#Draft Tomato chromosome 9 #autogenerated-by SGN mummer/phrap AGP generator (bsub_assemble_bacs.pl) S.lycopersicum-chr9 1 50000 1 N 50000 contig no S.lycopersicum-chr9 50001 161899 2 F C09HBa0026I24.3 1 111899 + S.lycopersicum-chr9 161900 211899 3 N 50000 clone yes S.lycopersicum-chr9 211900 284956 4 F C09SLe0060E05.2 1 73057 + S.lycopersicum-chr9 284957 334956 5 N 50000 contig no S.lycopersicum-chr9 334957 335656 6 F C09SLm0126G09.1 93841 94540 - S.lycopersicum-chr9 335657 350364 7 F C09HBa0113I06.1 1 14708 + S.lycopersicum-chr9 350365 395746 8 F C09SLm0126G09.1 33751 79132 - S.lycopersicum-chr9 395747 483284 9 F C09HBa0157E03.1 6298 93835 + S.lycopersicum-chr9 483285 1100000 10 N 616716 contig no S.lycopersicum-chr9 1100001 1251319 11 F C09HBa0067J16.1 1 151319 + S.lycopersicum-chr9 1251320 1301319 12 N 50000 clone yes S.lycopersicum-chr9 1301320 1343842 13 F C09HBa0072G22.3 1 42523 + S.lycopersicum-chr9 1343851 1483658 14 F C09SLe0068C01.2 1 139808 - S.lycopersicum-chr9 1483659 1533658 15 N 50000 contig no S.lycopersicum-chr9 1533659 1577694 16 F C09SLe0019J03.3 1 44036 + S.lycopersicum-chr9 1577695 1627694 17 N 50000 contig no S.lycopersicum-chr9 1627695 1692574 18 F C09SLe0130H12.3 16813 81692 - S.lycopersicum-chr9 1692575 1802446 19 F C09HBa0116C14.2 1 109872 + S.lycopersicum-chr9 1802447 2300000 20 N 497554 contig no S.lycopersicum-chr9 2300001 2402095 21 F C09HBa0203J14.1 1 102095 + S.lycopersicum-chr9 2402096 2410123 22 F C09SLe0004H20.2 1 8028 - S.lycopersicum-chr9 2410124 2411868 23 F C09HBa0203J14.1 110124 111868 + S.lycopersicum-chr9 2411869 3000000 24 N 588132 contig no S.lycopersicum-chr9 3000001 3105759 25 F C09HBa0100J12.1 1 105759 + S.lycopersicum-chr9 3105760 3300000 26 N 194241 contig no S.lycopersicum-chr9 3300001 3388227 27 F C09HBa0076D18.1 1 88227 + S.lycopersicum-chr9 3388228 3438227 28 N 50000 clone yes S.lycopersicum-chr9 3438228 3568158 29 F C09HBa0049F08.1 6885 136815 + S.lycopersicum-chr9 3568159 3679822 30 F C09SLm0018D02.2 16374 128037 - S.lycopersicum-chr9 3679823 3716253 31 F C09SLf0038P23.1 1 36431 + S.lycopersicum-chr9 3716254 3766253 32 N 50000 contig no S.lycopersicum-chr9 3766254 3856936 33 F C09SLm0129J22.1 1 90683 + S.lycopersicum-chr9 3856937 3906936 34 N 50000 contig no S.lycopersicum-chr9 3906937 4019910 35 F C09HBa0168F14.3 1 112974 + S.lycopersicum-chr9 4019911 4044698 36 F C09SLf0140E16.1 1 24788 - S.lycopersicum-chr9 4044699 4400000 37 N 355302 contig no S.lycopersicum-chr9 4400001 4513452 38 F C09HBa0317H24.1 1 113452 + S.lycopersicum-chr9 4513453 4563452 39 N 50000 contig no S.lycopersicum-chr9 4563453 4657542 40 F C09SLe0009I15.1 1 94090 + S.lycopersicum-chr9 4657543 4707542 41 N 50000 clone yes S.lycopersicum-chr9 4707543 4770067 42 F C09SLm0080E11.1 1 62525 + S.lycopersicum-chr9 4770068 4820067 43 N 50000 contig no S.lycopersicum-chr9 4820068 4942315 44 F C09HBa0300E15.2 1 122248 + S.lycopersicum-chr9 4942316 4992315 45 N 50000 clone yes S.lycopersicum-chr9 4992316 5072465 46 F C09SLe0103M07.1 1 80150 + S.lycopersicum-chr9 5072466 5201522 47 F C09HBa0026P14.1 1531 130587 + S.lycopersicum-chr9 5201523 5560000 48 N 358478 contig no S.lycopersicum-chr9 5560001 5686955 49 F C09SLm0094A22.1 1 126955 + S.lycopersicum-chr9 5686956 5736955 50 N 50000 contig no S.lycopersicum-chr9 5736956 5844812 51 F C09HBa0099F14.1 1 107857 + S.lycopersicum-chr9 5844813 6000000 52 N 155188 contig no S.lycopersicum-chr9 6000001 6118404 53 F C09HBa0099P03.2 1 118404 + S.lycopersicum-chr9 6118405 6160391 54 F C09SLf0022C03.1 1 41987 - S.lycopersicum-chr9 6160392 9000000 55 N 2839609 contig no S.lycopersicum-chr9 9000001 9132378 56 F C09HBa0102E23.2 1 132378 + S.lycopersicum-chr9 9132379 9700000 57 N 567622 contig no S.lycopersicum-chr9 9700001 9797284 58 F C09HBa0177O17.1 1 97284 + S.lycopersicum-chr9 9797285 9847284 59 N 50000 clone yes S.lycopersicum-chr9 9847285 9880173 60 F C09SLf0089D12.1 1 32889 + S.lycopersicum-chr9 9880174 9930173 61 N 50000 clone yes S.lycopersicum-chr9 9930174 10012757 62 F C09SLe0037E15.1 14 82597 - S.lycopersicum-chr9 10012758 10029064 63 F C09HBa0022M02.1 4755 21061 + S.lycopersicum-chr9 10029065 10700000 64 N 670936 contig no S.lycopersicum-chr9 10700001 10811462 65 F C09HBa0165P17.1 1 111462 + S.lycopersicum-chr9 10811463 11100000 66 N 288538 contig no S.lycopersicum-chr9 11100001 11213581 67 F C09HBa0226D21.1 1 113581 + S.lycopersicum-chr9 11213582 11263581 68 N 50000 clone yes S.lycopersicum-chr9 11263582 11351964 69 F C09SLm0037I08.2 1 88383 + S.lycopersicum-chr9 11351965 11401964 70 N 50000 clone yes S.lycopersicum-chr9 11401965 11401983 71 F C09HBa0059I05.3 16997 17015 - S.lycopersicum-chr9 11401985 11503145 72 F C09HBa0109D11.1 526 101686 + S.lycopersicum-chr9 11503146 11522707 73 F C09HBa0033H16.1 11715 31276 - S.lycopersicum-chr9 11522708 11562112 74 F C09SLf0060H24.1 1 39405 + S.lycopersicum-chr9 11562113 11612112 75 N 50000 clone yes S.lycopersicum-chr9 11612113 11703711 76 F C09SLm0017K18.2 1 91599 + # END OF DRAFT CHROMOSOME BUILD. THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP S.lycopersicum-chr9 11703712 60000000 77 N 48296289 contig no S.lycopersicum-chr9 60000001 60129938 78 F C09SLm0004H04.1 1 129938 + S.lycopersicum-chr9 60129939 60179938 79 N 50000 contig no S.lycopersicum-chr9 60179939 60214151 80 F C09SLf0096M01.1 1 34213 + S.lycopersicum-chr9 60214152 60264151 81 N 50000 contig no S.lycopersicum-chr9 60264152 60299786 82 F C09SLf0041H22.1 1 35635 + S.lycopersicum-chr9 60299787 60349786 83 N 50000 contig no S.lycopersicum-chr9 60349787 60407363 84 F C09HBa0194K19.1 1 57577 + S.lycopersicum-chr9 60407364 60457363 85 N 50000 contig no S.lycopersicum-chr9 60457364 60620991 86 F C09SLm0140D21.1 1 163628 + S.lycopersicum-chr9 60620992 60670991 87 N 50000 contig no S.lycopersicum-chr9 60670992 60837319 88 F C09SLm0104L22.2 1 166328 + S.lycopersicum-chr9 60837320 60887319 89 N 50000 contig no S.lycopersicum-chr9 60887320 60923381 90 F C09SLf0040K20.1 1 36062 + S.lycopersicum-chr9 60923382 60973381 91 N 50000 contig no S.lycopersicum-chr9 60973382 61065391 92 F C09SLe0004D19.3 1 92010 + S.lycopersicum-chr9 61065392 61115391 93 N 50000 contig no S.lycopersicum-chr9 61115392 61245943 94 F C09SLm0008K04.1 1 130552 + S.lycopersicum-chr9 61245944 61295943 95 N 50000 contig no S.lycopersicum-chr9 61295944 61396753 96 F C09HBa0047I13.1 1 100810 + S.lycopersicum-chr9 61396754 61446753 97 N 50000 contig no S.lycopersicum-chr9 61446754 61522632 98 F C09HBa0073M17.1 1 75879 + S.lycopersicum-chr9 61522633 61572632 99 N 50000 contig no S.lycopersicum-chr9 61572633 61669507 100 F C09SLm0058A04.1 1 96875 + S.lycopersicum-chr9 61669508 61719507 101 N 50000 contig no S.lycopersicum-chr9 61719508 61876069 102 F C09HBa0226J12.1 1 156562 + S.lycopersicum-chr9 61876070 61926069 103 N 50000 contig no S.lycopersicum-chr9 61926070 62013523 104 F C09SLe0014B18.1 1 87454 + S.lycopersicum-chr9 62013524 62063523 105 N 50000 contig no S.lycopersicum-chr9 62063524 62165048 106 F C09SLm0088K02.1 1 101525 + S.lycopersicum-chr9 62165049 62215048 107 N 50000 contig no S.lycopersicum-chr9 62215049 62255164 108 F C09HBa0191P09.1 1 40116 + S.lycopersicum-chr9 62255165 62305164 109 N 50000 contig no S.lycopersicum-chr9 62305165 62375532 110 F C09SLm0006M22.1 1 70368 + S.lycopersicum-chr9 62375533 62425532 111 N 50000 contig no S.lycopersicum-chr9 62425533 62562077 112 F C09HBa0026F17.1 1 136545 + S.lycopersicum-chr9 62562078 62612077 113 N 50000 contig no S.lycopersicum-chr9 62612078 62733513 114 F C09SLm0094P20.1 1 121436 + S.lycopersicum-chr9 62733514 62783513 115 N 50000 contig no S.lycopersicum-chr9 62783514 62836156 116 F C09SLm0018L06.1 1 52643 + S.lycopersicum-chr9 62836157 62886156 117 N 50000 contig no S.lycopersicum-chr9 62886157 63025524 118 F C09SLe0076N09.1 1 139368 + S.lycopersicum-chr9 63025525 63075524 119 N 50000 contig no S.lycopersicum-chr9 63075525 63100525 120 F C09SLe0001L13.1 1 25001 + S.lycopersicum-chr9 63100526 63150525 121 N 50000 contig no S.lycopersicum-chr9 63150526 63259547 122 F C09HBa0037P10.1 1 109022 + S.lycopersicum-chr9 63259548 63309547 123 N 50000 contig no S.lycopersicum-chr9 63309548 63345164 124 F C09SLf0130J12.1 1 35617 + S.lycopersicum-chr9 63345165 63395164 125 N 50000 contig no S.lycopersicum-chr9 63395165 63429126 126 F C09SLf0089I03.1 1 33962 + S.lycopersicum-chr9 63429127 63479126 127 N 50000 contig no S.lycopersicum-chr9 63479127 63592066 128 F C09HBa0074C08.1 1 112940 + S.lycopersicum-chr9 63592067 63642066 129 N 50000 contig no S.lycopersicum-chr9 63642067 63682990 130 F C09HBa0142I14.1 1 40924 + S.lycopersicum-chr9 63682991 63732990 131 N 50000 contig no S.lycopersicum-chr9 63732991 63836906 132 F C09SLe0017M14.2 1 103916 + S.lycopersicum-chr9 63836907 63886906 133 N 50000 contig no S.lycopersicum-chr9 63886907 63998249 134 F C09HBa0007I05.1 1 111343 + S.lycopersicum-chr9 63998250 64048249 135 N 50000 contig no S.lycopersicum-chr9 64048250 64177356 136 F C09HBa0135N15.1 1 129107 + S.lycopersicum-chr9 64177357 64227356 137 N 50000 contig no S.lycopersicum-chr9 64227357 64358711 138 F C09HBa0107D15.1 6871 138225 + S.lycopersicum-chr9 64358712 64408711 139 N 50000 clone yes S.lycopersicum-chr9 64408712 64528854 140 F C09SLm0013P16.1 1 120143 + S.lycopersicum-chr9 64528855 64578854 141 N 50000 contig no S.lycopersicum-chr9 64578855 64667676 142 F C09SLe0085A10.1 1 88822 + S.lycopersicum-chr9 64667677 64793499 143 F C09SLm0017L21.1 1 125823 - S.lycopersicum-chr9 64793500 64843499 144 N 50000 contig no S.lycopersicum-chr9 64843500 64971687 145 F C09HBa0038L16.1 1 128188 + S.lycopersicum-chr9 64971688 65021687 146 N 50000 clone yes S.lycopersicum-chr9 65021688 65124105 147 F C09HBa0278J12.3 1 102418 + S.lycopersicum-chr9 65124106 65174105 148 N 50000 contig no S.lycopersicum-chr9 65174106 65261773 149 F C09HBa0080D01.1 1 87668 + S.lycopersicum-chr9 65261774 65390225 150 F C09HBa0170H21.1 1 128452 - S.lycopersicum-chr9 65390226 65440225 151 N 50000 contig no S.lycopersicum-chr9 65440226 65558687 152 F C09HBa0036O20.1 1 118462 + S.lycopersicum-chr9 65558688 65608687 153 N 50000 clone yes S.lycopersicum-chr9 65608688 65739371 154 F C09HBa0179M08.1 1 130684 + S.lycopersicum-chr9 65739372 65789371 155 N 50000 contig no S.lycopersicum-chr9 65789372 65895987 156 F C09SLm0099J09.1 8785 115400 - S.lycopersicum-chr9 65895988 65914436 157 F C09HBa0176I09.1 1 18449 + S.lycopersicum-chr9 65914437 65964436 158 N 50000 contig no S.lycopersicum-chr9 65964437 66101355 159 F C09SLm0105D02.1 1 136919 + S.lycopersicum-chr9 66101356 66151355 160 N 50000 clone yes S.lycopersicum-chr9 66151356 66270340 161 F C09HBa0166O16.1 1 118985 - S.lycopersicum-chr9 66270341 66362342 162 F C09HBa0043M08.1 29738 121739 + S.lycopersicum-chr9 66362343 66412342 163 N 50000 contig no S.lycopersicum-chr9 66412343 66496595 164 F C09SLe0045A18.1 1 84253 + S.lycopersicum-chr9 66496596 66597451 165 F C09HBa0130D14.1 3000 103855 - S.lycopersicum-chr9 66597452 66722707 166 F C09SLe0066M20.2 1 125256 +