#Draft Tomato chromosome 3
#autogenerated-by SGN mummer/phrap AGP generator (bsub_assemble_bacs.pl)
S.lycopersicum-chr3	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr3	50001	171976	2	F	C03HBa0161O13.1	1	121976	+
S.lycopersicum-chr3	171977	221976	3	N	50000	contig	no	
S.lycopersicum-chr3	221977	279203	4	F	C03HBa0020P05.1	1	57227	+
S.lycopersicum-chr3	279204	460000	5	N	180797	contig	no	
S.lycopersicum-chr3	460001	572639	6	F	C03HBa0203C09.1	1	112639	+
S.lycopersicum-chr3	572640	3000000	7	N	2427361	contig	no	
S.lycopersicum-chr3	3000001	3110892	8	F	C03HBa0137K15.1	1	110892	+
S.lycopersicum-chr3	3110893	4800000	9	N	1689108	contig	no	
S.lycopersicum-chr3	4800001	4942622	10	F	C03HBa0257N18.1	1	142622	+
S.lycopersicum-chr3	4942623	5450000	11	N	507378	contig	no	
S.lycopersicum-chr3	5450001	5566402	12	F	C03HBa0176B05.1	1	116402	+
S.lycopersicum-chr3	5566403	5616402	13	N	50000	contig	no	
S.lycopersicum-chr3	5616403	5697805	14	F	C03HBa0041A13.1	1	81403	+
S.lycopersicum-chr3	5697806	5747805	15	N	50000	contig	no	
S.lycopersicum-chr3	5747806	5870713	16	F	C03HBa0114P24.1	1	122908	+
S.lycopersicum-chr3	5870714	5920713	17	N	50000	contig	no	
S.lycopersicum-chr3	5920714	6084437	18	F	C03HBa0031M05.1	1	163724	+
S.lycopersicum-chr3	6084438	6134437	19	N	50000	contig	no	
S.lycopersicum-chr3	6134438	6240231	20	F	C03HBa0030A11.1	1	105794	+
S.lycopersicum-chr3	6240232	7200000	21	N	959769	contig	no	
S.lycopersicum-chr3	7200001	7334937	22	F	C03HBa0007J09.1	1	134937	+
S.lycopersicum-chr3	7334938	7384937	23	N	50000	contig	no	
S.lycopersicum-chr3	7384938	7470581	24	F	C03HBa0098B03.1	1	85644	+
S.lycopersicum-chr3	7470582	7520581	25	N	50000	contig	no	
S.lycopersicum-chr3	7520582	7642680	26	F	C03HBa0254B14.1	1	122099	+
S.lycopersicum-chr3	7642681	7692680	27	N	50000	contig	no	
S.lycopersicum-chr3	7692681	7819645	28	F	C03HBa0127K18.1	1	126965	+
S.lycopersicum-chr3	7819646	7869645	29	N	50000	contig	no	
S.lycopersicum-chr3	7869646	8014000	30	F	C03HBa0299H10.1	1	144355	+
S.lycopersicum-chr3	8014001	8064000	31	N	50000	contig	no	
S.lycopersicum-chr3	8064001	8178822	32	F	C03HBa0298P15.1	1	114822	+
S.lycopersicum-chr3	8178823	8228822	33	N	50000	contig	no	
S.lycopersicum-chr3	8228823	8366258	34	F	C03HBa0031P17.1	1	137436	+
S.lycopersicum-chr3	8366259	9200000	35	N	833742	contig	no	
S.lycopersicum-chr3	9200001	9282956	36	F	C03HBa0040F22.1	1	82956	+
S.lycopersicum-chr3	9282957	9332956	37	N	50000	clone	yes	
S.lycopersicum-chr3	9332957	9466026	38	F	C03SLm0100M07.1	1	133070	+
S.lycopersicum-chr3	9466027	9516026	39	N	50000	contig	no	
S.lycopersicum-chr3	9516027	9674631	40	F	C03HBa0004C15.1	1	158605	+
S.lycopersicum-chr3	9674632	9724631	41	N	50000	contig	no	
S.lycopersicum-chr3	9724632	9746557	42	F	C03HBa0191E01.1	1	21926	+
S.lycopersicum-chr3	9746558	9796557	43	N	50000	contig	no	
S.lycopersicum-chr3	9796558	9962406	44	F	C03HBa0054O21.1	1	165849	+
S.lycopersicum-chr3	9962407	10425000	45	N	462594	contig	no	
S.lycopersicum-chr3	10425001	10506445	46	F	C03HBa0036B17.1	1	81445	+
S.lycopersicum-chr3	10506446	10556445	47	N	50000	clone	yes	
S.lycopersicum-chr3	10556446	10673428	48	F	C03HBa0203K13.1	1	116983	+
S.lycopersicum-chr3	10673429	10723428	49	N	50000	contig	no	
S.lycopersicum-chr3	10723429	10838833	50	F	C03HBa0233O20.1	2323	117727	-
S.lycopersicum-chr3	10838834	10955949	51	F	C03HBa0074E24.1	1	117116	+
S.lycopersicum-chr3	10955950	11005949	52	N	50000	clone	yes	
S.lycopersicum-chr3	11005950	11134101	53	F	C03HBa0291G05.1	1	128152	+
S.lycopersicum-chr3	11134102	11134174	54	F	C03HBa0051C24.1	105636	105708	+
S.lycopersicum-chr3	11134175	11158718	55	F	C03HBa0291G05.1	128226	152769	+
S.lycopersicum-chr3	11158719	11208718	56	N	50000	clone	yes	
S.lycopersicum-chr3	11208719	11294789	57	F	C03SLe0121J16.1	1	86071	+
S.lycopersicum-chr3	11294790	11344789	58	N	50000	contig	no	
S.lycopersicum-chr3	11344790	11434892	59	F	C03HBa0054D24.1	1	90103	+
S.lycopersicum-chr3	11434893	11484892	60	N	50000	contig	no	
S.lycopersicum-chr3	11484893	11675805	61	F	C03HBa0143N09.1	1	190913	+
S.lycopersicum-chr3	11675806	11725805	62	N	50000	clone	yes	
S.lycopersicum-chr3	11725806	11905366	63	F	C03HBa0270F24.1	1	179561	+
S.lycopersicum-chr3	11905367	11955366	64	N	50000	contig	no	
S.lycopersicum-chr3	11955367	12069652	65	F	C03HBa0318C22.1	1	114286	+
S.lycopersicum-chr3	12069653	12300000	66	N	230348	contig	no	
S.lycopersicum-chr3	12300001	12402153	67	F	C03HBa0323D22.1	1	102153	+
S.lycopersicum-chr3	12402154	12800000	68	N	397847	contig	no	
S.lycopersicum-chr3	12800001	12910756	69	F	C03HBa0108K05.1	1	110756	+
S.lycopersicum-chr3	12910757	13000000	70	N	89244	contig	no	
S.lycopersicum-chr3	13000001	13148709	71	F	C03HBa0031F10.1	1	148709	+
S.lycopersicum-chr3	13148710	13433333	72	N	284624	contig	no	
S.lycopersicum-chr3	13433334	13559810	73	F	C03HBa0034B23.2	1	126477	+
S.lycopersicum-chr3	13559811	13609810	74	N	50000	clone	yes	
S.lycopersicum-chr3	13609811	13723491	75	F	C03HBa0012D06.1	1	113681	+
S.lycopersicum-chr3	13723494	13790354	76	F	C03SLe0090P17.1	1	66861	-
S.lycopersicum-chr3	13790355	13840354	77	N	50000	clone	yes	
S.lycopersicum-chr3	13840355	13865004	78	F	C03HBa0166B15.1	1	24650	+
S.lycopersicum-chr3	13865005	13971551	79	F	C03HBa0040M10.1	1	106547	+
S.lycopersicum-chr3	13971552	14116259	80	F	C03HBa0035B17.1	1	144708	-
S.lycopersicum-chr3	14116260	14166259	81	N	50000	contig	no	
S.lycopersicum-chr3	14166260	14289575	82	F	C03HBa0033A22.1	1	123316	+
S.lycopersicum-chr3	14289576	14339575	83	N	50000	clone	yes	
S.lycopersicum-chr3	14339576	14441381	84	F	C03SLe0027H18.1	1	101806	+
S.lycopersicum-chr3	14441382	14491381	85	N	50000	contig	no	
S.lycopersicum-chr3	14491382	14651100	86	F	C03HBa0203H10.1	1	159719	+
S.lycopersicum-chr3	14651101	14701100	87	N	50000	contig	no	
S.lycopersicum-chr3	14701101	14845964	88	F	C03HBa0029M12.1	1	144864	+
S.lycopersicum-chr3	14845965	15700000	89	N	854036	contig	no	
S.lycopersicum-chr3	15700001	15789551	90	F	C03HBa0043F15.1	1	89551	+
S.lycopersicum-chr3	15789552	16000000	91	N	210449	contig	no	
S.lycopersicum-chr3	16000001	16011842	92	F	C03HBa0079K08.1	1	11842	+
S.lycopersicum-chr3	16011843	16034401	93	F	C03HBa0241F16.1	1	22559	+
S.lycopersicum-chr3	16034402	16153501	94	F	C03HBa0001E24.1	1	119100	-
S.lycopersicum-chr3	16153502	16450000	95	N	296499	contig	no	
S.lycopersicum-chr3	16450001	16590123	96	F	C03HBa0159C06.1	1	140123	+
S.lycopersicum-chr3	16590124	16640123	97	N	50000	clone	yes	
S.lycopersicum-chr3	16640124	16671975	98	F	C03HBa0295I12.1	1	31852	+
S.lycopersicum-chr3	16671976	16721975	99	N	50000	contig	no	
S.lycopersicum-chr3	16721976	16827862	100	F	C03HBa0121O11.1	1	105887	+
S.lycopersicum-chr3	16827863	16877862	101	N	50000	contig	no	
S.lycopersicum-chr3	16877863	17033399	102	F	C03HBa0224P23.1	1	155537	+
S.lycopersicum-chr3	17033400	17100000	103	N	66601	contig	no	
S.lycopersicum-chr3	17100001	17219955	104	F	C03HBa0030O03.1	1	119955	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr3	17219956	60000000	105	N	42780045	contig	no	
S.lycopersicum-chr3	60000001	60120802	106	F	C03HBa0030F10.1	1	120802	+
S.lycopersicum-chr3	60120803	60170802	107	N	50000	contig	no	
S.lycopersicum-chr3	60170803	60287372	108	F	C03HBa0157P11.1	1	116570	+
S.lycopersicum-chr3	60287373	60337372	109	N	50000	contig	no	
S.lycopersicum-chr3	60337373	60481661	110	F	C03HBa0046F15.1	1	144289	+
S.lycopersicum-chr3	60481662	60531661	111	N	50000	contig	no	
S.lycopersicum-chr3	60531662	60538688	112	F	C03HBa0001G02.1	1	7027	+
S.lycopersicum-chr3	60538689	60588688	113	N	50000	contig	no	
S.lycopersicum-chr3	60588689	60694775	114	F	C03HBa0140L21.1	1	106087	+
S.lycopersicum-chr3	60694776	60744775	115	N	50000	contig	no	
S.lycopersicum-chr3	60744776	60781235	116	F	C03HBa0141L10.1	1	36460	+
S.lycopersicum-chr3	60781236	60831235	117	N	50000	contig	no	
S.lycopersicum-chr3	60831236	60896647	118	F	C03HBa0065A22.1	1	65412	+
S.lycopersicum-chr3	60896648	60946647	119	N	50000	contig	no	
S.lycopersicum-chr3	60946648	61077630	120	F	C03HBa0001E15.1	1	130983	+
S.lycopersicum-chr3	61077631	61127630	121	N	50000	contig	no	
S.lycopersicum-chr3	61127631	61289249	122	F	C03HBa0013A17.1	1	161619	+
S.lycopersicum-chr3	61289250	61339249	123	N	50000	contig	no	
S.lycopersicum-chr3	61339250	61486610	124	F	C03HBa0133B03.1	1	147361	+
S.lycopersicum-chr3	61486611	61536610	125	N	50000	contig	no	
S.lycopersicum-chr3	61536611	61675182	126	F	C03SLm0111H07.1	1	138572	+
S.lycopersicum-chr3	61675183	61725182	127	N	50000	contig	no	
S.lycopersicum-chr3	61725183	61853289	128	F	C03HBa0060B10.1	1	128107	+
S.lycopersicum-chr3	61853290	61903289	129	N	50000	contig	no	
S.lycopersicum-chr3	61903290	62045797	130	F	C03HBa0052G03.1	1	142508	+
S.lycopersicum-chr3	62045798	62095797	131	N	50000	contig	no	
S.lycopersicum-chr3	62095798	62159257	132	F	C03HBa0050K23.1	1	63460	+
S.lycopersicum-chr3	62159258	62209257	133	N	50000	contig	no	
S.lycopersicum-chr3	62209258	62304415	134	F	C03SLe0111P12.1	1	95158	+
S.lycopersicum-chr3	62304416	62354415	135	N	50000	contig	no	
S.lycopersicum-chr3	62354416	62459605	136	F	C03SLe0011K13.1	1	105190	+
S.lycopersicum-chr3	62459606	62509605	137	N	50000	contig	no	
S.lycopersicum-chr3	62509606	62618357	138	F	C03HBa0112C24.1	1	108752	+
S.lycopersicum-chr3	62618358	62668357	139	N	50000	contig	no	
S.lycopersicum-chr3	62668358	62727787	140	F	C03HBa0049I23.1	1	59430	+
S.lycopersicum-chr3	62727788	62777787	141	N	50000	contig	no	
S.lycopersicum-chr3	62777788	62881858	142	F	C03HBa0113K11.1	1	104071	+
S.lycopersicum-chr3	62881859	62931858	143	N	50000	contig	no	
S.lycopersicum-chr3	62931859	63051666	144	F	C03HBa0198L06.1	1	119808	+
S.lycopersicum-chr3	63051667	63101666	145	N	50000	contig	no	
S.lycopersicum-chr3	63101667	63236007	146	F	C03SLe0048E15.1	1	134341	+
S.lycopersicum-chr3	63236008	63286007	147	N	50000	contig	no	
S.lycopersicum-chr3	63286008	63370743	148	F	C03HBa0049N20.1	1	84736	+
S.lycopersicum-chr3	63370744	63420743	149	N	50000	contig	no	
S.lycopersicum-chr3	63420744	63571091	150	F	C03HBa0213E04.1	1	150348	+
S.lycopersicum-chr3	63571092	63621091	151	N	50000	contig	no	
S.lycopersicum-chr3	63621092	63745907	152	F	C03HBa0054J16.1	1	124816	+
S.lycopersicum-chr3	63745908	63795907	153	N	50000	contig	no	
S.lycopersicum-chr3	63795908	63821806	154	F	C03HBa0088L10.1	1	25899	+
S.lycopersicum-chr3	63821807	63871806	155	N	50000	contig	no	
S.lycopersicum-chr3	63871807	63998411	156	F	C03SLm0006J07.1	1	126605	+
S.lycopersicum-chr3	63998412	64048411	157	N	50000	contig	no	
S.lycopersicum-chr3	64048412	64138896	158	F	C03SLe0022L21.1	1	90485	+
S.lycopersicum-chr3	64138897	64188896	159	N	50000	contig	no	
S.lycopersicum-chr3	64188897	64212318	160	F	C03HBa0169F12.1	1	23422	+
S.lycopersicum-chr3	64212319	64262318	161	N	50000	contig	no	
S.lycopersicum-chr3	64262319	64430056	162	F	C03HBa0067B15.1	1	167738	+
S.lycopersicum-chr3	64430057	64480056	163	N	50000	contig	no	
S.lycopersicum-chr3	64480057	64488790	164	F	C03HBa0192B12.1	1	8734	+
S.lycopersicum-chr3	64488791	64538790	165	N	50000	contig	no	
S.lycopersicum-chr3	64538791	64702707	166	F	C03HBa0071P11.1	1	163917	+
S.lycopersicum-chr3	64702708	64752707	167	N	50000	contig	no	
S.lycopersicum-chr3	64752708	64864481	168	F	C03HBa0031O24.1	1	111774	+
S.lycopersicum-chr3	64864482	64914481	169	N	50000	contig	no	
S.lycopersicum-chr3	64914482	65026691	170	F	C03HBa0025K18.1	1	112210	+
S.lycopersicum-chr3	65026692	65076691	171	N	50000	clone	yes	
S.lycopersicum-chr3	65076692	65220393	172	F	C03HBa0034A02.1	1	143702	+
S.lycopersicum-chr3	65220394	65270393	173	N	50000	clone	yes	
S.lycopersicum-chr3	65270394	65392733	174	F	C03HBa0066J09.1	1	122340	+