S.lycopersicum-chr3	9600001	9621926	28	F	C03HBa0191E01.1	1	21926	+
S.lycopersicum-chr3	9621927	9671926	29	N	50000	contig	no	
S.lycopersicum-chr3	9671927	9837775	30	F	C03HBa0054O21.1	1	165849	+
S.lycopersicum-chr3	9837776	10425000	31	N	587225	contig	no	
S.lycopersicum-chr3	10425001	10506445	32	F	C03HBa0036B17.1	1	81445	+
S.lycopersicum-chr3	10506446	10556445	33	N	50000	clone	yes	
S.lycopersicum-chr3	10556446	10673428	34	F	C03HBa0203K13.1	1	116983	+
S.lycopersicum-chr3	10673429	10723428	35	N	50000	contig	no	
S.lycopersicum-chr3	10723429	10841155	36	F	C03HBa0233O20.1	1	117727	-
S.lycopersicum-chr3	10841156	10955949	37	F	C03HBa0074E24.1	2323	117116	+
S.lycopersicum-chr3	10955950	11005949	38	N	50000	clone	yes	
S.lycopersicum-chr3	11005950	11158718	39	F	C03HBa0291G05.1	1	152769	+
S.lycopersicum-chr3	11158719	11208718	40	N	50000	contig	no	
S.lycopersicum-chr3	11208719	11298821	41	F	C03HBa0054D24.1	1	90103	+
S.lycopersicum-chr3	11298822	11348821	42	N	50000	contig	no	
S.lycopersicum-chr3	11348822	11463107	43	F	C03HBa0318C22.1	1	114286	+
S.lycopersicum-chr3	11463108	12300000	44	N	836893	contig	no	
S.lycopersicum-chr3	12300001	12402153	45	F	C03HBa0323D22.1	1	102153	+
S.lycopersicum-chr3	12402154	12800000	46	N	397847	contig	no	
S.lycopersicum-chr3	12800001	12910756	47	F	C03HBa0108K05.1	1	110756	+
S.lycopersicum-chr3	12910757	13433333	48	N	522577	contig	no	
S.lycopersicum-chr3	13433334	13559810	49	F	C03HBa0034B23.2	1	126477	+
S.lycopersicum-chr3	13559811	13609810	50	N	50000	clone	yes	
S.lycopersicum-chr3	13609811	13723491	51	F	C03HBa0012D06.1	1	113681	+
S.lycopersicum-chr3	13723492	13790354	52	F	C03SLe0090P17.1	36739	103601	-
S.lycopersicum-chr3	13790355	13840354	53	N	50000	clone	yes	
S.lycopersicum-chr3	13840355	13896637	54	F	C03HBa0166B15.1	1	56283	+
S.lycopersicum-chr3	13896638	13976805	55	F	C03HBa0040M10.1	31634	111801	+
S.lycopersicum-chr3	13976806	14116259	56	F	C03HBa0035B17.1	5255	144708	-
S.lycopersicum-chr3	14116260	14166259	57	N	50000	contig	no	
S.lycopersicum-chr3	14166260	14289575	58	F	C03HBa0033A22.1	1	123316	+
S.lycopersicum-chr3	14289576	14339575	59	N	50000	clone	yes	
S.lycopersicum-chr3	14339576	14441381	60	F	C03SLe0027H18.1	1	101806	+
S.lycopersicum-chr3	14441382	14491381	61	N	50000	contig	no	
S.lycopersicum-chr3	14491382	14651100	62	F	C03HBa0203H10.1	1	159719	+
S.lycopersicum-chr3	14651101	14701100	63	N	50000	contig	no	
S.lycopersicum-chr3	14701101	14845964	64	F	C03HBa0029M12.1	1	144864	+
S.lycopersicum-chr3	14845965	15700000	65	N	854036	contig	no	
S.lycopersicum-chr3	15700001	15789551	66	F	C03HBa0043F15.1	1	89551	+
S.lycopersicum-chr3	15789552	16000000	67	N	210449	contig	no	
S.lycopersicum-chr3	16000001	16072640	68	F	C03HBa0079K08.1	1	72640	+
S.lycopersicum-chr3	16072641	16145474	69	F	C03HBa0241F16.1	60799	133632	+
S.lycopersicum-chr3	16145475	16153501	70	F	C03HBa0001E24.1	111076	119102	-
S.lycopersicum-chr3	16153502	16400000	71	N	246499	contig	no	
S.lycopersicum-chr3	16400001	16431852	72	F	C03HBa0295I12.1	1	31852	+
S.lycopersicum-chr3	16431853	16700000	73	N	268148	contig	no	
S.lycopersicum-chr3	16700001	16855537	74	F	C03HBa0224P23.1	1	155537	+
S.lycopersicum-chr3	16855538	16905537	75	N	50000	contig	no	
S.lycopersicum-chr3	16905538	17096450	76	F	C03HBa0143N09.1	1	190913	+
S.lycopersicum-chr3	17096451	17146450	77	N	50000	contig	no	
S.lycopersicum-chr3	17146451	17266405	78	F	C03HBa0030O03.1	1	119955	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr3	17266406	60000000	79	N	42733595	contig	no	
S.lycopersicum-chr3	60000001	60120802	80	F	C03HBa0030F10.1	1	120802	+
S.lycopersicum-chr3	60120803	60170802	81	N	50000	contig	no	
S.lycopersicum-chr3	60170803	60177829	82	F	C03HBa0001G02.1	1	7027	+
S.lycopersicum-chr3	60177830	60227829	83	N	50000	contig	no	
S.lycopersicum-chr3	60227830	60333916	84	F	C03HBa0140L21.1	1	106087	+
S.lycopersicum-chr3	60333917	60383916	85	N	50000	contig	no	
S.lycopersicum-chr3	60383917	60506256	86	F	C03HBa0066J09.1	1	122340	+
S.lycopersicum-chr3	60506257	60556256	87	N	50000	contig	no	
S.lycopersicum-chr3	60556257	60621668	88	F	C03HBa0065A22.1	1	65412	+
S.lycopersicum-chr3	60621669	60671668	89	N	50000	contig	no	
S.lycopersicum-chr3	60671669	60802651	90	F	C03HBa0001E15.1	1	130983	+
S.lycopersicum-chr3	60802652	60852651	91	N	50000	contig	no	
S.lycopersicum-chr3	60852652	61000012	92	F	C03HBa0133B03.1	1	147361	+
S.lycopersicum-chr3	61000013	61050012	93	N	50000	contig	no	
S.lycopersicum-chr3	61050013	61188584	94	F	C03SLm0111H07.1	1	138572	+
S.lycopersicum-chr3	61188585	61238584	95	N	50000	contig	no	
S.lycopersicum-chr3	61238585	61366691	96	F	C03HBa0060B10.1	1	128107	+
S.lycopersicum-chr3	61366692	61416691	97	N	50000	contig	no	
S.lycopersicum-chr3	61416692	61559199	98	F	C03HBa0052G03.1	1	142508	+
S.lycopersicum-chr3	61559200	61609199	99	N	50000	contig	no	
S.lycopersicum-chr3	61609200	61672659	100	F	C03HBa0050K23.1	1	63460	+
S.lycopersicum-chr3	61672660	61722659	101	N	50000	contig	no	
S.lycopersicum-chr3	61722660	61827849	102	F	C03SLe0011K13.1	1	105190	+
S.lycopersicum-chr3	61827850	61877849	103	N	50000	contig	no	
S.lycopersicum-chr3	61877850	61986601	104	F	C03HBa0112C24.1	1	108752	+
S.lycopersicum-chr3	61986602	62036601	105	N	50000	contig	no	
S.lycopersicum-chr3	62036602	62096031	106	F	C03HBa0049I23.1	1	59430	+
S.lycopersicum-chr3	62096032	62146031	107	N	50000	contig	no	
S.lycopersicum-chr3	62146032	62250102	108	F	C03HBa0113K11.1	1	104071	+
S.lycopersicum-chr3	62250103	62300102	109	N	50000	contig	no	
S.lycopersicum-chr3	62300103	62434443	110	F	C03SLe0048E15.1	1	134341	+
S.lycopersicum-chr3	62434444	62484443	111	N	50000	contig	no	
S.lycopersicum-chr3	62484444	62569179	112	F	C03HBa0049N20.1	1	84736	+
S.lycopersicum-chr3	62569180	62619179	113	N	50000	contig	no	
S.lycopersicum-chr3	62619180	62769527	114	F	C03HBa0213E04.1	1	150348	+
S.lycopersicum-chr3	62769528	62819527	115	N	50000	contig	no	
S.lycopersicum-chr3	62819528	62944343	116	F	C03HBa0054J16.1	1	124816	+
S.lycopersicum-chr3	62944344	62994343	117	N	50000	contig	no	
S.lycopersicum-chr3	62994344	63020242	118	F	C03HBa0088L10.1	1	25899	+
S.lycopersicum-chr3	63020243	63070242	119	N	50000	contig	no	
S.lycopersicum-chr3	63070243	63196847	120	F	C03SLm0006J07.1	1	126605	+
S.lycopersicum-chr3	63196848	63246847	121	N	50000	contig	no	
S.lycopersicum-chr3	63246848	63337332	122	F	C03SLe0022L21.1	1	90485	+
S.lycopersicum-chr3	63337333	63387332	123	N	50000	contig	no	
S.lycopersicum-chr3	63387333	63410754	124	F	C03HBa0169F12.1	1	23422	+
S.lycopersicum-chr3	63410755	63460754	125	N	50000	contig	no	
S.lycopersicum-chr3	63460755	63628492	126	F	C03HBa0067B15.1	1	167738	+
S.lycopersicum-chr3	63628493	63678492	127	N	50000	contig	no	
S.lycopersicum-chr3	63678493	63687226	128	F	C03HBa0192B12.1	1	8734	+
S.lycopersicum-chr3	63687227	63737226	129	N	50000	contig	no	
S.lycopersicum-chr3	63737227	63901143	130	F	C03HBa0071P11.1	1	163917	+
S.lycopersicum-chr3	63901144	63951143	131	N	50000	contig	no	
S.lycopersicum-chr3	63951144	64062917	132	F	C03HBa0031O24.1	1	111774	+