#Draft Tomato chromosome 3
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr3	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr3	50001	107227	2	F	C03HBa0020P05.1	1	57227	+
S.lycopersicum-chr3	107228	3000000	3	N	2892773	contig	no	
S.lycopersicum-chr3	3000001	3110892	4	F	C03HBa0137K15.1	1	110892	+
S.lycopersicum-chr3	3110893	5900000	5	N	2789108	contig	no	
S.lycopersicum-chr3	5900001	6005794	6	F	C03HBa0030A11.1	1	105794	+
S.lycopersicum-chr3	6005795	7200000	7	N	1194206	contig	no	
S.lycopersicum-chr3	7200001	7334937	8	F	C03HBa0007J09.1	1	134937	+
S.lycopersicum-chr3	7334938	7384937	9	N	50000	contig	no	
S.lycopersicum-chr3	7384938	7470581	10	F	C03HBa0098B03.1	1	85644	+
S.lycopersicum-chr3	7470582	7520581	11	N	50000	contig	no	
S.lycopersicum-chr3	7520582	7647546	12	F	C03HBa0127K18.1	1	126965	+
S.lycopersicum-chr3	7647547	9200000	13	N	1552454	contig	no	
S.lycopersicum-chr3	9200001	9282956	14	F	C03HBa0040F22.1	1	82956	+
S.lycopersicum-chr3	9282957	9332956	15	N	50000	clone	yes	
S.lycopersicum-chr3	9332957	9466026	16	F	C03SLm0100M07.1	1	133070	+
S.lycopersicum-chr3	9466027	9600000	17	N	133974	contig	no	
S.lycopersicum-chr3	9600001	9765849	18	F	C03HBa0054O21.1	1	165849	+
S.lycopersicum-chr3	9765850	9815849	19	N	50000	contig	no	
S.lycopersicum-chr3	9815850	9837775	20	F	C03HBa0191E01.1	1	21926	+
S.lycopersicum-chr3	9837776	10500000	21	N	662225	contig	no	
S.lycopersicum-chr3	10500001	10617727	22	F	C03HBa0233O20.1	1	117727	-
S.lycopersicum-chr3	10617728	10732521	23	F	C03HBa0074E24.1	2323	117116	+
S.lycopersicum-chr3	10732522	10782521	24	N	50000	contig	no	
S.lycopersicum-chr3	10782522	10863966	25	F	C03HBa0036B17.1	1	81445	+
S.lycopersicum-chr3	10863967	10913966	26	N	50000	contig	no	
S.lycopersicum-chr3	10913967	11004069	27	F	C03HBa0054D24.1	1	90103	+
S.lycopersicum-chr3	11004070	11054069	28	N	50000	contig	no	
S.lycopersicum-chr3	11054070	11168355	29	F	C03HBa0318C22.1	1	114286	+
S.lycopersicum-chr3	11168356	12300000	30	N	1131645	contig	no	
S.lycopersicum-chr3	12300001	12402153	31	F	C03HBa0323D22.1	1	102153	+
S.lycopersicum-chr3	12402154	12800000	32	N	397847	contig	no	
S.lycopersicum-chr3	12800001	12910756	33	F	C03HBa0108K05.1	1	110756	+
S.lycopersicum-chr3	12910757	13300000	34	N	389244	contig	no	
S.lycopersicum-chr3	13300001	13413681	35	F	C03HBa0012D06.1	1	113681	+
S.lycopersicum-chr3	13413682	13480544	36	F	C03SLe0090P17.1	36739	103601	-
S.lycopersicum-chr3	13480545	13700000	37	N	219456	contig	no	
S.lycopersicum-chr3	13700001	13826477	38	F	C03HBa0034B23.2	1	126477	+
S.lycopersicum-chr3	13826478	13876477	39	N	50000	clone	yes	
S.lycopersicum-chr3	13876478	14021185	40	F	C03HBa0035B17.1	1	144708	+
S.lycopersicum-chr3	14021186	14071185	41	N	50000	contig	no	
S.lycopersicum-chr3	14071186	14194501	42	F	C03HBa0033A22.1	1	123316	+
S.lycopersicum-chr3	14194502	14244501	43	N	50000	contig	no	
S.lycopersicum-chr3	14244502	14389365	44	F	C03HBa0029M12.1	1	144864	+
S.lycopersicum-chr3	14389366	15700000	45	N	1310635	contig	no	
S.lycopersicum-chr3	15700001	15789551	46	F	C03HBa0043F15.1	1	89551	+
S.lycopersicum-chr3	15789552	16000000	47	N	210449	contig	no	
S.lycopersicum-chr3	16000001	16119102	48	F	C03HBa0001E24.1	1	119102	+
S.lycopersicum-chr3	16119103	16169102	49	N	50000	clone	yes	
S.lycopersicum-chr3	16169103	16241742	50	F	C03HBa0079K08.1	1	72640	+
S.lycopersicum-chr3	16241743	16400000	51	N	158258	contig	no	
S.lycopersicum-chr3	16400001	16431852	52	F	C03HBa0295I12.1	1	31852	+
S.lycopersicum-chr3	16431853	16700000	53	N	268148	contig	no	
S.lycopersicum-chr3	16700001	16855537	54	F	C03HBa0224P23.1	1	155537	+
S.lycopersicum-chr3	16855538	16905537	55	N	50000	contig	no	
S.lycopersicum-chr3	16905538	17096450	56	F	C03HBa0143N09.1	1	190913	+
S.lycopersicum-chr3	17096451	17146450	57	N	50000	contig	no	
S.lycopersicum-chr3	17146451	17266405	58	F	C03HBa0030O03.1	1	119955	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr3	17266406	60000000	59	N	42733595	contig	no	
S.lycopersicum-chr3	60000001	60120802	60	F	C03HBa0030F10.1	1	120802	+
S.lycopersicum-chr3	60120803	60170802	61	N	50000	contig	no	
S.lycopersicum-chr3	60170803	60177829	62	F	C03HBa0001G02.1	1	7027	+
S.lycopersicum-chr3	60177830	60227829	63	N	50000	contig	no	
S.lycopersicum-chr3	60227830	60253728	64	F	C03HBa0088L10.1	1	25899	+
S.lycopersicum-chr3	60253729	60303728	65	N	50000	contig	no	
S.lycopersicum-chr3	60303729	60434711	66	F	C03HBa0001E15.1	1	130983	+
S.lycopersicum-chr3	60434712	60484711	67	N	50000	contig	no	
S.lycopersicum-chr3	60484712	60493445	68	F	C03HBa0192B12.1	1	8734	+
S.lycopersicum-chr3	60493446	60543445	69	N	50000	contig	no	
S.lycopersicum-chr3	60543446	60707362	70	F	C03HBa0071P11.1	1	163917	+
S.lycopersicum-chr3	60707363	60757362	71	N	50000	contig	no	
S.lycopersicum-chr3	60757363	60899870	72	F	C03HBa0052G03.1	1	142508	+
S.lycopersicum-chr3	60899871	60949870	73	N	50000	contig	no	
S.lycopersicum-chr3	60949871	61055957	74	F	C03HBa0140L21.1	1	106087	+
S.lycopersicum-chr3	61055958	61105957	75	N	50000	contig	no	
S.lycopersicum-chr3	61105958	61165387	76	F	C03HBa0049I23.1	1	59430	+
S.lycopersicum-chr3	61165388	61215387	77	N	50000	contig	no	
S.lycopersicum-chr3	61215388	61343494	78	F	C03HBa0060B10.1	1	128107	+
S.lycopersicum-chr3	61343495	61393494	79	N	50000	contig	no	
S.lycopersicum-chr3	61393495	61456954	80	F	C03HBa0050K23.1	1	63460	+
S.lycopersicum-chr3	61456955	61506954	81	N	50000	contig	no	
S.lycopersicum-chr3	61506955	61572366	82	F	C03HBa0065A22.1	1	65412	+
S.lycopersicum-chr3	61572367	61622366	83	N	50000	contig	no	
S.lycopersicum-chr3	61622367	61726437	84	F	C03HBa0113K11.1	1	104071	+
S.lycopersicum-chr3	61726438	61776437	85	N	50000	contig	no	
S.lycopersicum-chr3	61776438	61881627	86	F	C03SLe0011K13.1	1	105190	+
S.lycopersicum-chr3	61881628	61931627	87	N	50000	contig	no	
S.lycopersicum-chr3	61931628	62053967	88	F	C03HBa0066J09.1	1	122340	+
S.lycopersicum-chr3	62053968	62103967	89	N	50000	contig	no	
S.lycopersicum-chr3	62103968	62212719	90	F	C03HBa0112C24.1	1	108752	+
S.lycopersicum-chr3	62212720	62262719	91	N	50000	contig	no	
S.lycopersicum-chr3	62262720	62374493	92	F	C03HBa0031O24.1	1	111774	+