<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:35:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603900" ref_strand="+" ref_description="SGN-U603900 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349966|emb|CAO39865.1| (e_value=2e-48) unnamed; (*ATH) AT5G17980.1 (e_value=1e-48) | Symbol: None | C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain | chr5:5953598-5956747 FORWARD | Aliases: MCM23.5, MCM23_5; ">
      <seq>agtgcttgcacatgaagtaaagcactttttctctttttgtacatgttaccttcttttctcaactttaaccctttccatatcatctctgatctctccctccgaaagacaagaatatcaactacactctacatacatcatttgtttgctaagtgctgcttactaaaacaaattcgtctctttcttgaactgatatgcatactcagttcacaagtagtagacaataatatccaaataaaatgggcactgtgagaaagctagtagtagaagtaactgaggcacggaatctcctcccgaaggatgggcatggcacttcaagtccttacgtagttgttgatttctatggacagagaaggaagacaaggccagtcactcgtgatctcagcccccaatggaatgaagtgttggaattcaatgtcggaaaaccctctgatgtttttggggacatgctcgagcttgatgtctatcatgacaagtccattggacccacaaccaggaataatttcctcggaaggatcaggttgagtgccacacagtttgtcaagaaaggngaagaagcattgatctattaccctttggagaagaaatattgnttcagttggatttctggtgaaattggtttgaaaatttattttgtcgaacaattacttgttccggaantcaaaccggancctaancaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="18050" stop="19328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18349" g_stop="19028" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-U603900" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18349" e_stop="19028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTTGCACATGAAGTAAAGCACTTTTTCTCTTTTTGTACATGTTACCTTCTTTTCTCAACTTTAACCCTTTCCATATCATCTCTGATCTCTCCCTCCGAAAGACAAGAATATCAACTACACTCTACATACATCATTTGTTTGCTAAGTGCTGCTTACTAAAACAAATTCGTCTCTTTCTTGAACTGATATGCATACTCAGTTCACAAGTAGTAGACAATAATATCCAAATAAAATGGGCACTGTGAGAAAGCTAGTAGTAGAAGTAACTGAGGCACGGAATCTCCTCCCGAAGGATGGGCATGGCACTTCAAGTCCTTACGTAGTTGTTGATTTCTATGGACAGAGAAGGAAGACAAGGCCAGTCACTCGTGATCTCAGCCCCCAATGGAATGAAGTGTTGGAATTCAATGTCGGAAAACCCTCTGATGTTTTTGGGGACATGCTCGAGCTTGATGTCTATCATGACAAGTCCATTGGACCCACAACCAGGAATAATTTCCTCGGAAGGATCAGGTTGAGTGCCACACAGTTTGTCAAGAAAGGTGAAGAAGCATTGATCTATTACCCTTTGGAGAAGAAATATTGGTTCAGTTGGATTTCTGGTGAAATTGGTTTGAAAATTTATTTTGTCGAACAATTACTTGTTCCGGAAGTCAAACCGGAGCCTAAGCAAGCA</genome_strand>
        <mrna_strand>AGTGCTTGCACATGAAGTAAAGCACTTTTTCTCTTTTTGTACATGTTACCTTCTTTTCTCAACTTTAACCCTTTCCATATCATCTCTGATCTCTCCCTCCGAAAGACAAGAATATCAACTACACTCTACATACATCATTTGTTTGCTAAGTGCTGCTTACTAAAACAAATTCGTCTCTTTCTTGAACTGATATGCATACTCAGTTCACAAGTAGTAGACAATAATATCCAAATAAAATGGGCACTGTGAGAAAGCTAGTAGTAGAAGTAACTGAGGCACGGAATCTCCTCCCGAAGGATGGGCATGGCACTTCAAGTCCTTACGTAGTTGTTGATTTCTATGGACAGAGAAGGAAGACAAGGCCAGTCACTCGTGATCTCAGCCCCCAATGGAATGAAGTGTTGGAATTCAATGTCGGAAAACCCTCTGATGTTTTTGGGGACATGCTCGAGCTTGATGTCTATCATGACAAGTCCATTGGACCCACAACCAGGAATAATTTCCTCGGAAGGATCAGGTTGAGTGCCACACAGTTTGTCAAGAAAGGNGAAGAAGCATTGATCTATTACCCTTTGGAGAAGAAATATTGNTTCAGTTGGATTTCTGGTGAAATTGGTTTGAAAATTTATTTTGTCGAACAATTACTTGTTCCGGAANTCAAACCGGANCCTAANCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601566" ref_strand="+" ref_description="SGN-U601566 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349966|emb|CAO39865.1| (e_value=7e-68) unnamed; (*ATH) AT5G17980.1 (e_value=7e-67) | Symbol: None | C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain | chr5:5953598-5956747 FORWARD | Aliases: MCM23.5, MCM23_5; ">
      <seq>gaatttacaaaggtagagtccacttgcgcctctgtttcgatggtggatatcatgtgatggacgaagcagcacatgtttgtagtgattaccgtccaactgcaaggcaactatggaaagcaccaattgggactgtcgaattagggataattggatgtaagaatctgttgcccatgaaaggcaaagggtctacggatgcttatgcagttgccaaatatggtaacaagtgggtacgcactcgtaccatatctgatagtttagaacctaggtggaatgagcagtacacttggagagtttatgatccatccactgtgttgactatcggagtatttgatggctgctcggaagtagcatttgaatcagatgagtgcatgaggccagattttcggattggtaaggtgcgtgtccgtatttctacattgacaacaggtaaagtgtacaggaatactctcccattacttttgttatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="19900" stop="20967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20200" g_stop="20667" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-U601566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20200" e_stop="20667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTTATCAC</genome_strand>
        <mrna_strand>GAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTCTCCCATTACTTTTGTTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589576" ref_strand="+" ref_description="SGN-U589576 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagaaatacacagcaggggaaggcattctatccctaaatatgggatggcggaggtagtagaatccaaaggccataaactccattttagatgggtccaagtataaaacggatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="21826" stop="21112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21526" g_stop="21412" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U589576" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>115</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21526" e_stop="21412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCA</genome_strand>
        <mrna_strand>AAGAAATACACAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAAACTCCATTTTAGATGGGTCCAAGTATAAAACGGATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571239" ref_strand="+" ref_description="SGN-U571239 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|118487572|gb|ABK95612.1| (e_value=4e-141) unknown; (*ATH) AT1G60690.1 (e_value=4e-136) | Symbol: None | aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family | chr1:22353557-22355333 REVERSE | Aliases: F8A5.21, F8A5_21; (*SWP) sp|P40691|A115_TOBAC (e_value=2e-124) Auxin-induced protein PCNT115 OS=Nicotiana tabacum; ">
      <seq>ggagaaaatggaagtaacgacgccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatcggcaaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatccgttttgaagatggaaataggggcatttgtggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagacttgatatcgactgcattgatctctattatgttcatcgcatcgatactcagttgccaattgaagtcacgatgggagaactgaagaaacttgttgaagagggcaaaataaaatatataggactatcagaggcttgtgcatcaacaatcagaagggcccatgctgtgcatccaataacagctgttcagatggaatggtctttgtggactaaagatctggaggaagaaatagttcctacttgcagagaacttggcatagggattgtcccctatagtcctcttggacgaggattcttctcatcagggacaaaactgatcgaaagcttgcctgatgatgactttcgcaagaatttccctaggttcaagccagagaattttgagcataacaagcaagtatttgtgaatatcaatcttatggctgcaaggaaaggatgcactccttcacaattagcattggcatggattcttcaccaaggagatgatgtatgccctataccaggcactacgaagattggaaacttcaacgaaaacgtaggatccttatctgtaaaattgacagaggaagacatgaaagaactcgaatcgtatacctctggcgatgttgtcaaaggtgagagacatttatacatgtcgtcaacttggataaattcagagacaccgccattgtcctccctagaaagctgaataggggttcgacaagtgatatctatttagcttcttatgatgctcaaactctttgaagttattgttgcacccatgtgggatcctccaaaacttcactaatggaaaacccaataaacttggcgacatttctgaagagtccgaacaaatatagatagtttttgtacatgtactcgatacttatttatgaagagagacgtatgttatgaattgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29986" stop="26063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29686" g_stop="29452" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="433" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28250" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="606" r_length="173" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79">
            <donor d_prob="0.405" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28170" g_stop="28068" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="709" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26913" g_stop="26363" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="1260" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U571239" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1259</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29686" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28250"/>
          <exon e_start="28170" e_stop="28068"/>
          <exon e_start="26913" e_stop="26363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGA-GGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAGGTGACAGATATCTTAGGTCAACCCCCTTGCATCAAATTACTAGCAAATGAGTGTTTGTTCTGATACTTGTCATTTTCGGAGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAGGTTAGACCACATAAATCAAAACTGTGACTGCTTATGTGTTCTCTATTTTATAGATATGTATGTTGCGAATTTGCAGCGCGCACCAACTTGATGTTTTTAGTTGCATTTGAATTTAGTATCTTGTTATCTCTTTGTGCATTAATGTTTTACAGAGATTCTCAGAATACTCTGTAAGGTAAAGCCTTTGCCAAATCATGCTCATAAATGCCTTTTCCTCAGAACCCCTTTTGACTATGGTGATTGATGATCATGATCTGTTCTGGATACATAAAATGCAGAATAATAGGAAAATTTTCAAGGACATTTCTATTGACAGCTTCTCTAGGAATAGCTTAATGAAATATGTAAGTCCTTATTGTAACCCTTCTTGTAATCTGGAAATTCTACTGGTTCTGTCTGACACTAACTAAGCATGGAGTGATCTGGTTTTACCAAGCATGCAGTAATTTGACCAGCTGCTAAGATGGATATGTGATCATATAATATTAAATAAAATAAAAAATGATCCATATTCGCTAGAAGTGCTAGTAGCATTGAGAATGAAACAAGAGAAGTGCGCTTGAGATGGTTTGACATGTCTTGTGTCGACCTACGGATGCACCAGTTTGTAGTTGTGAAACTATAGCCAGTGGAGGTGTTGAAAAGGAGGCGAGGTAGAATCTTGAAATACTTACAAATTGCTAAGGATAAATGCGTACTTAGCAAAAAATATGGCACAGTAGAAGATAAAGAACCATATATAGGTGATATCTTGCTGTGGAGACTAGGATTTAGTCTTTCTTTTAAGAACTTCTAATATCGTCTTATATGTTTAACTTATATTTTGCTTTTATTTTATCTGATATGATGATGAAGTGAGTTGAATTTAAGTGGAGAAGTGAAAACTTTATGTAGTCGATTCCAACTTATTTGTAATTGAGGCATAGTTAGAATTGCAGTTATTATTCCAGGTTCAGGAAAAAATATCCTAAACTTCCAACTCACCCTTTCATCGATGCATCTGTTGACTGATTTAACGCACCATCTATCAAGATAAACATTTTGGCACAACCTTTTTGGTCCGTGAAATATATAGCTAGTGTAATTGTTGCACGAATGTATCTTTGTATTTTAACTGCGACATTAATTTATTATTTTGTTGGTTTGCTTTGTAGAATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGAATTGCTCCT</genome_strand>
        <mrna_strand>GGAGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTGAAGAAACTTGTTGAAGAGGGCAAAATAAAATATATAGGACTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTGCATCCAATAACAGCTGTTCAGATGGAATGGTCTTTGTGGACTAAAGATCTGGAGGAAGAAATAGTTCCTACTTGCAG...............................................................................AGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTTGGACGAGGATTCTTCTCATCAGGGACAAAACTGATCGAAAGCTTGCCTGATGATGACTTTCGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTTATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGAATTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595438" ref_strand="+" ref_description="SGN-U595438 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147853311|emb|CAN78540.1| (e_value=5e-32) hypothetical; (*ATH) AT1G60710.1 (e_value=2e-22) | Symbol: None | aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family | chr1:22358418-22360407 REVERSE | Aliases: F8A5.23, F8A5_23; (*SWP) sp|P49249|IN22_MAIZE (e_value=3e-26) IN2-2 protein OS=Zea mays GN=IN2-2; ">
      <seq>acgccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatcggcaaggtgaagatgtcttttttttcaaacaagtaattgcaaagtgctgcaggaattagttgtacttcctttttactttgttgtacatgtctgatcctgtagtttttcaattgttcactgagaaaaaaaaatgaaatttcaggattaaatcttccagagagtcgaatctgtatcctatagatttacgttttctacctgagttttatagatatgttatatgttcatgttaatctacctgattttatgtaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatccgttttgaanatggaaataggggcatttgtggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagacttgatatcgactgcattgatctctattatgttcatcgcatcgatactcagttgccaattgaagtcncggtttgacntctttgctncnaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29967" stop="28686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29667" g_stop="28986" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U595438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29667" e_stop="28986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTC</genome_strand>
        <mrna_strand>ACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAANATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCNCGGTTTGACNTCTTTGCTNCNAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602297" ref_strand="+" ref_description="SGN-U602297 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205226|gb|ABI34306.1| (e_value=6e-16) Polyprotein,; ">
      <seq>gcaacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaactcttaatgaatatctgtaacccgtatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="33657" stop="32676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33359" g_stop="32976" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U602297" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33359" e_stop="32976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAGGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGAT-AAAACTCTTAATGAATATCTGTAGCCTGTATGGGT</genome_strand>
        <mrna_strand>GCAACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTA-TTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAACTCTTAATGAATATCTGTAACCCGTATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595866" ref_strand="+" ref_description="SGN-U595866 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggaagactatttgataaaaaaaacatttttatgtgataaagaatatgtgttattctgtttggagaaaaaaaagacttttgtagttttgtactccatgagaaatgttagtgtgtctgatttttgtagactagaaacttttgctgttttatactttggataaattggactatgcaattggtttgaagaatatgaaaacttcacataataagtcagtgttgtacttttgattttctataaacttcaatgtaatatagaaataaattgtacaatttttttgtccttattgttagtatttaaaatactaagtggtatgtctatttatgatagaggaaaaataccagtgacttagaatttgtgattttgtgtctctatgcaatgaagtttgacattgtttaaacattgtcaaagagaattgcagcactataattctttcgtagaataatgttttcaacattaaaatatgtggaaaaactattttcaaatacttgaaaaatatttttgagatcacatttgaaatgtgggggttatttgcctatgattagacttggtgtctaatttaattttggagcaaaagatatgaaattcaataatacttttgtattatgttatacccacaaaattcttggnntatattcggtattgtggttgttgagtttctctaatactagtatatagtgncactagtatgaaacatccaaattatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="43196" stop="44503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43496" g_stop="44203" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-U595866" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43496" e_stop="44203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACTATTTGATAAGAAAAACATTTCTATGTGATAAAGAATATGTGTTATTCTGTTTGGAG-ATTTTTTTTTTTTTGTAGTTTTGTACTCTATGAGAAATGTTAATGTGTCTCA-TTTTGTAGACTAAAAACTTTTGTGGTTTTATACTCTGGATAAATTGGACTATGCAATTGGTTTGAAGAATATAAAAACTTCACATAATAAGTCAATGTTGTACTTTTGATTTTCTATAAACTTCAATGTAATATAGAAATAAATTGTACAATTTCTTTTTGTCCTTATTGTTAGTATTTAAAATACTAAGTGGTATGTCTATTTATGATAGAGAAAAAAATACCAGTGAATTACAATTTGTGATTTTGTATTTCTATGGAATGAACTTTGACATTGTGTAAATATTGCCAAAGAGAATTGCAGCACTATAATTCTTTCGTAGAATAATATTTCCAACATTAAAATAGGTGGAAAAACTATTTTCAAATACTTGAAAAATATTTTTGAGATCACATTTGAAATGTGGGGGTTATTTGCTTATGATTAGACTTGGTGTCTAATTTAACTTTGGAGCAAAAGATATGAAATTTAATGATACTTTTGTATTATGTTATACCCACAAAATTCTTGGAGTATATTTGATATTGTGGTTGTTGAGTTTCTCTATTACTAGTATATAGTGTCACTAGTATGAAACATCCAAATTATATAT</genome_strand>
        <mrna_strand>GGAAGACTATTTGATAAAAAAAACATTTTTATGTGATAAAGAATATGTGTTATTCTGTTTGGAGAAAAAAAAGACTTTTGTAGTTTTGTACTCCATGAGAAATGTTAGTGTGTCTGATTTTTGTAGACTAGAAACTTTTGCTGTTTTATACTTTGGATAAATTGGACTATGCAATTGGTTTGAAGAATATGAAAACTTCACATAATAAGTCAGTGTTGTACTTTTGATTTTCTATAAACTTCAATGTAATATAGAAATAAATTGTACAA-TT-TTTTTGTCCTTATTGTTAGTATTTAAAATACTAAGTGGTATGTCTATTTATGATAGAG-GAAAAATACCAGTGACTTAGAATTTGTGATTTTGTGTCTCTATGCAATGAAGTTTGACATTGTTTAAACATTGTCAAAGAGAATTGCAGCACTATAATTCTTTCGTAGAATAATGTTTTCAACATTAAAATATGTGGAAAAACTATTTTCAAATACTTGAAAAATATTTTTGAGATCACATTTGAAATGTGGGGGTTATTTGCCTATGATTAGACTTGGTGTCTAATTTAATTTTGGAGCAAAAGATATGAAATTCAATAATACTTTTGTATTATGTTATACCCACAAAATTCTTGGNNTATATTCGGTATTGTGGTTGTTGAGTTTCTCTAATACTAGTATATAGTGNCACTAGTATGAAACATCCAAATTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603900" ref_strand="+" ref_description="SGN-U603900 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349966|emb|CAO39865.1| (e_value=2e-48) unnamed; (*ATH) AT5G17980.1 (e_value=1e-48) | Symbol: None | C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain | chr5:5953598-5956747 FORWARD | Aliases: MCM23.5, MCM23_5; ">
      <seq>agtgcttgcacatgaagtaaagcactttttctctttttgtacatgttaccttcttttctcaactttaaccctttccatatcatctctgatctctccctccgaaagacaagaatatcaactacactctacatacatcatttgtttgctaagtgctgcttactaaaacaaattcgtctctttcttgaactgatatgcatactcagttcacaagtagtagacaataatatccaaataaaatgggcactgtgagaaagctagtagtagaagtaactgaggcacggaatctcctcccgaaggatgggcatggcacttcaagtccttacgtagttgttgatttctatggacagagaaggaagacaaggccagtcactcgtgatctcagcccccaatggaatgaagtgttggaattcaatgtcggaaaaccctctgatgtttttggggacatgctcgagcttgatgtctatcatgacaagtccattggacccacaaccaggaataatttcctcggaaggatcaggttgagtgccacacagtttgtcaagaaaggngaagaagcattgatctattaccctttggagaagaaatattgnttcagttggatttctggtgaaattggtttgaaaatttattttgtcgaacaattacttgttccggaantcaaaccggancctaancaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="65339" stop="66617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65638" g_stop="66317" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-U603900" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65638" e_stop="66317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTTGCACATGAAGTAAAGCACTTTTTCTCTTTTTGTACATGTTACCTTCTTTTCTCAACTTTAACCCTTTCCATATCATCTCTGATCTCTCCCTCCGAAAGACAAGAATATCAACTACACTCTACATACATCATTTGTTTGCTAAGTGCTGCTTACTAAAACAAATTCGTCTCTTTCTTGAACTGATATGCATACTCAGTTCACAAGTAGTAGACAATAATATCCAAATAAAATGGGCACTGTGAGAAAGCTAGTAGTAGAAGTAACTGAGGCACGGAATCTCCTCCCGAAGGATGGGCATGGCACTTCAAGTCCTTACGTAGTTGTTGATTTCTATGGACAGAGAAGGAAGACAAGGCCAGTCACTCGTGATCTCAGCCCCCAATGGAATGAAGTGTTGGAATTCAATGTCGGAAAACCCTCTGATGTTTTTGGGGACATGCTCGAGCTTGATGTCTATCATGACAAGTCCATTGGACCCACAACCAGGAATAATTTCCTCGGAAGGATCAGGTTGAGTGCCACACAGTTTGTCAAGAAAGGTGAAGAAGCATTGATCTATTACCCTTTGGAGAAGAAATATTGGTTCAGTTGGATTTCTGGTGAAATTGGTTTGAAAATTTATTTTGTCGAACAATTACTTGTTCCGGAAGTCAAACCGGAGCCTAAGCAAGCA</genome_strand>
        <mrna_strand>AGTGCTTGCACATGAAGTAAAGCACTTTTTCTCTTTTTGTACATGTTACCTTCTTTTCTCAACTTTAACCCTTTCCATATCATCTCTGATCTCTCCCTCCGAAAGACAAGAATATCAACTACACTCTACATACATCATTTGTTTGCTAAGTGCTGCTTACTAAAACAAATTCGTCTCTTTCTTGAACTGATATGCATACTCAGTTCACAAGTAGTAGACAATAATATCCAAATAAAATGGGCACTGTGAGAAAGCTAGTAGTAGAAGTAACTGAGGCACGGAATCTCCTCCCGAAGGATGGGCATGGCACTTCAAGTCCTTACGTAGTTGTTGATTTCTATGGACAGAGAAGGAAGACAAGGCCAGTCACTCGTGATCTCAGCCCCCAATGGAATGAAGTGTTGGAATTCAATGTCGGAAAACCCTCTGATGTTTTTGGGGACATGCTCGAGCTTGATGTCTATCATGACAAGTCCATTGGACCCACAACCAGGAATAATTTCCTCGGAAGGATCAGGTTGAGTGCCACACAGTTTGTCAAGAAAGGNGAAGAAGCATTGATCTATTACCCTTTGGAGAAGAAATATTGNTTCAGTTGGATTTCTGGTGAAATTGGTTTGAAAATTTATTTTGTCGAACAATTACTTGTTCCGGAANTCAAACCGGANCCTAANCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601566" ref_strand="+" ref_description="SGN-U601566 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349966|emb|CAO39865.1| (e_value=7e-68) unnamed; (*ATH) AT5G17980.1 (e_value=7e-67) | Symbol: None | C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain | chr5:5953598-5956747 FORWARD | Aliases: MCM23.5, MCM23_5; ">
      <seq>gaatttacaaaggtagagtccacttgcgcctctgtttcgatggtggatatcatgtgatggacgaagcagcacatgtttgtagtgattaccgtccaactgcaaggcaactatggaaagcaccaattgggactgtcgaattagggataattggatgtaagaatctgttgcccatgaaaggcaaagggtctacggatgcttatgcagttgccaaatatggtaacaagtgggtacgcactcgtaccatatctgatagtttagaacctaggtggaatgagcagtacacttggagagtttatgatccatccactgtgttgactatcggagtatttgatggctgctcggaagtagcatttgaatcagatgagtgcatgaggccagattttcggattggtaaggtgcgtgtccgtatttctacattgacaacaggtaaagtgtacaggaatactctcccattacttttgttatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="67189" stop="68256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67489" g_stop="67956" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-U601566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67489" e_stop="67956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTTATCAC</genome_strand>
        <mrna_strand>GAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTCTCCCATTACTTTTGTTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565197" ref_strand="+" ref_description="SGN-U565197 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15238697|ref|NP_197299.1| (e_value=8e-56) C2 domain-containing protein [Arabidopsis thaliana]; (*ATH) AT5G17980.1 (e_value=7e-58) | Symbol: None | C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain | chr5:5953598-5956747 FORWARD | Aliases: MCM23.5, MCM23_5; ">
      <seq>gttttcaatgataatagttacttatggactaatacagttatggaaattaatattgaaatacatagtgacctttctgagatgacatatatagaaatgaaaaaaaaaaacttctgaactattataacataaaaataggctaatgcacagcacaagcgcgagtatatttactagtacttaaatagaactagagcattctgtctgaaagtgaaggcaaccttctaaagaaattcaaagcaggggaaggcattctatccctaaatatgggatggcggaggtagtaaaatccaaaggccataaacaccattttagatggtaccaagtataaaatgaatgccacgacaaagcacagcccaataaatatccctgtggctcgagggtcacgccaagttaccaatgcttgcactctctccccttgtgttgcgaaatctcccaagattgtctgaacccgttccccaagcatgcgcagtttatcatatctggctcgtaccaattcgttaggtctagtgcaaggcattgcatcaaactcttcatcaagctcatctctgtctagtgactctgccagtgagatctttggatcaaagtggggtaaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="69336" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69036" g_stop="68443" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U565197" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69036" e_stop="68443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGTAAAGTAT</genome_strand>
        <mrna_strand>GTTTTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAAAATCCAAAGGCCATAAACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGTAAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589576" ref_strand="+" ref_description="SGN-U589576 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagaaatacacagcaggggaaggcattctatccctaaatatgggatggcggaggtagtagaatccaaaggccataaactccattttagatgggtccaagtataaaacggatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="69115" stop="68401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68815" g_stop="68701" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U589576" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>115</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68815" e_stop="68701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCA</genome_strand>
        <mrna_strand>AAGAAATACACAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAAACTCCATTTTAGATGGGTCCAAGTATAAAACGGATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595438" ref_strand="+" ref_description="SGN-U595438 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147853311|emb|CAN78540.1| (e_value=5e-32) hypothetical; (*ATH) AT1G60710.1 (e_value=2e-22) | Symbol: None | aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family | chr1:22358418-22360407 REVERSE | Aliases: F8A5.23, F8A5_23; (*SWP) sp|P49249|IN22_MAIZE (e_value=3e-26) IN2-2 protein OS=Zea mays GN=IN2-2; ">
      <seq>acgccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatcggcaaggtgaagatgtcttttttttcaaacaagtaattgcaaagtgctgcaggaattagttgtacttcctttttactttgttgtacatgtctgatcctgtagtttttcaattgttcactgagaaaaaaaaatgaaatttcaggattaaatcttccagagagtcgaatctgtatcctatagatttacgttttctacctgagttttatagatatgttatatgttcatgttaatctacctgattttatgtaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatccgttttgaanatggaaataggggcatttgtggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagacttgatatcgactgcattgatctctattatgttcatcgcatcgatactcagttgccaattgaagtcncggtttgacntctttgctncnaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="77260" stop="75979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76960" g_stop="76279" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U595438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76960" e_stop="76279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTC</genome_strand>
        <mrna_strand>ACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAANATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCNCGGTTTGACNTCTTTGCTNCNAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579479" ref_strand="+" ref_description="SGN-U579479 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|118485798|gb|ABK94747.1| (e_value=0) unknown; (*ATH) AT4G16120.1 (e_value=0) | Symbol: None | phytochelatin synthetase-related, contains Pfam PF04833: Phytochelatin synthetase-like conserved region; supporting cDNA gi:26449620:dbj:AK117261.1: | chr4:9116313-9119325 REVERSE | Aliases: DL4100C, FCAALL.104; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=0) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7; ">
      <seq>tcaccacaacatttttctctctctttctcctaatcatcaccgtcgccggacaaacaactccgatggctgaagctccggcaccggcagccgacgactgtaacggtatattcttgcagtatgtgtttaattccggatctaaaatcaaacccactttgaaaactcgtcaaccctacaagtttcagtctattctcagtataactaacaacggacttgaggaacttaagttatggagggtttttgttgggtttcaacatgatgagattttggtttctgcttctaacgctctgcttgctgatggggaatcatttcctgctttagttggtaatggtactgtttttgctggatttccggctgccgatcttaagacagctgtggaaactgctggagatactacacagacgagtgttcaaatcaaaattgtgggtacccagtttggagttggctctcctaatgtacctatgccctccaatatctctttggaaaatgatgggtttatttgccctaaaccctctatgcaaggaaagagtgttatgcaagtatgctgtattaaagacgaaaatttcaagacaaatttgacgttgggtgagaaatttagtccacgccaagatggggatcttacaattatgtatgatatcctaagaacatatgattcaaattactgggctcaggttaccattgcaaaccataatccccttggtcgccttgataactggaaactaagttgggactggatgaaagatgagtttatttgggaaatgaaaggcgcatatccctctgttgttgatacttctgagtgtgtttttgggccacaggcaaaattttatcaaaaccttgacttttccactggtttgaactgtcagagaaggccgacactaattgatctgccgctggagaagaccaatgatacaaagttgggaatgatacctttttgttgtcggaatgggacaatcttgccacctgctatggacccaagcaagtctgtttcagcattccagatgaatgtctttaaaatgcctccagatcttaatcgatcctcattcactcctccacagaattggaagatcgaaggcagactgaatccagattacaagtgtggacctccagtccgtgtaagccccacccaagtccctgatcctagtggattgttacctgctacatcagtatttgctagctggcaagttgtatgcaacatcacccaaccaaaaggagctagccccagatgctgtgtttctttctctgctttctacaatgaatctatcattccttgtccaacatgcgcctgtggttgtccttccaatactgctcgtacatgtagcacgaaagccccagctcttctcctcccatctcaggctcttctggttccatttgacaatagaaccaagatgtcccttgcctgggctgaaattaatcatcttccagtttcaaacccattgccatgtggagataactgtggtgtaagcatcaactggcatttgttcacagactataggggtggatggtctgccaggatcaccatcttcaactgggaggatgctgcttttgctgattggttcactgcggtggaattggacaaagcagcggctggttttgacgcagtgtattcattcaatggaactatgttagatggggttaataataccatattcatgcagggccttccaggcttgaactatatagtagcagaagcagatggagctaatccagcgaaagatccccgagtacctgggaaacaacaatcagtaatctcattcacaaagaagaatatcccaaacatcaacgttgctgctggtgatgggtttccaacaaaattatacttcaatggagaagagtgctcattgccaaagctactcccaacaagcagttcatctagaatatcttcattcactgtcactacttccattcttgcagcagttgtggtttttatgttggtgcgacaatagcagtgagctgtggcgttttctcttcgtttcatacctgccaattgattcattctttagcgtctgctaccaggttttaatgctggtgaccaatctttcaatcagtttgtcggattatgtattcagggacgtgggtttttcggcgagttttgatttgtaactatttattacactctggaattctcattccagacaatatttgactttaaagttaatacctgttatattagcagataagataagaatacctcagtttgtcaaaaaaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="105052" stop="101537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104752" g_stop="104234" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104233" i_stop="103516" i_length="718">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103515" g_stop="101842" g_length="1674"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="2193" r_length="1674" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2197" polyA_stop="2207"/>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-U579479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2193</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104752" e_stop="104234"/>
          <exon e_start="103515" e_stop="101842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCACAACATTTTTCTCTCTCTTTCTCCTAATCATCACCGTCGCCGGACAAACAACTCCGATGGCTGAAGCTCCGGCACCGGCAGCCGACGACTGTAACGGTATATTCTTGCAGTATGTGTTTAATTCCGGATCTAAAATCAAACCCACTTTGAAAACTCGTCAACCCTACAAGTTTCAGTCTATTCTCAGTATAACTAACAACGGACTTGAGGAACTTAAGTTATGGAGGGTTTTTGTTGGGTTTCAACATGATGAGATTTTGGTTTCTGCTTCTAACGCTCTGCTTGCTGATGGGGAATCATTTCCTGCTTTAGTTGGTAATGGTACTGTTTTTGCTGGATTTCCGGCTGCCGATCTTAAGACAGCTGTGGAAACTGCTGGAGATACTACACAGACGAGTGTTCAAATCAAAATTGTGGGTACCCAGTTTGGAGTTGGCTCTCCTAATGTACCTATGCCCTCCAATATCTCTTTGGAAAATGATGGGTTTATTTGCCCTAAACCCTCTATGCAAGGTACGGATCTTAGATTAAACATCATTGCTGCACCTCTTAATATAATATCTAAAATTAGCAGGACTGGTTATATGAATTCTCTCTAGTTTGAATAATTTGCAGAGGATATGAAATATTTTGGATTGATTCGTATGCAACTTTGTTTTTGTGCTTTACTTAATCAAATTTAGGCCAAAGTTATGGAGTAGTTCTTTTGTGCTACTTGCAAAGTACAAAATGGCTTTAGTTTAGATCTGTTGTTTAAGCTGATTCATTGTTGTTTTTTATGAATGATGCTGGAGGTTATATTAACATTCAAATTGGCCAAATAATCGTGTGTCCTGTACTATTTAACTTTCAATTTAGATTTATTGGAGAATGATGAAGATGGGTATTAGACCGATAACTTTCTGGAGAATTTGGTCCATTACTATGTCAACTTGGATGGAACATTATGTCTGAATCTTGACAACTGTATACGTTGTAAAGATTAGCTGTTATTTGACTGTCTTCTTATCTGGAATTCCTAATGTATAGTTTGTAAAATTTCTTGATTTGTTACTTGGAAGTATGATTAGCCATTGACATTTCAAGCTTCTCCCTTGAATCATTAAAGTGGTCTAGAACATGTATTATTTAGAAATTCTACCTGCCTTCAGTATATTCTTCCTTTTTTGTTTTAAAACAAAACTGTACTTTTTGCATATCATATCTGAATTGCCTATGCTTAACTGTTCAGGAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCAGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</genome_strand>
        <mrna_strand>TCACCACAACATTTTTCTCTCTCTTTCTCCTAATCATCACCGTCGCCGGACAAACAACTCCGATGGCTGAAGCTCCGGCACCGGCAGCCGACGACTGTAACGGTATATTCTTGCAGTATGTGTTTAATTCCGGATCTAAAATCAAACCCACTTTGAAAACTCGTCAACCCTACAAGTTTCAGTCTATTCTCAGTATAACTAACAACGGACTTGAGGAACTTAAGTTATGGAGGGTTTTTGTTGGGTTTCAACATGATGAGATTTTGGTTTCTGCTTCTAACGCTCTGCTTGCTGATGGGGAATCATTTCCTGCTTTAGTTGGTAATGGTACTGTTTTTGCTGGATTTCCGGCTGCCGATCTTAAGACAGCTGTGGAAACTGCTGGAGATACTACACAGACGAGTGTTCAAATCAAAATTGTGGGTACCCAGTTTGGAGTTGGCTCTCCTAATGTACCTATGCCCTCCAATATCTCTTTGGAAAATGATGGGTTTATTTGCCCTAAACCCTCTATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAAGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCAGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565092" ref_strand="+" ref_description="SGN-U565092 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gtcccttcccatttccattttccattttccatttttcactaacactacactctcaactcattcttctctactcaaaattttatcaaaaatgggagtgatgttagctttttcgatcctcataatcactatgatgataacgggtatgcaaaatgagggtaatttggtaaatgccaatgaaacaacttgggcaggttcaaagtatcagattgaatgtacaatgtgtgccgcatgtgacaacccttgcgccaccccatctccgccgccgcctcagccgccgtcgcctcctccaccgccttctacctcttataattgtcctcctccaccctctcctcctagttccgggggaaattactactactctccaccgccaccaccgccttcctcctccggcggcggcggcggcggtaattactactattcaccacctccaccttaccaaaattacccttctggacctactcctccacctccgaatccaattgttccgtattttccattctacttttacaatcctccaccgccttcacagtctgctgctattaagctcactgatttttcacccaaatcttctattttctttacggtgttcattgcgttgttgattttccattgaaattaatggggggaaattaaataaagtgtctggaatcgcacagatctacaaatgagagcaaagatattgaagaaaaaattggaaagctgtcttgtttctctcatcttctgtaaaattcttgaccattcttcttattatattctcctgtaattttagtttaacttaaattcatattcgtatagaatgtaacaaaactttagtcatttttgtaacaattataaactcaacttctcattcatattctatatattttcactgcaattttattgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="132866" stop="134350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133165" g_stop="134050" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="887" r_length="887" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-U565092" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133165" e_stop="134050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTCCCATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTCTTTACGGTGTTCATTGCGTTGTTGATTTTCCATTGAAATTAATGGGGGGAAATTAAATAAAGTGTCTGGAATCGCACAGATCTACAAATGAGAGCAAAGATATTGAAG-AAAAATTGGAAAGCTGTCTTGTTTCTCTCATCTTCTGTAAAATTCTTGACCATTCTTCTTATTATATTCTCCTGTAATTTTAGTTTAACTTAAATTCATATTCGTATAGAATGTAACAAAACTTTAGTCATTTTTGTAACAATTATAAACTCAACTTCTCATTCATATTCTATATATTTTCACTGCAATTTTATTGCTTTT</genome_strand>
        <mrna_strand>GTCCCTTCCCATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTCTTTACGGTGTTCATTGCGTTGTTGATTTTCCATTGAAATTAATGGGGGGAAATTAAATAAAGTGTCTGGAATCGCACAGATCTACAAATGAGAGCAAAGATATTGAAGAAAAAATTGGAAAGCTGTCTTGTTTCTCTCATCTTCTGTAAAATTCTTGACCATTCTTCTTATTATATTCTCCTGTAATTTTAGTTTAACTTAAATTCATATTCGTATAGAATGTAACAAAACTTTAGTCATTTTTGTAACAATTATAAACTCAACTTCTCATTCATATTCTATATATTTTCACTGCAATTTTATTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="18349" PGL_stop="19028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18349" e_stop="19028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="18349" e_stop="19028" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18349" stop="19028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGCTTGCACATGAAGTAAAGCACTTTTTCTCTTTTTGTACATGTTACCTTCTTTTCTCAACTTTAACCCTTTCCATATCATCTCTGATCTCTCCCTCCGAAAGACAAGAATATCAACTACACTCTACATACATCATTTGTTTGCTAAGTGCTGCTTACTAAAACAAATTCGTCTCTTTCTTGAACTGATATGCATACTCAGTTCACAAGTAGTAGACAATAATATCCAAATAAAATGGGCACTGTGAGAAAGCTAGTAGTAGAAGTAACTGAGGCACGGAATCTCCTCCCGAAGGATGGGCATGGCACTTCAAGTCCTTACGTAGTTGTTGATTTCTATGGACAGAGAAGGAAGACAAGGCCAGTCACTCGTGATCTCAGCCCCCAATGGAATGAAGTGTTGGAATTCAATGTCGGAAAACCCTCTGATGTTTTTGGGGACATGCTCGAGCTTGATGTCTATCATGACAAGTCCATTGGACCCACAACCAGGAATAATTTCCTCGGAAGGATCAGGTTGAGTGCCACACAGTTTGTCAAGAAAGGTGAAGAAGCATTGATCTATTACCCTTTGGAGAAGAAATATTGGTTCAGTTGGATTTCTGGTGAAATTGGTTTGAAAATTTATTTTGTCGAACAATTACTTGTTCCGGAAGTCAAACCGGAGCCTAAGCAAGCA</gDNA_template>
            <first_frame> G  A  C  T  *  S  K  A  L  F  L  F  L  Y  M  L  P  S  F  L  N  F  N  P  F  H  I  I  S  D  L  S  L  R  K  T  R  I  S  T  T  L  Y  I  H  H  L  F  A  K  C  C  L  L  K  Q  I  R  L  F  L  E  L  I  C  I  L  S  S  Q  V  V  D  N  N  I  Q  I  K  W  A  L  *  E  S  *  *  *  K  *  L  R  H  G  I  S  S  R  R  M  G  M  A  L  Q  V  L  T  *  L  L  I  S  M  D  R  E  G  R  Q  G  Q  S  L  V  I  S  A  P  N  G  M  K  C  W  N  S  M  S  E  N  P  L  M  F  L  G  T  C  S  S  L  M  S  I  M  T  S  P  L  D  P  Q  P  G  I  I  S  S  E  G  S  G  *  V  P  H  S  L  S  R  K  V  K  K  H  *  S  I  T  L  W  R  R  N  I  G  S  V  G  F  L  V  K  L  V  *  K  F  I  L  S  N  N  Y  L  F  R  K  S  N  R  S  L  S  K   </first_frame>
            <second_frame>  V  L  A  H  E  V  K  H  F  F  S  F  C  T  C  Y  L  L  F  S  T  L  T  L  S  I  S  S  L  I  S  P  S  E  R  Q  E  Y  Q  L  H  S  T  Y  I  I  C  L  L  S  A  A  Y  *  N  K  F  V  S  F  L  N  *  Y  A  Y  S  V  H  K  *  *  T  I  I  S  K  *  N  G  H  C  E  K  A  S  S  R  S  N  *  G  T  E  S  P  P  E  G  W  A  W  H  F  K  S  L  R  S  C  *  F  L  W  T  E  K  E  D  K  A  S  H  S  *  S  Q  P  P  M  E  *  S  V  G  I  Q  C  R  K  T  L  *  C  F  W  G  H  A  R  A  *  C  L  S  *  Q  V  H  W  T  H  N  Q  E  *  F  P  R  K  D  Q  V  E  C  H  T  V  C  Q  E  R  *  R  S  I  D  L  L  P  F  G  E  E  I  L  V  Q  L  D  F  W  *  N  W  F  E  N  L  F  C  R  T  I  T  C  S  G  S  Q  T  G  A  *  A  S  </second_frame>
            <third_frame>   C  L  H  M  K  *  S  T  F  S  L  F  V  H  V  T  F  F  S  Q  L  *  P  F  P  Y  H  L  *  S  L  P  P  K  D  K  N  I  N  Y  T  L  H  T  S  F  V  C  *  V  L  L  T  K  T  N  S  S  L  S  *  T  D  M  H  T  Q  F  T  S  S  R  Q  *  Y  P  N  K  M  G  T  V  R  K  L  V  V  E  V  T  E  A  R  N  L  L  P  K  D  G  H  G  T  S  S  P  Y  V  V  V  D  F  Y  G  Q  R  R  K  T  R  P  V  T  R  D  L  S  P  Q  W  N  E  V  L  E  F  N  V  G  K  P  S  D  V  F  G  D  M  L  E  L  D  V  Y  H  D  K  S  I  G  P  T  T  R  N  N  F  L  G  R  I  R  L  S  A  T  Q  F  V  K  K  G  E  E  A  L  I  Y  Y  P  L  E  K  K  Y  W  F  S  W  I  S  G  E  I  G  L  K  I  Y  F  V  E  Q  L  L  V  P  E  V  K  P  E  P  K  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18573" stop="19028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPNKMGTVRKLVVEVTEARNLLPKDGHGTSSPYVVVDFYGQRRKTRPVTRDLSPQWNEVLEFNVGKPSDVFGDMLELDVYHDKSIGPTTRNNFLGRIRLSATQFVKKGEEALIYYPLEKKYWFSWISGEIGLKIYFVEQLLVPEVKPEPKQA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18364" stop="18597"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKALFLFLYMLPSFLNFNPFHIISDLSLRKTRISTTLYIHHLFAKCCLLKQIRLFLELICILSSQVVDNNIQIKWAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20200" PGL_stop="20667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20200" e_stop="20667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="20200" e_stop="20667" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20200" stop="20667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTTATCAC</gDNA_template>
            <first_frame> E  F  T  K  V  E  S  T  C  A  S  V  S  M  V  D  I  M  *  W  T  K  Q  H  M  F  V  V  I  T  V  Q  L  Q  G  N  Y  G  K  H  Q  L  G  L  S  N  *  G  *  L  D  V  R  I  C  C  P  *  K  A  K  G  L  R  M  L  M  Q  L  P  N  M  V  T  S  G  Y  A  L  V  P  Y  L  I  V  *  N  L  G  G  M  S  S  T  L  G  E  F  M  I  H  P  L  C  *  L  S  E  Y  L  M  A  A  R  K  *  H  L  N  Q  M  S  A  *  G  Q  I  F  G  L  V  R  C  V  S  V  F  L  H  *  Q  Q  V  K  C  T  G  I  L  S  H  Y  F  C  Y  H </first_frame>
            <second_frame>  N  L  Q  R  *  S  P  L  A  P  L  F  R  W  W  I  S  C  D  G  R  S  S  T  C  L  *  *  L  P  S  N  C  K  A  T  M  E  S  T  N  W  D  C  R  I  R  D  N  W  M  *  E  S  V  A  H  E  R  Q  R  V  Y  G  C  L  C  S  C  Q  I  W  *  Q  V  G  T  H  S  Y  H  I  *  *  F  R  T  *  V  E  *  A  V  H  L  E  S  L  *  S  I  H  C  V  D  Y  R  S  I  *  W  L  L  G  S  S  I  *  I  R  *  V  H  E  A  R  F  S  D  W  *  G  A  C  P  Y  F  Y  I  D  N  R  *  S  V  Q  E  Y  F  P  I  T  F  V  I   </second_frame>
            <third_frame>   I  Y  K  G  R  V  H  L  R  L  C  F  D  G  G  Y  H  V  M  D  E  A  A  H  V  C  S  D  Y  R  P  T  A  R  Q  L  W  K  A  P  I  G  T  V  E  L  G  I  I  G  C  K  N  L  L  P  M  K  G  K  G  S  T  D  A  Y  A  V  A  K  Y  G  N  K  W  V  R  T  R  T  I  S  D  S  L  E  P  R  W  N  E  Q  Y  T  W  R  V  Y  D  P  S  T  V  L  T  I  G  V  F  D  G  C  S  E  V  A  F  E  S  D  E  C  M  R  P  D  F  R  I  G  K  V  R  V  R  I  S  T  L  T  T  G  K  V  Y  R  N  T  F  P  L  L  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20202" stop="20666"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKAPIGTVELGIIGCKNLLPMKGKGSTDAYAVAKYGNKWVRTRTISDSLEPRWNEQYTWRVYDPSTVLTIGVFDGCSEVAFESDECMRPDFRIGKVRVRISTLTTGKVYRNTFPLLLLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21526" PGL_stop="21412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21526" e_stop="21412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="21526" e_stop="21412" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21526" stop="21412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCA</gDNA_template>
            <first_frame> K  K  F  K  A  G  E  G  I  L  S  L  N  M  G  W  R  R  *  *  N  P  K  A  I  D  T  I  L  D  G  T  K  Y  K  M  N  A  </first_frame>
            <second_frame>  R  N  S  K  Q  G  K  A  F  Y  P  *  I  W  D  G  G  G  S  R  I  Q  R  P  *  T  P  F  *  M  V  P  S  I  K  *  M  P </second_frame>
            <third_frame>   E  I  Q  S  R  G  R  H  S  I  P  K  Y  G  M  A  E  V  V  E  S  K  G  H  R  H  H  F  R  W  Y  Q  V  *  N  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0023H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29686" PGL_stop="26363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29686" e_stop="29452"/>
            <exon e_start="29208" e_stop="29011"/>
            <exon e_start="28421" e_stop="28250"/>
            <exon e_start="28170" e_stop="28068"/>
            <exon e_start="26913" e_stop="26363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.530" e_score="1.000"/>
          <exon-intron don_prob="0.405" acc_prob="0.000" e_score="0.942"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.942"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29686" e_stop="29452" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29208" e_stop="29011" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.530">
            <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="28421" e_stop="28250" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.405" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="28170" e_stop="28068" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="26913" e_stop="26363" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29686" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28250"/>
              <exon start="28170" stop="28068"/>
              <exon start="26913" stop="26363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG : GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG : ATGGGAGAACTGAAGAAACTCGTTGAAGAGGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAG : AGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAG : AATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGAATTGCTCCT</gDNA_template>
            <first_frame> G  E  N  G  S  N  D  A  V  R  R  S  E  D  K  A  R  F  T  R  S  R  S  F  Q  D  R  A  G  L  Y  E  Y  V  R  *  L  R  P  A  Q  A  R  G  R  N  D  Q  A  T  S  S  R  Y  *  Y  W  S  H  L  T  R  Y  F  *  C  L  W  P  S  Y  *  *  N  T  H  R  Q   : G  Y  *  R  N  K  R  E  S  T  N  S  Y  Q  V  W  Y  P  F  *  R  W  K  *  G  H  L  W  *  T  C  V  C  K  G  L  L  *  G  Q  L  E  E  T  *  Y  R  L  H  *  S  L  L  C  S  S  H  R  Y  S  V  A  N  *  S  H   : D  G  R  T  E  E  T  R  *  R  G  K  I  K  Y  I  G  L  S  E  A  C  A  S  T  I  R  R  A  H  A  V  H  P  I  T  A  V  Q  M  E  W  S  L  W  T  R  D  L  E  E  E  V  V  P  T  C  R :   E  L  G  I  G  I  V  P  Y  S  P  L  G  R  G  F  L  S  A  G  A  K  L  I  E  S  L  A  D  D  D  F  R  K  :  N  F  P  R  F  K  P  E  N  F  E  H  N  K  Q  V  F  V  N  I  N  L  M  A  A  R  K  G  C  T  P  S  Q  L  A  L  A  W  I  L  H  Q  G  D  D  V  C  P  I  P  G  T  T  K  I  G  N  F  N  E  N  V  G  S  L  S  V  K  L  T  E  E  D  M  K  E  L  E  S  Y  T  S  G  D  V  V  K  G  E  R  H  L  Y  M  S  S  T  W  I  N  S  E  T  P  P  L  S  S  L  E  S  *  I  G  V  R  Q  V  I  S  I  *  L  L  M  M  L  K  L  F  E  V  I  V  A  P  M  W  D  P  P  K  L  H  *  W  K  T  Q  *  T  W  R  H  F  *  R  V  R  T  N  I  D  S  F  C  T  C  T  R  Y  L  F  M  K  R  D  V  C  Y  E  L  L   </first_frame>
            <second_frame>  E  K  M  E  V  T  T  P  F  D  V  P  R  I  K  L  G  S  Q  G  L  E  V  S  R  I  G  L  G  C  M  S  M  S  G  N  Y  G  P  P  K  P  E  A  E  M  I  K  L  L  H  H  A  I  D  T  G  V  T  L  L  D  T  S  D  V  Y  G  P  L  T  N  E  I  L  I  G  K  :  A  I  K  G  I  R  E  K  V  Q  I  A  T  K  F  G  I  R  F  E  D  G  N  R  G  I  C  G  E  P  A  Y  V  R  A  C  C  E  A  S  L  K  R  L  D  I  D  C  I  D  L  Y  Y  V  H  R  I  D  T  Q  L  P  I  E  V  T  :  M  G  E  L  K  K  L  V  E  E  V  K  *  N  I  *  V  Y  Q  R  L  V  H  Q  Q  S  E  G  P  M  L  F  I  Q  *  Q  L  S  R  W  N  G  H  C  G  L  E  I  W  R  K  K  *  F  L  L  A   : E  N  L  A  *  G  L  S  P  I  V  L  S  D  E  D  S  Y  Q  Q  G  Q  S  *  S  K  A  W  L  M  M  T  F  A  R :   I  S  L  G  S  S  Q  R  I  L  S  I  T  S  K  Y  L  *  I  S  I  *  W  L  Q  G  K  D  A  L  L  H  N  *  H  W  H  G  F  F  T  K  E  M  M  Y  A  L  Y  Q  A  L  R  R  L  E  T  S  T  K  T  *  D  P  Y  L  *  N  *  Q  R  K  T  *  K  N  S  N  R  I  P  L  A  M  L  S  K  V  R  D  I  Y  T  C  R  Q  L  G  *  I  Q  R  H  R  H  C  P  P  *  K  A  E  *  G  F  D  K  *  Y  L  F  S  F  L  *  C  S  N  S  L  K  L  L  L  H  P  C  G  I  L  Q  N  F  T  N  G  K  P  N  K  L  G  D  I  S  E  E  S  E  Q  I  *  I  V  F  V  H  V  L  D  T  Y  L  *  R  E  T  Y  V  M  N  C  S  </second_frame>
            <third_frame>   R  K  W  K  *  R  R  R  S  T  F  R  G  *  S  *  V  H  K  V  *  K  F  P  G  S  G  W  A  V  *  V  C  P  V  T  T  A  R  P  S  P  R  P  K  *  S  S  Y  F  I  T  L  L  I  L  E  S  P  Y  S  I  L  L  M  S  M  A  L  L  L  M  K  Y  S  S  A  R :   L  L  K  E  *  E  R  K  Y  K  *  L  P  S  L  V  S  V  L  K  M  E  I  G  A  F  V  V  N  L  R  M  *  G  L  V  V  R  P  A  *  R  D  L  I  S  T  A  L  I  S  I  M  F  I  A  S  I  L  S  C  Q  L  K  S  R :   W  E  N  *  R  N  S  L  K  R  *  N  K  I  Y  R  S  I  R  G  L  C  I  N  N  Q  K  G  P  C  C  S  S  N  N  S  C  P  D  G  M  V  I  V  D  *  R  S  G  G  R  S  S  S  Y  L  Q  :  R  T  W  H  R  D  C  P  L  *  S  S  R  T  R  I  L  I  S  R  G  K  A  D  R  K  L  G  *  *  *  L  S  Q   : E  F  P  *  V  Q  A  R  E  F  *  A  *  Q  A  S  I  C  E  Y  Q  S  N  G  C  K  E  R  M  H  S  F  T  I  S  I  G  M  D  S  S  P  R  R  *  C  M  P  Y  T  R  H  Y  E  D  W  K  L  Q  R  K  R  R  I  L  I  C  K  I  D  R  G  R  H  E  R  T  R  I  V  Y  L  W  R  C  C  Q  R  *  E  T  F  I  H  V  V  N  L  D  K  F  R  D  T  A  I  V  L  P  R  K  L  N  R  G  S  T  S  D  I  Y  L  A  S  Y  D  A  Q  T  L  *  S  Y  C  C  T  H  V  G  S  S  K  T  S  L  M  E  N  P  I  N  L  A  T  F  L  K  S  P  N  K  Y  R  *  F  L  Y  M  Y  S  I  L  I  Y  E  E  R  R  M  L  *  I  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28395" stop="28250"/>
                    <exon start="28170" stop="28068"/>
                    <exon start="26913" stop="26578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGKIKYIGLSEACASTIRRAHAVHPITAVQMEWSLWTRDLEEEVVPTCRELGIGIVPYSPLGRGFLSAGAKLIESLADDDFRKNFPRFKPENFEHNKQVFVNINLMAARKGCTPSQLALAWILHQGDDVCPIPGTTKIGNFNENVGSLSVKLTEEDMKELESYTSGDVVKGERHLYMSSTWINSETPPLSSLES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29685" stop="29452"/>
                    <exon start="29208" stop="29011"/>
                    <exon start="28421" stop="28383"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMEVTTPFDVPRIKLGSQGLEVSRIGLGCMSMSGNYGPPKPEAEMIKLLHHAIDTGVTLLDTSDVYGPLTNEILIGKAIKGIREKVQIATKFGIRFEDGNRGICGEPAYVRACCEASLKRLDIDCIDLYYVHRIDTQLPIEVTMGELKKLVEEVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29667" e_stop="28986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="29667" e_stop="28986" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29667" stop="28986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTC</gDNA_template>
            <first_frame> T  P  F  D  V  P  R  I  K  L  G  S  Q  G  L  E  V  S  R  I  G  L  G  C  M  S  M  S  G  N  Y  G  P  P  K  P  E  A  E  M  I  K  L  L  H  H  A  I  D  T  G  V  T  L  L  D  T  S  D  V  Y  G  P  L  T  N  E  I  L  I  G  K  V  K  M  S  F  F  S  N  K  *  L  Q  S  A  A  G  I  S  C  T  S  F  L  L  C  C  T  C  L  I  L  *  F  F  N  C  S  L  R  K  K  N  E  I  S  G  L  N  L  P  E  S  R  I  C  I  L  *  I  Y  V  F  Y  L  S  F  I  D  M  L  Y  V  H  V  N  L  P  D  F  M  *  A  I  K  G  I  R  E  K  V  Q  I  A  T  K  F  G  I  R  F  E  D  G  N  R  G  I  C  G  E  P  A  Y  V  R  A  C  C  E  A  S  L  K  R  L  D  I  D  C  I  D  L  Y  Y  V  H  R  I  D  T  Q  L  P  I  E  V  T  V  *  H  L  C  S  K  F  </first_frame>
            <second_frame>  R  R  S  T  F  R  G  *  S  *  V  H  K  V  *  K  F  P  G  S  G  W  A  V  *  V  C  P  V  T  T  A  R  P  S  P  R  P  K  *  S  S  Y  F  I  T  L  L  I  L  E  S  P  Y  S  I  L  L  M  S  M  A  L  L  L  M  K  Y  S  S  A  R  *  R  C  L  F  F  Q  T  S  N  C  K  V  L  Q  E  L  V  V  L  P  F  Y  F  V  V  H  V  *  S  C  S  F  S  I  V  H  *  E  K  K  M  K  F  Q  D  *  I  F  Q  R  V  E  S  V  S  Y  R  F  T  F  S  T  *  V  L  *  I  C  Y  M  F  M  L  I  Y  L  I  L  C  R  L  L  K  E  *  E  R  K  Y  K  *  L  P  S  L  V  S  V  L  K  M  E  I  G  A  F  V  V  N  L  R  M  *  G  L  V  V  R  P  A  *  R  D  L  I  S  T  A  L  I  S  I  M  F  I  A  S  I  L  S  C  Q  L  K  S  R  F  D  I  F  A  P  N  F </second_frame>
            <third_frame>   A  V  R  R  S  E  D  K  A  R  F  T  R  S  R  S  F  Q  D  R  A  G  L  Y  E  Y  V  R  *  L  R  P  A  Q  A  R  G  R  N  D  Q  A  T  S  S  R  Y  *  Y  W  S  H  L  T  R  Y  F  *  C  L  W  P  S  Y  *  *  N  T  H  R  Q  G  E  D  V  F  F  F  K  Q  V  I  A  K  C  C  R  N  *  L  Y  F  L  F  T  L  L  Y  M  S  D  P  V  V  F  Q  L  F  T  E  K  K  K  *  N  F  R  I  K  S  S  R  E  S  N  L  Y  P  I  D  L  R  F  L  P  E  F  Y  R  Y  V  I  C  S  C  *  S  T  *  F  Y  V  G  Y  *  R  N  K  R  E  S  T  N  S  Y  Q  V  W  Y  P  F  *  R  W  K  *  G  H  L  W  *  T  C  V  C  K  G  L  L  *  G  Q  L  E  E  T  *  Y  R  L  H  *  S  L  L  C  S  S  H  R  Y  S  V  A  N  *  S  H  G  L  T  S  L  L  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29667" stop="29422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPFDVPRIKLGSQGLEVSRIGLGCMSMSGNYGPPKPEAEMIKLLHHAIDTGVTLLDTSDVYGPLTNEILIGKVKMSFFSNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29208" stop="29005"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIKGIREKVQIATKFGIRFEDGNRGICGEPAYVRACCEASLKRLDIDCIDLYYVHRIDTQLPIEVTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33359" PGL_stop="32976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33359" e_stop="32976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="33359" e_stop="32976" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33359" stop="32976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAGGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAACTCTTAATGAATATCTGTAGCCTGTATGGGT</gDNA_template>
            <first_frame> I  T  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  R  G  G  W  D  *  G  L  Q  I  L  E  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N  S  *  *  I  S  V  A  C  M  G </first_frame>
            <second_frame>  *  R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  F  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K  T  L  N  E  Y  L  *  P  V  W   </second_frame>
            <third_frame>   N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  R  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  L  L  M  N  I  C  S  L  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0023H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="43496" PGL_stop="44203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43496" e_stop="44203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="43496" e_stop="44203" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43496" stop="44203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGACTATTTGATAAGAAAAACATTTCTATGTGATAAAGAATATGTGTTATTCTGTTTGGAGATTTTTTTTTTTTTGTAGTTTTGTACTCTATGAGAAATGTTAATGTGTCTCATTTTGTAGACTAAAAACTTTTGTGGTTTTATACTCTGGATAAATTGGACTATGCAATTGGTTTGAAGAATATAAAAACTTCACATAATAAGTCAATGTTGTACTTTTGATTTTCTATAAACTTCAATGTAATATAGAAATAAATTGTACAATTTCTTTTTGTCCTTATTGTTAGTATTTAAAATACTAAGTGGTATGTCTATTTATGATAGAGAAAAAAATACCAGTGAATTACAATTTGTGATTTTGTATTTCTATGGAATGAACTTTGACATTGTGTAAATATTGCCAAAGAGAATTGCAGCACTATAATTCTTTCGTAGAATAATATTTCCAACATTAAAATAGGTGGAAAAACTATTTTCAAATACTTGAAAAATATTTTTGAGATCACATTTGAAATGTGGGGGTTATTTGCTTATGATTAGACTTGGTGTCTAATTTAACTTTGGAGCAAAAGATATGAAATTTAATGATACTTTTGTATTATGTTATACCCACAAAATTCTTGGAGTATATTTGATATTGTGGTTGTTGAGTTTCTCTATTACTAGTATATAGTGTCACTAGTATGAAACATCCAAATTATATAT</gDNA_template>
            <first_frame> G  R  L  F  D  K  K  N  I  S  M  *  *  R  I  C  V  I  L  F  G  D  F  F  F  F  V  V  L  Y  S  M  R  N  V  N  V  S  H  F  V  D  *  K  L  L  W  F  Y  T  L  D  K  L  D  Y  A  I  G  L  K  N  I  K  T  S  H  N  K  S  M  L  Y  F  *  F  S  I  N  F  N  V  I  *  K  *  I  V  Q  F  L  F  V  L  I  V  S  I  *  N  T  K  W  Y  V  Y  L  *  *  R  K  K  Y  Q  *  I  T  I  C  D  F  V  F  L  W  N  E  L  *  H  C  V  N  I  A  K  E  N  C  S  T  I  I  L  S  *  N  N  I  S  N  I  K  I  G  G  K  T  I  F  K  Y  L  K  N  I  F  E  I  T  F  E  M  W  G  L  F  A  Y  D  *  T  W  C  L  I  *  L  W  S  K  R  Y  E  I  *  *  Y  F  C  I  M  L  Y  P  Q  N  S  W  S  I  F  D  I  V  V  V  E  F  L  Y  Y  *  Y  I  V  S  L  V  *  N  I  Q  I  I  Y </first_frame>
            <second_frame>  E  D  Y  L  I  R  K  T  F  L  C  D  K  E  Y  V  L  F  C  L  E  I  F  F  F  L  *  F  C  T  L  *  E  M  L  M  C  L  I  L  *  T  K  N  F  C  G  F  I  L  W  I  N  W  T  M  Q  L  V  *  R  I  *  K  L  H  I  I  S  Q  C  C  T  F  D  F  L  *  T  S  M  *  Y  R  N  K  L  Y  N  F  F  L  S  L  L  L  V  F  K  I  L  S  G  M  S  I  Y  D  R  E  K  N  T  S  E  L  Q  F  V  I  L  Y  F  Y  G  M  N  F  D  I  V  *  I  L  P  K  R  I  A  A  L  *  F  F  R  R  I  I  F  P  T  L  K  *  V  E  K  L  F  S  N  T  *  K  I  F  L  R  S  H  L  K  C  G  G  Y  L  L  M  I  R  L  G  V  *  F  N  F  G  A  K  D  M  K  F  N  D  T  F  V  L  C  Y  T  H  K  I  L  G  V  Y  L  I  L  W  L  L  S  F  S  I  T  S  I  *  C  H  *  Y  E  T  S  K  L  Y   </second_frame>
            <third_frame>   K  T  I  *  *  E  K  H  F  Y  V  I  K  N  M  C  Y  S  V  W  R  F  F  F  F  C  S  F  V  L  Y  E  K  C  *  C  V  S  F  C  R  L  K  T  F  V  V  L  Y  S  G  *  I  G  L  C  N  W  F  E  E  Y  K  N  F  T  *  *  V  N  V  V  L  L  I  F  Y  K  L  Q  C  N  I  E  I  N  C  T  I  S  F  C  P  Y  C  *  Y  L  K  Y  *  V  V  C  L  F  M  I  E  K  K  I  P  V  N  Y  N  L  *  F  C  I  S  M  E  *  T  L  T  L  C  K  Y  C  Q  R  E  L  Q  H  Y  N  S  F  V  E  *  Y  F  Q  H  *  N  R  W  K  N  Y  F  Q  I  L  E  K  Y  F  *  D  H  I  *  N  V  G  V  I  C  L  *  L  D  L  V  S  N  L  T  L  E  Q  K  I  *  N  L  M  I  L  L  Y  Y  V  I  P  T  K  F  L  E  Y  I  *  Y  C  G  C  *  V  S  L  L  L  V  Y  S  V  T  S  M  K  H  P  N  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0023H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65638" PGL_stop="66317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65638" e_stop="66317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="65638" e_stop="66317" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65638" stop="66317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGCTTGCACATGAAGTAAAGCACTTTTTCTCTTTTTGTACATGTTACCTTCTTTTCTCAACTTTAACCCTTTCCATATCATCTCTGATCTCTCCCTCCGAAAGACAAGAATATCAACTACACTCTACATACATCATTTGTTTGCTAAGTGCTGCTTACTAAAACAAATTCGTCTCTTTCTTGAACTGATATGCATACTCAGTTCACAAGTAGTAGACAATAATATCCAAATAAAATGGGCACTGTGAGAAAGCTAGTAGTAGAAGTAACTGAGGCACGGAATCTCCTCCCGAAGGATGGGCATGGCACTTCAAGTCCTTACGTAGTTGTTGATTTCTATGGACAGAGAAGGAAGACAAGGCCAGTCACTCGTGATCTCAGCCCCCAATGGAATGAAGTGTTGGAATTCAATGTCGGAAAACCCTCTGATGTTTTTGGGGACATGCTCGAGCTTGATGTCTATCATGACAAGTCCATTGGACCCACAACCAGGAATAATTTCCTCGGAAGGATCAGGTTGAGTGCCACACAGTTTGTCAAGAAAGGTGAAGAAGCATTGATCTATTACCCTTTGGAGAAGAAATATTGGTTCAGTTGGATTTCTGGTGAAATTGGTTTGAAAATTTATTTTGTCGAACAATTACTTGTTCCGGAAGTCAAACCGGAGCCTAAGCAAGCA</gDNA_template>
            <first_frame> G  A  C  T  *  S  K  A  L  F  L  F  L  Y  M  L  P  S  F  L  N  F  N  P  F  H  I  I  S  D  L  S  L  R  K  T  R  I  S  T  T  L  Y  I  H  H  L  F  A  K  C  C  L  L  K  Q  I  R  L  F  L  E  L  I  C  I  L  S  S  Q  V  V  D  N  N  I  Q  I  K  W  A  L  *  E  S  *  *  *  K  *  L  R  H  G  I  S  S  R  R  M  G  M  A  L  Q  V  L  T  *  L  L  I  S  M  D  R  E  G  R  Q  G  Q  S  L  V  I  S  A  P  N  G  M  K  C  W  N  S  M  S  E  N  P  L  M  F  L  G  T  C  S  S  L  M  S  I  M  T  S  P  L  D  P  Q  P  G  I  I  S  S  E  G  S  G  *  V  P  H  S  L  S  R  K  V  K  K  H  *  S  I  T  L  W  R  R  N  I  G  S  V  G  F  L  V  K  L  V  *  K  F  I  L  S  N  N  Y  L  F  R  K  S  N  R  S  L  S  K   </first_frame>
            <second_frame>  V  L  A  H  E  V  K  H  F  F  S  F  C  T  C  Y  L  L  F  S  T  L  T  L  S  I  S  S  L  I  S  P  S  E  R  Q  E  Y  Q  L  H  S  T  Y  I  I  C  L  L  S  A  A  Y  *  N  K  F  V  S  F  L  N  *  Y  A  Y  S  V  H  K  *  *  T  I  I  S  K  *  N  G  H  C  E  K  A  S  S  R  S  N  *  G  T  E  S  P  P  E  G  W  A  W  H  F  K  S  L  R  S  C  *  F  L  W  T  E  K  E  D  K  A  S  H  S  *  S  Q  P  P  M  E  *  S  V  G  I  Q  C  R  K  T  L  *  C  F  W  G  H  A  R  A  *  C  L  S  *  Q  V  H  W  T  H  N  Q  E  *  F  P  R  K  D  Q  V  E  C  H  T  V  C  Q  E  R  *  R  S  I  D  L  L  P  F  G  E  E  I  L  V  Q  L  D  F  W  *  N  W  F  E  N  L  F  C  R  T  I  T  C  S  G  S  Q  T  G  A  *  A  S  </second_frame>
            <third_frame>   C  L  H  M  K  *  S  T  F  S  L  F  V  H  V  T  F  F  S  Q  L  *  P  F  P  Y  H  L  *  S  L  P  P  K  D  K  N  I  N  Y  T  L  H  T  S  F  V  C  *  V  L  L  T  K  T  N  S  S  L  S  *  T  D  M  H  T  Q  F  T  S  S  R  Q  *  Y  P  N  K  M  G  T  V  R  K  L  V  V  E  V  T  E  A  R  N  L  L  P  K  D  G  H  G  T  S  S  P  Y  V  V  V  D  F  Y  G  Q  R  R  K  T  R  P  V  T  R  D  L  S  P  Q  W  N  E  V  L  E  F  N  V  G  K  P  S  D  V  F  G  D  M  L  E  L  D  V  Y  H  D  K  S  I  G  P  T  T  R  N  N  F  L  G  R  I  R  L  S  A  T  Q  F  V  K  K  G  E  E  A  L  I  Y  Y  P  L  E  K  K  Y  W  F  S  W  I  S  G  E  I  G  L  K  I  Y  F  V  E  Q  L  L  V  P  E  V  K  P  E  P  K  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65862" stop="66317"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPNKMGTVRKLVVEVTEARNLLPKDGHGTSSPYVVVDFYGQRRKTRPVTRDLSPQWNEVLEFNVGKPSDVFGDMLELDVYHDKSIGPTTRNNFLGRIRLSATQFVKKGEEALIYYPLEKKYWFSWISGEIGLKIYFVEQLLVPEVKPEPKQA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65653" stop="65886"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKALFLFLYMLPSFLNFNPFHIISDLSLRKTRISTTLYIHHLFAKCCLLKQIRLFLELICILSSQVVDNNIQIKWAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="67489" PGL_stop="67956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67489" e_stop="67956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67489" e_stop="67956" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67489" stop="67956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTTATCAC</gDNA_template>
            <first_frame> E  F  T  K  V  E  S  T  C  A  S  V  S  M  V  D  I  M  *  W  T  K  Q  H  M  F  V  V  I  T  V  Q  L  Q  G  N  Y  G  K  H  Q  L  G  L  S  N  *  G  *  L  D  V  R  I  C  C  P  *  K  A  K  G  L  R  M  L  M  Q  L  P  N  M  V  T  S  G  Y  A  L  V  P  Y  L  I  V  *  N  L  G  G  M  S  S  T  L  G  E  F  M  I  H  P  L  C  *  L  S  E  Y  L  M  A  A  R  K  *  H  L  N  Q  M  S  A  *  G  Q  I  F  G  L  V  R  C  V  S  V  F  L  H  *  Q  Q  V  K  C  T  G  I  L  S  H  Y  F  C  Y  H </first_frame>
            <second_frame>  N  L  Q  R  *  S  P  L  A  P  L  F  R  W  W  I  S  C  D  G  R  S  S  T  C  L  *  *  L  P  S  N  C  K  A  T  M  E  S  T  N  W  D  C  R  I  R  D  N  W  M  *  E  S  V  A  H  E  R  Q  R  V  Y  G  C  L  C  S  C  Q  I  W  *  Q  V  G  T  H  S  Y  H  I  *  *  F  R  T  *  V  E  *  A  V  H  L  E  S  L  *  S  I  H  C  V  D  Y  R  S  I  *  W  L  L  G  S  S  I  *  I  R  *  V  H  E  A  R  F  S  D  W  *  G  A  C  P  Y  F  Y  I  D  N  R  *  S  V  Q  E  Y  F  P  I  T  F  V  I   </second_frame>
            <third_frame>   I  Y  K  G  R  V  H  L  R  L  C  F  D  G  G  Y  H  V  M  D  E  A  A  H  V  C  S  D  Y  R  P  T  A  R  Q  L  W  K  A  P  I  G  T  V  E  L  G  I  I  G  C  K  N  L  L  P  M  K  G  K  G  S  T  D  A  Y  A  V  A  K  Y  G  N  K  W  V  R  T  R  T  I  S  D  S  L  E  P  R  W  N  E  Q  Y  T  W  R  V  Y  D  P  S  T  V  L  T  I  G  V  F  D  G  C  S  E  V  A  F  E  S  D  E  C  M  R  P  D  F  R  I  G  K  V  R  V  R  I  S  T  L  T  T  G  K  V  Y  R  N  T  F  P  L  L  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67491" stop="67955"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKAPIGTVELGIIGCKNLLPMKGKGSTDAYAVAKYGNKWVRTRTISDSLEPRWNEQYTWRVYDPSTVLTIGVFDGCSEVAFESDECMRPDFRIGKVRVRISTLTTGKVYRNTFPLLLLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69036" PGL_stop="68443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69036" e_stop="68443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="69036" e_stop="68443" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69036" stop="68443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68815" stop="68701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGTAAAGTAT</gDNA_template>
            <first_frame> F  L  N  D  N  S  Y  L  W  T  N  T  V  M  E  I  N  I  E  I  H  S  D  L  S  E  M  T  Y  I  E  M  K  K  K  N  F  *  T  I  I  T  *  K  *  A  N  A  Q  H  K  R  E  Y  I  Y  *  Y  L  N  R  T  R  A  F  C  L  K  V  K  A  T  F  *  R  N  S  K  Q  G  K  A  F  Y  P  *  I  W  D  G  G  G  S  R  I  Q  R  P  *  T  P  F  *  M  V  P  S  I  K  *  M  P  R  Q  S  T  A  Q  *  I  S  L  W  L  E  G  H  A  K  L  P  M  L  A  L  S  P  L  V  L  R  N  L  P  R  L  S  E  P  V  P  Q  A  C  A  V  Y  H  I  W  L  V  P  I  R  *  V  *  C  K  A  L  H  Q  T  L  H  Q  A  H  L  C  L  V  T  L  P  V  R  S  L  D  Q  S  G  V  K  Y </first_frame>
            <second_frame>  F  S  M  I  I  V  T  Y  G  L  I  Q  L  W  K  L  I  L  K  Y  I  V  T  F  L  R  *  H  I  *  K  *  K  K  K  T  S  E  L  L  *  H  K  N  R  L  M  H  S  T  S  A  S  I  F  T  S  T  *  I  E  L  E  H  S  V  *  K  *  R  Q  P  S  K  E  I  Q  S  R  G  R  H  S  I  P  K  Y  G  M  A  E  V  V  E  S  K  G  H  R  H  H  F  R  W  Y  Q  V  *  N  E  C  H  D  K  A  Q  P  N  K  Y  P  C  G  S  R  V  T  P  S  Y  Q  C  L  H  S  L  P  L  C  C  E  I  S  Q  D  C  L  N  P  F  P  K  H  A  Q  F  I  I  S  G  S  Y  Q  F  V  R  S  S  A  R  H  C  I  K  L  F  I  K  L  I  S  V  *  *  L  C  Q  *  D  L  W  I  K  V  G  *  S   </second_frame>
            <third_frame>   S  Q  *  *  *  L  L  M  D  *  Y  S  Y  G  N  *  Y  *  N  T  *  *  P  F  *  D  D  I  Y  R  N  E  K  K  K  L  L  N  Y  Y  N  I  K  I  G  *  C  T  A  Q  A  R  V  Y  L  L  V  L  K  *  N  *  S  I  L  S  E  S  E  G  N  L  L  K  K  F  K  A  G  E  G  I  L  S  L  N  M  G  W  R  R  *  *  N  P  K  A  I  D  T  I  L  D  G  T  K  Y  K  M  N  A  T  T  K  H  S  P  I  N  I  P  V  A  R  G  S  R  Q  V  T  N  A  C  T  L  S  P  C  V  A  K  S  P  K  I  V  *  T  R  S  P  S  M  R  S  L  S  Y  L  A  R  T  N  S  L  G  L  V  Q  G  I  A  S  N  S  S  S  S  S  S  L  S  S  D  S  A  S  E  I  F  G  S  K  W  G  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68711" stop="68487"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NECHDKAQPNKYPCGSRVTPSYQCLHSLPLCCEISQDCLNPFPKHAQFIISGSYQFVRSSARHCIKLFIKLISV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="76960" PGL_stop="76279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76960" e_stop="76279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="76960" e_stop="76279" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76960" stop="76279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTC</gDNA_template>
            <first_frame> T  P  F  D  V  P  R  I  K  L  G  S  Q  G  L  E  V  S  R  I  G  L  G  C  M  S  M  S  G  N  Y  G  P  P  K  P  E  A  E  M  I  K  L  L  H  H  A  I  D  T  G  V  T  L  L  D  T  S  D  V  Y  G  P  L  T  N  E  I  L  I  G  K  V  K  M  S  F  F  S  N  K  *  L  Q  S  A  A  G  I  S  C  T  S  F  L  L  C  C  T  C  L  I  L  *  F  F  N  C  S  L  R  K  K  N  E  I  S  G  L  N  L  P  E  S  R  I  C  I  L  *  I  Y  V  F  Y  L  S  F  I  D  M  L  Y  V  H  V  N  L  P  D  F  M  *  A  I  K  G  I  R  E  K  V  Q  I  A  T  K  F  G  I  R  F  E  D  G  N  R  G  I  C  G  E  P  A  Y  V  R  A  C  C  E  A  S  L  K  R  L  D  I  D  C  I  D  L  Y  Y  V  H  R  I  D  T  Q  L  P  I  E  V  T  V  *  H  L  C  S  K  F  </first_frame>
            <second_frame>  R  R  S  T  F  R  G  *  S  *  V  H  K  V  *  K  F  P  G  S  G  W  A  V  *  V  C  P  V  T  T  A  R  P  S  P  R  P  K  *  S  S  Y  F  I  T  L  L  I  L  E  S  P  Y  S  I  L  L  M  S  M  A  L  L  L  M  K  Y  S  S  A  R  *  R  C  L  F  F  Q  T  S  N  C  K  V  L  Q  E  L  V  V  L  P  F  Y  F  V  V  H  V  *  S  C  S  F  S  I  V  H  *  E  K  K  M  K  F  Q  D  *  I  F  Q  R  V  E  S  V  S  Y  R  F  T  F  S  T  *  V  L  *  I  C  Y  M  F  M  L  I  Y  L  I  L  C  R  L  L  K  E  *  E  R  K  Y  K  *  L  P  S  L  V  S  V  L  K  M  E  I  G  A  F  V  V  N  L  R  M  *  G  L  V  V  R  P  A  *  R  D  L  I  S  T  A  L  I  S  I  M  F  I  A  S  I  L  S  C  Q  L  K  S  R  F  D  I  F  A  P  N  F </second_frame>
            <third_frame>   A  V  R  R  S  E  D  K  A  R  F  T  R  S  R  S  F  Q  D  R  A  G  L  Y  E  Y  V  R  *  L  R  P  A  Q  A  R  G  R  N  D  Q  A  T  S  S  R  Y  *  Y  W  S  H  L  T  R  Y  F  *  C  L  W  P  S  Y  *  *  N  T  H  R  Q  G  E  D  V  F  F  F  K  Q  V  I  A  K  C  C  R  N  *  L  Y  F  L  F  T  L  L  Y  M  S  D  P  V  V  F  Q  L  F  T  E  K  K  K  *  N  F  R  I  K  S  S  R  E  S  N  L  Y  P  I  D  L  R  F  L  P  E  F  Y  R  Y  V  I  C  S  C  *  S  T  *  F  Y  V  G  Y  *  R  N  K  R  E  S  T  N  S  Y  Q  V  W  Y  P  F  *  R  W  K  *  G  H  L  W  *  T  C  V  C  K  G  L  L  *  G  Q  L  E  E  T  *  Y  R  L  H  *  S  L  L  C  S  S  H  R  Y  S  V  A  N  *  S  H  G  L  T  S  L  L  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76960" stop="76715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPFDVPRIKLGSQGLEVSRIGLGCMSMSGNYGPPKPEAEMIKLLHHAIDTGVTLLDTSDVYGPLTNEILIGKVKMSFFSNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76501" stop="76298"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIKGIREKVQIATKFGIRFEDGNRGICGEPAYVRACCEASLKRLDIDCIDLYYVHRIDTQLPIEVTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="104752" PGL_stop="101842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104752" e_stop="104234"/>
            <exon e_start="103515" e_stop="101842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104752" e_stop="104234" e_length="519"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.929">
            <gDNA_intron_boundary i_start="104233" i_stop="103516" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="103515" e_stop="101842" e_length="1674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104752" stop="104234"/>
              <exon start="103515" stop="101842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCACAACATTTTTCTCTCTCTTTCTCCTAATCATCACCGTCGCCGGACAAACAACTCCGATGGCTGAAGCTCCGGCACCGGCAGCCGACGACTGTAACGGTATATTCTTGCAGTATGTGTTTAATTCCGGATCTAAAATCAAACCCACTTTGAAAACTCGTCAACCCTACAAGTTTCAGTCTATTCTCAGTATAACTAACAACGGACTTGAGGAACTTAAGTTATGGAGGGTTTTTGTTGGGTTTCAACATGATGAGATTTTGGTTTCTGCTTCTAACGCTCTGCTTGCTGATGGGGAATCATTTCCTGCTTTAGTTGGTAATGGTACTGTTTTTGCTGGATTTCCGGCTGCCGATCTTAAGACAGCTGTGGAAACTGCTGGAGATACTACACAGACGAGTGTTCAAATCAAAATTGTGGGTACCCAGTTTGGAGTTGGCTCTCCTAATGTACCTATGCCCTCCAATATCTCTTTGGAAAATGATGGGTTTATTTGCCCTAAACCCTCTATGCAAG : GAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCAGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</gDNA_template>
            <first_frame> S  P  Q  H  F  S  L  S  F  S  *  S  S  P  S  P  D  K  Q  L  R  W  L  K  L  R  H  R  Q  P  T  T  V  T  V  Y  S  C  S  M  C  L  I  P  D  L  K  S  N  P  L  *  K  L  V  N  P  T  S  F  S  L  F  S  V  *  L  T  T  D  L  R  N  L  S  Y  G  G  F  L  L  G  F  N  M  M  R  F  W  F  L  L  L  T  L  C  L  L  M  G  N  H  F  L  L  *  L  V  M  V  L  F  L  L  D  F  R  L  P  I  L  R  Q  L  W  K  L  L  E  I  L  H  R  R  V  F  K  S  K  L  W  V  P  S  L  E  L  A  L  L  M  Y  L  C  P  P  I  S  L  W  K  M  M  G  L  F  A  L  N  P  L  C  K  :  E  R  V  L  C  K  Y  A  V  L  K  T  K  I  S  R  Q  I  *  R  W  V  R  N  L  V  H  A  K  M  G  I  L  Q  L  C  M  I  S  *  E  H  M  I  Q  I  T  G  L  R  L  P  L  Q  T  I  I  P  L  V  A  L  I  T  G  N  *  V  G  T  G  *  R  M  S  L  F  G  K  *  K  A  H  I  P  L  L  L  I  L  L  S  V  F  L  G  H  R  Q  N  F  I  K  T  L  T  F  P  L  V  *  T  V  R  E  G  R  H  *  L  I  C  R  W  R  R  P  M  I  Q  S  W  E  *  Y  L  F  V  V  G  M  G  Q  S  C  H  L  L  W  T  Q  A  S  L  F  Q  H  S  R  *  M  S  L  K  C  L  Q  I  L  I  D  P  H  S  L  L  H  R  I  G  R  S  K  A  D  *  I  Q  I  T  S  V  D  L  Q  S  V  *  A  P  P  K  S  L  I  L  V  D  C  Y  L  L  H  Q  Y  L  L  A  G  K  L  Y  A  T  S  P  N  Q  K  E  L  A  P  D  A  V  F  L  S  L  L  S  T  M  N  L  S  F  L  V  Q  H  A  P  V  V  V  L  P  I  L  L  V  H  V  A  R  K  P  Q  L  F  S  S  H  L  R  L  F  W  F  H  L  T  I  E  P  R  C  P  L  P  G  L  K  L  I  I  F  Q  F  Q  T  H  C  H  V  E  I  T  V  V  *  A  S  T  G  I  C  S  Q  T  I  G  V  D  G  L  P  G  S  P  S  S  T  G  R  M  L  L  L  L  I  G  S  L  R  W  N  W  T  K  Q  R  L  V  L  T  Q  C  I  H  S  M  E  L  C  *  M  G  L  I  I  P  Y  S  C  R  A  F  Q  A  *  T  I  *  *  Q  K  Q  M  E  L  I  Q  R  K  I  P  E  Y  L  G  N  N  N  Q  *  S  H  S  Q  R  R  I  S  Q  T  S  T  L  L  L  V  M  G  F  Q  Q  N  Y  T  S  M  E  K  S  A  H  C  Q  S  Y  S  Q  Q  A  V  H  L  E  Y  L  H  S  L  S  L  L  P  F  L  Q  Q  L  W  F  L  C  W  C  D  N  S  S  E  L  W  R  F  L  F  V  S  Y  L  P  I  D  S  F  F  S  V  C  Y  Q  V  L  M  L  V  T  N  L  S  I  S  L  S  D  Y  V  F  R  D  V  G  F  S  A  S  F  D  L  *  L  F  I  T  L  W  N  S  H  S  R  Q  Y  L  T  L  K  L  I  P  V  I  L  A  D  K  I  R  I  P  Q  F </first_frame>
            <second_frame>  H  H  N  I  F  L  S  L  S  P  N  H  H  R  R  R  T  N  N  S  D  G  *  S  S  G  T  G  S  R  R  L  *  R  Y  I  L  A  V  C  V  *  F  R  I  *  N  Q  T  H  F  E  N  S  S  T  L  Q  V  S  V  Y  S  Q  Y  N  *  Q  R  T  *  G  T  *  V  M  E  G  F  C  W  V  S  T  *  *  D  F  G  F  C  F  *  R  S  A  C  *  W  G  I  I  S  C  F  S  W  *  W  Y  C  F  C  W  I  S  G  C  R  S  *  D  S  C  G  N  C  W  R  Y  Y  T  D  E  C  S  N  Q  N  C  G  Y  P  V  W  S  W  L  S  *  C  T  Y  A  L  Q  Y  L  F  G  K  *  W  V  Y  L  P  *  T  L  Y  A  R :   K  E  C  Y  A  S  M  L  Y  *  R  R  K  F  Q  D  K  F  D  V  G  *  E  I  *  S  T  P  R  W  G  S  Y  N  Y  V  *  Y  P  K  N  I  *  F  K  L  L  G  S  G  Y  H  C  K  P  *  S  P  W  S  P  *  *  L  E  T  K  L  G  L  D  E  G  *  V  Y  L  G  N  E  R  R  I  S  L  C  C  *  Y  F  *  V  C  F  W  A  T  G  K  I  L  S  K  P  *  L  F  H  W  F  E  L  S  E  K  A  D  T  N  *  S  A  A  G  E  D  Q  *  Y  K  V  G  N  D  T  F  L  L  S  E  W  D  N  L  A  T  C  Y  G  P  K  Q  V  C  F  S  I  P  D  E  C  L  *  N  A  S  R  S  *  S  I  L  I  H  S  S  T  E  L  E  D  R  R  Q  T  E  S  R  L  Q  V  W  T  S  S  P  C  K  P  H  P  S  P  *  S  *  W  I  V  T  C  Y  I  S  I  C  *  L  A  S  C  M  Q  H  H  P  T  K  R  S  *  P  Q  M  L  C  F  F  L  C  F  L  Q  *  I  Y  H  S  L  S  N  M  R  L  W  L  S  F  Q  Y  C  S  Y  M  *  H  E  S  P  S  S  S  P  P  I  S  G  S  S  G  S  I  *  Q  *  N  Q  D  V  P  C  L  G  *  N  *  S  S  S  S  F  K  P  I  A  M  W  R  *  L  W  C  K  H  Q  L  A  F  V  H  R  L  *  G  W  M  V  C  Q  D  H  H  L  Q  L  G  G  C  C  F  C  *  L  V  H  C  G  G  I  G  Q  S  S  G  W  F  *  R  S  V  F  I  Q  W  N  Y  V  R  W  G  *  *  Y  H  I  H  A  G  P  S  R  L  E  L  Y  S  S  R  S  R  W  S  *  S  S  E  R  S  P  S  T  W  E  T  T  I  S  N  L  I  H  K  E  E  Y  P  K  H  Q  R  C  C  W  *  W  V  S  N  K  I  I  L  Q  W  R  R  V  L  I  A  K  A  T  P  N  K  Q  F  I  *  N  I  F  I  H  C  H  Y  F  H  S  C  S  S  C  G  F  Y  V  G  A  T  I  A  V  S  C  G  V  F  S  S  F  H  T  C  Q  L  I  H  S  L  A  S  A  T  R  F  *  C  W  *  P  I  F  Q  S  V  C  R  I  M  Y  S  G  T  W  V  F  R  R  V  L  I  C  N  Y  L  L  H  S  G  I  L  I  P  D  N  I  *  L  *  S  *  Y  L  L  Y  *  Q  I  R  *  E  Y  L  S   </second_frame>
            <third_frame>   T  T  T  F  F  S  L  F  L  L  I  I  T  V  A  G  Q  T  T  P  M  A  E  A  P  A  P  A  A  D  D  C  N  G  I  F  L  Q  Y  V  F  N  S  G  S  K  I  K  P  T  L  K  T  R  Q  P  Y  K  F  Q  S  I  L  S  I  T  N  N  G  L  E  E  L  K  L  W  R  V  F  V  G  F  Q  H  D  E  I  L  V  S  A  S  N  A  L  L  A  D  G  E  S  F  P  A  L  V  G  N  G  T  V  F  A  G  F  P  A  A  D  L  K  T  A  V  E  T  A  G  D  T  T  Q  T  S  V  Q  I  K  I  V  G  T  Q  F  G  V  G  S  P  N  V  P  M  P  S  N  I  S  L  E  N  D  G  F  I  C  P  K  P  S  M  Q   : G  K  S  V  M  Q  V  C  C  I  K  D  E  N  F  K  T  N  L  T  L  G  E  K  F  S  P  R  Q  D  G  D  L  T  I  M  Y  D  I  L  R  T  Y  D  S  N  Y  W  A  Q  V  T  I  A  N  H  N  P  L  G  R  L  D  N  W  K  L  S  W  D  W  M  K  D  E  F  I  W  E  M  K  G  A  Y  P  S  V  V  D  T  S  E  C  V  F  G  P  Q  A  K  F  Y  Q  N  L  D  F  S  T  G  L  N  C  Q  R  R  P  T  L  I  D  L  P  L  E  K  T  N  D  T  K  L  G  M  I  P  F  C  C  R  N  G  T  I  L  P  P  A  M  D  P  S  K  S  V  S  A  F  Q  M  N  V  F  K  M  P  P  D  L  N  R  S  S  F  T  P  P  Q  N  W  K  I  E  G  R  L  N  P  D  Y  K  C  G  P  P  V  R  V  S  P  T  Q  V  P  D  P  S  G  L  L  P  A  T  S  V  F  A  S  W  Q  V  V  C  N  I  T  Q  P  K  G  A  S  P  R  C  C  V  S  F  S  A  F  Y  N  E  S  I  I  P  C  P  T  C  A  C  G  C  P  S  N  T  A  R  T  C  S  T  K  A  P  A  L  L  L  P  S  Q  A  L  L  V  P  F  D  N  R  T  K  M  S  L  A  W  A  E  I  N  H  L  P  V  S  N  P  L  P  C  G  D  N  C  G  V  S  I  N  W  H  L  F  T  D  Y  R  G  G  W  S  A  R  I  T  I  F  N  W  E  D  A  A  F  A  D  W  F  T  A  V  E  L  D  K  A  A  A  G  F  D  A  V  Y  S  F  N  G  T  M  L  D  G  V  N  N  T  I  F  M  Q  G  L  P  G  L  N  Y  I  V  A  E  A  D  G  A  N  P  A  K  D  P  R  V  P  G  K  Q  Q  S  V  I  S  F  T  K  K  N  I  P  N  I  N  V  A  A  G  D  G  F  P  T  K  L  Y  F  N  G  E  E  C  S  L  P  K  L  L  P  T  S  S  S  S  R  I  S  S  F  T  V  T  T  S  I  L  A  A  V  V  V  F  M  L  V  R  Q  *  Q  *  A  V  A  F  S  L  R  F  I  P  A  N  *  F  I  L  *  R  L  L  P  G  F  N  A  G  D  Q  S  F  N  Q  F  V  G  L  C  I  Q  G  R  G  F  F  G  E  F  *  F  V  T  I  Y  Y  T  L  E  F  S  F  Q  T  I  F  D  F  K  V  N  T  C  Y  I  S  R  *  D  K  N  T  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104750" stop="104234"/>
                    <exon start="103515" stop="102095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1935</number_coding_nucleotides>
                  <number_encoded_amino_acids>645</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTFFSLFLLIITVAGQTTPMAEAPAPAADDCNGIFLQYVFNSGSKIKPTLKTRQPYKFQSILSITNNGLEELKLWRVFVGFQHDEILVSASNALLADGESFPALVGNGTVFAGFPAADLKTAVETAGDTTQTSVQIKIVGTQFGVGSPNVPMPSNISLENDGFICPKPSMQGKSVMQVCCIKDENFKTNLTLGEKFSPRQDGDLTIMYDILRTYDSNYWAQVTIANHNPLGRLDNWKLSWDWMKDEFIWEMKGAYPSVVDTSECVFGPQAKFYQNLDFSTGLNCQRRPTLIDLPLEKTNDTKLGMIPFCCRNGTILPPAMDPSKSVSAFQMNVFKMPPDLNRSSFTPPQNWKIEGRLNPDYKCGPPVRVSPTQVPDPSGLLPATSVFASWQVVCNITQPKGASPRCCVSFSAFYNESIIPCPTCACGCPSNTARTCSTKAPALLLPSQALLVPFDNRTKMSLAWAEINHLPVSNPLPCGDNCGVSINWHLFTDYRGGWSARITIFNWEDAAFADWFTAVELDKAAAGFDAVYSFNGTMLDGVNNTIFMQGLPGLNYIVAEADGANPAKDPRVPGKQQSVISFTKKNIPNINVAAGDGFPTKLYFNGEECSLPKLLPTSSSSRISSFTVTTSILAAVVVFMLVRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="133165" PGL_stop="134050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133165" e_stop="134050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="133165" e_stop="134050" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133165" stop="134050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTTCCCATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTCTTTACGGTGTTCATTGCGTTGTTGATTTTCCATTGAAATTAATGGGGGGAAATTAAATAAAGTGTCTGGAATCGCACAGATCTACAAATGAGAGCAAAGATATTGAAGAAAAATTGGAAAGCTGTCTTGTTTCTCTCATCTTCTGTAAAATTCTTGACCATTCTTCTTATTATATTCTCCTGTAATTTTAGTTTAACTTAAATTCATATTCGTATAGAATGTAACAAAACTTTAGTCATTTTTGTAACAATTATAAACTCAACTTCTCATTCATATTCTATATATTTTCACTGCAATTTTATTGCTTTT</gDNA_template>
            <first_frame> F  P  S  H  F  H  F  P  F  S  I  F  H  *  H  Y  T  L  N  S  F  F  S  T  Q  N  F  I  K  N  G  S  D  V  S  F  F  D  P  H  N  H  Y  D  D  N  G  Y  A  K  *  G  *  F  G  K  C  Q  *  N  N  L  G  R  F  K  V  S  D  *  M  Y  N  V  C  R  M  *  Q  P  L  R  H  P  I  S  A  A  A  S  A  A  V  A  S  S  T  A  F  Y  L  L  *  L  S  S  S  T  L  S  S  *  F  R  G  K  L  L  L  L  S  T  A  T  T  A  F  L  L  R  R  R  R  R  R  *  L  L  L  F  T  T  S  T  L  P  K  L  P  F  W  T  Y  S  S  T  S  E  S  N  C  S  V  F  S  I  L  L  L  Q  S  S  T  A  F  T  V  C  C  Y  *  A  H  *  F  F  T  Q  I  F  Y  F  L  Y  G  V  H  C  V  V  D  F  P  L  K  L  M  G  G  N  *  I  K  C  L  E  S  H  R  S  T  N  E  S  K  D  I  E  E  K  L  E  S  C  L  V  S  L  I  F  C  K  I  L  D  H  S  S  Y  Y  I  L  L  *  F  *  F  N  L  N  S  Y  S  Y  R  M  *  Q  N  F  S  H  F  C  N  N  Y  K  L  N  F  S  F  I  F  Y  I  F  S  L  Q  F  Y  C  F  </first_frame>
            <second_frame>  S  L  P  I  S  I  F  H  F  P  F  F  T  N  T  T  L  S  T  H  S  S  L  L  K  I  L  S  K  M  G  V  M  L  A  F  S  I  L  I  I  T  M  M  I  T  G  M  Q  N  E  G  N  L  V  N  A  N  E  T  T  W  A  G  S  K  Y  Q  I  E  C  T  M  C  A  A  C  D  N  P  C  A  T  P  S  P  P  P  P  Q  P  P  S  P  P  P  P  P  S  T  S  Y  N  C  P  P  P  P  S  P  P  S  S  G  G  N  Y  Y  Y  S  P  P  P  P  P  P  S  S  S  G  G  G  G  G  G  N  Y  Y  Y  S  P  P  P  P  Y  Q  N  Y  P  S  G  P  T  P  P  P  P  N  P  I  V  P  Y  F  P  F  Y  F  Y  N  P  P  P  P  S  Q  S  A  A  I  K  L  T  D  F  S  P  K  S  S  I  F  F  T  V  F  I  A  L  L  I  F  H  *  N  *  W  G  E  I  K  *  S  V  W  N  R  T  D  L  Q  M  R  A  K  I  L  K  K  N  W  K  A  V  L  F  L  S  S  S  V  K  F  L  T  I  L  L  I  I  F  S  C  N  F  S  L  T  *  I  H  I  R  I  E  C  N  K  T  L  V  I  F  V  T  I  I  N  S  T  S  H  S  Y  S  I  Y  F  H  C  N  F  I  A  F </second_frame>
            <third_frame>   P  F  P  F  P  F  S  I  F  H  F  S  L  T  L  H  S  Q  L  I  L  L  Y  S  K  F  Y  Q  K  W  E  *  C  *  L  F  R  S  S  *  S  L  *  *  *  R  V  C  K  M  R  V  I  W  *  M  P  M  K  Q  L  G  Q  V  Q  S  I  R  L  N  V  Q  C  V  P  H  V  T  T  L  A  P  P  H  L  R  R  R  L  S  R  R  R  L  L  H  R  L  L  P  L  I  I  V  L  L  H  P  L  L  L  V  P  G  E  I  T  T  T  L  H  R  H  H  R  L  P  P  P  A  A  A  A  A  V  I  T  T  I  H  H  L  H  L  T  K  I  T  L  L  D  L  L  L  H  L  R  I  Q  L  F  R  I  F  H  S  T  F  T  I  L  H  R  L  H  S  L  L  L  L  S  S  L  I  F  H  P  N  L  L  F  S  L  R  C  S  L  R  C  *  F  S  I  E  I  N  G  G  K  L  N  K  V  S  G  I  A  Q  I  Y  K  *  E  Q  R  Y  *  R  K  I  G  K  L  S  C  F  S  H  L  L  *  N  S  *  P  F  F  L  L  Y  S  P  V  I  L  V  *  L  K  F  I  F  V  *  N  V  T  K  L  *  S  F  L  *  Q  L  *  T  Q  L  L  I  H  I  L  Y  I  F  T  A  I  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133166" stop="133777"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPISIFHFPFFTNTTLSTHSSLLKILSKMGVMLAFSILIITMMITGMQNEGNLVNANETTWAGSKYQIECTMCAACDNPCATPSPPPPQPPSPPPPPSTSYNCPPPPSPPSSGGNYYYSPPPPPPSSSGGGGGGNYYYSPPPPYQNYPSGPTPPPPNPIVPYFPFYFYNPPPPSQSAAIKLTDFSPKSSIFFTVFIALLIFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 29296 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2092 bytes was the average size of a spliced alignment
$ 18712 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1559 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 37 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:36:24
-->
