<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:02:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="13658" stop="14811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13958" g_stop="14511" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13958" e_stop="14511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGATGAGGATGGGGAGAATGAACAAGTGTAGAATGAGGAATTGCAACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGTGGCTCCCTGCATGGATGCCTAATTGTAAATAGGCATGTTTCCTTGTCTGACTATTGGGCCTATAAGGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAACGGTGCTGAATCTAAGGATGCCTACGATTTTTTGGTTGACCGTCAAGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTTACTTATCAGTTTCAAGGGAACACCAAAATGTGGTGGCGGTCACACGTTGAGTGTCAACCAACAGAGGCACCACCTATCACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="15896" stop="14966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15596" g_stop="15266" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15596" e_stop="15266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTTCCAGGCTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAATCCAAGTCATAACCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACTTTTTCAACTATCACAGACTCACCTATCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTTAATTAAGACCATTAGCAAATGAGGATGATACATAAGAAAATGTGGATCCTGGATCAAACAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="70028" stop="69042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69729" g_stop="69347" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69729" e_stop="69347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTTCAAAATACATCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGAAGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTTCCACATACGGACCGTCACAGGCACGACGGAGCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCA-TTTTTCGCTCAAAATCTCCGCATTTTGCTTTGGACAGATTTCCTGCAAAACAATGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAA-GGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577717" ref_strand="+" ref_description="SGN-E577717 [LE15CC06]">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75329" stop="73998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75029" g_stop="74298" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E577717" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75029" e_stop="74298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATAACTCTAGTACCTAGAAAATAGGAGAGAAATTTCTCAAAAGCAAAGACAACTGCGAGGAGTTCTTTCTCAAACACTGTGTAGTTCTTCTAGGCTTCATTTAGGTTTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCACACATTACCTCAAATGGACTATTCCAATCCGGAGATATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTAACGGAATACTTTAAGACAGGATTCATCAAAAC-AAATATACATTCTTTCTCCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGA-ATCTCTCCGATAAAAACCTGCATGCCTAAAAAAGCTTCTCACACCTTTAACAGAGATCGGCGGGGGAAGTCTCTCTATTACCCCAACTTTAGCTCGATCAACCTCTATGCCGTTTTCTGAAATGAAATGACCCAACACAATACCCTATTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTTAGATAAATTGGTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCGTCCATAAAAACCTCTATAATATCCTCCATCATGTCAGAAAATATGGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTCTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350708" ref_strand="+" ref_description="SGN-E350708 [cTOS-7-K22]">
      <seq>ggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaatctnaccgacccacccggctggaccttttcaaatctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="76024" stop="77238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76324" g_stop="76938" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E350708" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76324" e_stop="76938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGATTTACTGCTTTTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTACAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGACCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAACGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTTATGAAGACTAAGTAATCAAGTCG-CCCAATCGTGCCGCGCCATTAAATATGGCGCTTGTTGGGAGGCGACCCAATACTTATCGTCTTTTTAATAATGGTAGCA-TTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCAAGTGATGGATACAACGACGGACCGTTGCGAATGCAATGGACCGTCGTATGCATCCATCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCAGAGAACCATCGCGCGATTAATGAAATCTACCCGACCCGACCCAACTGGACCCTTTTTCAAAATCTGACC</genome_strand>
        <mrna_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCATTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGAT---AC-A---A------C-AA--C---GGACCGTCGTATGCATCCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAATCTNACCGACCC-ACCCGGCTGGA-CC-TTTTC-AAATCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="97006" stop="98325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97305" g_stop="98025" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97305" e_stop="98025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATCTAATTATGTAATTGTGATTATATATCCATGATGAAGTTATTGAATCCCAAAATCTTACAGAACCCTAATTTCTCTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGACATTGATGATGCCTTGGCAAGAAAAAAGGCTTGATGGATTGATAGAAGGAGATTGGGGGAACGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGACCGGGTGTCACGAACTGACATGTAGATTTAGGGGATCGGGTGTCACCAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATGTAGGGGATCGGATGTCACAAACCGACACATAGATTAAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGA-TTTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCC-AAATCTTGTAAAAACCTAATCTCT-TTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="97570" stop="98407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97870" g_stop="98107" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97870" e_stop="98107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGAGTCCTCGTGTGTGAACTTGATGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="97571" stop="117209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97871" g_stop="98345" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97871" e_stop="98345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGAGTCCTCGTGTGTGAACTTGATGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTTATTTTATGATATTACTT--TGTATATATTGATTTCTATTTTGAGTTGACC---GATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATACTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="98359" stop="99244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98659" g_stop="98944" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98659" e_stop="98944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCCTTCTTTCATTCTTTCTTTCTTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTCCGCAGATGGTTAGAACTAGAACAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAACGTCTGAGCCAGCCACTGGGGTTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="+" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="99344" stop="101350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99644" g_stop="99816" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99817" i_stop="100558" i_length="742">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.612" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100559" g_stop="101086" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99644" e_stop="99816"/>
          <exon e_start="100559" e_stop="101086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGATGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCAAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACGACATACTGTAGTTGGGGTCCACCTCAGACAGGCCAACACTTCTTTGAGAGACCTATGTTTGACTCTAGAGAGTATTATGGATGTGGGAGACTGGAAATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGTCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTCGTCACAAAAATGGCCGAGGTGATGGGAAAACTGGAGCCGCTACATCACAACATGGTAGGGGAAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATGCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTGTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACAATTATGTAGATTTGGTTATCTTAGGAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT-TT-TGT-TGTA-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101369" stop="100008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101069" g_stop="100308" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101069" e_stop="100308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACATAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACACACGGACCACCGAAACCGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCGTTTACTAACCATTTTCTTAGCATGAATAAAGGAGATGATACACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAAATCCCAAATTGCGGAGAAAGCCAAGTCATACCGAGGATTACATCAAAATCATCCATTCCTAAGATAACCAAATCTACATAATTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTACACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGCATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101369" stop="100109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101069" g_stop="100409" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101069" e_stop="100409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACATAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACACACGGACCACCGAAACCGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCGTTTACTAACCATTTTCTTAGCATGAATAAAGGAGATGATACACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAAATCCCAAATTGCGGAGAAAGCCAAGTCATACCGAGGATTACATCAAAATCATCCATTCCTAAGATAACCAAATCTACATAATTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTACACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101438" stop="100180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101138" g_stop="100480" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101138" e_stop="100480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACATAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACACACGGACCACCGAAACCGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCGTTTACTAACCATTTTCTTAGCATGAATAAAGGAGATGATACACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAAATCCCAAATTGCGGAGAAAGCCAAGTCATACCGAGGATTACATCAAAATCATCCATTCCTAAGATAACCAAATCTACATAATTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101888" stop="100609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101588" g_stop="100908" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101588" e_stop="100908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAG-AAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101959" stop="100646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101659" g_stop="100946" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101659" e_stop="100946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCAGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAG-AAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101959" stop="100763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101659" g_stop="101063" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101659" e_stop="101063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCAGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAG-AAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101959" stop="100833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101659" g_stop="101133" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101659" e_stop="101133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCAGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAG-AAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0242B17-qj4pl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0242B17.1" temp_strand="-" temp_description="C00HBa0242B17.1  AC232689.1 htgs_phase:1 submitted_to_sgn_as:gi|206597341|gb|AC232689.1| upload_account_name:france Solanum lycopersicum chromosome 0 clone C00HBa0242B17, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101888" stop="100929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101588" g_stop="101229" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0242B17.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0242B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101588" e_stop="101229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAG-AAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13958" PGL_stop="14511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13958" e_stop="14511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="13958" e_stop="14511" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13958" stop="14511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGATGAGGATGGGGAGAATGAACAAGTGTAGAATGAGGAATTGCAACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTGTGGCTCCCTGCATGGATGCCTAATTGTAAATAGGCATGTTTCCTTGTCTGACTATTGGGCCTATAAGGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAACGGTGCTGAATCTAAGGATGCCTACGATTTTTTGGTTGACCGTCAAGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTTGAGTTTGTTACTTATCAGTTTCAAGGGAACACCAAAATGTGGTGGCGGTCACACGTTGAGTGTCAACCAACAGAGGCACCACCTATCACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  K  R  G  *  G  W  G  E  *  T  S  V  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  L  H  G  C  L  I  V  N  R  H  V  S  L  S  D  Y  W  A  Y  K  D  K  *  S  A  *  T  F  *  *  V  L  E  I  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  R  F  F  G  *  P  S  R  A  T  T  Q  D  G  Y  S  R  M  V  W  C  *  V  C  Y  L  S  V  S  R  E  H  Q  N  V  V  A  V  T  R  *  V  S  T  N  R  G  T  T  Y  H  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  D  E  D  G  E  N  E  Q  V  *  N  E  E  L  Q  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  A  P  Q  A  L  E  V  Q  H  A  A  T  V  A  P  C  M  D  A  *  L  *  I  G  M  F  P  C  L  T  I  G  P  I  R  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  N  G  A  E  S  K  D  A  Y  D  F  L  V  D  R  Q  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  T  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  I  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  W  *  E  R  M  R  M  G  R  M  N  K  C  R  M  R  N  C  N  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  W  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  N  C  K  *  A  C  F  L  V  *  L  L  G  L  *  G  Q  M  I  S  M  N  F  L  V  S  S  *  N  *  N  L  Q  S  S  T  V  L  N  L  R  M  P  T  I  F  W  L  T  V  K  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  L  L  I  S  F  K  G  T  P  K  C  G  G  G  H  T  L  S  V  N  Q  Q  R  H  H  L  S  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14223" stop="14510"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGMFPCLTIGPIRTNDQHELFSKFLKLKPPVFNGAESKDAYDFLVDRQELLHKMGIVEWFGVEFVTYQFQGNTKMWWRSHVECQPTEAPPITWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15596" PGL_stop="15266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15596" e_stop="15266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="15596" e_stop="15266" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15596" stop="15266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTTCCAGGCTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAATCCAAGTCATAACCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACTTTTTCAACTATCACAGACTCACCTATCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTTAATTAAGACCATTAGCAAATGAGGATGATACATAAGAAAATGTGGATCCTGGATCAAACAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  F  Q  A  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  S  K  S  *  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  K  T  Y  I  L  F  Q  L  S  Q  T  H  L  S  E  *  K  H  E  *  A  C  Q  A  I  H  N  F  N  *  D  H  *  Q  M  R  M  I  H  K  K  M  W  I  L  D  Q  T  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  S  R  L  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  N  P  S  H  N  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  L  I  K  T  I  S  K  *  G  *  Y  I  R  K  C  G  S  W  I  K  Q  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  V  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  I  Q  V  I  T  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  I  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  *  L  R  P  L  A  N  E  D  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0242B17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="69729" PGL_stop="69347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69729" e_stop="69347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="69729" e_stop="69347" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69729" stop="69347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGTTTCAAAATACATCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGAAGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTTCCACATACGGACCGTCACAGGCACGACGGAGCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTTTGCTTTGGACAGATTTCCTGCAAAACAATGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAG</gDNA_template>
            <first_frame> L  V  S  K  Y  I  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  K  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  F  H  I  R  T  V  T  G  T  T  E  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  C  F  G  Q  I  S  C  K  T  M  R  N  L  Y  Q  N  *  H  K  K  G  F  W  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I   </first_frame>
            <second_frame>  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  S  T  Y  G  P  S  Q  A  R  R  S  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  H  F  A  L  D  R  F  P  A  K  Q  *  E  T  Y  I  K  I  S  T  K  R  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  </second_frame>
            <third_frame>   R  F  K  I  H  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  E  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  H  T  D  R  H  R  H  D  G  A  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  L  L  W  T  D  F  L  Q  N  N  E  K  L  I  S  K  L  A  Q  K  G  L  L  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69633" stop="69421"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVRLPHLPSAASLRFHIRTVTGTTERHKLRRWSLLHFSLKISAFCFGQISCKTMRNLYQN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69727" stop="69521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKIHQLLESGYWDHFSDLHEEPAGRTVIAMTDRHKLRNPTLGQTSPSSFSSFSTLPHTDRHRHDGAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="75029" PGL_stop="74298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75029" e_stop="74298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="75029" e_stop="74298" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75029" stop="74298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTATAACTCTAGTACCTAGAAAATAGGAGAGAAATTTCTCAAAAGCAAAGACAACTGCGAGGAGTTCTTTCTCAAACACTGTGTAGTTCTTCTAGGCTTCATTTAGGTTTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCACACATTACCTCAAATGGACTATTCCAATCCGGAGATATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTAACGGAATACTTTAAGACAGGATTCATCAAAACAAATATACATTCTTTCTCCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGAATCTCTCCGATAAAAACCTGCATGCCTAAAAAAGCTTCTCACACCTTTAACAGAGATCGGCGGGGGAAGTCTCTCTATTACCCCAACTTTAGCTCGATCAACCTCTATGCCGTTTTCTGAAATGAAATGACCCAACACAATACCCTATTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTTAGATAAATTGGTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCGTCCATAAAAACCTCTATAATATCCTCCATCATGTCAGAAAATATGGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGACATTCTTC</gDNA_template>
            <first_frame> H  Y  N  S  S  T  *  K  I  G  E  K  F  L  K  S  K  D  N  C  E  E  F  F  L  K  H  C  V  V  L  L  G  F  I  *  V  F  T  S  I  V  N  W  V  K  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  S  I  T  H  Y  L  K  W  T  I  P  I  R  R  Y  N  D  R  C  R  H  *  L  L  F  *  L  T  E  Y  F  K  T  G  F  I  K  T  N  I  H  S  F  S  S  N  L  H  N  G  C  A  I  F  E  K  S  L  N  L  S  D  K  N  L  H  A  *  K  S  F  S  H  L  *  Q  R  S  A  G  E  V  S  L  L  P  Q  L  *  L  D  Q  P  L  C  R  F  L  K  *  N  D  P  T  Q  Y  P  I  S  P  *  N  D  T  F  P  S  L  V  P  N  C  S  L  H  I  S  *  E  P  *  I  N  W  S  S  I  A  Q  M  N  H  Q  P  Q  K  N  R  P  *  K  P  L  *  Y  P  P  S  C  Q  K  I  W  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  T  T  F  F </first_frame>
            <second_frame>  T  I  T  L  V  P  R  K  *  E  R  N  F  S  K  A  K  T  T  A  R  S  S  F  S  N  T  V  *  F  F  *  A  S  F  R  F  L  L  A  *  *  I  G  *  R  I  L  F  L  L  C  P  N  T  T  P  R  A  T  P  L  A  S  H  I  T  S  N  G  L  F  Q  S  G  D  I  M  I  G  A  D  T  N  F  S  F  S  *  R  N  T  L  R  Q  D  S  S  K  Q  I  Y  I  L  S  P  V  I  C  T  M  G  V  Q  S  L  K  S  L  *  I  S  P  I  K  T  C  M  P  K  K  A  S  H  T  F  N  R  D  R  R  G  K  S  L  Y  Y  P  N  F  S  S  I  N  L  Y  A  V  F  *  N  E  M  T  Q  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  Q  I  A  V  F  T  S  L  K  N  L  R  *  I  G  Q  A  S  L  K  *  I  T  N  H  R  K  I  V  H  K  N  L  Y  N  I  L  H  H  V  R  K  Y  G  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  R  H  S   </second_frame>
            <third_frame>   L  *  L  *  Y  L  E  N  R  R  E  I  S  Q  K  Q  R  Q  L  R  G  V  L  S  Q  T  L  C  S  S  S  R  L  H  L  G  F  Y  *  H  S  K  L  G  E  G  F  C  F  F  S  V  P  I  L  H  Q  E  P  P  H  *  H  H  T  L  P  Q  M  D  Y  S  N  P  E  I  *  *  *  V  Q  T  L  T  S  L  L  A  N  G  I  L  *  D  R  I  H  Q  N  K  Y  T  F  F  L  Q  *  F  A  Q  W  V  C  N  L  *  K  V  F  E  S  L  R  *  K  P  A  C  L  K  K  L  L  T  P  L  T  E  I  G  G  G  S  L  S  I  T  P  T  L  A  R  S  T  S  M  P  F  S  E  M  K  *  P  N  T  I  P  Y  F  T  M  K  *  H  F  S  Q  F  S  T  K  L  Q  S  S  H  L  L  R  T  L  D  K  L  V  K  H  R  S  N  E  S  P  T  T  E  K  S  S  I  K  T  S  I  I  S  S  I  M  S  E  N  M  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  D  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0242B17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="76324" PGL_stop="76938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76324" e_stop="76938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="76324" e_stop="76938" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76324" stop="76938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGATTTACTGCTTTTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTACAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGACCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAACGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTTATGAAGACTAAGTAATCAAGTCGCCCAATCGTGCCGCGCCATTAAATATGGCGCTTGTTGGGAGGCGACCCAATACTTATCGTCTTTTTAATAATGGTAGCATTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCAAGTGATGGATACAACGACGGACCGTTGCGAATGCAATGGACCGTCGTATGCATCCATCACACCAGGTACGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCAGAGAACCATCGCGCGATTAATGAAATCTACCCGACCCGACCCAACTGGACCCTTTTTCAAAATCTGACC</gDNA_template>
            <first_frame> G  D  L  L  L  L  F  N  S  R  L  R  L  F  P  G  K  L  K  Y  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  P  V  E  L  E  T  K  E  G  V  R  F  N  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  E  V  I  E  A  Y  H  L  Y  E  D  *  V  I  K  S  P  N  R  A  A  P  L  N  M  A  L  V  G  R  R  P  N  T  Y  R  L  F  N  N  G  S  I  F  S  I  N  G  F  *  I  C  R  H  I  T  R  K  F  C  R  K  L  L  R  S  S  K  *  W  I  Q  R  R  T  V  A  N  A  M  D  R  R  M  H  P  S  H  Q  V  R  I  S  V  I  F  E  I  R  A  H  T  T  E  P  T  M  G  R  R  K  C  D  G  P  S  S  E  N  H  R  A  I  N  E  I  Y  P  T  R  P  N  W  T  L  F  Q  N  L  T </first_frame>
            <second_frame>  G  I  Y  C  F  Y  S  I  P  D  C  A  C  F  Q  A  N  S  S  T  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  D  Q  L  S  W  K  L  R  R  V  C  G  S  T  *  M  D  S  A  *  K  S  I  S  G  M  L  N  R  R  M  K  *  S  R  H  T  I  F  M  K  T  K  *  S  S  R  P  I  V  P  R  H  *  I  W  R  L  L  G  G  D  P  I  L  I  V  F  L  I  M  V  A  F  F  L  *  M  G  F  K  F  A  G  T  S  P  G  N  S  A  E  N  Y  S  A  V  A  S  D  G  Y  N  D  G  P  L  R  M  Q  W  T  V  V  C  I  H  H  T  R  Y  V  F  L  S  F  L  K  L  G  H  T  R  R  N  L  R  W  G  V  A  S  A  M  D  R  R  Q  R  T  I  A  R  L  M  K  S  T  R  P  D  P  T  G  P  F  F  K  I  *   </second_frame>
            <third_frame>   G  F  T  A  F  I  Q  F  Q  I  A  L  V  S  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  T  S  *  V  G  N  *  G  G  C  A  V  Q  R  E  W  T  A  H  K  N  L  S  R  A  C  *  I  G  E  *  S  D  R  G  I  P  S  L  *  R  L  S  N  Q  V  A  Q  S  C  R  A  I  K  Y  G  A  C  W  E  A  T  Q  Y  L  S  S  F  *  *  W  *  H  F  F  Y  K  W  V  L  N  L  Q  A  H  H  Q  E  I  L  Q  K  T  T  P  Q  *  Q  V  M  D  T  T  T  D  R  C  E  C  N  G  P  S  Y  A  S  I  T  P  G  T  Y  F  C  H  F  *  N  *  G  T  H  D  G  T  Y  D  G  A  S  Q  V  R  W  T  V  V  R  E  P  S  R  D  *  *  N  L  P  D  P  T  Q  L  D  P  F  S  K  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76658" stop="76936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGFKFAGTSPGNSAENYSAVASDGYNDGPLRMQWTVVCIHHTRYVFLSFLKLGHTRRNLRWGVASAMDRRQRTIARLMKSTRPDPTGPFFKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76324" stop="76554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDLLLLFNSRLRLFPGKLKYKWTGPYTVTQLFPHGPVELETKEGVRFNVNGQRIKIYLGHAESANEVIEAYHLYED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76726" stop="76938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIQRRTVANAMDRRMHPSHQVRISVIFEIRAHTTEPTMGRRKCDGPSSENHRAINEIYPTRPNWTLFQNLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="97305" PGL_stop="98345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97305" e_stop="98345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="97305" e_stop="98345" e_length="1041"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97305" stop="98025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97870" stop="98107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97871" stop="98345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATCTAATTATGTAATTGTGATTATATATCCATGATGAAGTTATTGAATCCCAAAATCTTACAGAACCCTAATTTCTCTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGACATTGATGATGCCTTGGCAAGAAAAAAGGCTTGATGGATTGATAGAAGGAGATTGGGGGAACGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGACCGGGTGTCACGAACTGACATGTAGATTTAGGGGATCGGGTGTCACCAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATGTAGGGGATCGGATGTCACAAACCGACACATAGATTAAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGATTTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGAGTCCTCGTGTGTGAACTTGATGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTTATTTTATGATATTACTTTGTATATATTGATTTCTATTTTGAGTTGACCGATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATACTTCTAGCTTGGACT</gDNA_template>
            <first_frame> E  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  I  *  L  C  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  I  L  Q  N  P  N  F  S  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  T  L  M  M  P  W  Q  E  K  R  L  D  G  L  I  E  G  D  W  G  N  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  M  *  I  *  G  I  G  C  H  Q  L  T  R  R  F  R  G  S  G  V  T  N  *  H  V  D  V  G  D  R  M  S  Q  T  D  T  *  I  K  G  I  G  C  H  E  P  T  R  R  F  R  G  S  D  F  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  R  M  N  I  I  P  K  *  V  *  Y  *  G  L  S  P  R  V  *  T  *  W  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  L  F  Y  D  I  T  L  Y  I  L  I  S  I  L  S  *  P  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  I  L  L  A  W  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  S  N  Y  V  I  V  I  I  Y  P  *  *  S  Y  *  I  P  K  S  Y  R  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  H  *  *  C  L  G  K  K  K  G  L  M  D  *  *  K  E  I  G  G  T  G  V  T  N  R  H  V  D  L  E  D  R  V  S  R  T  D  T  *  I  *  G  T  G  C  H  E  L  T  C  R  F  R  G  S  G  V  T  N  *  H  V  D  L  G  D  R  V  S  R  T  D  T  *  M  *  G  I  G  C  H  K  P  T  H  R  L  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  I  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  K  S  *  K  M  L  I  Y  S  I  E  *  T  *  F  P  N  E  Y  S  I  E  A  *  V  L  V  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  Y  F  M  I  L  L  C  I  Y  *  F  L  F  *  V  D  R  Y  L  L  S  T  R  V  L  Y  *  L  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  Y  F  *  L  G   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  L  I  M  *  L  *  L  Y  I  H  D  E  V  I  E  S  Q  N  L  T  E  P  *  F  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  D  I  D  D  A  L  A  R  K  K  A  *  W  I  D  R  R  R  L  G  E  R  V  S  R  T  D  T  *  I  *  R  I  G  C  H  E  P  T  R  R  F  R  G  P  G  V  T  N  *  H  V  D  L  G  D  R  V  S  P  T  D  T  *  I  *  G  I  G  C  H  E  L  T  R  R  C  R  G  S  D  V  T  N  R  H  I  D  *  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  F  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  I  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  I  V  L  R  L  E  S  S  C  V  N  L  M  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  F  I  L  *  Y  Y  F  V  Y  I  D  F  Y  F  E  L  T  D  I  Y  S  V  P  V  F  C  T  D  S  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  T  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0242B17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="98659" PGL_stop="98944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98659" e_stop="98944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="98659" e_stop="98944" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98659" stop="98944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCCTTCTTTCATTCTTTCTTTCTTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTCCGCAGATGGTTAGAACTAGAACAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAACGTCTGAGCCAGCCACTGGGGTTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  L  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  P  Q  M  V  R  T  R  T  T  T  A  P  T  P  T  P  A  R  Q  E  T  S  E  P  A  T  G  V  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  P  S  F  I  L  S  F  L  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  L  L  S  F  F  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  S  A  D  G  *  N  *  N  N  D  C  A  N  T  N  T  G  K  T  R  N  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98708" stop="98944"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFPSFILSFLLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRQDKKRLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="99644" PGL_stop="101086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99644" e_stop="99816"/>
            <exon e_start="100559" e_stop="101086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.612" e_score="0.948"/>
          <exon-only e_score="0.890"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="99644" e_stop="99816" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.612">
            <gDNA_intron_boundary i_start="99817" i_stop="100558" i_length="742"/>
          </intron>
          <exon e_serial="2" e_score="0.890">
            <gDNA_exon_boundary e_start="100559" e_stop="101086" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99644" stop="99816"/>
              <exon start="100559" stop="101086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATTCAGATATGCCACTCAACTTTGTTTTAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGCGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAG : GAATGGATGATTTTGATGTAATCCTCGGTATGACTTGGCTTTCTCCGCAATTTGGGATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGTGTATCATCTCCTTTATTCATGCTAAGAAAATGGTTAGTAAACGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCCTCGATTGAGTCGGTTTCGGTGGTCCGTGTGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTATGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGGTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  P  R  Y  D  L  A  F  S  A  I  W  D  F  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  V  Y  H  L  L  Y  S  C  *  E  N  G  *  *  T  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  L  D  *  V  G  F  G  G  P  C  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  M  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  G  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  F  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  A  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : G  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  G  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  C  I  I  S  F  I  H  A  K  K  M  V  S  K  R  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  V  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  L  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  V  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  S  D  M  P  L  N  F  V  L  V  H  K  S  G  F  V  V  L  *  R  R  *  G  Q  S  C  G  F  Q  P  Y  R  *  Q  L  R  Q  N  P  S  K  :  E  W  M  I  L  M  *  S  S  V  *  L  G  F  L  R  N  L  G  F  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  M  L  R  K  W  L  V  N  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  P  R  L  S  R  F  R  W  S  V  C  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  Y  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  R  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99645" stop="99816"/>
                    <exon start="100559" stop="101085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALFRYATQLCFSPQERIRRFVKALRSELRISALQVAATAKSFQGMDDFDVILGMTWLSPQFGILDCNAKTVTLAKPGTDPLVWEGDYTSNPVCIISFIHAKKMVSKRCLDFLAHLKDDTTQVPSIESVSVVRVFLDVFPADLPGMPPDRDIDLCIDLEPGTRPISIPPYRMAPAELREVKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="101659" PGL_stop="100308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101659" e_stop="100308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="101659" e_stop="100308" e_length="1352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101659" stop="100946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101659" stop="101063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101659" stop="101133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101588" stop="100908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101588" stop="101229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101138" stop="100480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101069" stop="100308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101069" stop="100409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCAGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATTTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACCACGTGCCCCATGAATGACACTGCATCTAGCCAAAACTCAGGCTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATTACAATGATATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTTTAAAAGCGGTCTTTGGCGCATCCGTTGCCTGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGAACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTACCTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACATAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACACACGGACCACCGAAACCGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCGTTTACTAACCATTTTCTTAGCATGAATAAAGGAGATGATACACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAAATCCCAAATTGCGGAGAAAGCCAAGTCATACCGAGGATTACATCAAAATCATCCATTCCTAAGATAACCAAATCTACATAATTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTACACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGCATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  V  V  V  A  S  *  P  N  K  A  P  Y  F  R  H  I  S  R  S  Y  P  I  L  Y  C  L  N  F  R  R  I  H  H  H  S  I  L  R  K  P  R  A  P  *  M  T  L  H  L  A  K  T  Q  A  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  L  Q  *  Y  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  R  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  N  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  P  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  I  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  R  V  L  G  *  C  H  P  *  D  V  P  R  N  L  N  T  V  Y  *  P  F  S  *  H  E  *  R  R  *  Y  T  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  K  S  Q  I  A  E  K  A  K  S  Y  R  G  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  N  C  F  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  H  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  H  Q  T  I  Q  K  P  C  I  H  K  P  E  D  Y  L  *  *  Q  H  Q   </first_frame>
            <second_frame>  N  P  L  T  N  R  W  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  N  H  V  P  H  E  *  H  C  I  *  P  K  L  R  L  K  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  Y  N  D  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  N  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  F  K  S  G  L  W  R  I  R  C  L  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  R  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  G  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  Y  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  *  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  H  T  D  H  R  N  R  L  N  R  G  Y  L  G  S  V  I  L  E  M  C  Q  E  I  *  T  P  F  T  N  H  F  L  S  M  N  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  N  P  K  L  R  R  K  P  S  H  T  E  D  Y  I  K  I  I  H  S  *  D  N  Q  I  Y  I  I  V  S  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  Y  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  S  I  K  Q  Y  R  S  H  A  F  T  N  Q  K  I  T  C  D  D  S  I  R  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  Q  T  H  *  *  V  L  P  N  S  L  L  S  Q  F  *  K  D  P  P  S  L  H  P  *  K  T  T  C  P  M  N  D  T  A  S  S  Q  N  S  G  L  K  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  M  I  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  T  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  A  S  V  A  C  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  E  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  T  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  H  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  T  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  S  K  H  R  L  L  T  I  F  L  A  *  I  K  E  M  I  H  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  P  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  P  K  I  T  K  S  T  *  L  F  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  T  P  L  A  N  E  E  D  T  *  E  N  V  D  P  A  S  N  N  T  E  A  M  H  S  Q  T  R  R  L  P  V  M  T  A  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101394" stop="101155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDYNDIQIWLKNPVHQTHERNRGIRKTKRHHYKFVMPIPGFKSGLWRIRCLYFQLMITGSQVNLREDTRTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100931" stop="100722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIHKSISLSGGIPGRSAGNTSRNTRTTETDSIEGTWVVSSLRCAKKSKHRLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0242B17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101462" stop="101265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITMISKYGLKIPFIKLMNATGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 173 chains have been computed
$ 
$ memory statistics:
$ 77408 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 4300 bytes was the average size of a spliced alignment
$ 14968 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1663 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 231 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:08:53
-->
