#Draft Tomato chromosome 11
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr11	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr11	50001	181679	2	F	C11HBa0168B23.2	1	131679	+
S.lycopersicum-chr11	181680	300000	3	N	118321	contig	no	
S.lycopersicum-chr11	300001	466744	4	F	C11HBa0054I23.2	1	166744	+
S.lycopersicum-chr11	466745	1100000	5	N	633256	contig	no	
S.lycopersicum-chr11	1100001	1232613	6	F	C11HBa0143O06.1	1	132613	+
S.lycopersicum-chr11	1232614	1282613	7	N	50000	contig	no	
S.lycopersicum-chr11	1282614	1306155	8	F	C11HBa0096D22.2	1	23542	+
S.lycopersicum-chr11	1306156	2400000	9	N	1093845	contig	no	
S.lycopersicum-chr11	2400001	2552521	10	F	C11HBa0323C14.1	1	152521	+
S.lycopersicum-chr11	2552522	3200000	11	N	647479	contig	no	
S.lycopersicum-chr11	3200001	3304904	12	F	C11HBa0107K14.2	1	104904	+
S.lycopersicum-chr11	3304905	3900000	13	N	595096	contig	no	
S.lycopersicum-chr11	3900001	4057776	14	F	C11HBa0062I24.2	1	157776	+
S.lycopersicum-chr11	4057777	4500000	15	N	442224	contig	no	
S.lycopersicum-chr11	4500001	4587341	16	F	C11HBa0034I10.2	1	87341	+
S.lycopersicum-chr11	4587342	4637341	17	N	50000	contig	no	
S.lycopersicum-chr11	4637342	4755862	18	F	C11HBa0064J13.2	1	118521	+
S.lycopersicum-chr11	4755863	5100000	19	N	344138	contig	no	
S.lycopersicum-chr11	5100001	5237646	20	F	C11HBa0245M17.2	1	137646	+
S.lycopersicum-chr11	5237647	5350000	21	N	112354	contig	no	
S.lycopersicum-chr11	5350001	5467316	22	F	C11HBa0119D16.2	1	117316	+
S.lycopersicum-chr11	5467317	5517316	23	N	50000	contig	no	
S.lycopersicum-chr11	5517317	5639140	24	F	C11HBa0029C01.2	1	121824	+
S.lycopersicum-chr11	5639141	6100000	25	N	460860	contig	no	
S.lycopersicum-chr11	6100001	6228652	26	F	C11HBa0249E07.1	1	128652	+
S.lycopersicum-chr11	6228653	6500000	27	N	271348	contig	no	
S.lycopersicum-chr11	6500001	6630777	28	F	C11HBa0072I13.1	1	130777	+
S.lycopersicum-chr11	6630778	6700000	29	N	69223	contig	no	
S.lycopersicum-chr11	6700001	6818142	30	F	C11HBa0139J14.2	1	118142	+
S.lycopersicum-chr11	6818143	7400000	31	N	581858	contig	no	
S.lycopersicum-chr11	7400001	7544100	32	F	C11HBa0303G16.1	1	144100	+
S.lycopersicum-chr11	7544101	7700000	33	N	155900	contig	no	
S.lycopersicum-chr11	7700001	7808762	34	F	C11HBa0161D01.2	1	108762	+
S.lycopersicum-chr11	7808763	9100000	35	N	1291238	contig	no	
S.lycopersicum-chr11	9100001	9204753	36	F	C11HBa0089M02.2	1	104753	+
S.lycopersicum-chr11	9204754	9254753	37	N	50000	contig	no	
S.lycopersicum-chr11	9254754	9377664	38	F	C11HBa0190J03.1	1	122911	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr11	9377665	60000000	39	N	50622336	contig	no	
S.lycopersicum-chr11	60000001	60105178	40	F	C11SLe0053P22.1	1	105178	+
S.lycopersicum-chr11	60105179	60155178	41	N	50000	contig	no	
S.lycopersicum-chr11	60155179	60296394	42	F	C11HBa0323E19.1	1	141216	+
S.lycopersicum-chr11	60296395	60346394	43	N	50000	contig	no	
S.lycopersicum-chr11	60346395	60446860	44	F	C11SLm0052K14.1	1	100466	+