#Draft Tomato chromosome 9
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr9	1	1100000	1	N	1100000	contig	no	
S.lycopersicum-chr9	1100001	1251319	2	F	C09HBa0067J16.1	1	151319	+
S.lycopersicum-chr9	1251320	1301319	3	N	50000	clone	yes	
S.lycopersicum-chr9	1301320	1346688	4	F	C09HBa0072G22.3	1	45369	+
S.lycopersicum-chr9	1346689	1396688	5	N	50000	contig	no	
S.lycopersicum-chr9	1396689	1440724	6	F	C09SLe0019J03.3	1	44036	+
S.lycopersicum-chr9	1440725	1490724	7	N	50000	contig	no	
S.lycopersicum-chr9	1490725	1600596	8	F	C09HBa0116C14.2	1	109872	+
S.lycopersicum-chr9	1600597	2300000	9	N	699404	contig	no	
S.lycopersicum-chr9	2300001	2411868	10	F	C09HBa0203J14.1	1	111868	+
S.lycopersicum-chr9	2411869	3750000	11	N	1338132	contig	no	
S.lycopersicum-chr9	3750001	3866478	12	F	C09HBa0168F14.3	1	116478	+
S.lycopersicum-chr9	3866479	5560000	13	N	1693522	contig	no	
S.lycopersicum-chr9	5560001	5686955	14	F	C09SLm0094A22.1	1	126955	+
S.lycopersicum-chr9	5686956	6000000	15	N	313045	contig	no	
S.lycopersicum-chr9	6000001	6125286	16	F	C09HBa0099P03.2	1	125286	+
S.lycopersicum-chr9	6125287	6160391	17	F	C09SLf0022C03.1	6883	41987	-
S.lycopersicum-chr9	6160392	10700000	18	N	4539609	contig	no	
S.lycopersicum-chr9	10700001	10811462	19	F	C09HBa0165P17.1	1	111462	+
S.lycopersicum-chr9	10811463	11050000	20	N	238538	contig	no	
S.lycopersicum-chr9	11050001	11164526	21	F	C09HBa0109D11.1	1	114526	+
S.lycopersicum-chr9	11164527	11187593	22	F	C09HBa0226D21.1	90515	113581	+
S.lycopersicum-chr9	11187594	11210653	23	F	C09SLf0060H24.1	16346	39405	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr9	11210654	60000000	24	N	48789347	contig	no	
S.lycopersicum-chr9	60000001	60035617	25	F	C09SLf0130J12.1	1	35617	+
S.lycopersicum-chr9	60035618	60085617	26	N	50000	contig	no	
S.lycopersicum-chr9	60085618	60119830	27	F	C09SLf0096M01.1	1	34213	+
S.lycopersicum-chr9	60119831	60169830	28	N	50000	contig	no	
S.lycopersicum-chr9	60169831	60227407	29	F	C09HBa0194K19.1	1	57577	+
S.lycopersicum-chr9	60227408	60277407	30	N	50000	contig	no	
S.lycopersicum-chr9	60277408	60313042	31	F	C09SLf0041H22.1	1	35635	+
S.lycopersicum-chr9	60313043	60363042	32	N	50000	contig	no	
S.lycopersicum-chr9	60363043	60453878	33	F	C09SLe0103M07.1	1	90836	+
S.lycopersicum-chr9	60453879	60503878	34	N	50000	contig	no	
S.lycopersicum-chr9	60503879	60604688	35	F	C09HBa0047I13.1	1	100810	+
S.lycopersicum-chr9	60604689	60654688	36	N	50000	contig	no	
S.lycopersicum-chr9	60654689	60755127	37	F	C09SLe0085A10.1	1	100439	+
S.lycopersicum-chr9	60755128	60805127	38	N	50000	contig	no	
S.lycopersicum-chr9	60805128	60875495	39	F	C09SLm0006M22.1	1	70368	+
S.lycopersicum-chr9	60875496	60925495	40	N	50000	contig	no	
S.lycopersicum-chr9	60925496	61027913	41	F	C09HBa0278J12.3	1	102418	+
S.lycopersicum-chr9	61027914	61077913	42	N	50000	contig	no	
S.lycopersicum-chr9	61077914	61186935	43	F	C09HBa0037P10.1	1	109022	+
S.lycopersicum-chr9	61186936	61236935	44	N	50000	contig	no	
S.lycopersicum-chr9	61236936	61367619	45	F	C09HBa0179M08.1	1	130684	+
S.lycopersicum-chr9	61367620	61417619	46	N	50000	contig	no	
S.lycopersicum-chr9	61417620	61453681	47	F	C09SLf0040K20.1	1	36062	+
S.lycopersicum-chr9	61453682	61503681	48	N	50000	contig	no	
S.lycopersicum-chr9	61503682	61544605	49	F	C09HBa0142I14.1	1	40924	+
S.lycopersicum-chr9	61544606	61594605	50	N	50000	contig	no	
S.lycopersicum-chr9	61594606	61723712	51	F	C09HBa0135N15.1	1	129107	+
S.lycopersicum-chr9	61723713	61773712	52	N	50000	contig	no	
S.lycopersicum-chr9	61773713	61892697	53	F	C09HBa0166O16.1	1	118985	-
S.lycopersicum-chr9	61892698	61984699	54	F	C09HBa0043M08.1	29738	121739	+
S.lycopersicum-chr9	61984700	62034699	55	N	50000	contig	no	
S.lycopersicum-chr9	62034700	62159955	56	F	C09SLe0066M20.2	1	125256	-
S.lycopersicum-chr9	62159956	62260811	57	F	C09HBa0130D14.1	3000	103855	+
S.lycopersicum-chr9	62260812	62310811	58	N	50000	contig	no	
S.lycopersicum-chr9	62310812	62413185	59	F	C09HBa0080D01.1	1	102374	+
S.lycopersicum-chr9	62413186	62526931	60	F	C09HBa0170H21.1	14707	128452	-