#Draft Tomato chromosome 9
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr9	1	1300000	1	N	1300000	contig	no	
S.lycopersicum-chr9	1300001	1344036	2	F	C09SLe0019J03.3	1	44036	+
S.lycopersicum-chr9	1344037	1400000	3	N	55964	contig	no	
S.lycopersicum-chr9	1400001	1509872	4	F	C09HBa0116C14.2	1	109872	+
S.lycopersicum-chr9	1509873	2300000	5	N	790128	contig	no	
S.lycopersicum-chr9	2300001	2411868	6	F	C09HBa0203J14.1	1	111868	+
S.lycopersicum-chr9	2411869	5560000	7	N	3148132	contig	no	
S.lycopersicum-chr9	5560001	5686955	8	F	C09SLm0094A22.1	1	126955	+
S.lycopersicum-chr9	5686956	6000000	9	N	313045	contig	no	
S.lycopersicum-chr9	6000001	6125286	10	F	C09HBa0099P03.2	1	125286	+
S.lycopersicum-chr9	6125287	10700000	11	N	4574714	contig	no	
S.lycopersicum-chr9	10700001	10811462	12	F	C09HBa0165P17.1	1	111462	+
S.lycopersicum-chr9	10811463	11050000	13	N	238538	contig	no	
S.lycopersicum-chr9	11050001	11164526	14	F	C09HBa0109D11.1	1	114526	+
S.lycopersicum-chr9	11164527	11187593	15	F	C09HBa0226D21.1	90515	113581	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr9	11187594	60000000	16	N	48812407	contig	no	
S.lycopersicum-chr9	60000001	60040924	17	F	C09HBa0142I14.1	1	40924	+
S.lycopersicum-chr9	60040925	60090924	18	N	50000	contig	no	
S.lycopersicum-chr9	60090925	60181760	19	F	C09SLe0103M07.1	1	90836	+
S.lycopersicum-chr9	60181761	60231760	20	N	50000	contig	no	
S.lycopersicum-chr9	60231761	60332570	21	F	C09HBa0047I13.1	1	100810	+
S.lycopersicum-chr9	60332571	60382570	22	N	50000	contig	no	
S.lycopersicum-chr9	60382571	60483009	23	F	C09SLe0085A10.1	1	100439	+
S.lycopersicum-chr9	60483010	60533009	24	N	50000	contig	no	
S.lycopersicum-chr9	60533010	60636864	25	F	C09HBa0130D14.1	1	103855	+
S.lycopersicum-chr9	60636865	60686864	26	N	50000	contig	no	
S.lycopersicum-chr9	60686865	60744441	27	F	C09HBa0194K19.1	1	57577	+
S.lycopersicum-chr9	60744442	60794441	28	N	50000	contig	no	
S.lycopersicum-chr9	60794442	60923548	29	F	C09HBa0135N15.1	1	129107	+
S.lycopersicum-chr9	60923549	60973548	30	N	50000	contig	no	
S.lycopersicum-chr9	60973549	61104232	31	F	C09HBa0179M08.1	1	130684	+
S.lycopersicum-chr9	61104233	61154232	32	N	50000	contig	no	
S.lycopersicum-chr9	61154233	61256606	33	F	C09HBa0080D01.1	1	102374	+
S.lycopersicum-chr9	61256607	61370352	34	F	C09HBa0170H21.1	14707	128452	-