<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:47:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7908" ref_strand="+" ref_description="SGN-M7908 C2_At3g28050 [cosii_markers]">
      <seq>ttcaatgtaggaccttaggaataaaaaaaaagtgtaaaaaatttcatctttaattttccctataaaacttagctaaaaaaacagttgcttcaatttcaatgtaagcttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattctggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5261" stop="974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4961" g_stop="4497" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2500" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="883" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2307" g_stop="2149" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="884" r_stop="1042" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2043" g_stop="1892" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1194" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1809" g_stop="1275" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1195" r_stop="1729" r_length="535" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1730" polyA_stop="1743"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-M7908" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1730</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4961" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2500"/>
          <exon e_start="2307" e_stop="2149"/>
          <exon e_start="2043" e_stop="1892"/>
          <exon e_start="1809" e_stop="1275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</genome_strand>
        <mrna_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7577-2" ref_strand="+" ref_description="SGN-M7577-2 C2_At3g01360-2 [cosii_markers]">
      <seq>aagaaaggagtatatgagtcttggaaagtcaggtgagcagagaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacatggactcttcaaatggggtttgcttttttctccgatttgattgcacaaggatgctatttacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8618" stop="10010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8918" g_stop="9710" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-M7577-2" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7577-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8918" e_stop="9710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATC</genome_strand>
        <mrna_strand>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAGAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACATGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAAGGATGCTATTTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2935" ref_strand="-" ref_description="SGN-M2935 cLET-14-E21 [est_clones]">
      <seq>ctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagtaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="14786" stop="13706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14486" g_stop="14016" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-M2935" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2935" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14486" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</genome_strand>
        <mrna_strand>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7165" ref_strand="+" ref_description="SGN-M7165 C2_At2g04690 [cosii_markers]">
      <seq>aataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattatagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatggatagtcacatgaccattgcatgaacgcctttatgtatacaatctgctgacaagttcttttcaagtgaaggttgaaagtggttttggaatgtgaaaaaagggtatcaattttagtgatcaatgaaattcaactgtaaataggagatacttgtgaagctcattatcattcattcacttgtgcatttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68283" stop="72151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68583" g_stop="68812" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="266" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70211" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="468" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71224" g_stop="71302" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="547" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71393" g_stop="71510" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="665" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71511" i_stop="71660" i_length="150">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71661" g_stop="71851" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="856" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-M7165" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68583" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70211"/>
          <exon e_start="71224" e_stop="71302"/>
          <exon e_start="71393" e_stop="71510"/>
          <exon e_start="71661" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGTCATTCCTTACTTAACACACGATCCATACGCAGGGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</genome_strand>
        <mrna_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTATAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT......................................................................................................................................................GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1367" ref_strand="+" ref_description="SGN-M1367 T0147 [cos_markers]">
      <seq>aaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="82856" stop="80827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82556" g_stop="82358" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81119" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="485" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-M1367" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82556" e_stop="82358"/>
          <exon e_start="81407" e_stop="81119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATT</genome_strand>
        <mrna_strand>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7166" ref_strand="+" ref_description="SGN-M7166 C2_At2g04700 [cosii_markers]">
      <seq>ccgtttattaatttattttaattataatttttcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88370" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88670" g_stop="88990" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="556" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="617" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94102" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="1015" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1016" polyA_stop="1030"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-M7166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1015</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88670" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1565" ref_strand="+" ref_description="SGN-M1565 T0723 [cos_markers]">
      <seq>taacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88502" stop="89268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88802" g_stop="88968" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-M1565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88802" e_stop="88968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</genome_strand>
        <mrna_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7166-2" ref_strand="+" ref_description="SGN-M7166-2 C2_At2g04700-2 [cosii_markers]">
      <seq>acagaatcacatttttgactcaatcggaaagtaggagcgaaaaacgagataacgaagcaataacagccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggcgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccatgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacaatttctatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagttgtagatgaagagcaacaatcaaagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtcaatgagcttgggtgggtgaataccagagtgcaattatgctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88504" stop="94223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88804" g_stop="88990" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="297" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="480" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93937" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="715" r_length="235" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-M7166-2" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7166-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88804" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATC-CAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATA--ACAGTGCAATTATGCTAACT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTAGGAGCGAAAAACGAGATAACGAAGCAATAACAGCCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAG-C--CTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGCGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCATGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACAATTTCTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTTGTAGATGAAGAGCAACAATCAAAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTC-AATGAGCTTGGGTGGGTGAATACCAGAGTGCAATTATGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7909-2" ref_strand="-" ref_description="SGN-M7909-2 C2_At3g28210-2 [cosii_markers]">
      <seq>ggaacagaagcttatccagatttaggaaaacattgccaactatctgattgtcatcaactcgattttctcccttttacctgccattcctgtcaaaaggtattttgtgtggaacatagatcatgcaaatctcatgaatgcccaaaatccgactttaacagccgaatggttttggtttgcgaaatttgttctatgtccattgaaactaccggctgtcaggttgaagaccataaagcaatattacgaaaacacgaggaatctggggattgtgaccctaagaagaagaagaaacctgcctgccctgtgaagagatgcaaggggattttgaccttctccaacactagcacttgcaagacttgccggattcaagtttgcctcagacacaggtttcctgctgatcacgcctgtaaccgcacttcttcatcatcacagccgttggttaaggaagccaataacaagtttttgactgctttgcttgcaaggggtgggaatgattgtgggaataaaagtcgtgcctcatcctcacgccttgctaacccttctgttaaagcttgttgatcgtttcacagtgcattactgttcatttgtctattgtaattacattatttatgtacgaaaacattatttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101035" stop="99699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100735" g_stop="100640" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="99996" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="629" r_length="533" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-M7909-2" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7909-2" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100735" e_stop="100640"/>
          <exon e_start="100533" e_stop="99996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTT</genome_strand>
        <mrna_strand>GGAACAGAAGCTTATCCAGATTTAGGAAAACATTGCCAACTATCTGATTGTCATCAACTCGATTTTCTCCCTTTTACCTGCCATTCCTGTCAAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAATCTCATGAATGCCCAAAATCCGACTTTAACAGCCGAATGGTTTTGGTTTGCGAAATTTGTTCTATGTCCATTGAAACTACCGGCTGTCAGGTTGAAGACCATAAAGCAATATTACGAAAACACGAGGAATCTGGGGATTGTGACCCT---AAGAAGAAGAAGAAACCTGCCTGCCCTGTGAAGAGATGCAAGGGGATTTTGACCTTCTCCAACACTAGCACTTGCAAGACTTGCCGGATTCAAGTTTGCCTCAGACACAGGTTTCCTGCTGATCACGCCTGTAACCGCACTTCTTCATCATCACAGCCGTTGGTTAAGGAAGCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGGGTGGGAATGATTGTGGGAATAAAAGTCGTGCCTCATCCTCACGCCTTGCTAACCCTTCTGTTAAAGCTTGTTGATCGTTTCACAGTGCATTACTGTTCATTTGTCTATTGTAATTACATTA-TTTATGTACGAAAACATTATT-TATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2119" ref_strand="+" ref_description="SGN-M2119 T1595 [cos_markers]">
      <seq>tcaagctgacatagcaccactgatgtccactcttcttggtctgccatgtcctgtcaactcggttggcaatctgcctcttcagtacatgaatctgaacaaggcagaagaagttgaagctgtgctggccaatacgaagcaaatcctcaatcagttccttcgaaagtcacagttaaagcaatcgacctcattatacatcaagcctttcaagcccttggctagttattcatcactattgcgtgaaattgagcaactgatttctctcaaagagtatgaaactgcaatgaaattatctgaacagcttaggagcttggcacttcaaggacttcactatttccagacatatgattggctgatgctgatgactgtaatcactcttggctatgttggttggatgatctatgtgatactccatgtcttgcaatcttatacatccctacctgcaaatatttttagcaaggagcaagtgcctagtccaagaagtacagctaagatacatcttttaggagggttgttgatgggagtagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="125541" stop="122472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125241" g_stop="125217" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125216" i_stop="125113" i_length="104">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125112" g_stop="125038" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125037" i_stop="124887" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124820" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124819" i_stop="124439" i_length="381">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124438" g_stop="124116" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="490" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124115" i_stop="122808" i_length="1308">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122807" g_stop="122772" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="526" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-M2119" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125241" e_stop="125217"/>
          <exon e_start="125112" e_stop="125038"/>
          <exon e_start="124886" e_stop="124820"/>
          <exon e_start="124438" e_stop="124116"/>
          <exon e_start="122807" e_stop="122772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGACATAGCACCACTGATGGTCGATTACCTTGTCCTCTTCTGACAGTCCTATCTTTGAAGTGTCTTTCTATCATATCAACTTCGTCTAAAGTCTGACTCTGATATGATCTCTAAAAATTGCAGTCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAGGTAGCTGCATTACTATAAGTTCTCTGTCTATTTTGCACTGTACGACTGTGTGATGGATTGGGAGAGATATACTGGTTTGCTGGTTCTTTGGGGCTATTTTGTTCTTTGTATTGAGATAGAATGCAGGTCTTAAAATCACTTTTATGTCCAGGCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCACGTATCCTTCCCTATAACTTAGATTGTTTTTCACTTCTAATTTCATTCTGCCTCACTCATCTTACATGTTATTTCCTAATTTTCTTTTTGTTGCAATTCACAACTTTCAGAGTTTTAAATGTCAGTTAAGATAGAACCTTATTAAAAGAAAATGTCAGTCAAAATAGAAGTAACTGGTAGAACGATTTAAGTATAGCATATACCAGAATTAGGACAAGTTACCAATTATTAGACCAATAGAGGGGCAAAGTGATAAAATTAATTCCTGTGCTGTCATTCCAAACTGCTTCATCAATGTAACTGGGTTCTGGGGCTTGTCCTGTTTTCACATTCTAAATTGATTTTTGGTTTCATCTTTTGAGCATCCTTGACAAATATGTAGAGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAGGTACCTGTTTTGCTCTATATGCACGTGCTGTTGTGTATTTCTTTGTCTGTGTTGGTTAGAAGAGGGTTGTAAAGGGAAGGTTCAAAATAAATTATATGTCTGTTTGGTGTTGAAAGTGTGATAGATTAGTAGGAAAAAGGGAGGAGGAAATTGACATATAAAAGCATTTATGTATGAAAAGTACTCGTGTTGTGCAAGTTCAAGTAATTTTCTCTATTTATACTAAAACCAACAAAAATATCTTGACTGTTGATATATGATTTTAATTCGAGGCGGAGATATACAAAGGGTTGTCCCGTTGTTTTGCTACCTCTTTGAGATAGAGTACATCTAGTGACAAATATTGATATGCCAAAATTACACATGTTCCTAAATCATATAATCTATTTCATAGCTCCAGAAAGTTCAAAGGTGAGACCATAATCAGTTTATCTATGCATTGTAAGTGGGAGGAGCAGGTTTTCCACCAAAACTATAGAAAGTAAAGACTTACTAAGGAAAGAAATTGAAATGTAAGAGCAAAGTGGGAGTAATGACACCTGATGTTCATTTGGACATTAATTCTCTAGGTTTTTTTTCTTTCAACCCCCAAAGGTTTCTCCTTTCTTCTTTTTCTAAAATGTCCCATGAAAGTCATACCCATCTTGGAGACCATATTTGGTTATATTTTGTCTCTATTATGCCTGATCTCCAAAGCTATTGTATCTAGTGTTGTCAAAGGCACGCTAAAGCCTGATATGAGGCTCTAAACGTGTTGAGTGCTTCGCGTCACTTAGTATGTGCTTCACTGTCGTCATCAAGGTTTTAAGACATACAAACCTTGCCAATGAGTGGTTCTTGAAGAGACGGCACTAAAAAATTAATCTTTCAGTGTCTTTGTATGTTATATATGTTATTTGTGCTTATAATATTAGTCTTGGACTAAACATATGTAATTTTGTATCCATTTGCGTCTTTTTCATAAAAGCCACACTTTATTTGCGCTTTGCGCTTAAAGACCCAACAGACGTTAGAGTTATTTTTGTGTTTTTTGCTTTTCATAACACTGATGAATCAAGTGTTCATCTGGGACTTCTCATCAGGGAAATTCTTAAAAACTTATATTATCACGGTCCTCTATTGGCGTATTCATGCCTCTTCTTATTATACTATTTTGGCATTTAGAAATTGATGTTATTAGCACAAGTGTCTTCCTCCCATAAAAATAGATGGATATTCTTGACCGTCATTCGTAAGGTGATACTAGAAAGAATTGCTATCTGACCAATTGATTCCCATGTTCTTGCTTATATTCTTTTTCTATGGCAGATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</genome_strand>
        <mrna_strand>TCAAGCTGACATAGCACCACTGATG........................................................................................................TCCACTCTTCTTGGTCTGCCATGTCCTGTCAACTCGGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG.......................................................................................................................................................GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGCAATCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAATGAAATTATCTGAACAGCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTCCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTGATACTCCATGTCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGAGCAAGTGCCTAGTCCAAGAAGTACAGCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4961" PGL_stop="1275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4961" e_stop="4497"/>
            <exon e_start="4400" e_stop="4335"/>
            <exon e_start="3466" e_stop="3353"/>
            <exon e_start="2738" e_stop="2500"/>
            <exon e_start="2307" e_stop="2149"/>
            <exon e_start="2043" e_stop="1892"/>
            <exon e_start="1809" e_stop="1275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.704" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.847" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4961" e_stop="4497" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.704">
            <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4400" e_stop="4335" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3466" e_stop="3353" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="2738" e_stop="2500" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.847">
            <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2307" e_stop="2149" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.756">
            <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2043" e_stop="1892" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="1809" e_stop="1275" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4961" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2500"/>
              <exon start="2307" stop="2149"/>
              <exon start="2043" stop="1892"/>
              <exon start="1809" stop="1275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7908" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG : ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG : GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG : GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG : ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT : GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG : CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</gDNA_template>
            <first_frame> F  N  V  G  P  *  E  *  K  K  S  V  K  N  F  I  F  N  F  P  Y  K  T  *  L  K  K  Q  L  L  Q  F  Q  C  K  L  S  *  K  K  N  S  Y  F  N  P  G  P  *  H  I  V  F  I  E  H  T  H  S  Y  E  *  I  S  D  F  *  V  K  L  M  S  A  T  R  R  S  *  R  F  *  R  K  K  Q  R  K  N  G  K  Q  *  Q  R  D  N  F  L  Q  R  S  A  T  I  C  S  Y  G  D  Y  G  M  Y  K  C  W  I  K  Y  A  L  Q  S  C  Y  *  Q  R  H  E  *  S  C  L  C  C  L  *  L  W  S  C  G  S  S  A  S  S  F  S  F  L  L  H  Q  :  I  K  N  S  S  T  S  Q  L  L  D  S  C  Q  N  L  S  S  W  S  Y  R  :  V  Y  I  T  D  N  G  V  Y  R  H  Y  L  C  L  S  N  A  C  L  R  H  Q  Q  S  R  P  C  F  Y  F  R  L  G  C  H  F  Q  :  D  G  E  D  T  V  E  K  I  N  H  S  S  Q  S  V  G  H  G  G  V  H  S  W  S  H  S  *  *  L  C  T  K  A  Q  K  Y  *  C  L  P  Q  P  H  P  I  Y  Y  V  N  L  S  A  H  L  N  R  I  G  C  L  V  A  F  S  S  Q  L  N  I  F  *  S  Q  C  G  I  *  F  R :   H  G  L  *  R  C  I  Q  Q  K  *  R  *  F  S  S  T  T  *  L  L  A  S  *  L  L  L  *  D  F  Y  L  N  L  T  Q  T  N  G  *  L  N  R  I  S  H  W  P  P  S  S  A  L :   E  Y  W  V  H  P  *  I  I  Q  F  T  P  G  L  C  A  *  K  D  Q  Y  M  *  Q  C  L  N  H  C  P  S  R  L  Q  L  P  W  E  S  F  S  *  E  I  L  F  I  W  E   : A  S  L  E  Q  R  *  L  Q  L  D  S  I  R  *  C  G  E  R  Q  K  R  C  L  N  I  M  I  L  V  I  S  S  R  L  Q  I  K  S  S  P  C  Y  T  T  T  K  M  K  A  S  Q  T  S  E  P  L  V  *  K  Q  N  G  T  S  H  K  R  Q  E  K  L  H  H  L  L  *  T  K  N  E  Y  G  V  V  Q  E  E  T  I  C  R  Y  G  K  K  R  S  S  K  I  V  G  I  Y  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L   </first_frame>
            <second_frame>  S  M  *  D  L  R  N  K  K  K  V  *  K  I  S  S  L  I  F  P  I  K  L  S  *  K  N  S  C  F  N  F  N  V  S  L  A  E  K  K  T  V  T  L  I  L  D  H  N  I  S  Y  L  L  N  T  H  T  R  M  N  K  Y  Q  I  F  R  *  S  S  C  P  P  R  V  E  V  E  D  F  E  E  K  N  R  G  K  M  G  S  N  N  R  E  T  T  F  Y  K  E  V  L  P  F  A  A  M  V  T  M  E  C  I  N  V  G  L  N  T  L  Y  K  A  A  T  N  K  G  M  S  N  H  V  F  V  V  Y  S  Y  G  L  A  A  L  L  L  L  P  S  P  F  F  S  T  R :   S  R  I  L  P  P  L  N  C  S  I  L  A  K  I  F  L  L  G  V  I  G :   C  T  S  Q  I  M  G  Y  T  G  I  I  Y  A  S  P  T  L  A  S  A  I  S  N  L  V  P  A  F  T  F  V  L  A  V  I  F  R :   M  E  K  I  Q  L  K  R  S  T  T  R  A  K  V  L  G  T  V  V  S  I  A  G  A  I  R  S  N  S  V  Q  R  P  K  N  I  S  A  Y  H  S  H  T  Q  F  T  T  S  T  S  Q  L  I  S  I  E  L  D  A  W  W  P  F  P  H  N  *  I  F  F  S  P  N  V  V  Y  S  S   : D  M  D  Y  E  G  V  S  S  R  S  D  G  S  F  L  L  Q  L  N  C  *  H  P  S  C  Y  C  R  I  F  I  *  T  *  L  K  Q  M  D  N  *  T  G  Y  R  T  G  L  H  P  L  L   : W  N  I  G  F  I  L  K  *  Y  N  S  H  L  G  F  A  R  E  R  T  S  I  C  S  N  V  *  T  I  V  H  R  D  C  S  C  H  G  S  H  S  L  R  R  Y  S  L  F  G  K  :  H  R  W  S  N  G  N  C  N  W  I  L  Y  G  N  V  G  K  G  K  R  D  V  *  I  *  *  F  *  *  S  R  V  V  S  R  S  K  V  P  L  V  T  Q  L  Q  K  *  R  H  L  K  Q  V  N  H  *  F  E  S  R  M  G  R  H  T  K  G  R  K  N  Y  T  I  F  Y  E  P  K  T  S  M  G  L  Y  R  K  K  Q  Y  A  V  M  G  K  K  G  V  A  K  L  L  A  Y  I  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  </second_frame>
            <third_frame>   Q  C  R  T  L  G  I  K  K  K  C  K  K  F  H  L  *  F  S  L  *  N  L  A  K  K  T  V  A  S  I  S  M  *  A  *  L  K  K  K  Q  L  L  *  S  W  T  I  T  Y  R  I  Y  *  T  H  T  L  V  *  I  N  I  R  F  L  G  K  A  H  V  R  H  A  *  K  L  K  I  L  K  K  K  T  E  E  K  W  E  A  I  T  E  R  Q  L  F  T  K  K  C  Y  H  L  Q  L  W  *  L  W  N  V  *  M  L  D  *  I  R  F  T  K  L  L  L  T  K  A  *  V  I  M  S  L  L  F  I  V  M  V  L  R  L  F  C  F  F  L  L  L  S  S  P  P   : D  Q  E  F  F  H  L  S  I  A  R  F  L  P  K  S  F  F  L  E  L  S   : G  V  H  H  R  *  W  G  I  Q  A  L  S  M  P  L  Q  R  L  P  P  P  S  A  I  S  S  L  L  L  L  S  S  W  L  S  F  S   : G  W  R  R  Y  S  *  K  D  Q  P  L  E  P  K  C  W  A  R  W  C  P  *  L  E  P  F  V  V  T  L  Y  K  G  P  K  I  L  V  P  T  T  A  T  P  N  L  L  R  Q  P  L  S  S  S  Q  S  N  W  M  L  G  G  L  F  L  T  T  E  Y  F  L  V  P  M  W  Y  I  V  Q  :  T  W  I  M  K  V  Y  P  A  E  V  T  V  V  F  F  Y  N  L  T  V  S  I  L  A  A  I  V  G  F  L  S  E  P  D  S  N  K  W  I  I  K  P  D  I  A  L  A  S  I  L  C  S  :  G  I  L  G  S  S  L  N  N  T  I  H  T  W  A  L  R  V  K  G  P  V  Y  V  A  M  F  K  P  L  S  I  A  I  A  V  A  M  G  V  I  L  L  G  D  T  L  Y  L  G  S :   I  V  G  A  T  V  I  A  I  G  F  Y  T  V  M  W  G  K  A  K  E  M  S  E  Y  N  D  S  S  D  L  E  S  S  P  D  Q  K  F  P  L  L  H  N  Y  K  N  E  G  I  S  N  K  *  T  I  S  L  K  A  E  W  D  V  T  Q  K  A  G  K  I  T  P  S  F  M  N  Q  K  R  V  W  G  C  T  G  R  N  N  M  P  L  W  E  K  K  E  *  Q  N  C  W  H  I  Y  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4756" stop="4497"/>
                    <exon start="4400" stop="4335"/>
                    <exon start="3466" stop="3353"/>
                    <exon start="2738" stop="2534"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCPPRVEVEDFEEKNRGKMGSNNRETTFYKEVLPFAAMVTMECINVGLNTLYKAATNKGMSNHVFVVYSYGLAALLLLPSPFFSTRSRILPPLNCSILAKIFLLGVIGCTSQIMGYTGIIYASPTLASAISNLVPAFTFVLAVIFRMEKIQLKRSTTRAKVLGTVVSIAGAIRSNSVQRPKNISAYHSHTQFTTSTSQLISIELDAWWPFPHN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2670" stop="2500"/>
                    <exon start="2307" stop="2149"/>
                    <exon start="2043" stop="1892"/>
                    <exon start="1809" stop="1647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEPFVVTLYKGPKILVPTTATPNLLRQPLSSSQSNWMLGGLFLTTEYFLVPMWYIVQTWIMKVYPAEVTVVFFYNLTVSILAAIVGFLSEPDSNKWIIKPDIALASILCSGILGSSLNNTIHTWALRVKGPVYVAMFKPLSIAIAVAMGVILLGDTLYLGSIVGATVIAIGFYTVMWGKAKEMSEYNDSSDLESSPDQKFPLLHNYKNEGISNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1579" stop="1277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNEYGVVQEETICRYGKKRSSKIVGIYIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8918" PGL_stop="9710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8918" e_stop="9710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="8918" e_stop="9710" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8918" stop="9710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7577-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATC</gDNA_template>
            <first_frame> K  K  G  V  Y  E  S  W  K  V  R  *  A  E  N  *  A  *  I  G  R  H  S  L  A  R  S  T  K  L  L  Y  N  I  E  F  L  E  I  *  R  *  S  K  S  T  M  G  L  F  S  Y  T  V  A  G  G  G  F  I  L  I  G  A  W  E  S  L  V  S  S  S  G  A  L  K  N  S  S  P  S  S  T  T  Q  S  P  P  Q  N  P  S  T  D  K  H  E  Q  D  S  V  F  S  S  S  V  T  F  V  L  I  L  I  L  S  F  L  F  V  L  D  S  L  L  S  F  F  D  A  L  N  S  K  D  N  I  G  S  V  L  Q  L  Q  V  I  A  I  S  L  L  F  F  L  Y  S  V  L  G  L  M  T  R  L  K  S  S  F  H  L  P  S  P  I  L  N  L  L  C  L  F  A  F  A  E  E  F  L  L  F  Y  L  Q  R  K  D  P  S  G  V  E  N  R  Y  Y  N  L  L  L  V  P  I  A  I  C  A  F  C  S  F  L  E  L  K  N  P  K  S  N  Y  T  R  L  G  R  G  I  G  L  I  L  Q  G  T  W  T  L  Q  M  G  F  A  F  F  S  D  L  I  A  Q  G  C  Y  L  H  </first_frame>
            <second_frame>  R  K  E  Y  M  S  L  G  K  S  G  E  Q  K  I  E  P  K  *  A  G  T  A  W  P  D  Q  R  S  F  S  I  T  *  N  F  L  R  S  N  D  N  Q  S  Q  Q  W  G  Y  S  A  I  L  S  P  A  A  D  L  Y  *  S  A  L  G  N  L  W  S  L  L  L  V  P  *  K  I  H  H  R  R  P  L  P  N  R  R  H  K  I  H  R  Q  I  S  M  S  K  I  L  F  F  L  H  R  S  P  L  Y  *  S  *  S  F  R  S  F  S  F  S  I  P  C  Y  P  F  S  T  H  S  T  P  K  T  T  L  V  P  S  F  N  C  R  L  S  R  F  L  F  F  S  F  S  I  R  Y  *  V  S  *  P  A  *  K  V  L  F  I  Y  L  H  R  S  S  I  C  F  A  S  S  L  L  L  R  N  F  C  C  F  I  F  K  G  K  T  Q  V  E  L  K  I  V  T  I  I  S  C  L  C  L  L  L  F  V  H  F  V  H  F  *  N  *  K  I  P  N  Q  I  T  L  D  *  D  V  G  L  G  *  S  C  K  G  R  G  L  F  K  W  G  L  L  F  S  P  I  *  L  H  R  D  A  I  Y  I </second_frame>
            <third_frame>   E  R  S  I  *  V  L  E  S  Q  V  S  R  K  L  S  L  N  R  Q  A  Q  P  G  Q  I  N  E  A  S  L  *  H  R  I  S  *  D  L  T  I  I  K  V  N  N  G  A  I  Q  L  Y  C  R  R  R  R  I  Y  T  N  R  R  L  G  I  S  G  L  F  F  W  C  P  E  K  F  I  T  V  V  H  Y  P  I  A  A  T  K  S  I  D  R  *  A  *  A  R  F  C  F  F  F  I  G  H  L  C  I  N  L  N  P  F  V  P  F  R  S  R  F  L  V  I  L  F  R  R  T  Q  L  Q  R  Q  H  W  F  R  P  S  I  A  G  Y  R  D  F  S  S  F  L  S  L  F  G  I  R  S  H  D  P  L  E  K  F  F  S  F  T  F  T  D  P  Q  F  A  L  P  L  R  F  C  *  G  I  F  V  V  L  S  S  K  E  R  P  K  W  S  *  K  S  L  L  *  S  L  A  C  A  Y  C  Y  L  C  I  L  F  I  S  R  I  E  K  S  Q  I  K  L  H  *  I  R  T  W  D  W  V  N  L  A  R  D  V  D  S  S  N  G  V  C  F  F  L  R  F  D  C  T  G  M  L  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9044" stop="9709"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSTMGLFSYTVAGGGFILIGAWESLVSSSGALKNSSPSSTTQSPPQNPSTDKHEQDSVFSSSVTFVLILILSFLFVLDSLLSFFDALNSKDNIGSVLQLQVIAISLLFFLYSVLGLMTRLKSSFHLPSPILNLLCLFAFAEEFLLFYLQRKDPSGVENRYYNLLLVPIAICAFCSFLELKNPKSNYTRLGRGIGLILQGTWTLQMGFAFFSDLIAQGCYLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14486" PGL_stop="14016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14486" e_stop="14016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14486" e_stop="14016" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14486" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2935" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</gDNA_template>
            <first_frame> L  C  Q  *  A  Y  F  G  C  C  L  S  T  S  Y  W  E  F  Q  I  Y  S  Q  L  L  V  C  K  S  S  F  T  L  K  F  R  *  I  *  E  L  *  A  *  L  F  I  L  V  Y  L  V  V  V  V  S  S  A  H  S  L  *  Q  *  L  N  I  *  Q  V  Q  *  E  K  S  R  T  G  S  P  M  T  *  A  E  P  V  *  T  T  I  T  G  F  W  H  C  Q  V  Q  P  V  L  *  C  L  W  F  S  V  D  F  I  E  A  G  Q  L  I  R  V  L  V  V  T  D  N  L  L  L  W  N  V  V  F  C  T  F  I  F  L  S  R  K  *  R  F  C  T  C  I  *  R  K  I  Y  L </first_frame>
            <second_frame>  F  A  N  E  H  I  L  V  A  A  S  V  H  L  I  G  N  F  R  Y  I  H  S  C  W  Y  A  R  V  L  L  L  *  S  S  D  K  Y  E  N  F  R  H  S  S  L  Y  *  C  I  W  L  W  *  F  L  Q  L  I  P  Y  N  S  D  *  T  F  D  K  F  N  R  R  K  A  E  L  V  R  R  *  H  E  Q  S  P  F  R  Q  L  L  L  V  S  G  I  V  K  C  S  Q  F  Y  D  V  Y  G  F  L  S  I  L  *  K  Q  D  S  *  L  E  C  W  *  *  L  I  I  C  Y  C  G  M  L  C  F  A  H  S  F  F  *  V  E  S  E  G  S  A  L  V  Y  K  G  R  Y  I   </second_frame>
            <third_frame>   L  P  M  S  I  F  W  L  L  P  Q  Y  I  L  L  G  I  S  D  I  F  T  V  V  G  M  Q  E  F  F  Y  S  E  V  P  I  N  M  R  T  L  G  I  A  L  Y  T  S  V  F  G  C  G  S  F  F  S  S  F  L  I  T  V  I  E  H  L  T  S  S  I  G  E  K  Q  N  W  F  A  D  D  M  S  R  A  R  L  D  N  Y  Y  W  F  L  A  L  S  S  A  A  S  F  M  M  F  M  V  F  C  R  F  Y  R  S  R  T  V  N  *  S  V  G  S  D  *  *  F  V  I  V  E  C  C  V  L  H  I  H  F  S  K  *  K  V  K  V  L  H  L  Y  I  K  E  D  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14484" stop="14128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPMSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPINMRTLGIALYTSVFGCGSFFSSFLITVIEHLTSSIGEKQNWFADDMSRARLDNYYWFLALSSAASFMMFMVFCRFYRSRTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="68583" PGL_stop="71851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68583" e_stop="68812"/>
            <exon e_start="69355" e_stop="69390"/>
            <exon e_start="70010" e_stop="70211"/>
            <exon e_start="71224" e_stop="71302"/>
            <exon e_start="71393" e_stop="71510"/>
            <exon e_start="71661" e_stop="71851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.865" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68583" e_stop="68812" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69355" e_stop="69390" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="70211" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71224" e_stop="71302" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="71393" e_stop="71510" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.944" acc_prob="0.865">
            <gDNA_intron_boundary i_start="71511" i_stop="71660" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71661" e_stop="71851" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68583" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71510"/>
              <exon start="71661" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT : GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M :   D  S  H  M  T  I  A  *  T  P  L  C  I  Q  S  A  D  K  F  F  S  S  E  G  *  K  W  F  W  N  V  K  K  G  Y  Q  F  *  *  S  M  K  F  N  C  K  *  E  I  L  V  K  L  I  I  I  H  S  L  V  H  L  T  </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K   : W  I  V  T  *  P  L  H  E  R  L  Y  V  Y  N  L  L  T  S  S  F  Q  V  K  V  E  S  G  F  G  M  *  K  K  G  I  N  F  S  D  Q  *  N  S  T  V  N  R  R  Y  L  *  S  S  L  S  F  I  H  L  C  I  *  H </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  :  G  *  S  H  D  H  C  M  N  A  F  M  Y  T  I  C  *  Q  V  L  F  K  *  R  L  K  V  V  L  E  C  E  K  R  V  S  I  L  V  I  N  E  I  Q  L  *  I  G  D  T  C  E  A  H  Y  H  S  F  T  C  A  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68583" stop="68812"/>
                    <exon start="69355" stop="69390"/>
                    <exon start="70010" stop="70211"/>
                    <exon start="71224" stop="71302"/>
                    <exon start="71393" stop="71510"/>
                    <exon start="71661" stop="71685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKMDSHMTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="82556" PGL_stop="81119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82556" e_stop="82358"/>
            <exon e_start="81407" e_stop="81119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.424" e_score="0.985"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="82556" e_stop="82358" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.424">
            <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="81407" e_stop="81119" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82556" stop="82358"/>
              <exon start="81407" stop="81119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1367" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG : TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATT</gDNA_template>
            <first_frame> K  V  G  R  D  *  H  A  P  R  G  D  K  T  D  *  R  A  H  Y  L  C  L  G  *  R  C  C  L  A  S  T  G  S  Y  *  A  L  *  D  P  E  L  E  R  R  I  S  G  A  C  R  E  G  A  T  T  G  S  C  C  L  I  L  L  *   : V  C  C  L  I  P  W  E  *  I  L  R  S  T  R  S  M  N  V  G  G  E  S  R  T  Q  S  F  P  I  S  S  H  F  L  L  S  N  L  C  R  T  I  V  T  L  L  A  Q  W  V  I  Y  V  S  E  L  V  H  L  M  S  *  C  F  L  T  L  S  L  P  W  F  W  *  L  K  D  A  L  I  F  V  M  L  R  *  I  R  S  T  L  W  Q  F  Q   </first_frame>
            <second_frame>  K  L  E  E  I  D  M  L  Q  E  V  T  K  Q  I  E  G  H  T  I  C  A  L  G  D  A  A  A  W  P  V  Q  G  L  I  R  H  F  R  T  Q  S  *  K  G  G  S  V  E  H  A  E  R  E  L  Q  Q  A  A  A  A  *  F  F  Y  E  :  F  A  V  *  Y  H  G  N  K  F  *  E  V  P  E  V  *  M  W  E  G  K  A  G  R  R  A  S  L  Y  P  A  T  F  Y  Y  Q  T  C  V  E  L  L  L  H  C  W  P  N  G  *  F  M  F  Q  S  W  Y  I  *  C  L  N  V  S  L  H  Y  H  C  H  G  F  G  S  *  K  M  L  *  Y  L  S  C  C  V  K  *  D  L  H  F  G  N  S  N  </second_frame>
            <third_frame>   S  W  K  R  L  T  C  S  K  R  *  Q  N  R  L  K  G  T  L  F  V  P  W  V  T  L  L  L  G  Q  Y  R  V  L  L  G  T  L  G  P  R  A  R  K  E  D  Q  W  S  M  Q  R  G  S  Y  N  R  Q  L  L  L  D  S  F  M  S :   L  L  F  D  T  M  G  I  N  F  E  K  Y  Q  K  Y  E  C  G  R  G  K  Q  D  A  E  L  P  Y  I  Q  P  L  F  I  I  K  L  V  *  N  Y  C  Y  I  V  G  P  M  G  N  L  C  F  R  A  G  T  S  N  V  L  M  F  P  Y  I  I  I  A  M  V  L  V  V  E  R  C  F  N  I  C  H  V  A  L  N  K  I  Y  T  L  A  I  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82521" stop="82358"/>
                    <exon start="81407" stop="81287"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNRLKGTLFVPWVTLLLGQYRVLLGTLGPRARKEDQWSMQRGSYNRQLLLDSFMSLLFDTMGINFEKYQKYECGRGKQDAELPYIQPLFIIKLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="88670" PGL_stop="94102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88670" e_stop="88990"/>
            <exon e_start="89561" e_stop="89673"/>
            <exon e_start="92533" e_stop="92582"/>
            <exon e_start="92713" e_stop="92784"/>
            <exon e_start="93434" e_stop="93494"/>
            <exon e_start="93705" e_stop="94102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88670" e_stop="88990" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89561" e_stop="89673" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.718">
            <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92533" e_stop="92582" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92713" e_stop="92784" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.854">
            <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93434" e_stop="93494" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93705" e_stop="94102" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88670" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88802" stop="88968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88804" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7166-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA : TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG : GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG : GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG : GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG : ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</gDNA_template>
            <first_frame> P  F  I  N  L  F  *  L  *  F  F  F  R  Y  *  V  K  R  K  G  E  N  G  *  *  Y  I  N  I  N  A  V  R  K  R  F  F  P  F  R  S  C  G  G  *  Q  N  H  I  F  D  S  I  G  K  S  E  Q  K  T  R  Q  R  S  N  N  Y  R  N  P  P  *  E  L  F  K  L  P  P  P  T  A  L  A  L  E  F  H  L  L  L  L  V  L  S  L  L  L  L  I  A  A  S  P  *  P  K  :  W  S  H  Q  R  N  L  L  K  S  *  G  N  S  R  S  S  M  L  A  G  Q  K  H  I  S  A  W  T  K  V  L  L  L  W  S  S  R :   V  W  Q  S  T  R  I  H  W  V  L  H  S  A  P  A   : G  I  M  M  T  K  L  Q  K  R  S  R  A  S  G  I  V  R  V  Y  Q  *  E  R   : G  R  S  V  T  A  C  F  F  *  P  L  I  M  I  L  L  E  K  N  R :   R  L  L  W  R  R  L  R  K  Q  Q  P  T  C  D  A  R  T  S  Y  T  C  Y  E  H  Y  V  F  V  V  H  V  Y  L  S  I  R  *  R  A  T  I  Q  F  *  C  D  M  L  L  K  P  H  P  L  H  C  C  D  S  D  L  V  *  *  D  W  V  G  E  *  Q  C  N  Y  A  N  C  C  V  M  H  L  D  C  M  S  H  N  S  Y  *  G  I  L  G  G  F  S  F  S  *  C  K  S  *  F  C  I  K  L  E  S  I  S  K  S  C  F  V  K  F  N  P  S  R  L  T  C  *  *  *  </first_frame>
            <second_frame>  R  L  L  I  Y  F  N  Y  N  F  S  S  D  I  R  *  K  E  K  E  R  T  D  S  N  I  *  I  S  T  L  Y  E  R  D  F  F  L  S  E  V  V  V  V  N  R  I  T  F  L  T  Q  S  E  S  R  S  R  K  R  D  N  E  A  T  T  T  G  I  R  H  E  N  S  S  S  F  H  L  L  Q  R  W  L  W  N  F  I  F  C  Y  S  S  *  A  F  F  Y  S  S  L  P  H  R  S  Q  N :   G  A  I  R  E  I  C  *  N  H  E  E  I  L  G  A  V  C  S  Q  V  R  N  I  F  L  H  G  Q  R  C  Y  F  C  G  H  Q   : G  F  G  R  A  Q  G  Y  I  G  C  S  T  L  P  L  Q  :  A  L  *  *  Q  S  C  R  S  A  A  G  L  L  E  L  S  V  C  T  N  E  R  E  :  E  G  V  S  L  H  A  F  S  D  P  *  *  *  F  C  W  R  R  T   : D  D  Y  Y  G  G  D  *  G  N  N  S  Q  H  V  M  L  G  H  L  I  H  A  M  N  I  T  F  L  L  Y  M  Y  I  *  V  L  D  E  E  Q  Q  S  S  S  D  V  T  C  C  *  N  P  I  H  Y  I  V  V  I  L  I  S  S  S  E  I  G  W  V  N  N  S  A  I  M  L  T  V  V  *  C  I  *  I  V  *  V  I  T  H  I  R  G  F  W  V  A  S  A  S  A  N  A  N  P  D  F  V  *  N  W  N  Q  F  P  K  A  A  L  *  S  S  I  P  V  V  *  R  V  N  N  E </second_frame>
            <third_frame>   V  Y  *  F  I  L  I  I  I  F  L  Q  I  L  G  E  K  K  R  R  E  R  I  V  I  Y  K  Y  Q  R  C  T  K  E  I  F  S  F  P  K  L  W  W  L  T  E  S  H  F  *  L  N  R  K  V  G  A  E  N  E  T  T  K  Q  Q  L  P  E  S  A  M  R  T  L  Q  A  S  T  S  Y  S  V  G  F  G  I  S  S  F  A  T  R  P  K  P  S  S  T  H  R  C  L  T  V  A  K   : M  E  P  S  E  K  S  V  E  I  M  R  K  F  S  E  Q  Y  A  R  R  S  E  T  Y  F  C  M  D  K  G  V  T  S  V  V  I  K  :  G  L  A  E  H  K  D  T  L  G  A  P  L  C  P  C  R :   H  Y  D  D  K  A  A  E  A  Q  Q  G  F  W  N  C  P  C  V  P  M  R  E  R :   K  E  C  H  C  M  L  F  L  T  P  D  N  D  F  A  G  E  E  Q  :  T  I  T  M  E  E  I  K  E  T  T  A  N  M  *  C  S  D  I  L  Y  M  L  *  T  L  R  F  C  C  T  C  I  F  E  Y  *  M  K  S  N  N  P  V  L  M  *  H  V  A  E  T  P  S  I  T  L  L  *  F  *  S  R  L  V  R  L  G  G  *  I  T  V  Q  L  C  *  L  L  C  D  A  S  R  L  Y  E  S  *  L  I  L  G  D  F  G  W  L  Q  L  Q  L  M  Q  I  L  I  L  Y  K  T  G  I  N  F  Q  K  L  L  C  E  V  Q  S  Q  S  S  D  V  L  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88822" stop="88990"/>
                    <exon start="89561" stop="89673"/>
                    <exon start="92533" stop="92582"/>
                    <exon start="92713" stop="92784"/>
                    <exon start="93434" stop="93494"/>
                    <exon start="93705" stop="93749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRKVGAENETTKQQLPESAMRTLQASTSYSVGFGISSFATRPKPSSTHRCLTVAKMEPSEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTITMEEIKETTANM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="100735" PGL_stop="99996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100735" e_stop="100640"/>
            <exon e_start="100533" e_stop="99996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.927"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="100735" e_stop="100640" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="100533" e_stop="99996" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100735" stop="100640"/>
              <exon start="100533" stop="99996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7909-2" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG : GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTT</gDNA_template>
            <first_frame> G  T  E  A  Y  P  D  L  G  R  H  C  Q  L  S  D  C  H  Q  L  D  F  L  P  F  T  C  H  A  C  L  K  :  V  F  C  V  E  H  R  S  C  K  S  H  E  C  P  K  S  D  F  N  S  R  I  V  L  V  C  E  I  C  S  M  S  M  E  T  T  G  C  K  V  E  D  H  K  A  I  L  Q  K  H  E  E  S  G  D  C  D  P  K  K  K  K  K  K  P  T  C  P  V  K  R  C  K  G  I  L  T  F  S  N  T  S  T  C  K  I  C  R  I  Q  V  C  L  R  H  R  F  P  A  D  H  A  C  N  P  T  S  S  S  S  Q  L  L  L  K  E  P  N  N  K  F  L  T  A  L  L  A  R  N  G  K  D  C  G  N  K  S  R  A  S  S  P  S  P  A  N  P  S  V  K  A  C  *  S  F  H  S  T  L  L  F  I  C  L  L  *  L  H  Y  F  M  E  N  N  V  V  L  F  </first_frame>
            <second_frame>  E  Q  K  P  I  Q  I  *  V  D  I  A  N  Y  L  I  A  I  N  S  I  F  S  L  L  P  A  M  P  V  *  R :   Y  F  V  W  N  I  D  H  A  S  L  M  N  A  Q  N  L  T  L  T  A  E  S  F  W  F  A  K  F  V  L  C  P  W  K  L  P  A  V  K  L  K  T  T  K  Q  Y  Y  K  N  T  R  N  L  G  I  V  T  L  R  R  R  R  R  N  L  P  V  L  S  K  D  A  R  G  F  *  P  S  Q  T  L  A  L  A  R  Y  A  G  F  K  F  A  S  D  T  G  S  L  L  I  T  P  V  T  P  L  L  H  H  H  S  C  C  *  R  N  P  I  T  S  F  *  L  L  C  L  Q  G  M  G  K  I  V  G  I  K  V  V  P  H  L  Q  A  L  R  T  L  L  *  K  L  V  D  R  F  T  A  H  Y  Y  S  F  V  F  C  N  Y  I  I  L  W  K  T  M  L  F  Y  F </second_frame>
            <third_frame>   N  R  S  L  S  R  F  R  *  T  L  P  T  I  *  L  P  S  T  R  F  S  P  F  Y  L  P  C  L  F  K   : G  I  L  C  G  T  *  I  M  Q  V  S  *  M  P  K  I  *  L  *  Q  P  N  R  F  G  L  R  N  L  F  Y  V  H  G  N  Y  R  L  *  S  *  R  P  Q  S  N  I  T  K  T  R  G  I  W  G  L  *  P  *  E  E  E  E  E  T  Y  L  S  C  Q  K  M  Q  G  D  F  D  L  L  K  H  *  H  L  Q  D  M  P  D  S  S  L  P  Q  T  Q  V  P  C  *  S  R  L  *  P  H  F  F  I  I  T  A  V  A  K  G  T  Q  *  Q  V  F  D  C  F  A  C  K  E  W  E  R  L  W  E  *  K  S  C  L  I  S  K  P  C  E  P  F  C  E  S  L  L  I  V  S  Q  H  I  T  I  H  L  S  F  V  I  T  L  F  Y  G  K  Q  C  C  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100735" stop="100640"/>
                    <exon start="100533" stop="100072"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTEAYPDLGRHCQLSDCHQLDFLPFTCHACLKVFCVEHRSCKSHECPKSDFNSRIVLVCEICSMSMETTGCKVEDHKAILQKHEESGDCDPKKKKKKPTCPVKRCKGILTFSNTSTCKICRIQVCLRHRFPADHACNPTSSSSQLLLKEPNNKFLTALLARNGKDCGNKSRASSPSPANPSVKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="125241" PGL_stop="122772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125241" e_stop="125217"/>
            <exon e_start="125112" e_stop="125038"/>
            <exon e_start="124886" e_stop="124820"/>
            <exon e_start="124438" e_stop="124116"/>
            <exon e_start="122807" e_stop="122772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125241" e_stop="125217" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.966">
            <gDNA_intron_boundary i_start="125216" i_stop="125113" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="125112" e_stop="125038" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="125037" i_stop="124887" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124820" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.854">
            <gDNA_intron_boundary i_start="124819" i_stop="124439" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="124438" e_stop="124116" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124115" i_stop="122808" i_length="1308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122807" e_stop="122772" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125241" stop="125217"/>
              <exon start="125112" stop="125038"/>
              <exon start="124886" stop="124820"/>
              <exon start="124438" stop="124116"/>
              <exon start="122807" stop="122772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCTGACATAGCACCACTGATG : TCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG : GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC : AGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAG : ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</gDNA_template>
            <first_frame> S  S  *  H  S  T  T  D   : V  H  S  S  W  S  A  M  S  Y  Q  L  S  W  Q  S  A  S  S  V  H  E  S  E  Q   : G  R  R  S  *  S  C  A  G  Q  Y  E  A  N  P  Q  S  V  P  S  K  V  T :   V  K  A  V  D  L  I  I  H  Q  A  F  Q  A  L  G  *  L  F  I  T  I  A  *  N  *  A  T  D  F  S  Q  R  V  *  N  C  S  E  I  I  *  T  S  *  E  L  G  T  S  R  T  S  L  F  S  D  I  *  L  A  D  A  D  D  C  N  H  S  W  L  C  W  L  D  D  L  C  H  T  P  Y  L  A  I  L  Y  I  P  T  C  K  Y  F  *  Q  G  P  S  A  *  S  K  K  Y  S  *   : D  T  S  F  R  R  V  V  D  G  S  S  </first_frame>
            <second_frame>  Q  A  D  I  A  P  L  M  :  S  T  L  L  G  L  P  C  P  I  N  S  V  G  N  L  P  L  Q  Y  M  N  L  N  K  :  A  E  E  V  E  A  V  L  A  N  T  K  Q  I  L  N  Q  F  L  R  K  S   : Q  L  K  Q  S  T  S  L  Y  I  K  P  F  K  P  L  A  S  Y  S  S  L  L  R  E  I  E  Q  L  I  S  L  K  E  Y  E  T  A  V  K  L  S  E  H  L  R  S  L  A  L  Q  G  L  H  Y  F  Q  T  Y  D  W  L  M  L  M  T  V  I  T  L  G  Y  V  G  W  M  I  Y  V  I  L  H  I  L  Q  S  Y  T  S  L  P  A  N  I  F  S  K  D  Q  V  P  N  P  R  S  T  V  K  :  I  H  L  L  G  G  L  L  M  G  V  A </second_frame>
            <third_frame>   K  L  T  *  H  H  *  C :   P  L  F  L  V  C  H  V  L  S  T  Q  L  A  I  C  L  F  S  T  *  I  *  T  R :   Q  K  K  L  K  L  C  W  P  I  R  S  K  S  S  I  S  S  F  E  S  H  :  S  *  S  S  R  P  H  Y  T  S  S  L  S  S  P  W  L  V  I  H  H  Y  C  V  K  L  S  N  *  F  L  S  K  S  M  K  L  Q  *  N  Y  L  N  I  L  G  A  W  H  F  K  D  F  T  I  F  R  H  M  I  G  *  C  *  *  L  *  S  L  L  A  M  L  V  G  *  S  M  S  Y  S  I  S  C  N  L  I  H  P  Y  L  Q  I  F  L  A  R  T  K  C  L  I  Q  E  V  Q  L  R :   Y  I  F  *  E  G  C  *  W  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125240" stop="125217"/>
                    <exon start="125112" stop="125038"/>
                    <exon start="124886" stop="124820"/>
                    <exon start="124438" stop="124116"/>
                    <exon start="122807" stop="122772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QADIAPLMSTLLGLPCPINSVGNLPLQYMNLNKAEEVEAVLANTKQILNQFLRKSQLKQSTSLYIKPFKPLASYSSLLREIEQLISLKEYETAVKLSEHLRSLALQGLHYFQTYDWLMLMTVITLGYVGWMIYVILHILQSYTSLPANIFSKDQVPNPRSTVKIHLLGGLLMGVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 20800 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2080 bytes was the average size of a spliced alignment
$ 14464 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1808 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:47:59
-->
