#Draft Tomato chromosome 9
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr9	1	1100000	1	N	1100000	contig	no	
S.lycopersicum-chr9	1100001	1251319	2	F	C09HBa0067J16.1	1	151319	+
S.lycopersicum-chr9	1251320	1301319	3	N	50000	clone	yes	
S.lycopersicum-chr9	1301320	1346688	4	F	C09HBa0072G22.3	1	45369	+
S.lycopersicum-chr9	1346689	1396688	5	N	50000	contig	no	
S.lycopersicum-chr9	1396689	1440724	6	F	C09SLe0019J03.3	1	44036	+
S.lycopersicum-chr9	1440725	1490724	7	N	50000	contig	no	
S.lycopersicum-chr9	1490725	1600596	8	F	C09HBa0116C14.2	1	109872	+
S.lycopersicum-chr9	1600597	2300000	9	N	699404	contig	no	
S.lycopersicum-chr9	2300001	2411868	10	F	C09HBa0203J14.1	1	111868	+
S.lycopersicum-chr9	2411869	3750000	11	N	1338132	contig	no	
S.lycopersicum-chr9	3750001	3866478	12	F	C09HBa0168F14.3	1	116478	+
S.lycopersicum-chr9	3866479	5560000	13	N	1693522	contig	no	
S.lycopersicum-chr9	5560001	5686955	14	F	C09SLm0094A22.1	1	126955	+
S.lycopersicum-chr9	5686956	6000000	15	N	313045	contig	no	
S.lycopersicum-chr9	6000001	6125286	16	F	C09HBa0099P03.2	1	125286	+
S.lycopersicum-chr9	6125287	10700000	17	N	4574714	contig	no	
S.lycopersicum-chr9	10700001	10811462	18	F	C09HBa0165P17.1	1	111462	+
S.lycopersicum-chr9	10811463	11050000	19	N	238538	contig	no	
S.lycopersicum-chr9	11050001	11164526	20	F	C09HBa0109D11.1	1	114526	+
S.lycopersicum-chr9	11164527	11187593	21	F	C09HBa0226D21.1	90515	113581	+
S.lycopersicum-chr9	11187594	11210653	22	F	C09SLf0060H24.1	16346	39405	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr9	11210654	60000000	23	N	48789347	contig	no	
S.lycopersicum-chr9	60000001	60057577	24	F	C09HBa0194K19.1	1	57577	+
S.lycopersicum-chr9	60057578	60107577	25	N	50000	contig	no	
S.lycopersicum-chr9	60107578	60198413	26	F	C09SLe0103M07.1	1	90836	+
S.lycopersicum-chr9	60198414	60248413	27	N	50000	contig	no	
S.lycopersicum-chr9	60248414	60349223	28	F	C09HBa0047I13.1	1	100810	+
S.lycopersicum-chr9	60349224	60399223	29	N	50000	contig	no	
S.lycopersicum-chr9	60399224	60499662	30	F	C09SLe0085A10.1	1	100439	+
S.lycopersicum-chr9	60499663	60549662	31	N	50000	contig	no	
S.lycopersicum-chr9	60549663	60620030	32	F	C09SLm0006M22.1	1	70368	+
S.lycopersicum-chr9	60620031	60670030	33	N	50000	contig	no	
S.lycopersicum-chr9	60670031	60772448	34	F	C09HBa0278J12.3	1	102418	+
S.lycopersicum-chr9	60772449	60822448	35	N	50000	contig	no	
S.lycopersicum-chr9	60822449	60931470	36	F	C09HBa0037P10.1	1	109022	+
S.lycopersicum-chr9	60931471	60981470	37	N	50000	contig	no	
S.lycopersicum-chr9	60981471	61112154	38	F	C09HBa0179M08.1	1	130684	+
S.lycopersicum-chr9	61112155	61162154	39	N	50000	contig	no	
S.lycopersicum-chr9	61162155	61196367	40	F	C09SLf0096M01.1	1	34213	+
S.lycopersicum-chr9	61196368	61246367	41	N	50000	contig	no	
S.lycopersicum-chr9	61246368	61287291	42	F	C09HBa0142I14.1	1	40924	+
S.lycopersicum-chr9	61287292	61337291	43	N	50000	contig	no	
S.lycopersicum-chr9	61337292	61466398	44	F	C09HBa0135N15.1	1	129107	+
S.lycopersicum-chr9	61466399	61516398	45	N	50000	contig	no	
S.lycopersicum-chr9	61516399	61635383	46	F	C09HBa0166O16.1	1	118985	-
S.lycopersicum-chr9	61635384	61727385	47	F	C09HBa0043M08.1	29738	121739	+
S.lycopersicum-chr9	61727386	61777385	48	N	50000	contig	no	
S.lycopersicum-chr9	61777386	61902641	49	F	C09SLe0066M20.2	1	125256	-
S.lycopersicum-chr9	61902642	62003497	50	F	C09HBa0130D14.1	3000	103855	+
S.lycopersicum-chr9	62003498	62053497	51	N	50000	contig	no	
S.lycopersicum-chr9	62053498	62155871	52	F	C09HBa0080D01.1	1	102374	+
S.lycopersicum-chr9	62155872	62269617	53	F	C09HBa0170H21.1	14707	128452	-