#Draft Tomato chromosome 9
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr9	1	1400000	1	N	1400000	contig	no	
S.lycopersicum-chr9	1400001	1509872	2	F	C09HBa0116C14.2	1	109872	+
S.lycopersicum-chr9	1509873	2300000	3	N	790128	contig	no	
S.lycopersicum-chr9	2300001	2411868	4	F	C09HBa0203J14.1	1	111868	+
S.lycopersicum-chr9	2411869	5560000	5	N	3148132	contig	no	
S.lycopersicum-chr9	5560001	5686955	6	F	C09SLm0094A22.1	1	126955	+
S.lycopersicum-chr9	5686956	6000000	7	N	313045	contig	no	
S.lycopersicum-chr9	6000001	6125286	8	F	C09HBa0099P03.2	1	125286	+
S.lycopersicum-chr9	6125287	10700000	9	N	4574714	contig	no	
S.lycopersicum-chr9	10700001	10811462	10	F	C09HBa0165P17.1	1	111462	+
S.lycopersicum-chr9	10811463	11050000	11	N	238538	contig	no	
S.lycopersicum-chr9	11050001	11164526	12	F	C09HBa0109D11.1	1	114526	+
S.lycopersicum-chr9	11164527	11187593	13	F	C09HBa0226D21.1	90515	113581	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr9	11187594	60000000	14	N	48812407	contig	no	
S.lycopersicum-chr9	60000001	60102374	15	F	C09HBa0080D01.1	1	102374	+
S.lycopersicum-chr9	60102375	60152374	16	N	50000	contig	no	
S.lycopersicum-chr9	60152375	60283058	17	F	C09HBa0179M08.1	1	130684	+
S.lycopersicum-chr9	60283059	60333058	18	N	50000	contig	no	
S.lycopersicum-chr9	60333059	60433868	19	F	C09HBa0047I13.1	1	100810	+
S.lycopersicum-chr9	60433869	60483868	20	N	50000	contig	no	
S.lycopersicum-chr9	60483869	60612975	21	F	C09HBa0135N15.1	1	129107	+
S.lycopersicum-chr9	60612976	60662975	22	N	50000	contig	no	
S.lycopersicum-chr9	60662976	60753811	23	F	C09SLe0103M07.1	1	90836	+
S.lycopersicum-chr9	60753812	60803811	24	N	50000	contig	no	
S.lycopersicum-chr9	60803812	60844735	25	F	C09HBa0142I14.1	1	40924	+