<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:25:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747521" ref_strand="+" ref_description="SGN-E747521 [GI|37903682]">
      <seq>atggctcaaacatcctcttcctctccttctcttaaagcttcatcaagtgttaccaatgatcttcaagcaactataatggctctaatactaattgttactattgggtattttctacttttgatagtaacaccaactaatatgtatagacaaatatggacacccaagattaaagctcacactaccaactccacatactttggagctcaaggaaggactttgttgatgaacacatttcctctcatatttattgctgtcttgggatgtgtatacctccatttatggaagaaatccaataataaaaacatcaacagatttgagaagaaacaaaagttggctatatggaggaggccaataatcatgaaggggctgggaattgtatcaagaatagagcttggtttttttgtgatgtttattgcactcttagtttggacttttgcttcttacttgcacattatttttcccactattacaccaaaatccgtagcaaacagtggagaaaaagtatgggaagccaagttggaagattcagggctaagattgggacttgttggaaatatatgcttaacatttctatttgttccagtcacaagaggctcatctgtgttacaagtatttggtttgacatcagaagctagtgttaaatatcatatatggcttggccatattgtaatgactcttttttctgctcatggcatttgttacattatctattgggcttccactcatcaattgtctgagatgctgaaatggggaaaaactgatatatcaaatttggctggtgaattggcattgctttctggattggtgttgtggatagcaacatttcctaaaattaggagaaagatgtttgaactcttcttctacactcatcatttctacattctctttgtcgtcttcttcgtcttccatgttggtgtttcttacgcttgcatcatgcttcctggtttcttcctcttcatggttggtcgattcttgagattcttacagtcacgatcaaatgttcgtttagtctctgctcgtgttctgccatgtgaaactcttgaactcaatttctccaagactaaaggtttaagttacacaccaactagcatcatgtttgtgaatgtacctagcatttcaaaattgcaatggcatccttttaccatcacttcaagtagtaatttggagccagagaaaatcagtgttgccattaagggtgaaggaagttggtccaaaaaactctaccagatgatctcctcccctaattctgtcgatcgtcttaacgtctctgttgaaggaccttatggacctccttccacacattttctaaggcatgatttattggttatgataagtggaggaagtggaattactcctttcatttccatcattagggagctaattcatacaagtgagtcacaaaaatgcaagacaccagaaatcctacttattagtgtgttcaagaattcggaagatctcaccatgttggaccttctccttcctatatctggtgctccatcagaaacttgtaaactggggctacaaatcgaggcttttgtaacgagagaaaagcaaccagtatcgacagaagacaagaagaatgtgaggactatatggttcaagcccaacccatctgataagcctatcactccaattcttggacaaaacaattggctctggcttggtgctatcatatcatgttccttcctcattttcctgatttccttgggggtcttgaatagatattacatatatccaatcgacaataatactaatgacatattttcgtatccaataaaggcggtgttgaatatgctaatcatttgcatatctatagtcatcacaagtagtgctgcatttgtttggaacaagagacagagtgggactgatgcaaaacagattcagaacatggaaggtgcaactcctatggcttcgcctaattcttggttctataatgccgatagggagatggaaagtttgccccaacaatcactttttcaatcaactaatctccattttggtgaaaggcctgacctcaaaagaatattgtttgagaggaaagaatcaagtgttggagttttagtgtgtggcccaaaaaggatgagacatgaagttgctaacatatgttcatctggtttagcatccaatcttcattttgagtccatcagtttcagttggtgagttagagaatataatgcattctatgcaatggagaaaaataagatggaagtttttttgtttgtttgtgtgcttatgctttggttgattgaattttgcatgtaacatgcttcctttgtactgagtaaatgtaaaaagatacagttaattctgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="18279" stop="14514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18018" g_stop="17811" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17810" i_stop="17608" i_length="203">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17607" g_stop="17505" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17504" i_stop="17367" i_length="138">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17366" g_stop="17175" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="503" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17174" i_stop="17077" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17076" g_stop="16842" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="738" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16841" i_stop="16755" i_length="87">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16754" g_stop="16427" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="1066" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16426" i_stop="16337" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16336" g_stop="16093" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1067" r_stop="1310" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16092" i_stop="15987" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15986" g_stop="15277" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1311" r_stop="2020" r_length="710" r_score="0.999"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15276" i_stop="15110" i_length="167">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15109" g_stop="14815" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="2021" r_stop="2316" r_length="296" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2317" polyA_stop="2344"/>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E747521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2315</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18018" e_stop="17811"/>
          <exon e_start="17607" e_stop="17505"/>
          <exon e_start="17366" e_stop="17175"/>
          <exon e_start="17076" e_stop="16842"/>
          <exon e_start="16754" e_stop="16427"/>
          <exon e_start="16336" e_stop="16093"/>
          <exon e_start="15986" e_stop="15277"/>
          <exon e_start="15109" e_stop="14815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCAAGTGTTACCAATGATCTTCAAGCAACTATAATGGCTCTAATATTAATTGTTACTATTGGGTATTTTCTACTTTTGATAGTAACACCAACTAATATGTATAGACAAATATGGACACCCAAGATTAAAGCTCACACTACCAACTCCACATACTTTGGAGCTCAAGGTATATACTTTCGAGGCGAAACCAGAAATTTCGTTAAGAATATTAAAAGAACCTATTTACTTTGTATAATTTTCTAGTTGCACCTTAGTCTATGCTGAGGTTATACATATAAAAGTTGCTTATCATGATTGTTGGTATATATGGTTGTTGGATAAAGATAGAAATTATGAATTTATGTTTAATTTTTTTTTTTTCAAAAACAGGAAGGACTTTGTTGATGAACACATTTCCTCTCATATTTATTGCTGTCTTGGGATGTGTATACCTCCATTTATGGAAGAAATCCAATAATAAAAACATCAACAGGTCAGTAAGGATATCTCCGACTCAAACATTAAATTTTATAAGCACTATTTTAGCGTAATTAACTCTAATTTACTGTATCAAATTTTACTCTTAACAAAAAAAATTAATTTATTTTTGTTTGTATTTTGTGATTAACAGATTTGAGAAGAAACAAAAGTTGGCTATATGGAGGAGGCCAATAATCATGAAGGGGCTGGGAATTGTATCAAGAATAGAGCTTGGTTTTTTTGTGATGTTTATTGCACTCTTAGTTTGGACTTTTGCTTCTTACTTGCACATTATTTTTCCCACTATTACACCAAAATCCGTAGCAAACAGTGGAGAAAAAGTGTAAGTATATATTCCGAAACAAAGTAATTTGAGATAACTATTTTTAAAAATCACGACAGATAATTTGAGCGTTGACGGATTGAATTGGTTATTGACAGATGGGAAGCCAAGTTGGAAGATTCAGGGCTAAGATTGGGACTTGTTGGAAATATATGCTTAACATTTCTATTTGTTCCAGTCACAAGAGGCTCATCTGTGTTACAAGTATTTGGTTTGACATCAGAAGCTAGTGTTAAATATCATATATGGCTTGGCCATATTGTAATGACTCTTTTTTCTGCTCATGGCATTTGTTACATTATCTATTGGGCTTCCACTCATCAATTGTCTGAGGTAATATACGATAGTCTGTAAAGTTGTTGTCATTGTAATTATCATACTGGTATTAGTAATTAATGATTGTTGATTGAAATGAAACAGATGCTGAAATGGGGAAAAACTGATATATCAAATTTGGCTGGTGAATTGGCATTGCTTTCTGGATTGGTGTTGTGGATAGCAACATTTCCTAAAATTAGGAGAAAGATGTTTGAACTCTTCTTCTACACTCATCATTTCTACATTCTCTTTGTCGTCTTCTTCGTCTTCCATGTTGGTGTTTCTTACGCTTGCATCATGCTTCCTGGTTTCTTCCTCTTCATGGTTGATCGATTCTTGAGATTCTTACAGTCACGATCAAATGTTCGTTTAGTCTCTGCTCGTGTTCTGCCATGTGAAACTCTTGAACTCAATTTCTCCAAGACTAAAGGTAAATTGATGAAAATTTCATAAATATTCAATTTTGTGACAAACAAGTCCATAACAATTTTGATCAATTTGTTTATGAATATTGTTGCAGGTTTAAGTTACACACCAACTAGCATCATGTTTGTGAATGTACCTAGCATTTCAAAATTGCAATGGCATCCTTTTACCATCACTTCAAGTAGTAATTTGGAGCCAGAGAAAATCAGTGTTGCCATTAAGGGTGAAGGAAGTTGGTCCAAAAAACTCTACCAGATGATCTCTTCCCCTAATTCTGTCGATCGTCTTAACGTCTCTGTTGAAGGACCTTATGGACCTCCTTCCACACATTTTCTAAGGTATGTATGAGTTATGACTAGTTCAAGTCGAATTTAATTCAGAGTTCGCGTACTACTACTATATGTTACAATGATAAACTAAAGTTCTGTTTTTGTTTTTTTGAAGGCATGATTTATTGGTTATGATAAGTGGAGGAAGTGGAATTACTCCTTTCATTTCCATCATTAGGGAGCTAATTCATACAAGTGAGTCACAAAAATGCAAGACACCAGAAATCCTACTTATTAGTGTGTTCAAGAATTCGGAAGATCTCACCATGTTGGACCTTCTCCTTCCTATATCTGGTGCTCCATCAGAAACTTGTAAACTGGGGCTACAAATCGAGGCTTTTGTAACGAGAGAAAAGCAACCAGTATCGACAGAAGACAAGAAGAATGTGAGGACTATATGGTTCAAGCCCAACCCATCTGATAAGCCTATCACTCCAATTCTTGGACAAAACAATTGGCTCTGGCTTGGTGCTATCATATCATGTTCCTTCCTCATTTTCTTGATTTCCTTGGGGGTCTTGAATAGATATTACATATATCCAATCGACAATAATACTAATGACATATTTTCGTATCCAATAAAGGCGGTGTTGAATATGCTAATCATTTGCATATCTATAGTCATCACAAGTAGTGCTGCATTTGTTTGGAACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAAGTAAGTTCTCGATCACAAAAGGATATTACTAATAATAACAAGTAACTCGTCATATCAAGCTTCATACATAACATGGAATTTTAGTTAGTTGAATTGTAAATAAGGTACATAACATCACAAATACGCAATATTAGAATGTCTTATTCAAATTGCTCAACTTTATGCAGGAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGTCCATCAGTTTCAGTTGGTGAGTTAGAGAATATAATGCATTCTATGCAATGGAG-AAAATAAGATGGAAGTTTTTTTGTTTGTTTGTGTGCTTATGCTTTGGTTGATTGAATTTTGCATGTAACATGCTTCCTTTGTACTGAGTAAATGTAAAAAGATACAGTTAATTCTGTTTTTA</genome_strand>
        <mrna_strand>ATGGCTCAAACATCCTCTTCCTCTCCTTCTCTTAAAGCTTCATCAAGTGTTACCAATGATCTTCAAGCAACTATAATGGCTCTAATACTAATTGTTACTATTGGGTATTTTCTACTTTTGATAGTAACACCAACTAATATGTATAGACAAATATGGACACCCAAGATTAAAGCTCACACTACCAACTCCACATACTTTGGAGCTCAAG...........................................................................................................................................................................................................GAAGGACTTTGTTGATGAACACATTTCCTCTCATATTTATTGCTGTCTTGGGATGTGTATACCTCCATTTATGGAAGAAATCCAATAATAAAAACATCAACAG..........................................................................................................................................ATTTGAGAAGAAACAAAAGTTGGCTATATGGAGGAGGCCAATAATCATGAAGGGGCTGGGAATTGTATCAAGAATAGAGCTTGGTTTTTTTGTGATGTTTATTGCACTCTTAGTTTGGACTTTTGCTTCTTACTTGCACATTATTTTTCCCACTATTACACCAAAATCCGTAGCAAACAGTGGAGAAAAAGT..................................................................................................ATGGGAAGCCAAGTTGGAAGATTCAGGGCTAAGATTGGGACTTGTTGGAAATATATGCTTAACATTTCTATTTGTTCCAGTCACAAGAGGCTCATCTGTGTTACAAGTATTTGGTTTGACATCAGAAGCTAGTGTTAAATATCATATATGGCTTGGCCATATTGTAATGACTCTTTTTTCTGCTCATGGCATTTGTTACATTATCTATTGGGCTTCCACTCATCAATTGTCTGAG.......................................................................................ATGCTGAAATGGGGAAAAACTGATATATCAAATTTGGCTGGTGAATTGGCATTGCTTTCTGGATTGGTGTTGTGGATAGCAACATTTCCTAAAATTAGGAGAAAGATGTTTGAACTCTTCTTCTACACTCATCATTTCTACATTCTCTTTGTCGTCTTCTTCGTCTTCCATGTTGGTGTTTCTTACGCTTGCATCATGCTTCCTGGTTTCTTCCTCTTCATGGTTGGTCGATTCTTGAGATTCTTACAGTCACGATCAAATGTTCGTTTAGTCTCTGCTCGTGTTCTGCCATGTGAAACTCTTGAACTCAATTTCTCCAAGACTAAAG..........................................................................................GTTTAAGTTACACACCAACTAGCATCATGTTTGTGAATGTACCTAGCATTTCAAAATTGCAATGGCATCCTTTTACCATCACTTCAAGTAGTAATTTGGAGCCAGAGAAAATCAGTGTTGCCATTAAGGGTGAAGGAAGTTGGTCCAAAAAACTCTACCAGATGATCTCCTCCCCTAATTCTGTCGATCGTCTTAACGTCTCTGTTGAAGGACCTTATGGACCTCCTTCCACACATTTTCTAAG..........................................................................................................GCATGATTTATTGGTTATGATAAGTGGAGGAAGTGGAATTACTCCTTTCATTTCCATCATTAGGGAGCTAATTCATACAAGTGAGTCACAAAAATGCAAGACACCAGAAATCCTACTTATTAGTGTGTTCAAGAATTCGGAAGATCTCACCATGTTGGACCTTCTCCTTCCTATATCTGGTGCTCCATCAGAAACTTGTAAACTGGGGCTACAAATCGAGGCTTTTGTAACGAGAGAAAAGCAACCAGTATCGACAGAAGACAAGAAGAATGTGAGGACTATATGGTTCAAGCCCAACCCATCTGATAAGCCTATCACTCCAATTCTTGGACAAAACAATTGGCTCTGGCTTGGTGCTATCATATCATGTTCCTTCCTCATTTTCCTGATTTCCTTGGGGGTCTTGAATAGATATTACATATATCCAATCGACAATAATACTAATGACATATTTTCGTATCCAATAAAGGCGGTGTTGAATATGCTAATCATTTGCATATCTATAGTCATCACAAGTAGTGCTGCATTTGTTTGGAACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAA.......................................................................................................................................................................GAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGTCCATCAGTTTCAGTTGGTGAGTTAGAGAATATAATGCATTCTATGCAATGGAGAAAAATAAGATGGAAGTTTTTTTGTTTGTTTGTGTGCTTATGCTTTGGTTGATTGAATTTTGCATGTAACATGCTTCCTTTGTACTGAGTAAATGTAAAAAGATACAGTTAATTCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296340" ref_strand="+" ref_description="SGN-E296340 [cLET-19-B18]">
      <seq>aacaagagacagagtgggactgattcaaaacagattcagaacatggaaggtgcaactcctatggcttcgcctaattcttggttctataatgccgatagggagatggaaagtttgccccaacaatcactttttcaatcaactaatctccattttggtgaaaggcctgacctcaaaagaatattgtttgagaggaaagaatcaagtgttggagttttagtgtgtggcccaaaaaggatgagacatgaagttgctaacatatgttcatctggtttagcatccaatcttcattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="15751" stop="14690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15451" g_stop="15277" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15276" i_stop="15110" i_length="167">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15109" g_stop="14990" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="295" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E296340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15451" e_stop="15277"/>
          <exon e_start="15109" e_stop="14990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAAGTAAGTTCTCGATCACAAAAGGATATTACTAATAATAACAAGTAACTCGTCATATCAAGCTTCATACATAACATGGAATTTTAGTTAGTTGAATTGTAAATAAGGTACATAACATCACAAATACGCAATATTAGAATGTCTTATTCAAATTGCTCAACTTTATGCAGGAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGT</genome_strand>
        <mrna_strand>AACAAGAGACAGAGTGGGACTGATTCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAA.......................................................................................................................................................................GAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243978" ref_strand="+" ref_description="SGN-E243978 [cLEE-1-E11](-)">
      <seq>aattaaatatatcataatcacaaaccaaaataaaaaaatatatatatcatataccaatatgatgaagtgacaatatcactttttttcttctctagatgaacataaagacaacccaaaacagctatgaataagattgggaatgtgaagttcatcataatgggacctgtaaaaataacaccaaaaatcaaaattataatttcttttatttaccctcatctcgacatgaaaaaaaaaatagaaacatgcaaaagaaaataaaggaagtccaattttcttgctaggtttattttctgtgtcgttctaattttattagaaaatttccaaaaaggcaagagtgaatgtagttattaagtactgacgagctcattcaaactcagtatgtaattttgatttaaatcttatacacagatatattaaaagatccactgacgaaccttatacacatacactattaaaaacacgcaaattgccaaacaatttttctccaaggacgaaaatttccatcagaaattcgcgtgtttttagtactagtatacttccaaactcaattttataatattcaaatcctaaattcacgcctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="20287" stop="19099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19987" g_stop="19399" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E243978" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19987" e_stop="19399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAATATATCATAATCACAAACCAAAATAAAAAAATATATATATCATATACCAATATGATGAAGTGACAATATCACTTTTTTTCTTCTCTAGATGAACATAAAGACAACCCAAAACAGCTATGAATAAGATTGGGAATGTGAAGTTCATCATAATGGGACCTGTAAAAATAACACCAAAAATCAAAATTATAATTTCTTTTATTTACCCTCATCTCGACATG-AAAAAAAAATAGAAACATGCAAAAGAAAATAAAGGAAGTCCAATTTTCTTGCTAGGTTTATTTTCTGTGTCGTTCTAATTTTATTAGAAAATTTCCAAAAAGGCAAGAGTGAATGTAGTTATTAAGTACTGACGAGCTCATTCAAACTCAGTATGTAATTTTGATTTAAATCTTATACACAGATATATTAAAAGATCCACTGACGAACCTTATACACATACACTATTAAAAACACGCAAATTGCCAAACAATTTTTCTCCAAGGACGAAAATTTCCATCAGAAATTCGCGTGTTTTTAGTACTAGTATACTTCCAAACTCAATTTTATAATATTCAAATCCTAAATTCACGCCTCGAGGATGGG</genome_strand>
        <mrna_strand>AATTAAATATATCATAATCACAAACCAAAATAAAAAAATATATATATCATATACCAATATGATGAAGTGACAATATCACTTTTTTTCTTCTCTAGATGAACATAAAGACAACCCAAAACAGCTATGAATAAGATTGGGAATGTGAAGTTCATCATAATGGGACCTGTAAAAATAACACCAAAAATCAAAATTATAATTTCTTTTATTTACCCTCATCTCGACATGAAAAAAAAAATAGAAACATGCAAAAGAAAATAAAGGAAGTCCAATTTTCTTGCTAGGTTTATTTTCTGTGTCGTTCTAATTTTATTAGAAAATTTCCAAAAAGGCAAGAGTGAATGTAGTTATTAAGTACTGACGAGCTCATTCAAACTCAGTATGTAATTTTGATTTAAATCTTATACACAGATATATTAAAAGATCCACTGACGAACCTTATACACATACACTATTAAAAACACGCAAATTGCCAAACAATTTTTCTCCAAGGACGAAAATTTCCATCAGAAATTCGCGTGTTTTTAGTACTAGTATACTTCCAAACTCAATTTTATAATATTCAAATCCTAAATTCACGCCTCGAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243977" ref_strand="+" ref_description="SGN-E243977 [cLEE-1-E11]">
      <seq>accagatcacaatccctcaaaactaatattgcaaaataaaataagtgattaataaagtgatataaaaaattaaaaattaaatttttacacttgagtcaagactacttaaatattcataaatataattcattcactcttttcggtctcaaatattagtcatttaataaattgaacttgtttcaaaatatttgactatttaagtattcatgaatataataacaatgttccttcaattattatcacgtttttcaatttcaaatattagtcgtttaacaaattaaactcgtttcaaaatatttgactacgtaagtattcttcgtgaatataatagtgaaccatcataatattcattcatttattgtcactctcttccgtctcaaatgtaagtcgtttgaaaaattaaaacttattccaaaataatatttgactttatagacaagcaaaaataatttaatttacacgcttttttctaaattaattcatccataattctctaattagtgaagtattaattgatgaagtgggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="21217" stop="20094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20924" g_stop="20394" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E243977" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20924" e_stop="20394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTATCACAATCCCTCAAAACTAATATTGCAAAATAAAATAAGTGATTAATAAAGTGATATAAAAAATTAAAAATTAAATTTTTACACTTGAGTCAAGACTACTTAAATATTCATAAATATAATTCATTCACTCTTTTCGGTCTCAAATATTAGTCATTTAATAAATTGAACTTGTTTCAAAATATTTGACTATTTAAGTATTCATGAATATAATAACAATGTTCCTTCAATTATTATCACGTTTTTCAATTTCAAATATTAGTCGTTTAACAAATTAAACTCGTTTCAAAATATTTGACTACGTAAGTATTCTTCGTGAATATAATAGTGAACCATCATAATATTCATTCATTTATTGTCACTCTCTTCCGTCTCAAATGTAAGTCGTTTGAAAAATTAAAACTTATTCCAAAATAATATTTGACTTTATAGACAAGCAAAAATAATTTAATTTACACGCTTTTTTCTAAATTAATTCATCCATAATTCTCTAATTAGTGAAGTATTAATTGATGAAGTGGGACAC</genome_strand>
        <mrna_strand>ACCA-G-ATCACAATCCCTCAAAACTAATATTGCAAAATAAAATAAGTGATTAATAAAGTGATATAAAAAATTAAAAATTAAATTTTTACACTTGAGTCAAGACTACTTAAATATTCATAAATATAATTCATTCACTCTTTTCGGTCTCAAATATTAGTCATTTAATAAATTGAACTTGTTTCAAAATATTTGACTATTTAAGTATTCATGAATATAATAACAATGTTCCTTCAATTATTATCACGTTTTTCAATTTCAAATATTAGTCGTTTAACAAATTAAACTCGTTTCAAAATATTTGACTACGTAAGTATTCTTCGTGAATATAATAGTGAACCATCATAATATTCATTCATTTATTGTCACTCTCTTCCGTCTCAAATGTAAGTCGTTTGAAAAATTAAAACTTATTCCAAAATAATATTTGACTTTATAGACAAGCAAAAATAATTTAATTTACACGCTTTTTTCTAAATTAATTCATCCATAATTCTCTAATTAGTGAAGTATTAATTGATGAAGTGGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233548" ref_strand="+" ref_description="SGN-E233548 [cLED-9-M22]">
      <seq>cacactggaatgttctatgcctgcattatgcttcctggtttcttcctcttcttgatcgatcgatacttgagattcttgcaatccaagcaacaagttcgtttgatttcagcccgagttttgacttgtgaaactgttgaactcaacttctccaaaatatcaggtttggagtactctcctacgagcattatgttcctaaacgtgccaagcatatccaaattgcagtggcatccattcactgtaacttcaaacagtaacctagaatcagatacaattagtgttgtcatcaaatgtgaaggaagctggactaagaagctttacagtgtcatgtcattgcctaaaccagtcgatcgtcttgatgtttctgttgaaggaccctatggacctgcttccactcatttcctaaggcatgatacattggtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="24260" stop="25465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24560" g_stop="24719" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24720" i_stop="24801" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24802" g_stop="25045" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="404" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25046" i_stop="25145" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25146" g_stop="25165" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="424" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E233548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24560" e_stop="24719"/>
          <exon e_start="24802" e_stop="25045"/>
          <exon e_start="25146" e_stop="25165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTGGAATGTTCTATGCCTGCATTATGCTTCCTGGTTTCTTCCTCTTCTTGATCGATCGATACTTGAGATTCTTGCAATCCAAGCAACAAGTTCGTTTGATTTCAGCCCGAGTTTTGACTTGTGAAACTGTTGAACTCAACTTCTCCAAAATATCAGGTTAGCTACATTTCCATCTCTCATTTTCCAGGTTACAGATATCAGTTTTTATGGACAGACGATTACTTGTTCTAATTTGTAGGTTTGGAGTACTCTCCTACGAGCATTATGTTCCTAAACGTGCCAAGCATATCCAAATTGCAGTGGCATCCATTCACTGTAACTTCAAACAGTAACCTAGAATCAGATACAATTAGTGTTGTCATCAAATGTGAAGGAAGCTGGACTAAGAAGCTTTACAGTGTCATGTCATTGCCTAAACCAGTCGATCGTCTTGATGTTTCTGTTGAAGGACCCTATGGACCTGCTTCCACTCATTTCCTAAGGTCAGATATGTTTTACAGTTATCAGTGTGAAGATTTTTTACTCGAGTCGATGTAGTTTCACTATGATATTTGGTGATGGTGTGGTCAATTTTGATGACAGGCATGATACATTGGTGTTGA</genome_strand>
        <mrna_strand>CACACTGGAATGTTCTATGCCTGCATTATGCTTCCTGGTTTCTTCCTCTTCTTGATCGATCGATACTTGAGATTCTTGCAATCCAAGCAACAAGTTCGTTTGATTTCAGCCCGAGTTTTGACTTGTGAAACTGTTGAACTCAACTTCTCCAAAATATCAG..................................................................................GTTTGGAGTACTCTCCTACGAGCATTATGTTCCTAAACGTGCCAAGCATATCCAAATTGCAGTGGCATCCATTCACTGTAACTTCAAACAGTAACCTAGAATCAGATACAATTAGTGTTGTCATCAAATGTGAAGGAAGCTGGACTAAGAAGCTTTACAGTGTCATGTCATTGCCTAAACCAGTCGATCGTCTTGATGTTTCTGTTGAAGGACCCTATGGACCTGCTTCCACTCATTTCCTAAG....................................................................................................GCATGATACATTGGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295218" ref_strand="+" ref_description="SGN-E295218 [cLET-20-N18]">
      <seq>acctgcttccactcatttcctaaggcatgatacattggtgttgatcagtggagggagtggaataactccattcatttccatcgtcagagagctgattcatatgagctcaacactgaaatgcaaaactccaaagatcttattagttagtgtgttcaggaatacttcacaactctctatgttagaccttctttatcctatagcaggcactccttcaggatgttcttctaatcttgacctacaagttgaggcttatataaccagagagattgaaccagcacaagaaaaatccgaacccctacggaccattttgttcaaacctgaccactctgatgcacccataacccccattttaggccagaacaattggctctggcttgcagctataatatcgtcttcatttgctttgtaccttctatttgtgggacttctttaccaatactatgtttaccctatggaccatggtactaaccaggtattcccataccacacaagggctttattcaacatgttgtttatagcagctgctatagtaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="24722" stop="25957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25022" g_stop="25045" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25046" i_stop="25145" i_length="100">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25146" g_stop="25657" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="536" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E295218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25022" e_stop="25045"/>
          <exon e_start="25146" e_stop="25657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGCTTCCACTCATTTCCTAAGGTCAGATATGTTTTACAGTTATCAGTGTGAAGATTTTTTACTCGAGTCGATGTAGTTTCACTATGATATTTGGTGATGGTGTGGTCAATTTTGATGACAGGCATGATACATTGGTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTA</genome_strand>
        <mrna_strand>ACCTGCTTCCACTCATTTCCTAAG....................................................................................................GCATGATACATTGGTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321528" ref_strand="+" ref_description="SGN-E321528 [cTOB-23-N14]">
      <seq>gtgttgatcagtggagggagtggaataactccattcatttccatcgtcagagagctgattcatatgagctcaacactgaaatgcaaaactccaaagatcttattagttagtgtgttcaggaatacttcacaactctctatgttagaccttctttatcctatagcaggcactccttcaggatgttcttctaatcttgacctacaagttgaggcttatataaccagagagattgaaccagcacaagaaaaatccgaacccctacggaccattttgttcaaacctgaccactctgatgcacccataacccccattttaggccagaacaattggctctggcttgcagctataatatcgtcttcatttgctttgtaccttctatttgtgggacttctttaccaatactatgtttaccctatggaccatggtactaaccaggtattcccataccacacaagggctttattcaacatgttgtttatagcagctgctatagtaattacagcaagtgcagccttcctatggaacaagaagaaaagtgctagggaaactaagcagattcaggacatggcagattcagcaaaatctttgaactcattaatagcttatgctgatcaagagctagaaagtcttccctcacagtcgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="24859" stop="26103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25159" g_stop="25803" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E321528" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25159" e_stop="25803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTACAGCAAGTGCAGCCTTCCTATGGAACAAGAAGAAAAGTGCTAGGGAAACTAAGCAGATTCAGGACATGGCAGATTCAGCAAAATCTTTGAACTCATTAATAGCTTATGCTGATCAAGAGCTAGAAAGTCTTCCTCAACAGTCGCTC</genome_strand>
        <mrna_strand>GTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTACAGCAAGTGCAGCCTTCCTATGGAACAAGAAGAAAAGTGCTAGGGAAACTAAGCAGATTCAGGACATGGCAGATTCAGCAAAATCTTTGAACTCATTAATAGCTTATGCTGATCAAGAGCTAGAAAGTCTTCCCTCACAGTCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716000" ref_strand="+" ref_description="SGN-E716000 [FB15DD08]">
      <seq>tgcacatgttgcttctgttaagaatattttagaaagtcatgcaagctatttgatgtctggaaaagaactgtcaaagctcgttgcatttgtaaagggcacgcagtttgatcttgtggaatatttgcagcgagaaagatatggaagtgctcgtttggacaactttgcttcaggctttgaactgattgggcaaaagcttcagatggaaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaagttcaaagagtggattgtagtattggccacacttttgaggcggtctgaggtcttgtttgatttatttcagcatgatttacgcttgtggaaagcatatagcattactttaaagacccatccatcttttgtccaataccatgacttgcttgaaagtttggatgaaaaactttcatccacttcaaatttagaagaaaaatgagctctctggatgtaaagagctccgttggtcagctttgctagaaaatggttaaaagagcttccagtgagatcttctacttcaagctttaaccgcaccaacttgaaatcagcataaatgtctactgctctattgggaagggggttgagcggctctgcagatgagatttttggttcctgttctactttacccaactgtgtcctgcagaaatttattttgtagataggcgtatcattgctattagttctctttggtttccatggtcctgtttctttttcatgatttatagtttgtatcaacttctagctttttcacaagggtgtggggtgatcataatgaaaagggacacctcttgtatgaaagatctgatcttccgatgaatagagaatagaagagattttgtgcattactgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="28735" stop="26475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28435" g_stop="28321" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28244" g_stop="28167" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="193" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27715" g_stop="27599" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.583" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27414" g_stop="27352" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="373" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27351" i_stop="27274" i_length="78">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27273" g_stop="26762" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="884" r_length="511" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E716000" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28435" e_stop="28321"/>
          <exon e_start="28244" e_stop="28167"/>
          <exon e_start="27715" e_stop="27599"/>
          <exon e_start="27414" e_stop="27352"/>
          <exon e_start="27273" e_stop="26762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACATGTTGCTTCTGTTAAGAATATTTTAGAAAGTCATGCAAGCTATTTGATGTCTGGAAAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTGGTATGATTGACAAAAAAATCAGGTTGTATCTTATTATGTTATTAAAAACAGATCATGTGATATAAATGTCTTGCAGGAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAGGTACTAACAAGTATTGCTTGTGAACGATATTTTGAATGCCACAAATGTATCATCATAATAGATGTTTCATATCAGATGGATGATAGGGTGAATTATGTCCACAAACTATTTTAAGCTCTTGCATCACAAGGGGCATTTGTCTCCAGAGAAAATGAGAAGTTTCTACTTCATGATCAAGTTATGAGTTTATTGATTTTTGTGTTTATAAAAGTACTCCTAAATTAATTTCAATCTCTTGGTTTCATGCTTTGTTAGTGTTCCTTATTTATGTCCATAGATGTTCCTGTTCATGTAACAACTTTTGACTTATGCTAATGATGCCCGAATTTCTTTTTTAAGATGTAATTCTGTTAATATGTTTGCTGATATGCATTCTTAAAGTATGTTCAGCTATAACTGTTGTTGAACTTAAAGACTCATACTGATAATCTTGTTTCGTTTGAATCATCAGCTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAGGTTTGGCTAACTTCCTTTAACTGGATATAGGATACTACAGATATGTTGCCTTAACTACATGAAAAATGAGTTGCCATCAGTTTTACTGTGTTCCCATACGGAAGAGCCTTAAATTCTGCTTATTTTGAGAATTGCTTTTATTAGTTGCAACTCACACGAGGTTCCTTTTGTTATTTTTGCTTAGGTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGCATTACTGCATCACTTTTTCTAA</genome_strand>
        <mrna_strand>TGCACATGTTGCTTCTGTTAAGAATATTTTAGAAAGTCATGCAAGCTATTTGATGTCTGGAAAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTG............................................................................GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTTTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG........................................................................................................................................................................................GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAG..............................................................................ACCCATCCATCTTTTGTCCAATACCATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCTCCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCGCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGCGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTC-ACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAAGAGATTTTGTGCATTACTGCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337535" ref_strand="+" ref_description="SGN-E337535 [cTOE-11-N20]">
      <seq>taaagagcaccgttggtcagctttgctagaaaatggttaaaagagcttccagtgagatcttctacttcaagctttaaccccaccaacttgaaatcagcataaatgtctactgctctattgggaagggggttgagcggctctgcagatgagatttttggttcctgttctactttacccaactgtgtcctgcagaaatttattttgtagataggtgtatcattgctattagttctctttggtttccatggtcctgtttctttttcatgatttatagtttgtatcaacttctagctttttcaacaagggtgtggggtgatcataatgaaaagggacacctcttgtatgaaagatctgatcttccgatgaatagagaatagagaagattttgtgaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="27474" stop="26483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27174" g_stop="26770" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E337535" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27174" e_stop="26770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGCATTACTGCATCACT</genome_strand>
        <mrna_strand>TAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGAANAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339489" ref_strand="+" ref_description="SGN-E339489 [cTOE-16-A13]">
      <seq>agaactgtcaaagctcgttgcatttgtaaagggcacgccagtttgatcttgtggaatatttgcagcgagaaagatatggaagtgctcgtctggacaactttgcttcaggctttgaactgattgggcaaaagcttcagatggaaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaagttcaaagagtggattgtagtattggccacacttttgaggcggtctgaggtcttgtttgatttatttcagcatgatttacgcttgtggaaagcatatagcattactttaaaggtaaatttgatacattatttctttggttacattgactttatttgtgcatcttactgtggttttcctgttcatcttcagacccatccatcttttgtccaatacgatgacttgcttgaaagtttggatgaaaaactttcatccacttcaaatttagaagaaaaatgagctctctggatgtaaagagcaccgttggtcagctttgctagaaaatggttaaaagagcttccagtgagatcttctacttcaagctttaaccccaccaacttgaaatcagcataaatgtctactgctctattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="28672" stop="26753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28372" g_stop="28321" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76">
            <donor d_prob="0.888" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28244" g_stop="28167" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27715" g_stop="27599" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="248" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.583" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27414" g_stop="27053" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="610" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E339489" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28372" e_stop="28321"/>
          <exon e_start="28244" e_stop="28167"/>
          <exon e_start="27715" e_stop="27599"/>
          <exon e_start="27414" e_stop="27053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACG-CAGTTTGATCTTGTGGTATGATTGACAAAAAAATCAGGTTGTATCTTATTATGTTATTAAAAACAGATCATGTGATATAAATGTCTTGCAGGAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAGGTACTAACAAGTATTGCTTGTGAACGATATTTTGAATGCCACAAATGTATCATCATAATAGATGTTTCATATCAGATGGATGATAGGGTGAATTATGTCCACAAACTATTTTAAGCTCTTGCATCACAAGGGGCATTTGTCTCCAGAGAAAATGAGAAGTTTCTACTTCATGATCAAGTTATGAGTTTATTGATTTTTGTGTTTATAAAAGTACTCCTAAATTAATTTCAATCTCTTGGTTTCATGCTTTGTTAGTGTTCCTTATTTATGTCCATAGATGTTCCTGTTCATGTAACAACTTTTGACTTATGCTAATGATGCCCGAATTTCTTTTTTAAGATGTAATTCTGTTAATATGTTTGCTGATATGCATTCTTAAAGTATGTTCAGCTATAACTGTTGTTGAACTTAAAGACTCATACTGATAATCTTGTTTCGTTTGAATCATCAGCTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAGGTTTGGCTAACTTCCTTTAACTGGATATAGGATACTACAGATATGTTGCCTTAACTACATGAAAAATGAGTTGCCATCAGTTTTACTGTGTTCCCATACGGAAGAGCCTTAAATTCTGCTTATTTTGAGAATTGCTTTTATTAGTTGCAACTCACACGAGGTTCCTTTTGTTATTTTTGCTTAGGTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGG</genome_strand>
        <mrna_strand>AGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCCAGTTTGATCTTGTG............................................................................GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG........................................................................................................................................................................................GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312720" ref_strand="+" ref_description="SGN-E312720 [cTOA-8-M5]">
      <seq>caatcatgactgcaaagagctttcctgcatcaatgcgttttattcctgatcggctccctagagaaggcattgcaggaaatggtggtctgccaacttctttggatctgtcagtccgagagcctacccgatgcttaatactaaggacaaatggagagctttcacttcttgatttggatgaggggagagaaagagaacttacggactccgtagagttgttttgggttacctgtggtcagtcagaggagaaagcaagcttgattgaggaagtttcatggttagactatggccaccgtggaatgcaggtttggtatccatctcctggtgctgatgtttttaagcaagaggattttttgcagttggatccggagctggattttgatcgtgaggtttatcctcttggtttgcttccaaatgctggagttgtagttggcgtctcccagagaatgtcattttccgcatgtacagagtttccatgtttcgagccatcacctcaagctcagactattttgcattgcctacttcgacatcttctacagaaggataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="34466" stop="32322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34166" g_stop="34040" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34039" i_stop="33904" i_length="136">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33903" g_stop="33729" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="302" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33728" i_stop="33633" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33632" g_stop="33579" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="356" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33578" i_stop="32802" i_length="777">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32801" g_stop="32622" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="536" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E312720" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34166" e_stop="34040"/>
          <exon e_start="33903" e_stop="33729"/>
          <exon e_start="33632" e_stop="33579"/>
          <exon e_start="32801" e_stop="32622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCATGACTGCAAAGAGCCATCCTGCATCAATGCGTTTTATTCCTGATCAGCTCCCAAGAGAAGGCATTGCAGGAAATGGTGGTCTGCCAACTTCTTTGGATCTGTCAGTCCGAGAGCCTACCCGGTATGTACTTATTGCTGAATGTTTACATCTCTGAGTTGGACCCTGCATTGCTGCATGCTAGTATCGATGTGTACTGATAAGTGATATGTGCTTTAGGACTTTGTTGTCATTTTCTAGTTCTTGCATGTACTTTCAGATGCTTAATACTAAGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGAGAACTTACGGACTCCGTAGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCAAGCTTGATTGAGGAAGTTTCATGGTTAGACTATGGCCACCGTGGAATGCAGGTAACAGTTTTCTTTTACACTTAGAGTTATTTTGTACAATTCTGTACTTACCTTACATGTCTGATTTATATACTGGTTAAAAGCTCCTTATTACAGGTTTGGTATCCATCTCCTGGTGCTGATGTTTTTAAGCAAGAGGATTTTTTGCAGGTATTCAAGTTGTTATTGCTGTAGTCCACATAGTGTTTTGTTTTTGATTTTACACTATCTATAATTGTCCATATTTTAGTTATTAGTAGCTCTTTAGTGATTCAAGAAATATAGCCTTTGGTCTGTTTTGATATGCACTGGTCTATGTGAAAAGTTTGCTTCCCTTTTCTTTCTTTTCTCTTGAGGGGAGGAGTTGGGAAAGAAGATTAAAGAGAAACTGTCAGTATCAACAAGATCAGGGGAAGTAAAAAGAAGCCTAGATATTTTCTGGTATAGGTTGTTTTGGGAAATTGGAAGTGCTTAAGCATTTCTCAAGGTCAAACACTTTGGGGCTAATTTAAGTTAAAAACAGTGGAGTCCTGAGTAAAATATAACTGAAGGGTGGAACCTGCATTGAAGTTTAATTGTTTAAATAATGGATCATTTCATGATGTCATTTGAAAGAGAATTGAAATACCTGCATGGATGTACTTCTTGCCTAAAGAGTTAAGATTCATCTTTTGACAGATTTAAGCATCAGAGTATTATTATTGATCATCTTTAGTTTATGACCAAACTAAGGTCCATGAATAGTAAGCATTACTGCACCACCAGTTATGACCTTAGCTTGTCATTTATTGCCCCGGATCATTAACTACCATCACGCATAAATTCTCTTAAAAAAGAGAGCCTATTATCATGCACAGACCTAAAATCTCATGACCTGTCTTTCCCTTTATGTCTAAAATCGCATCTACTGTTCTTTCATTTATTTGAATCTACGGTGTGAACTTGTAGTTGGATCCGGAGCTGGATTTTGATCGTGAGGTTTATCCTCTTGGTTTGCTTCCAAATGCTGGAGTTGTAGTTGGCGTCTCCCAGAGAATGTCATTTTCCGCATGTACAGAGTTTCCATGTTTCGAGCCATCACCTCAAGCTCAGACTATTTTGCATTGCCTACTTCGACATCTTCTACAG</genome_strand>
        <mrna_strand>CAATCATGACTGCAAAGAGCTTTCCTGCATCAATGCGTTTTATTCCTGATCGGCTCCCTAGAGAAGGCATTGCAGGAAATGGTGGTCTGCCAACTTCTTTGGATCTGTCAGTCCGAGAGCCTACCCG........................................................................................................................................ATGCTTAATACTAAGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGAGAACTTACGGACTCCGTAGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCAAGCTTGATTGAGGAAGTTTCATGGTTAGACTATGGCCACCGTGGAATGCAG................................................................................................GTTTGGTATCCATCTCCTGGTGCTGATGTTTTTAAGCAAGAGGATTTTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCCGGAGCTGGATTTTGATCGTGAGGTTTATCCTCTTGGTTTGCTTCCAAATGCTGGAGTTGTAGTTGGCGTCTCCCAGAGAATGTCATTTTCCGCATGTACAGAGTTTCCATGTTTCGAGCCATCACCTCAAGCTCAGACTATTTTGCATTGCCTACTTCGACATCTTCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712987" ref_strand="+" ref_description="SGN-E712987 [FB06BF03]">
      <seq>ctctaggatatcccccacaaccccatggtaatccaccaccaccacaacatcctcagggttatcctccatctcagcaaaaccctcaggagtaccaaccacctcagcaacaacctcaggattatccaccacctcagcagcagcctcagggttatccaccacaacagcaccctcaaggttatccaccaccacagcagacgcctcagggttacccaccaccacagcagcagcctcagggttacccaccaccacagcagcagcctcagggttacccatcaccacagcagccacctcagggttacccaccagccaattatccccctcctggtgctggagaacccaaatctaatcatgttcaatgagttgaaactttcttttttttggcaggaaaatcccttgatctctactcgaatttactacaatacttttaaattattcttcctttcttagctagtagattatggtaattaagataataattgacttgcgtaagaggatgacttattctatgcaaagtgatcattcaatattacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="44467" stop="43336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44167" g_stop="43635" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E712987" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44167" e_stop="43635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGATATCCCCCACAACCCCATGGTAATCCACCACCACCACAACATCCTCAGGGTTATCCTCCATCTCAGCAAAACCCTCAGGAGTACCAACCACCTCAGCAACAACCTCAGGATTATCCACCACCTCAGCAGCAGCCTCAGGGTTATCCACCACAACAGCAGCCTCAAGGTTATCCACCACCACAGCAGACGCCTCAGGGTTACCCACCACCACAGCAGCAGCCTCAGGGTTACCCACCACCACAGCAGCAGCCTCAGGGTTACCCATCACCACAGCAGCCACCTCAGGGTTACCCACCAGCCAATTATCCCCCTCCTGGTGCTGGAGAACCCAAATCTAATCATGTTCAATGAGTTGAAACTTTCTTTTTTTTGGCAGGAAAATCCATTGATCTCTACTTGAATTTAGTACAATACTTTTAGATTATTCTTCATTTCTTAGCTTGTAGATTATGGTAATTCAGATAATAATTGACTTGTGTAAGAGGATGACTTATTCTATGCGGAGTGATCATTCAATATTAAGAT</genome_strand>
        <mrna_strand>CTCTAGGATATCCCCCACAACCCCATGGTAATCCACCACCACCACAACATCCTCAGGGTTATCCTCCATCTCAGCAAAACCCTCAGGAGTACCAACCACCTCAGCAACAACCTCAGGATTATCCACCACCTCAGCAGCAGCCTCAGGGTTATCCACCACAACAGCACCCTCAAGGTTATCCACCACCACAGCAGACGCCTCAGGGTTACCCACCACCACAGCAGCAGCCTCAGGGTTACCCACCACCACAGCAGCAGCCTCAGGGTTACCCATCACCACAGCAGCCACCTCAGGGTTACCCACCAGCCAATTATCCCCCTCCTGGTGCTGGAGAACCCAAATCTAATCATGTTCAATGAGTTGAAACTTTCTTTTTTTTGGCAGGAAAATCCCTTGATCTCTACTCGAATTTACTACAATACTTTTAAATTATTCTTCCTTTCTTAGCTAGTAGATTATGGTAATTAAGATAATAATTGACTTGCGTAAGAGGATGACTTATTCTATGCAAAGTGATCATTCAATATTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215591" ref_strand="+" ref_description="SGN-E215591 [cLEL-15-E22](-)">
      <seq>gggttacccaccagccaattatccccctcctggtgctggagaacccaaatctaatcatgttcaatgagttgaaactttcttttttttggcaggaaaatccattgatctctacttgaatttagtacaatacttttagattattcttcatttcttagcttgtagattatggtaattcagataataattgacttgtgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="44175" stop="43377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43875" g_stop="43683" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="196" polyA_stop="214"/>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E215591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43875" e_stop="43683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTACCCACCAGCCAATTATCCCCCTCCTGGTGCTGGAGAACCCAAATCTAATCATGTTCAATGAGTTGAAACTTTCTTTTTTTTGGCAGGAAAATCCATTGATCTCTACTTGAATTTAGTACAATACTTTTAGATTATTCTTCATTTCTTAGCTTGTAGATTATGGTAATTCAGATAATAATTGACTTGT</genome_strand>
        <mrna_strand>GGGTTACCCACCAGCCAATTATCCCCCTCCTGGTGCTGGAGAACCCAAATCTAATCATGTTCAATGAGTTGAAACTTTCTTTTTTTTGGCAGGAAAATCCATTGATCTCTACTTGAATTTAGTACAATACTTTTAGATTATTCTTCATTTCTTAGCTTGTAGATTATGGTAATTCAGATAATAATTGACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="49107" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49407" g_stop="50063" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49407" e_stop="50063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCCCAACCCCCATACCCATACACCAGTGGTCATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTTTTAGTATCAGTGGTTATCTTCTTCTCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTTGAAGAGATTCTTTTCTCCATCTTTCTCTACCTAAAAAAGGAGATGAAGTAAAAAGTTATAAGTAATAAAAAAGCTGATG-AAAAAAAA-TCGTCGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGTAGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAAGGA--AGTTTAGGTTTTACTTTTTTTTTTTTCATTTTTTTTACTTTAAAATAATAATTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAATACATATCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTATGTTTTGTTTATTCTCAAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGATAGTACGTCTAGTTAAAGTGTTTAAATGAATAATCGGGACAAGTTTAATTGACCGCATATGACCTTGACCAAAATAAAATTTAA</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGGAGGGG-GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAGGTGTTTAGGTTTTAC--TTTTTTTTTAAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGC-TATTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264420" ref_strand="+" ref_description="SGN-E264420 [cLEG-67-F5]">
      <seq>ttttttaagttatatgatgcaagtgataaatctgttagcttttatatcatatatgctagaggaggaacatggagttttgggttaaggcacccaatttcaaacaggcatagttcgacagttgaaactaccatgtctatctcactagagagatgcccagcgaaatgctcttcgcacggggcatgcaagtctgtgttggattcaagtggtctcacattctacagtttctgtgattgtgatcgacgcactggaggctttgattgcagtgttgaactggtttcttcttcaggacaaatgtggcaatcgatttcccttattggatccaatgctgcagctttgctccctgcttactgggccctccgtcataaggcatttgctgaatgggttctttacacatcaagtgggatctcaagtgggctggatcatgcatgtgatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="56628" stop="58477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56928" g_stop="57148" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57149" i_stop="57231" i_length="83">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57232" g_stop="57296" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="286" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57297" i_stop="57825" i_length="529">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.195" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57826" g_stop="57905" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="366" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57906" i_stop="58106" i_length="201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58107" g_stop="58177" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="437" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E264420" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56928" e_stop="57148"/>
          <exon e_start="57232" e_stop="57296"/>
          <exon e_start="57826" e_stop="57905"/>
          <exon e_start="58107" e_stop="58177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAGTTATATGATGCAAGTGATAAATCTGTTAGCTTTTATATCATATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAGGTTCATATATGACGATTTCTGAAGATTAAGCTATTGGGTTCTCCACTTCTCATGTTCTCATGCAATAAATCTGTCTTTTTCAGTTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAGGTAAAACATTGTATCTTTGTGCCATTCGGAATTATGTCAGTGTCTTTAGCCATTTTAAGAGAACTGTTGCTACATCCTCTGTGGTTTCTTTGTTTGTTTGTTTGTATTTTTGAAAGTCTTCACTTAGCACTTAAAATTGAATCTGGAACTAGACGTTGCAGATTAGAGTAACTGGTTACTGTTTGCGCAATCAGTACCATATCGAGTAAACCTTTCAATTTATTCAATGTATGATAATATGAGGAGCAACATTTGTGTGTTCTGAGTGGTGATAGCTTGCTCTGATCATGATTTTGTTTAAACCATTTCAATTGCTGCATGTGTTTCACCAACAAAAATAAAAAATAACAAATTGAAACATTATGTTGCCAACATGTCTTTTAACATGCTATTTGCTATTGCTAGTACACTCTTGATTATTATTTGTTTGCTTATGTTTTGCTAACATTTTAACTCAGTTAGTTCTCATTAGTAGCCAATTAATTAGGCAATGGATCTTTTAAAGGACAAGTGCTGAAAACTCATGTAGGACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAGGTGATTAGCTAATCCCATAACATCTTCTGATTGATATTCAAGTGAAGAGGCTGTTAAAATCAGATATCTAGGGTTAATTTCAGTAGACAAACTTTTTCAGAGTGTGAGTATAATAATTTTTTTTCAGTGGACAAGCGGATGAACTTGAGGTAGAGCTATACCTTGGATTCTTCATTTTTCTATGCCTCCTTTCTTCTGCAGGCATTTGCTGAATGGGTTCTTTACACATCAAGTGGTATCTCAAGTGGCCTGTATCATGCATGTGATCTTGG</genome_strand>
        <mrna_strand>TTTTTTAAGTTATATGATGCAAGTGATAAATCTGTTAGCTTTTATATCATATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAG...................................................................................TTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAG.........................................................................................................................................................................................................GCATTTGCTGAATGGGTTCTTTACACATCAAGTGGGATCTCAAGTGGGCTGGATCATGCATGTGATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689034" ref_strand="+" ref_description="SGN-E689034 [t3_tus_55_M22]">
      <seq>tatatgctagaggaggaacatggagttttgggttaaggcaccccatttccaacaggggtaggtcgacagttgaaactaccatgtctatccccctagagagatgcccagcgaaatgctcttcccacggggcatgcaagtctgtgttggattcaagtggtcccacattctacagtttctgtgattgtgatcgacccactggaggctttgattgcagtgttgaactggtttcttcttcaggacaaatgtggcaatcgatttcccttattggatccaatgctgcagctttgctccctgcttactgggccctccgtcataaggcatttgctgaatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="56677" stop="58424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56977" g_stop="57148" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57149" i_stop="57231" i_length="83">
            <donor d_prob="0.692" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57232" g_stop="57296" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57297" i_stop="57825" i_length="529">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.195" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57826" g_stop="57905" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="317" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57906" i_stop="58106" i_length="201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58107" g_stop="58124" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="335" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E689034" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56977" e_stop="57148"/>
          <exon e_start="57232" e_stop="57296"/>
          <exon e_start="57826" e_stop="57905"/>
          <exon e_start="58107" e_stop="58124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAGGTTCATATATGACGATTTCTGAAGATTAAGCTATTGGGTTCTCCACTTCTCATGTTCTCATGCAATAAATCTGTCTTTTTCAGTTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAGGTAAAACATTGTATCTTTGTGCCATTCGGAATTATGTCAGTGTCTTTAGCCATTTTAAGAGAACTGTTGCTACATCCTCTGTGGTTTCTTTGTTTGTTTGTTTGTATTTTTGAAAGTCTTCACTTAGCACTTAAAATTGAATCTGGAACTAGACGTTGCAGATTAGAGTAACTGGTTACTGTTTGCGCAATCAGTACCATATCGAGTAAACCTTTCAATTTATTCAATGTATGATAATATGAGGAGCAACATTTGTGTGTTCTGAGTGGTGATAGCTTGCTCTGATCATGATTTTGTTTAAACCATTTCAATTGCTGCATGTGTTTCACCAACAAAAATAAAAAATAACAAATTGAAACATTATGTTGCCAACATGTCTTTTAACATGCTATTTGCTATTGCTAGTACACTCTTGATTATTATTTGTTTGCTTATGTTTTGCTAACATTTTAACTCAGTTAGTTCTCATTAGTAGCCAATTAATTAGGCAATGGATCTTTTAAAGGACAAGTGCTGAAAACTCATGTAGGACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAGGTGATTAGCTAATCCCATAACATCTTCTGATTGATATTCAAGTGAAGAGGCTGTTAAAATCAGATATCTAGGGTTAATTTCAGTAGACAAACTTTTTCAGAGTGTGAGTATAATAATTTTTTTTCAGTGGACAAGCGGATGAACTTGAGGTAGAGCTATACCTTGGATTCTTCATTTTTCTATGCCTCCTTTCTTCTGCAGGCATTTGCTGAATGGGTT</genome_strand>
        <mrna_strand>TATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCCATTTCCAACAGGGGTAGGTCGACAGTTGAAACTACCATGTCTATCCCCCTAGAGAGATGCCCAGCGAAATGCTCTTCCCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCCCACATTCTACAG...................................................................................TTTCTGTGATTGTGATCGACCCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAG.........................................................................................................................................................................................................GCATTTGCTGAATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551205" ref_strand="+" ref_description="SGN-E551205 [TUS-55-M22]">
      <seq>tatatgctagaggaggaacatggagttttgggttaaggcacccaatttccaacagggataggtcgacggttgaaactaccatgtctatccccctagagagatgcccagcgaaatgctcttcgcacggggcatgcaagtctgtgttggattcaagtggtcccacattctacagtttctgtgattgtgatcgacccactggaggctttgattgcagtgttgaactggtttcttcttcaggacaaatgtggcaatcgatttcccttattggatccaatgccgcagctttgctccctgcttactgggccctccgtcataaggcatttgctgaatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="56677" stop="58424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56977" g_stop="57148" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57149" i_stop="57231" i_length="83">
            <donor d_prob="0.692" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57232" g_stop="57296" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57297" i_stop="57825" i_length="529">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.195" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57826" g_stop="57905" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="317" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57906" i_stop="58106" i_length="201">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58107" g_stop="58124" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="335" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E551205" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56977" e_stop="57148"/>
          <exon e_start="57232" e_stop="57296"/>
          <exon e_start="57826" e_stop="57905"/>
          <exon e_start="58107" e_stop="58124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAGGTTCATATATGACGATTTCTGAAGATTAAGCTATTGGGTTCTCCACTTCTCATGTTCTCATGCAATAAATCTGTCTTTTTCAGTTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAGGTAAAACATTGTATCTTTGTGCCATTCGGAATTATGTCAGTGTCTTTAGCCATTTTAAGAGAACTGTTGCTACATCCTCTGTGGTTTCTTTGTTTGTTTGTTTGTATTTTTGAAAGTCTTCACTTAGCACTTAAAATTGAATCTGGAACTAGACGTTGCAGATTAGAGTAACTGGTTACTGTTTGCGCAATCAGTACCATATCGAGTAAACCTTTCAATTTATTCAATGTATGATAATATGAGGAGCAACATTTGTGTGTTCTGAGTGGTGATAGCTTGCTCTGATCATGATTTTGTTTAAACCATTTCAATTGCTGCATGTGTTTCACCAACAAAAATAAAAAATAACAAATTGAAACATTATGTTGCCAACATGTCTTTTAACATGCTATTTGCTATTGCTAGTACACTCTTGATTATTATTTGTTTGCTTATGTTTTGCTAACATTTTAACTCAGTTAGTTCTCATTAGTAGCCAATTAATTAGGCAATGGATCTTTTAAAGGACAAGTGCTGAAAACTCATGTAGGACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAGGTGATTAGCTAATCCCATAACATCTTCTGATTGATATTCAAGTGAAGAGGCTGTTAAAATCAGATATCTAGGGTTAATTTCAGTAGACAAACTTTTTCAGAGTGTGAGTATAATAATTTTTTTTCAGTGGACAAGCGGATGAACTTGAGGTAGAGCTATACCTTGGATTCTTCATTTTTCTATGCCTCCTTTCTTCTGCAGGCATTTGCTGAATGGGTT</genome_strand>
        <mrna_strand>TATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCCAACAGGGATAGGTCGACGGTTGAAACTACCATGTCTATCCCCCTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCCCACATTCTACAG...................................................................................TTTCTGTGATTGTGATCGACCCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCCGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAG.........................................................................................................................................................................................................GCATTTGCTGAATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252121" ref_strand="+" ref_description="SGN-E252121 [cLEG-8-A20]">
      <seq>ggctctgttcattgggttcctcattgaattctttagtcagcatagatggatttccttttcaacagaaatttgtttgaacatgctcgacagatgggaaactgtaaaagcatgggttcataatttcattcggtctcttctgaagcgctttcggtggcgctttctacttgcgggattcactgcattagcaatagctgctattagctggaaacttgaaacaagtcaaaattactggatatggcacagtgcatggcatgttacgatatatacttcttcatttctttttctctgttcaaaagcaacagcagttaactgtgataacgaacaacctcgatcagagaactatgagttggctcggcaaaattctttcaatggtagtagcgaaagaggtggtagatagttcgtaatagaatctacttcagctcaagcacataacatatagaggctagagctgcttgatgccgagaacgtacgatgaactgcaccaagaaggcacttctcttcattaggcaagtgattacaagcaaatgtttgtcaatcgtttttaacaataaaaaaaaatgtttgttagtcattgtcaaatagttttctttttctttaaagttttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="58270" stop="59692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58570" g_stop="58659" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58660" i_stop="58777" i_length="118">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58778" g_stop="58930" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="243" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58931" i_stop="59025" i_length="95">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59026" g_stop="59392" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="610" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E252121" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58570" e_stop="58659"/>
          <exon e_start="58778" e_stop="58930"/>
          <exon e_start="59026" e_stop="59392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTGTTCATTGGGTTCCTCATTGAATTCTTTAGTCATCATAGATGGATTTCCTTTTCAACAGAAATTTGTTTGAACATGCTCAACAGGTAGGTGGAATTTTTGTTCTAAAAATTTAGACATGTAAATTTTTAGAACAAATATATAAATTTTATATATTTGTTTTAATATCTAACAAAATTCAGCTAAGTATGATTTTGAATGCAGATGGGAAACTGTAAAAGCATGGGTTCATAATTTCATTCGGTCTCTTCTGAAGCGCTTTCGGTGGCGCTTTCTACTTGCGGGATTCACTGCATTAGCAATAGCTGCTATTAGCTGGAAACTTGAAACAAGTCAAAATTACTGGATATGGCACAGGTCTGAAGAGCTATCAAGCATTTCTCCTACGTTTTTTTGATTCTCTCTCTCTTTCCTACTCTTTCTCTGACATCTTTCATATCTCGTTTCTGCAGTGCATGGCATGTTACGATATATACTTCTTCATTTCTTTTTCTCTGTTCAAAAGCAACAGCAGTTAACTGTGATAACGAACAACCTCGATCAGAGAACTATGAGTTGGCTCGGCAAAATTCTTTCAATGGTAGTAGCGAAAGAGGTGGTAGATAGTTCGTAATAGAATCTACTTCAGCTCAAGCACATAACATATAGAGGCTAGAGCTGCTTGATGCCGAGAACGTACGATGAACTGCACCAAGAAGGCACTTCTCTTCATTAGGCAAGTGATTACAAGCAAATGTTTGTCAATCGTTTTTAACAATAAAAAAAAATGTTTGTTAGTCATTGTCAAATAGTTTTCTTTTTCTTTAAAGTTTTACTTGC</genome_strand>
        <mrna_strand>GGCTCTGTTCATTGGGTTCCTCATTGAATTCTTTAGTCAGCATAGATGGATTTCCTTTTCAACAGAAATTTGTTTGAACATGCTCGACAG......................................................................................................................ATGGGAAACTGTAAAAGCATGGGTTCATAATTTCATTCGGTCTCTTCTGAAGCGCTTTCGGTGGCGCTTTCTACTTGCGGGATTCACTGCATTAGCAATAGCTGCTATTAGCTGGAAACTTGAAACAAGTCAAAATTACTGGATATGGCACAG...............................................................................................TGCATGGCATGTTACGATATATACTTCTTCATTTCTTTTTCTCTGTTCAAAAGCAACAGCAGTTAACTGTGATAACGAACAACCTCGATCAGAGAACTATGAGTTGGCTCGGCAAAATTCTTTCAATGGTAGTAGCGAAAGAGGTGGTAGATAGTTCGTAATAGAATCTACTTCAGCTCAAGCACATAACATATAGAGGCTAGAGCTGCTTGATGCCGAGAACGTACGATGAACTGCACCAAGAAGGCACTTCTCTTCATTAGGCAAGTGATTACAAGCAAATGTTTGTCAATCGTTTTTAACAATAAAAAAAAATGTTTGTTAGTCATTGTCAAATAGTTTTCTTTTTCTTTAAAGTTTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390998" ref_strand="+" ref_description="SGN-E390998 [TUS-47-F7]">
      <seq>aaacacaataaaaaaagaatctttagcaaggaaggttttttttttttcttgaattgtccctcttcatacagacggagaaggtaatgtgttgggaaataagacatatacttggataactaaaacatctgcaagatgggtggttgctgttgctcttcaaggaagcctccccagcttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="64501" stop="68219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64801" g_stop="64848" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64849" i_stop="66554" i_length="1706">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66555" g_stop="66703" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="198" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67332" g_stop="67710" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="577" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67841" g_stop="67919" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="656" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E390998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64801" e_stop="64848"/>
          <exon e_start="66555" e_stop="66703"/>
          <exon e_start="67332" e_stop="67710"/>
          <exon e_start="67841" e_stop="67919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAATAAAAAAAGAATCTTTAGCAAGGAAGG-TTTTTTTTTTTCTGTAAGTATTTCTGGTGTGCCACTTCTTGGTGTATATAGTTGATTTTTTATGATATACTGAAGATGGGTGTGGTTAATTTTTTTTATACAGCTATTGGGTTGCTTTGAACTGTTTTTTGTTGAGTTGACAGGGTATCGAAAATAATTTTTTTATTTATCTTTTTCAAATTTTACTTTGTGAGATTATATTGGATTGTTGTTTTACTTTGATTGGTTGTGGTTTATTTATTAGGTGTATTTTGTAAAAGATTCTCCTTTTCACTTATAGTTACCATTCCAAGCAAAATATTTTTAGTGTGGTTATTGGTAAAGCTTCTGTTTTTCCTCCTTTTGTCTTGTTTCTAGTGTGCCACTACCTCTGTATGTAAGTCTTCTTGAAAGTTGAAACGGAAAGTGTGTAATTTTCAACCTTCTGAATTCTATTTTGTCTGGTCTATTGGTCAGGTTCTGTAAAGATTCTGTTTTTTGCTGAGTTTGTTCAATTAATTTCTGTTGTCTTTTAGCAAAGGAGTTCGCTCTAGTTCTTTCTGGTGTGCCACTGCTATTTTAATGTGTTCTTTTGAAACTGAAGGTGGTTCTAGCCAATTTATATAGAATTTGTTGAACCCAACTAGTTCAAGATTGACTGATTGAGACATAGTTGTTTAGGTCTAGTCTATTAATCAGTTTTTTGGTCTAATAATTCTGTTTTGCTTGTGTTTGTATTATTACGTCTCGTGTTTTTTTGGTGTGCCATTGTCCTTGTATGTGTATGCTTCTGAGACTGAAAGTGGGTGCAGTTAGAAATTCTGCACTGTTACTGGGTTTGGGTATATTTATCAGGTTTCTAGTGTAGTGCTTCTGTTTTCTCTGTTTTGCTAATATTTCACTTTACTTAGTTAATGTTTTCTCGAAAGCTTAGTTTCTTCGATATCATCGATGAATTTTGGTACCGGAATTGTGTTATCAAGAGTTTGACTGCTAGTACTTGTTGGTTCATGTTAACCTCAATAGTTTTTTAGGGTATGATTTATAGGTTTTTTTAAACTTCTGGGGAACTTCTCTTTTTAGCTCAGTATTTGTTTGTTATGGTTAGAATATTCATTGGAGTGTTAAAGCTTACTGCTTTGTTTATTGTTATTGCAATTTCCATTGCTTTTTGAAGATAGTTACCTGCTAACTCCCAATAGTATATGTACGGTTAGCTCCTTCCACCAAGCCCTAGCAAATTGGAAAAGAATCACCAAGTGTTTTTTTCTCTGCTCGGTTTGAACCCTAGTCTCCAAGGTATGCACCCACCCCATTGACAATTAGGATACACCTTTGGGTAATTATATAAGCTTGAGTGTACATATTACATCATTTTCTTCTCTAAGTCGGTCCTTGTGCAATCTTTGTTACACGTTCAAGACAAAGTAATCACAGAATATGGACTCTTCTGTATGTTATGGAGAGAAAAGTATAGAAGAGCAAATGCACTTCTTCAAACTATAAACTAAGTACTTAGCTTGCTTTGAGGGTTAATTTAATTCTAAACTGTTATAGTTGATGTGTACTATGTTGGATCAAAGTAGCTTTATGTTCTTGTTTCAAGAAGCTCTTTTATGTGGTATTCTTGATCCTGGTCTTCTTCTTGAATTTATATGTTGCCTTACTGGCTGTTACCATTCATTTCTTTTTGTGCCTGTAAAATACTAAATGTCCATCTCTTCTTTTGCATTTCTGCAGTGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGA</genome_strand>
        <mrna_strand>AAACACAATAAAAAAAGAATCTTTAGCAAGGAAGGTTTTTTTTTTTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286355" ref_strand="+" ref_description="SGN-E286355 [cLES-11-B21]">
      <seq>aacacaataaaaaaagaatctttagcaaggaaggttttttttttttcttgaattgtccctcttcatacagacggagaaggtaatgtgttgggaaataagacatatacttggataactaaaacatctgcaagatgggtggttgctgttgctcttcaaggaagcctccccagcttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaaaaaagcagggattgaccttgtaaaatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="64502" stop="67955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64802" g_stop="64848" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64849" i_stop="66554" i_length="1706">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66555" g_stop="66703" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="197" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67332" g_stop="67655" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="521" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E286355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64802" e_stop="64848"/>
          <exon e_start="66555" e_stop="66703"/>
          <exon e_start="67332" e_stop="67655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAATAAAAAAAGAATCTTTAGCAAGGAAGG-TTTTTTTTTTTCTGTAAGTATTTCTGGTGTGCCACTTCTTGGTGTATATAGTTGATTTTTTATGATATACTGAAGATGGGTGTGGTTAATTTTTTTTATACAGCTATTGGGTTGCTTTGAACTGTTTTTTGTTGAGTTGACAGGGTATCGAAAATAATTTTTTTATTTATCTTTTTCAAATTTTACTTTGTGAGATTATATTGGATTGTTGTTTTACTTTGATTGGTTGTGGTTTATTTATTAGGTGTATTTTGTAAAAGATTCTCCTTTTCACTTATAGTTACCATTCCAAGCAAAATATTTTTAGTGTGGTTATTGGTAAAGCTTCTGTTTTTCCTCCTTTTGTCTTGTTTCTAGTGTGCCACTACCTCTGTATGTAAGTCTTCTTGAAAGTTGAAACGGAAAGTGTGTAATTTTCAACCTTCTGAATTCTATTTTGTCTGGTCTATTGGTCAGGTTCTGTAAAGATTCTGTTTTTTGCTGAGTTTGTTCAATTAATTTCTGTTGTCTTTTAGCAAAGGAGTTCGCTCTAGTTCTTTCTGGTGTGCCACTGCTATTTTAATGTGTTCTTTTGAAACTGAAGGTGGTTCTAGCCAATTTATATAGAATTTGTTGAACCCAACTAGTTCAAGATTGACTGATTGAGACATAGTTGTTTAGGTCTAGTCTATTAATCAGTTTTTTGGTCTAATAATTCTGTTTTGCTTGTGTTTGTATTATTACGTCTCGTGTTTTTTTGGTGTGCCATTGTCCTTGTATGTGTATGCTTCTGAGACTGAAAGTGGGTGCAGTTAGAAATTCTGCACTGTTACTGGGTTTGGGTATATTTATCAGGTTTCTAGTGTAGTGCTTCTGTTTTCTCTGTTTTGCTAATATTTCACTTTACTTAGTTAATGTTTTCTCGAAAGCTTAGTTTCTTCGATATCATCGATGAATTTTGGTACCGGAATTGTGTTATCAAGAGTTTGACTGCTAGTACTTGTTGGTTCATGTTAACCTCAATAGTTTTTTAGGGTATGATTTATAGGTTTTTTTAAACTTCTGGGGAACTTCTCTTTTTAGCTCAGTATTTGTTTGTTATGGTTAGAATATTCATTGGAGTGTTAAAGCTTACTGCTTTGTTTATTGTTATTGCAATTTCCATTGCTTTTTGAAGATAGTTACCTGCTAACTCCCAATAGTATATGTACGGTTAGCTCCTTCCACCAAGCCCTAGCAAATTGGAAAAGAATCACCAAGTGTTTTTTTCTCTGCTCGGTTTGAACCCTAGTCTCCAAGGTATGCACCCACCCCATTGACAATTAGGATACACCTTTGGGTAATTATATAAGCTTGAGTGTACATATTACATCATTTTCTTCTCTAAGTCGGTCCTTGTGCAATCTTTGTTACACGTTCAAGACAAAGTAATCACAGAATATGGACTCTTCTGTATGTTATGGAGAGAAAAGTATAGAAGAGCAAATGCACTTCTTCAAACTATAAACTAAGTACTTAGCTTGCTTTGAGGGTTAATTTAATTCTAAACTGTTATAGTTGATGTGTACTATGTTGGATCAAAGTAGCTTTATGTTCTTGTTTCAAGAAGCTCTTTTATGTGGTATTCTTGATCCTGGTCTTCTTCTTGAATTTATATGTTGCCTTACTGGCTGTTACCATTCATTTCTTTTTGTGCCTGTAAAATACTAAATGTCCATCTCTTCTTTTGCATTTCTGCAGTGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAAT</genome_strand>
        <mrna_strand>AACACAATAAAAAAAGAATCTTTAGCAAGGAAGGTTTTTTTTTTTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAAAAAGCAGGGATTGACCTTGTAAAATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289152" ref_strand="+" ref_description="SGN-E289152 [cLES-18-L9]">
      <seq>ttagcaaggaaggtttttttttttcttgaattgtccctcttcatacagacggagaaggtaatgtgttgggaaataagacatatacttggataactaaaacatctgcaagatgggtggttgctgttgctcttcaaggaagcctccccagcttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="64523" stop="68217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64823" g_stop="64848" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64849" i_stop="66554" i_length="1706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66555" g_stop="66703" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="175" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67332" g_stop="67710" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="554" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67841" g_stop="67917" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="631" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E289152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64823" e_stop="64848"/>
          <exon e_start="66555" e_stop="66703"/>
          <exon e_start="67332" e_stop="67710"/>
          <exon e_start="67841" e_stop="67917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAAGGAAGGTTTTTTTTTTTCTGTAAGTATTTCTGGTGTGCCACTTCTTGGTGTATATAGTTGATTTTTTATGATATACTGAAGATGGGTGTGGTTAATTTTTTTTATACAGCTATTGGGTTGCTTTGAACTGTTTTTTGTTGAGTTGACAGGGTATCGAAAATAATTTTTTTATTTATCTTTTTCAAATTTTACTTTGTGAGATTATATTGGATTGTTGTTTTACTTTGATTGGTTGTGGTTTATTTATTAGGTGTATTTTGTAAAAGATTCTCCTTTTCACTTATAGTTACCATTCCAAGCAAAATATTTTTAGTGTGGTTATTGGTAAAGCTTCTGTTTTTCCTCCTTTTGTCTTGTTTCTAGTGTGCCACTACCTCTGTATGTAAGTCTTCTTGAAAGTTGAAACGGAAAGTGTGTAATTTTCAACCTTCTGAATTCTATTTTGTCTGGTCTATTGGTCAGGTTCTGTAAAGATTCTGTTTTTTGCTGAGTTTGTTCAATTAATTTCTGTTGTCTTTTAGCAAAGGAGTTCGCTCTAGTTCTTTCTGGTGTGCCACTGCTATTTTAATGTGTTCTTTTGAAACTGAAGGTGGTTCTAGCCAATTTATATAGAATTTGTTGAACCCAACTAGTTCAAGATTGACTGATTGAGACATAGTTGTTTAGGTCTAGTCTATTAATCAGTTTTTTGGTCTAATAATTCTGTTTTGCTTGTGTTTGTATTATTACGTCTCGTGTTTTTTTGGTGTGCCATTGTCCTTGTATGTGTATGCTTCTGAGACTGAAAGTGGGTGCAGTTAGAAATTCTGCACTGTTACTGGGTTTGGGTATATTTATCAGGTTTCTAGTGTAGTGCTTCTGTTTTCTCTGTTTTGCTAATATTTCACTTTACTTAGTTAATGTTTTCTCGAAAGCTTAGTTTCTTCGATATCATCGATGAATTTTGGTACCGGAATTGTGTTATCAAGAGTTTGACTGCTAGTACTTGTTGGTTCATGTTAACCTCAATAGTTTTTTAGGGTATGATTTATAGGTTTTTTTAAACTTCTGGGGAACTTCTCTTTTTAGCTCAGTATTTGTTTGTTATGGTTAGAATATTCATTGGAGTGTTAAAGCTTACTGCTTTGTTTATTGTTATTGCAATTTCCATTGCTTTTTGAAGATAGTTACCTGCTAACTCCCAATAGTATATGTACGGTTAGCTCCTTCCACCAAGCCCTAGCAAATTGGAAAAGAATCACCAAGTGTTTTTTTCTCTGCTCGGTTTGAACCCTAGTCTCCAAGGTATGCACCCACCCCATTGACAATTAGGATACACCTTTGGGTAATTATATAAGCTTGAGTGTACATATTACATCATTTTCTTCTCTAAGTCGGTCCTTGTGCAATCTTTGTTACACGTTCAAGACAAAGTAATCACAGAATATGGACTCTTCTGTATGTTATGGAGAGAAAAGTATAGAAGAGCAAATGCACTTCTTCAAACTATAAACTAAGTACTTAGCTTGCTTTGAGGGTTAATTTAATTCTAAACTGTTATAGTTGATGTGTACTATGTTGGATCAAAGTAGCTTTATGTTCTTGTTTCAAGAAGCTCTTTTATGTGGTATTCTTGATCCTGGTCTTCTTCTTGAATTTATATGTTGCCTTACTGGCTGTTACCATTCATTTCTTTTTGTGCCTGTAAAATACTAAATGTCCATCTCTTCTTTTGCATTTCTGCAGTGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATG</genome_strand>
        <mrna_strand>TTAGCAAGGAAGGTTTTTTTTTTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248269" ref_strand="+" ref_description="SGN-E248269 [cLEF-55-E10]">
      <seq>acagacggagaaagtaatgtgttgggaaataagacatatacttggataactaaaacatctgcaagatgggtggttgctgttgctcttcaaggaagcctccccagcttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacaatcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="66273" stop="67888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66573" g_stop="66703" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67332" g_stop="67588" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="388" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E248269" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66573" e_stop="66703"/>
          <exon e_start="67332" e_stop="67588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCG</genome_strand>
        <mrna_strand>ACAGACGGAGAAAGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAATCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396484" ref_strand="+" ref_description="SGN-E396484 [TUS-16-I3]">
      <seq>cttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacttggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="66377" stop="68648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66677" g_stop="66703" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67332" g_stop="67710" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="406" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="516" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68200" g_stop="68348" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="665" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E396484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66677" e_stop="66703"/>
          <exon e_start="67332" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTA</genome_strand>
        <mrna_strand>CTTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205990" ref_strand="+" ref_description="SGN-E205990 [cLEC-20-M4]">
      <seq>ttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttgccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="66378" stop="68216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66678" g_stop="66703" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67332" g_stop="67710" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="405" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67841" g_stop="67916" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="481" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E205990" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66678" e_stop="66703"/>
          <exon e_start="67332" e_stop="67710"/>
          <exon e_start="67841" e_stop="67916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGAT</genome_strand>
        <mrna_strand>TTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTGCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206512" ref_strand="+" ref_description="SGN-E206512 [cLEC-23-N19]">
      <seq>ttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67093" stop="68549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67393" g_stop="67710" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="428" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68249" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="478" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E206512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67393" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGC</genome_strand>
        <mrna_strand>TTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267842" ref_strand="+" ref_description="SGN-E267842 [cLEI-12-A18]">
      <seq>tgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67100" stop="68543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67400" g_stop="67710" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="421" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68243" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="465" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E267842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67400" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTT</genome_strand>
        <mrna_strand>TGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390997" ref_strand="+" ref_description="SGN-E390997 [TUS-47-F7](-)">
      <seq>tagatgaaacattacttcaacgtagctatgagataactaatgtaaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacttggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgcccttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaacaaaaaaacaagttgtagttttgcatttggtgcctggaagattaaattctgaaaacgcgtctttttggtcatgattcttctgagttccaagtgttgtacagtgaacccttttggtggttgtaattttatgttcaattgctgtacagattcttctgtcaaagattatggcaatggcatagtcattaaagtttcatagactcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67222" stop="68925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67522" g_stop="67710" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="299" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68624" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="724" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="741"/>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E390997" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67522" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTC</genome_strand>
        <mrna_strand>TAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATGTAAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391541" ref_strand="+" ref_description="SGN-E391541 [TUS-16-I3](-)">
      <seq>ttgtaaagatattaagttttttgatcgcaaagctgaaacagagttttttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacttggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgcccttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaacaaaaaaacaagttgtagttttgcatttggtgcctggaagattaaattctgaaaacgcgtctttttggtcatgattcttctgggttccaagtgttgtacagtgaacccttttggtggttgtaattttatgttcaattgctgtacagattcttctgagggagattatggcaatggcatagtcattaaagtttcatagagtcatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67262" stop="68931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67562" g_stop="67710" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="259" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68630" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="690" r_length="431" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E391541" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67562" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTCA</genome_strand>
        <mrna_strand>TTGTAAAGATATTAAGTTTTTTGATCGCAAAGCTGAAACAGAGTTTTTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGGGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGAGGGAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261345" ref_strand="+" ref_description="SGN-E261345 [cLEG-57-I5]">
      <seq>gtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacctggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgcccttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaacaaaaaaacaagttgtagttttgcatttggtgcctggaagattaaattctgaaaacgcgtctttttggtcatgattcttctgagttccaagtgttgtacagtgaacccttttggtggttgtaattttatgttcaattgctgtacagattcttctgtcaaagattatggcaatggcatagtcattaaagtttcatagactcatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67525" stop="68931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67693" g_stop="67710" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="128" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68630" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="559" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E261345" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67693" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTCA</genome_strand>
        <mrna_strand>GTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACCTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261575" ref_strand="+" ref_description="SGN-E261575 [cLEG-57-J5]">
      <seq>gtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacctggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgcccttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaaaaaaaaacaagttgtagttttgcatttggtgcctggaagaattaattctgaaaacgcgtctttttggtcatgattcttctgagttccaagtggtgtacagggaacccttttggcgggtggaattttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67525" stop="68853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67693" g_stop="67710" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="128" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68553" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="481" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E261575" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67693" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTAT</genome_strand>
        <mrna_strand>GTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACCTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAA-AAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGAATTAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGGTGTACAGGGAACCCTTTTGGCGGGTGGAATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263700" ref_strand="+" ref_description="SGN-E263700 [cLEG-60-G22]">
      <seq>gtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacctggcggcttggcctgtattcacttgtcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgccccttgatgaagatgcgagttgcatatatatggctgatgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67525" stop="68703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67693" g_stop="67710" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="128" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68200" g_stop="68405" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="335" r_length="207" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E263700" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67693" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCG-CCCTTGATGAAGATGCGAGTTGCATATATAT-GCTGATGGGAG</genome_strand>
        <mrna_strand>GTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACCTGGCGGCTTGGCCTGTATTCACTTG-TCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCCTTGATGAAGATGCGAGTTGCATATATATGGCTGATGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395420" ref_strand="+" ref_description="SGN-E395420 [TUS-16-I4](-)">
      <seq>aagaatagtctcaaaaagtaaccaccattttcatctttcatgcattcaggagtggatggaacgaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttctttagtatgttggtcgtcaacatgaggctgttgtttttcacttggaggcttggccggtattcacttgttcaatcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgccgttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaacaaaaaaacaagttttagttttgcatttggtgcctggaagattaaattatgaaaacgcgtctttttggtcatgattctttggagatacatgtgttgtacagtgaacccttttggtggttgtaattttatgttcaatagctgtacagattcttaaaagaaagattatggcaaaggcgtagtcattaaagtttcaaaaagtgatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67560" stop="68931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67860" g_stop="67950" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="0.94"/>
            <acceptor a_prob="0.803" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68200" g_stop="68630" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="523" r_length="432" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E395420" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67860" e_stop="67950"/>
          <exon e_start="68200" e_stop="68630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAG-ATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTCA</genome_strand>
        <mrna_strand>AAGAATAGTCTCAAAAAGTAACCACCATTTTCATCTTTCATGCATTCAGGAGTGGATGGAACGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCTTTAGTATGTTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGAGGCTTGGCCGGTATTCACTTGTTCAATCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCGTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTTTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTATGAAAACGCGTCTTTTTGGTCATGATTCTTTGGAGATACATGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATAGCTGTACAGATTCTTAAAAGAAAGATTATGGCAAAGGCGTAGTCATTAAAGTTTCAAAAAGTGATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286422" ref_strand="+" ref_description="SGN-E286422 [cLES-11-J16]">
      <seq>tcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacttggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgcccttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaacaaaaaaacaagttgtagttttgcatttggtgcctggaagattaaattctgaaaacgcgtctttttggtcatgattcttctgagttccaagtgttgtacagtgaacccttttggtggttgtaattttatgttcaattgctgtacagattcttctgtcaaagattatggcaatggcatagtcattaaagtttcatagactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="67605" stop="68925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67905" g_stop="67950" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68200" g_stop="68634" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="481" r_length="435" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E286422" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67905" e_stop="67950"/>
          <exon e_start="68200" e_stop="68634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTCAATTG</genome_strand>
        <mrna_strand>TCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227985" ref_strand="+" ref_description="SGN-E227985 [cLEL-39-N1](-)">
      <seq>caggtcagtagaaaatgtttcgaagcttgatagtgttcttgttaatcgtttgttaaaaaaggttaatgggtgtttgtgttttaggccatttcctcggatgctcggtgatgggaaggcggtggatttgtgcgaactgttcttggttgtgagggagaagggtgggtacgaaagggtttgtgcaagtcggtcttggggtgtggttgctgtagagtgtgggtttgatttaacaactggttcggctttgaagttggtgtatgttaagtacttggatgcattgaacagagcaatggtgaaacttgagcaacctgataatgaaaagagtgaggttaagaagagtgctttgggttttagtgctgttcggatggaccttgagctggatttgaagggggttttgatggaaatttgtgatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="86595" stop="87621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86895" g_stop="87322" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E227985" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86895" e_stop="87322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTCAGTAGAAAATGTTTCGAAGCTTGATAGTGTTCTTGTTAATCGTTTGTTAAAAGAGGTTAATGGGTGTTTGTGTTTTAGGCCATTTCCTCGGATGCTCGGTGATGGGAAGGCGGTGGATTTGTGCGAACTGTTCTTGGTTGTGAGGGAGAAGGGTGGGTACGAAAGGGTTTGTGCAAGTCGGTCTTGGGGTGTGGTTGCTGTAGAGTGTGGGTTTGATTTAACAACTGGTTCGGCTTTGAAGTTGGTGTATGTTAAGTACTTGGATGCATTGAACAGAGCAATGGTGAAACTTGAGCAACCTGATAATGAAAAGAGTGAGGTTAAGAAGAGTGCTTTGGGTTTTAGTGCTGTTCGGATGGACCTTGAGCTGGATTTGAAGGGGGTTTTGATGGAAATTTGTGATGAAAAAAAGAAAGACGAAG</genome_strand>
        <mrna_strand>CAGGTCAGTAGAAAATGTTTCGAAGCTTGATAGTGTTCTTGTTAATCGTTTGTTAAAAAAGGTTAATGGGTGTTTGTGTTTTAGGCCATTTCCTCGGATGCTCGGTGATGGGAAGGCGGTGGATTTGTGCGAACTGTTCTTGGTTGTGAGGGAGAAGGGTGGGTACGAAAGGGTTTGTGCAAGTCGGTCTTGGGGTGTGGTTGCTGTAGAGTGTGGGTTTGATTTAACAACTGGTTCGGCTTTGAAGTTGGTGTATGTTAAGTACTTGGATGCATTGAACAGAGCAATGGTGAAACTTGAGCAACCTGATAATGAAAAGAGTGAGGTTAAGAAGAGTGCTTTGGGTTTTAGTGCTGTTCGGATGGACCTTGAGCTGGATTTGAAGGGGGTTTTGATGGAAATTTGTGATGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711033" ref_strand="+" ref_description="SGN-E711033 [FA57DA04]">
      <seq>caaaaacagaaaatgcatccatctatgtatgatgataatagtgggtctgagcagctaaggtgcagccaaagggtccaatctgcaaaagattattcgaaaaaaatcaggttctcatattgatgcaactctgataaacagacctaccgactcttctgcagagtcaggagtttggtggaaccgtcggcgtaagaaaatagcatcaattgggtcggagttccaagcagatattcctgagtgtaataaggacatctatgaatctgactctaaatggttgggcacccgaatctggccactggataaaaatgaacagcgcagaatattaattgaaagagatcctgctgggaaaggaagggatgatacatgtggttgtgaatatgcaggttcttatgactgcattaggtttcacctatctgagaagagaaagaagcttgaagttgagctaccacccccccccccccccnggaaatttgactgcatgggtgaaaaggttgcactctcttggacatcagatgacaaacagaaattccatgatatagcaaagtcgatccctttatctgaggatgaaagtttcagttactggcctgacctttttaagttccttccctcacagaagcagagaatctttggtaagctactacttcaatgtctacaatcctacaccgcataggtcagcagaataggatgaatacaagtcacgttgacagtgatgatgatgaatcacggtgtggacctaagtctatttcttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="89820" stop="91166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90120" g_stop="90866" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E711033" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90120" e_stop="90866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAGAAAATGCATCCATCTATGTATGATAATAATAGTGGGTCTGAGCAGCTAAGGTGCAGCCAAAGGGTCCAATCTGCAAAAGATTATTCG-AAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTT-CTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTCCAAT-CTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGG</genome_strand>
        <mrna_strand>CAAAAACAGAAAATGCATCCATCTATGTATGATGATAATAGTGGGTCTGAGCAGCTAAGGTGCAGCCAAAGGGTCCAATCTGCAAAAGATTATTCGAAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTACCACCCCCCCCCCCCCCCNGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAGATGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTACTTCAATGTCTACAATCCTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTCACGTTGACAGTGATGATGATGAATCACGGTGTGGACCTAAGTCTATTTCTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547441" ref_strand="+" ref_description="SGN-E547441 [TUS-71-F5]">
      <seq>aaagattcttcgaaaaaatcaggttctcatattgatgcaactctgataaacagacctaccgactcttctgcagagtcaggagtttggtggaaccgtcggcgtaagaaaatagcatcaattgggtcggagttccaagcagatattcctgagtggaataaggacatctatgaatctgactctaaatggttgggcacccgaatctggccactggataaaaatgaacagcgcagaatattaattgaaagagatcctgctgggaaaggaagggatgatacatgtggttgtgaatatgcaggttcttatgactgcattaggtttcacctatctgagaagagaaagaagcttgaagttgagctaggatccgccttttatcactggaaatttgactgcatgggtgaaaaggttgcactctcttggacatcaaatgacaaacagaaattccatgatatagcaaagtcgatccctttatctgaggatgaaagtttcagttactggcctgacctttttaagttcttccctcacagaagcagagaatctttggtaagctactatttcaatgtctacaatctacaccgcataggtcagaagaataggatgaatactagttacgttgacagtgatgatgatgaatcagggtgtggacctaggtctatttcttttgggcgggatcctaagtcctccatctcttgttccacaaagaaagcacgtctagatcccatatagtaactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="89904" stop="91235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90204" g_stop="90930" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E547441" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90204" e_stop="90930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTATTCGAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTCCAATCTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAACACGTCTAGATCCCATATAGTAAC</genome_strand>
        <mrna_strand>AAAGATTCTTCGAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGGAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAATGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTACAATCTACACCGCATAGGTCAGAAGAATAGGATGAATACTAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAGCACGTCTAGATCCCATATAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361714" ref_strand="+" ref_description="SGN-E361714 [cLPP-12-P21]">
      <seq>aagattcttcgaaaaaatcaggttctcatattgatgcaactctgattaacagacctaccgactcttctgcagagtcaggagtttggtggaaccgtcggcgtaagaaaatagcatcaattgggtcggagttccaagcagatattcctgagtggaataaggacatctatgaatctgactctaaatggttgggcacccgaatctggccactggataaaaatgaacagcgcagaatattaattgaaagagatcctgctgggaaaggaagggatgatacatgtggttgtgaatatgcaggttcttatgactgcattaggtttcacctatctgagaagagaaagaagcttgaagttgagctaggatccgccttttatcactggaaatttgactgcatgggtgaaaaggttgcactctcttggacatcaaatgacaaacagaaattccatgatatagcaaagtcgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="89905" stop="90967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90205" g_stop="90667" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E361714" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90205" e_stop="90667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTATTCGAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCC</genome_strand>
        <mrna_strand>AAGATTCTTCGAAAAAATCAGGTTCTCATATTGATGCAACTCTGATTAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGGAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAATGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549536" ref_strand="+" ref_description="SGN-E549536 [TUS-71-F5](-)">
      <seq>ccgaatctggccactggataaaaatgaacagcgcagactattaattgaaagagatcctgctgggaaaggaagggatgatacatgtggttgtgaatatgcaggttcttatgactgcattaggtttcacctatctgagaagagaaagaagcttgaagttgagctaggatccgccttttatcactggaaatttgactgcatgggtgaaaaggttgcactctcttggacatcaaatgacaaacagaaattccatgatatagcaaagtcgatccctttatctgaggatgaaagtttcagttactggcctgacctttttaagttcttccctcacagaagcagagaatctttggtaagctactatttcaatgtctacaatctacaccgcataggtcagaagaataggatgaatactagttacgttgacagtgatgatgatgaatcagggtgtggacctaggtctatttcttttgggcgggatcctaagtcctccatctcttgttccacaaagaaagcacgtctagatcccatatagtaactacaggtgggtggatggatgttaacatcaatggctttttgttcagaaatgtaaattcgcggagtctcttgttctcttttacatcagcaatatttttgggtcggtggatacaatgggtttgaggggagttttacagatatcaatttttgttctgcatttctcaatgatatacagtttatactccctttagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="90098" stop="91417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90398" g_stop="91116" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="735"/>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E549536" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90398" e_stop="91116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTCCAATCTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAACACGTCTAGATCCCATATAGTAAC-A-A-ACAGGTGGATGGATGTTAACATCAATGGC-TTTTGTTCAGAAATGTAAATTCGCGGAGTCTCTTGTTCTCTTTTACATCAGCAATATTTTTTGGGTCTGTGGATACAATGAGTTTGAGGGGAGTTTTACAGATATCAATTTTTGTTCTGCATTTCTCAATG-TATACAGTTTATACTCCCTTTAGA</genome_strand>
        <mrna_strand>CCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGACTATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAATGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTACAATCTACACCGCATAGGTCAGAAGAATAGGATGAATACTAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAGCACGTCTAGATCCCATATAGTAACTACAGGTGGGTGGATGGATGTTAACATCAATGGCTTTTTGTTCAGAAATGTAAATTCGCGGAGTCTCTTGTTCTCTTTTACATCAGCAATA-TTTTTGGGTCGGTGGATACAATGGGTTTGAGGGGAGTTTTACAGATATCAATTTTTGTTCTGCATTTCTCAATGATATACAGTTTATACTCCCTTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719998" ref_strand="+" ref_description="SGN-E719998 [FC09CB01]">
      <seq>cccatggggatccgaccattaaacttccttcttcccctctctctctttgtctgaacctttttagtattacaaagaactctttttttttttctctctctaaaatcatccaaaaaaaaaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaagggggaaatgattaatgatggcatgcaaaagttttatgtgcattttcatggacctgctgaaagtccttatcatgggggtgtggggaaaataaggggggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgaaatgtctggctcattttgtttaaatgttatcaatcaaacttggagtcccatgtttgatttggaaaatgtgtttaaagtgtttcttccacaacttctcttgtatccaaatccatcaaacccattgaatggaaaggctgctgcccttataatgcaaaaccgggctgcctatgaactaaaagttaaaaaattttgtcaaaaatatgccaagcctgaaaatgttgaacctgctgcccctgaggaaaattcaagtgatgaggagttgagtgaagctaaatatgattcacctgatgatgcatttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgaaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagactattcactggggaaagatgcaaaacaatgttccccttgttttattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93365" stop="97147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93667" g_stop="93810" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="169" r_length="145" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="249" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="364" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="417" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="0.94"/>
            <acceptor a_prob="0.494" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="546" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96604" g_stop="96827" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="770" r_length="224" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E719998" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93667" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTTCCCCTCTCTCTCTTTGTCTGAACATTTTTAGTATTACAAAGAACTC-TTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAAT</genome_strand>
        <mrna_strand>TTCCTTCTTCCCCTCTCTCTCTTTGTCTGAACCTTTTTAGTATTACAAAGAACTCTTTTTTTTTTTCTCTCTCTAAAATCATCCAAAAAAAAAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGGGGAAATGATTAATGATGGCATGCAAAAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGGGGTGTGGGGAAAATAAGGGGGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAAAT............................................................................................GTCTGGCTCATTTTGTTTAAATGTTATCAATCAAACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGAAAATGTGTTTAAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAAACCCATTGAATGGAAAGGCTGCTGCCCTTATAATGCAAAACCGGGCTGCCTATGAACTAAAA........................................................GTTAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAAAAATATGCCAAGCCTGAAAATGTTGAACCTGCTGCCCCTGAGGAAAATTCAAGTGATGAGGAGTTGAGTGAAGCTAAATATGATTCACCTGATGATGCATTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGAAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243905" ref_strand="+" ref_description="SGN-E243905 [cLED-35-F19]">
      <seq>tttagtattacaaagaactcttttttttctctctctctagaatcatccaaaagaagaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93402" stop="97011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93702" g_stop="93810" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="189" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="304" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="357" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="479" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="486" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96604" g_stop="96711" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="594" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E243905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93702" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATG</genome_strand>
        <mrna_strand>TTTAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232938" ref_strand="+" ref_description="SGN-E232938 [cLED-6-C17]">
      <seq>tagtattacaaagaactcttttttttctctctctctagaatcatccaaaagaagaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93404" stop="95341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93704" g_stop="93810" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="187" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="302" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="355" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95041" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="423" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E232938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93704" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTG</genome_strand>
        <mrna_strand>TAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244874" ref_strand="+" ref_description="SGN-E244874 [cLEF-2-L1]">
      <seq>ttacaaagaactcttttttttctctctctctaaaatcatccaaaagaagaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttattatggaggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctacatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgtccttatgatgcgagaccaggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93409" stop="96977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93709" g_stop="93810" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="182" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="297" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="472" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="479" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96604" g_stop="96677" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="553" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E244874" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93709" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAG</genome_strand>
        <mrna_strand>TTACAAAGAACTCTTTTTTTTCTCTCTCTCTAAAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTATGGAGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTACATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGTCCTTATGATGCGAGACCAGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342837" ref_strand="+" ref_description="SGN-E342837 [cTOF-7-D20]">
      <seq>gaactcttttttttctctctctctagaatcatccaaaagaagaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgangagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgtncttagtccctgttaatatcaagctgaactacaaagttcangacaatgttccccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93416" stop="97137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93716" g_stop="93810" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="175" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="290" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="465" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="472" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96604" g_stop="96837" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="706" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E342837" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93716" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTG</genome_strand>
        <mrna_strand>GAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGANGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTNCTTAGTCCCTGTTAATATCAAGCTGAACTACAAAGTTCANGACAATGTTCCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264185" ref_strand="-" ref_description="SGN-E264185 [cLEG-64-H18]">
      <seq>agaatcatccaaaagaagaaagcaaccattcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaattactgtgttcatatttgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93440" stop="97203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93740" g_stop="93810" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="150" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="265" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="440" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="447" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96604" g_stop="96909" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="753" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E264185" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264185" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93740" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCT</genome_strand>
        <mrna_strand>AGAATCATCCAAAAGAAGAAAGCAACCAT-TCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244545" ref_strand="+" ref_description="SGN-E244545 [cLED-38-I16]">
      <seq>gaatcatccaaaagaagaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgagtacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtggtgtggaaaataagggtggaacttcctgatgcttaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93441" stop="94955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93741" g_stop="93810" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="150" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94655" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="207" r_length="57" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E244545" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93741" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGT-GTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCA</genome_strand>
        <mrna_strand>GAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGAGTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244287" ref_strand="+" ref_description="SGN-E244287 [cLEF-37-G5]">
      <seq>aactgtgaatcttttttcattcttgttaaaaatttgatctttttttgttcttgttaagtttgagttagttttttgtttgatttttttatttcttttgattctatatatttgttttgtttgtttatattagaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93507" stop="95314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93807" g_stop="94016" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="325" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="378" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94974" g_stop="95014" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="419" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E244287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93807" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTC</genome_strand>
        <mrna_strand>AACTGTGAATCTTTTTTCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261970" ref_strand="-" ref_description="SGN-E261970 [cLEG-58-I22]">
      <seq>gatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaattactgtgttcatatttgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93661" stop="97203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93961" g_stop="94016" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="171" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="224" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="346" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="353" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96604" g_stop="96909" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="659" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E261970" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261970" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93961" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCT</genome_strand>
        <mrna_strand>GATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260196" ref_strand="-" ref_description="SGN-E260196 [cLEG-52-N2]">
      <seq>acttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaattactgtgttcatatttgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="94337" stop="97203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94637" g_stop="94714" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="131" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="253" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="260" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96604" g_stop="96909" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="566" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E260196" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260196" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94637" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCT</genome_strand>
        <mrna_strand>ACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233193" ref_strand="-" ref_description="SGN-E233193 [cLED-6-P1]">
      <seq>tgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="94343" stop="97179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94643" g_stop="94714" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="125" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="247" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="254" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96604" g_stop="96878" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="529" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="547"/>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E233193" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233193" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94643" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTA</genome_strand>
        <mrna_strand>TGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254155" ref_strand="-" ref_description="SGN-E254155 [cLEG-34-E10]">
      <seq>gatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaattactggtgttcatatttgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="94344" stop="97203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94644" g_stop="94714" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="124" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="246" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="253" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96604" g_stop="96909" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="560" r_length="307" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E254155" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94644" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACT-GTGTTCATATTTGCTGTTATCTGCT</genome_strand>
        <mrna_strand>GATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGGTGTTCATATTTGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254967" ref_strand="-" ref_description="SGN-E254967 [cLEG-33-L3]">
      <seq>atataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="94355" stop="97143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94655" g_stop="94714" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="113" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="235" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="242" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96604" g_stop="96843" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="482" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E254967" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254967" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94655" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTAT</genome_strand>
        <mrna_strand>ATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254160" ref_strand="-" ref_description="SGN-E254160 [cLEG-34-G10]">
      <seq>aatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagccttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccggtctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtcaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagttaagcttccatgtacccaatttcaccctttaataaatgaattcaaaaatgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="94360" stop="97203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94660" g_stop="94714" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="108" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="0.98"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="230" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="237" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96604" g_stop="96909" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="543" r_length="306" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E254160" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254160" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94660" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCT</genome_strand>
        <mrna_strand>AATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGCCTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGTCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTCAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTAAGCTTCCATGTACCCAATTTCACCCTTTAATAAATGAATTCAAAAATGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240141" ref_strand="-" ref_description="SGN-E240141 [cLED-32-J14]">
      <seq>gatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgagcagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="94526" stop="97179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94826" g_stop="94859" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="0.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="156" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="163" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96604" g_stop="96878" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="438" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="456"/>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E240141" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240141" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94826" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTA</genome_strand>
        <mrna_strand>GATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGCAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244229" ref_strand="+" ref_description="SGN-E244229 [cLEF-37-G15](-)">
      <seq>gttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaaggcaatgttccccttgttttattagttaagcttcaatgtaaataatttcaccctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="96296" stop="97179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96525" g_stop="96532" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96533" i_stop="96603" i_length="71">
            <donor d_prob="0.401" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96604" g_stop="96887" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="291" r_length="284" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-E244229" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96525" e_stop="96532"/>
          <exon e_start="96604" e_stop="96887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTG</genome_strand>
        <mrna_strand>GTTAA-AG.......................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGGCAATGTTCCCCTTGTTTTATTAGTTAAGCTTCAATGTAAATAATTTCACCCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224754" ref_strand="+" ref_description="SGN-E224754 [cLEL-27-H12](-)">
      <seq>tttgtgtctgatgtgcagctgatgttaaaacgtgcagtacagtacttggtttctcacatgaggtgagatctaaagcaaggaaagtgcatgatcttttctttgacatcttgaagatagaatttccggagactgattttcgagaagcaaggaattccatttcttttgctggaccagcagcttctactacacccgcgtcttcacggctgatgcctgtaggtcaaaacaagagacacaaactgataaatgaaatggaacccgactctagcccactgctgaagccgcagacacgtggaacactccatgccggtgaagatgccaaggctaagagtcatatggctcaaagagaaacaagatttggtggtagcagtagccgggagcttagccaacaggatgattcacgcccattcactcatcccggggagcttgttatttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="99574" stop="98231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99274" g_stop="99212" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98919" g_stop="98531" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="451" r_length="389" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E224754" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99274" e_stop="99212"/>
          <exon e_start="98919" e_stop="98531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAGGTATGATCTAATTCTGCTCAATGTTACGGTCATTATGGGCCATGTGTTCATATTCATCTCATCTCCTTGACACTACCTTGGCAGAAAAGATATACAACTGCCAGTCTAAGAAATTTATCTCTATGTTCGTTTTCCTGATGTTTACTACATCATTGAATAAGAATTATGTATAATGAACTGGCATAACCAGTGAAAAGAGATCATTGTTGAGTGGTTCACCAATTATCATGTCATGCTCATACCCAGCTTCCTCCATGTTCTTTCTGTAATTTTTCTACTATTATGATCACAGGTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAAGAAAAGA</genome_strand>
        <mrna_strand>TTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTT-GGTTTCTCACATGAG....................................................................................................................................................................................................................................................................................................GTGAGATCTAAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224534" ref_strand="+" ref_description="SGN-E224534 [cLEL-27-H12](-)">
      <seq>atgaggtgagatctgaagcaaggaaagtgcatgatcttttctttgacatcttgaagatagaatttccggagactgattttcgagaagcaaggaattccatttcttttgctggaccagcagcttctactacacccgcgtcttcacggctgatgcctgtaggtcaaaacaagagacacaaactgataaatgaaatggaacccgactctagcccactgctgaagccgcagacacgtggaacactccatgccggtgaagatgccaaggctaagagtcatatggctcaaagagaaacaagatttggtggtagcagtagccgggagcttagccaacaggatgattcacgcccattcactcatcccggggagcttgttatttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="99221" stop="98231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99216" g_stop="99212" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98919" g_stop="98531" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="394" r_length="389" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E224534" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99216" e_stop="99212"/>
          <exon e_start="98919" e_stop="98531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGTATGATCTAATTCTGCTCAATGTTACGGTCATTATGGGCCATGTGTTCATATTCATCTCATCTCCTTGACACTACCTTGGCAGAAAAGATATACAACTGCCAGTCTAAGAAATTTATCTCTATGTTCGTTTTCCTGATGTTTACTACATCATTGAATAAGAATTATGTATAATGAACTGGCATAACCAGTGAAAAGAGATCATTGTTGAGTGGTTCACCAATTATCATGTCATGCTCATACCCAGCTTCCTCCATGTTCTTTCTGTAATTTTTCTACTATTATGATCACAGGTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAAGAAAAGA</genome_strand>
        <mrna_strand>ATGAG....................................................................................................................................................................................................................................................................................................GTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345528" ref_strand="+" ref_description="SGN-E345528 [cTOF-18-K14]">
      <seq>ggtgggtcagaggatagtccgtttggtttacagacaattgatctacgcgttgatgagtctgagtacagcggagtgctcgaatttgtgtctgatgtgcagctgatgttaaaacgtgcagtacagtacttcggtttctcacatgaggtgagatctgaagcaaggaaagtgcatgatcttttctttgacatcttgaagatagaatttccggagactgattttcgagaagcaaggaattccatttcttttgctggaccagcagcttctactacacccgcgtcttcacggctgatgcctgtaggtcaaaacaagagacacaaactgataaatgaaatggaacccgactctagcccactgctgaagccgcagacacgtggaacactccatgccggtgaagatgccaaggctaagagtcatatggctcaaagagaaacaagatttggtggtagcagtagccgggagcttagccaacaggatgattcacgcccattcactcatcccggggagcttgttatttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="99655" stop="98238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99355" g_stop="99212" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98919" g_stop="98538" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="526" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E345528" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99355" e_stop="99212"/>
          <exon e_start="98919" e_stop="98538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAGGTATGATCTAATTCTGCTCAATGTTACGGTCATTATGGGCCATGTGTTCATATTCATCTCATCTCCTTGACACTACCTTGGCAGAAAAGATATACAACTGCCAGTCTAAGAAATTTATCTCTATGTTCGTTTTCCTGATGTTTACTACATCATTGAATAAGAATTATGTATAATGAACTGGCATAACCAGTGAAAAGAGATCATTGTTGAGTGGTTCACCAATTATCATGTCATGCTCATACCCAGCTTCCTCCATGTTCTTTCTGTAATTTTTCTACTATTATGATCACAGGTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAA</genome_strand>
        <mrna_strand>GGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAG....................................................................................................................................................................................................................................................................................................GTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299604" ref_strand="+" ref_description="SGN-E299604 [cLEW-20-A10]">
      <seq>aacccacaagggaaagttgggataataagctcatgaatgccagcggggcttatagtggagggactaagatgtctgaggtcattcaaagaaagtgcaaaactgtcgttaccaaactccaaaagaaaatagagaagggaggtcatcaaataattccgctgctacacggtctgtggaaaagaattggtagttctggttgcatgggtgggtcagaggatagtccgtttggtttacagacaattgatctacgcgttgatgagtctgagtacagcggagtgctcgaatttgtgtctgatgtgcagctgatgttaaaacgtgcagtacagtacttcggtttctcacatgaggtgagatctgaagcaaggaaagtgcatgatcttttctttgacatcttgaagatagaatttccggagactgattttcgagaagcaaggaattccatttcttttgctggaccagcagcttctactacacccgcgtcttcacggctgatgcctgtatgtcaaaacaagagacacaaactgataaatgaaatggaacccgactctagcccactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="100487" stop="98409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100187" g_stop="100096" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100095" i_stop="99464" i_length="632">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99463" g_stop="99212" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="344" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98919" g_stop="98709" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="555" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E299604" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100187" e_stop="100096"/>
          <exon e_start="99463" e_stop="99212"/>
          <exon e_start="98919" e_stop="98709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACAAGGGAAAGTTGGGATAATAAGCTCATGAATGCCAGCGGGACTTATAGTGGAGGGACTAAGATGTCTGAGGTCATTCAAAGAAAGGTAAAATTTAAAAATACTTGGAAGTAATTCCCCTGTTACTTAAGTATAAACTAATTTTTATTGGATTATTTTATGGATACTGCATCTATACTGGAGTTAGGAAGAAGGAATCGGTTGTGTGGCACATTTTGTCATAGGTTCTTCTTTATTATTCAAATGAGTATTAGAGCTGAAAGGATACAGAAGATTCATATAGCCAACTGTGATTAGATTGGGATTGAGGCCTAATTGATTGATTAATCTAAATTTTAAAACATTGAATTGTATTATATACCTTTCTAGTTGAAAGTTTATACCTCAATCTATGATCAGTTTCCTGTTATCTGAATATTTAACAAGGCGACAGCTTTGACAAATATATGCTTGATTAGGCTAGGACTATATTTCTTTTCCCTCAGTAATTATGGTTGGATGGCTGCCTTACTTGAACACAATGGTGGACTGGTTCAGAGTAGTGTTAATCAACTATGCCTCAGCCTCAAGCAAGTTGGAGCTCATTTTGTATCTGTTTGCATAAAGAAGAATAGAAGAAACATTACTCATGGCTGTGTGTCAGTCTTTCCCTCTCTTTTGTTGCCGATATTATTCCTGATCTTGTGCATGTGTTTTTTCTTTCTATTGGCTATTTGCAGTGCAAAACTGTCGTTACCAAACTCCAAAAGAAAATAGAGAAGGGAGGTCATCAAATAATTCCGCTGCTACACGGTCTGTGGAAAAGAATTGGTAGTTCTGGTTGCATGGGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAGGTATGATCTAATTCTGCTCAATGTTACGGTCATTATGGGCCATGTGTTCATATTCATCTCATCTCCTTGACACTACCTTGGCAGAAAAGATATACAACTGCCAGTCTAAGAAATTTATCTCTATGTTCGTTTTCCTGATGTTTACTACATCATTGAATAAGAATTATGTATAATGAACTGGCATAACCAGTGAAAAGAGATCATTGTTGAGTGGTTCACCAATTATCATGTCATGCTCATACCCAGCTTCCTCCATGTTCTTTCTGTAATTTTTCTACTATTATGATCACAGGTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGC</genome_strand>
        <mrna_strand>AACCCACAAGGGAAAGTTGGGATAATAAGCTCATGAATGCCAGCGGGGCTTATAGTGGAGGGACTAAGATGTCTGAGGTCATTCAAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAACTGTCGTTACCAAACTCCAAAAGAAAATAGAGAAGGGAGGTCATCAAATAATTCCGCTGCTACACGGTCTGTGGAAAAGAATTGGTAGTTCTGGTTGCATGGGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAG....................................................................................................................................................................................................................................................................................................GTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTATGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303246" ref_strand="+" ref_description="SGN-E303246 [cLEX-5-C6]">
      <seq>caaagaatgtcttattcagtagtggtgttggtgtggactccagtggattagctcctgaatctgagaagaaaagggggcggcctaaaggtaagaaggttcctatttacacagaattggatgatgacaacggtgagttctctgaagcaagttctggggagaggaatggatattcagcccatgaagatggtgaaattggggaattcgaagatgatgaatttagtggtgcaggtggtgttacaccagttaacaaagaccagtcagaagaagatggtcccagttttgctgatagatatgaataccaccaaggtccacaaggtgctataaagactcgtgtacccgatcaattaggttcatcaggatcatcttcagacaaccaaaggccgacacagatagtatcatcgtctgtttcatctcagcagaaatttggatctctttctgcattggatgccagacccagttctcgggccaaaaggatggcagatgaattagaggaaggagaaattgcagtatctggagactcacatgtggatctccagcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="101502" stop="100270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101202" g_stop="100727" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100726" i_stop="100636" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100635" g_stop="100570" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="542" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E303246" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101202" e_stop="100727"/>
          <exon e_start="100635" e_stop="100570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAATGTCTTATTCAGTAGTGGTGTTGGTGTGGACTCCAGTGGATTAGCTCCTGAATCTGAGAAGAAAAGGGGGCGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGCCCATGAAGATGGTGAAATTGGGGAATTCGAAGATGATGAATTTAGTGGTGCAGTTGGTGTTACACCAGTTAACAAAGACCAGTCAGAAGAAGATGGTCCCAGTTTTGCTGATAGATATGAATACCACCAAGGTCCACAAGGTGCTATAAAGACTCGTGTACCCGATCAATTAGGTTCATCAGGATCATCTTCAGACAACCAAAGGCCGACACAGATAGTATCATCGTCTGTTTCATCTCAGCAGAAATTTGGATCTCTTTCTGCATTGGATGCCAGACCCAGTTCTCGGGCCAAAAGGATGGTGAGAAGATTCATTCCCTTTTCCTTTGAAGGTGTACATCCAGTACTCATAACACTTAATAACTTCCATATTTTTCATCTTTAAATTTCAGGCAGATGAATTAGAGGAAGGAGAAATTGCAGTATCTGGAGACTCACATGTGGATCTCCAGCAATCT</genome_strand>
        <mrna_strand>CAAAGAATGTCTTATTCAGTAGTGGTGTTGGTGTGGACTCCAGTGGATTAGCTCCTGAATCTGAGAAGAAAAGGGGGCGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGCCCATGAAGATGGTGAAATTGGGGAATTCGAAGATGATGAATTTAGTGGTGCAGGTGGTGTTACACCAGTTAACAAAGACCAGTCAGAAGAAGATGGTCCCAGTTTTGCTGATAGATATGAATACCACCAAGGTCCACAAGGTGCTATAAAGACTCGTGTACCCGATCAATTAGGTTCATCAGGATCATCTTCAGACAACCAAAGGCCGACACAGATAGTATCATCGTCTGTTTCATCTCAGCAGAAATTTGGATCTCTTTCTGCATTGGATGCCAGACCCAGTTCTCGGGCCAAAAGGATG...........................................................................................GCAGATGAATTAGAGGAAGGAGAAATTGCAGTATCTGGAGACTCACATGTGGATCTCCAGCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543283" ref_strand="+" ref_description="SGN-E543283 [TUS-65-A8]">
      <seq>tcaaagaatgtcttattcagtagtggtgttggagtggactccattggattatctcctgagatctgataagaaaagggggatgcctaaaggtaagaaggttcctatttatacagaattggatgatgacaacggtgagttctctgaagcaagttctggggagaggaatggatattctgaccatgaatatggtgaaattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="101503" stop="100706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101203" g_stop="101006" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-E543283" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101203" e_stop="101006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAATGTCTTATTCAGTAGTGGTGTTGGTGTGGACTCCAGTGGATTAGCTCCTGA-ATCTGAGAAGAAAAGGGGGCGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGCCCATGAAGATGGTGAAATTGGG</genome_strand>
        <mrna_strand>TCAAAGAATGTCTTATTCAGTAGTGGTGTTGGAGTGGACTCCATTGGATTATCTCCTGAGATCTGATAAGAAAAGGGGGATGCCTAAAGGTAAGAAGGTTCCTATTTATACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCTGACCATGAATATGGTGAAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>60</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="18018" PGL_stop="14815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18018" e_stop="17811"/>
            <exon e_start="17607" e_stop="17505"/>
            <exon e_start="17366" e_stop="17175"/>
            <exon e_start="17076" e_stop="16842"/>
            <exon e_start="16754" e_stop="16427"/>
            <exon e_start="16336" e_stop="16093"/>
            <exon e_start="15986" e_stop="15277"/>
            <exon e_start="15109" e_stop="14815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="0.999"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="18018" e_stop="17811" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17810" i_stop="17608" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17607" e_stop="17505" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17504" i_stop="17367" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17366" e_stop="17175" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.771">
            <gDNA_intron_boundary i_start="17174" i_stop="17077" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17076" e_stop="16842" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16841" i_stop="16755" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="16754" e_stop="16427" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="16426" i_stop="16337" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="16336" e_stop="16093" e_length="244"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16092" i_stop="15987" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="15986" e_stop="15277" e_length="710"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15276" i_stop="15110" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="15109" e_stop="14815" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18018" stop="17811"/>
              <exon start="17607" stop="17505"/>
              <exon start="17366" stop="17175"/>
              <exon start="17076" stop="16842"/>
              <exon start="16754" stop="16427"/>
              <exon start="16336" stop="16093"/>
              <exon start="15986" stop="15277"/>
              <exon start="15109" stop="14815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15451" stop="15277"/>
              <exon start="15109" stop="14990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCAAGTGTTACCAATGATCTTCAAGCAACTATAATGGCTCTAATATTAATTGTTACTATTGGGTATTTTCTACTTTTGATAGTAACACCAACTAATATGTATAGACAAATATGGACACCCAAGATTAAAGCTCACACTACCAACTCCACATACTTTGGAGCTCAAG : GAAGGACTTTGTTGATGAACACATTTCCTCTCATATTTATTGCTGTCTTGGGATGTGTATACCTCCATTTATGGAAGAAATCCAATAATAAAAACATCAACAG : ATTTGAGAAGAAACAAAAGTTGGCTATATGGAGGAGGCCAATAATCATGAAGGGGCTGGGAATTGTATCAAGAATAGAGCTTGGTTTTTTTGTGATGTTTATTGCACTCTTAGTTTGGACTTTTGCTTCTTACTTGCACATTATTTTTCCCACTATTACACCAAAATCCGTAGCAAACAGTGGAGAAAAAGT : ATGGGAAGCCAAGTTGGAAGATTCAGGGCTAAGATTGGGACTTGTTGGAAATATATGCTTAACATTTCTATTTGTTCCAGTCACAAGAGGCTCATCTGTGTTACAAGTATTTGGTTTGACATCAGAAGCTAGTGTTAAATATCATATATGGCTTGGCCATATTGTAATGACTCTTTTTTCTGCTCATGGCATTTGTTACATTATCTATTGGGCTTCCACTCATCAATTGTCTGAG : ATGCTGAAATGGGGAAAAACTGATATATCAAATTTGGCTGGTGAATTGGCATTGCTTTCTGGATTGGTGTTGTGGATAGCAACATTTCCTAAAATTAGGAGAAAGATGTTTGAACTCTTCTTCTACACTCATCATTTCTACATTCTCTTTGTCGTCTTCTTCGTCTTCCATGTTGGTGTTTCTTACGCTTGCATCATGCTTCCTGGTTTCTTCCTCTTCATGGTTGATCGATTCTTGAGATTCTTACAGTCACGATCAAATGTTCGTTTAGTCTCTGCTCGTGTTCTGCCATGTGAAACTCTTGAACTCAATTTCTCCAAGACTAAAG : GTTTAAGTTACACACCAACTAGCATCATGTTTGTGAATGTACCTAGCATTTCAAAATTGCAATGGCATCCTTTTACCATCACTTCAAGTAGTAATTTGGAGCCAGAGAAAATCAGTGTTGCCATTAAGGGTGAAGGAAGTTGGTCCAAAAAACTCTACCAGATGATCTCTTCCCCTAATTCTGTCGATCGTCTTAACGTCTCTGTTGAAGGACCTTATGGACCTCCTTCCACACATTTTCTAAG : GCATGATTTATTGGTTATGATAAGTGGAGGAAGTGGAATTACTCCTTTCATTTCCATCATTAGGGAGCTAATTCATACAAGTGAGTCACAAAAATGCAAGACACCAGAAATCCTACTTATTAGTGTGTTCAAGAATTCGGAAGATCTCACCATGTTGGACCTTCTCCTTCCTATATCTGGTGCTCCATCAGAAACTTGTAAACTGGGGCTACAAATCGAGGCTTTTGTAACGAGAGAAAAGCAACCAGTATCGACAGAAGACAAGAAGAATGTGAGGACTATATGGTTCAAGCCCAACCCATCTGATAAGCCTATCACTCCAATTCTTGGACAAAACAATTGGCTCTGGCTTGGTGCTATCATATCATGTTCCTTCCTCATTTTCTTGATTTCCTTGGGGGTCTTGAATAGATATTACATATATCCAATCGACAATAATACTAATGACATATTTTCGTATCCAATAAAGGCGGTGTTGAATATGCTAATCATTTGCATATCTATAGTCATCACAAGTAGTGCTGCATTTGTTTGGAACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAA : GAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGTCCATCAGTTTCAGTTGGTGAGTTAGAGAATATAATGCATTCTATGCAATGGAGAAAATAAGATGGAAGTTTTTTTGTTTGTTTGTGTGCTTATGCTTTGGTTGATTGAATTTTGCATGTAACATGCTTCCTTTGTACTGAGTAAATGTAAAAAGATACAGTTAATTCTGTTTTTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  S  S  S  V  T  N  D  L  Q  A  T  I  M  A  L  I  L  I  V  T  I  G  Y  F  L  L  L  I  V  T  P  T  N  M  Y  R  Q  I  W  T  P  K  I  K  A  H  T  T  N  S  T  Y  F  G  A  Q   : G  R  T  L  L  M  N  T  F  P  L  I  F  I  A  V  L  G  C  V  Y  L  H  L  W  K  K  S  N  N  K  N  I  N  R :   F  E  K  K  Q  K  L  A  I  W  R  R  P  I  I  M  K  G  L  G  I  V  S  R  I  E  L  G  F  F  V  M  F  I  A  L  L  V  W  T  F  A  S  Y  L  H  I  I  F  P  T  I  T  P  K  S  V  A  N  S  G  E  K  V :   W  E  A  K  L  E  D  S  G  L  R  L  G  L  V  G  N  I  C  L  T  F  L  F  V  P  V  T  R  G  S  S  V  L  Q  V  F  G  L  T  S  E  A  S  V  K  Y  H  I  W  L  G  H  I  V  M  T  L  F  S  A  H  G  I  C  Y  I  I  Y  W  A  S  T  H  Q  L  S  E  :  M  L  K  W  G  K  T  D  I  S  N  L  A  G  E  L  A  L  L  S  G  L  V  L  W  I  A  T  F  P  K  I  R  R  K  M  F  E  L  F  F  Y  T  H  H  F  Y  I  L  F  V  V  F  F  V  F  H  V  G  V  S  Y  A  C  I  M  L  P  G  F  F  L  F  M  V  D  R  F  L  R  F  L  Q  S  R  S  N  V  R  L  V  S  A  R  V  L  P  C  E  T  L  E  L  N  F  S  K  T  K   : G  L  S  Y  T  P  T  S  I  M  F  V  N  V  P  S  I  S  K  L  Q  W  H  P  F  T  I  T  S  S  S  N  L  E  P  E  K  I  S  V  A  I  K  G  E  G  S  W  S  K  K  L  Y  Q  M  I  S  S  P  N  S  V  D  R  L  N  V  S  V  E  G  P  Y  G  P  P  S  T  H  F  L  R :   H  D  L  L  V  M  I  S  G  G  S  G  I  T  P  F  I  S  I  I  R  E  L  I  H  T  S  E  S  Q  K  C  K  T  P  E  I  L  L  I  S  V  F  K  N  S  E  D  L  T  M  L  D  L  L  L  P  I  S  G  A  P  S  E  T  C  K  L  G  L  Q  I  E  A  F  V  T  R  E  K  Q  P  V  S  T  E  D  K  K  N  V  R  T  I  W  F  K  P  N  P  S  D  K  P  I  T  P  I  L  G  Q  N  N  W  L  W  L  G  A  I  I  S  C  S  F  L  I  F  L  I  S  L  G  V  L  N  R  Y  Y  I  Y  P  I  D  N  N  T  N  D  I  F  S  Y  P  I  K  A  V  L  N  M  L  I  I  C  I  S  I  V  I  T  S  S  A  A  F  V  W  N  K  R  Q  S  G  T  D  A  K  Q  I  Q  N  M  E  G  A  T  P  M  A  S  P  N  S  W  F  Y  N  A  D  R  E  M  E  S  L  P  Q  Q  S  L  F  Q  S  T  N  L  H  F  G  E  R  P  D  L  K   : R  I  L  F  E  R  K  E  S  S  V  G  V  L  V  C  G  P  K  R  M  R  H  E  V  A  N  I  C  S  S  G  L  A  S  N  L  H  F  E  S  I  S  F  S  W  *  V  R  E  Y  N  A  F  Y  A  M  E  K  I  R  W  K  F  F  C  L  F  V  C  L  C  F  G  *  L  N  F  A  C  N  M  L  P  L  Y  *  V  N  V  K  R  Y  S  *  F  C  F   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  H  Q  V  L  P  M  I  F  K  Q  L  *  W  L  *  Y  *  L  L  L  L  G  I  F  Y  F  *  *  *  H  Q  L  I  C  I  D  K  Y  G  H  P  R  L  K  L  T  L  P  T  P  H  T  L  E  L  K  :  E  G  L  C  *  *  T  H  F  L  S  Y  L  L  L  S  W  D  V  Y  T  S  I  Y  G  R  N  P  I  I  K  T  S  T   : D  L  R  R  N  K  S  W  L  Y  G  G  G  Q  *  S  *  R  G  W  E  L  Y  Q  E  *  S  L  V  F  L  *  C  L  L  H  S  *  F  G  L  L  L  L  T  C  T  L  F  F  P  L  L  H  Q  N  P  *  Q  T  V  E  K  K   : Y  G  K  P  S  W  K  I  Q  G  *  D  W  D  L  L  E  I  Y  A  *  H  F  Y  L  F  Q  S  Q  E  A  H  L  C  Y  K  Y  L  V  *  H  Q  K  L  V  L  N  I  I  Y  G  L  A  I  L  *  *  L  F  F  L  L  M  A  F  V  T  L  S  I  G  L  P  L  I  N  C  L  R :   C  *  N  G  E  K  L  I  Y  Q  I  W  L  V  N  W  H  C  F  L  D  W  C  C  G  *  Q  H  F  L  K  L  G  E  R  C  L  N  S  S  S  T  L  I  I  S  T  F  S  L  S  S  S  S  S  S  M  L  V  F  L  T  L  A  S  C  F  L  V  S  S  S  S  W  L  I  D  S  *  D  S  Y  S  H  D  Q  M  F  V  *  S  L  L  V  F  C  H  V  K  L  L  N  S  I  S  P  R  L  K  :  V  *  V  T  H  Q  L  A  S  C  L  *  M  Y  L  A  F  Q  N  C  N  G  I  L  L  P  S  L  Q  V  V  I  W  S  Q  R  K  S  V  L  P  L  R  V  K  E  V  G  P  K  N  S  T  R  *  S  L  P  L  I  L  S  I  V  L  T  S  L  L  K  D  L  M  D  L  L  P  H  I  F  *   : G  M  I  Y  W  L  *  *  V  E  E  V  E  L  L  L  S  F  P  S  L  G  S  *  F  I  Q  V  S  H  K  N  A  R  H  Q  K  S  Y  L  L  V  C  S  R  I  R  K  I  S  P  C  W  T  F  S  F  L  Y  L  V  L  H  Q  K  L  V  N  W  G  Y  K  S  R  L  L  *  R  E  K  S  N  Q  Y  R  Q  K  T  R  R  M  *  G  L  Y  G  S  S  P  T  H  L  I  S  L  S  L  Q  F  L  D  K  T  I  G  S  G  L  V  L  S  Y  H  V  P  S  S  F  S  *  F  P  W  G  S  *  I  D  I  T  Y  I  Q  S  T  I  I  L  M  T  Y  F  R  I  Q  *  R  R  C  *  I  C  *  S  F  A  Y  L  *  S  S  Q  V  V  L  H  L  F  G  T  R  D  R  V  G  L  M  Q  N  R  F  R  T  W  K  V  Q  L  L  W  L  R  L  I  L  G  S  I  M  P  I  G  R  W  K  V  C  P  N  N  H  F  F  N  Q  L  I  S  I  L  V  K  G  L  T  S  K  :  E  Y  C  L  R  G  K  N  Q  V  L  E  F  *  C  V  A  Q  K  G  *  D  M  K  L  L  T  Y  V  H  L  V  *  H  P  I  F  I  L  S  P  S  V  S  V  G  E  L  E  N  I  M  H  S  M  Q  W  R  K  *  D  G  S  F  F  V  C  L  C  A  Y  A  L  V  D  *  I  L  H  V  T  C  F  L  C  T  E  *  M  *  K  D  T  V  N  S  V  F  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  I  K  C  Y  Q  *  S  S  S  N  Y  N  G  S  N  I  N  C  Y  Y  W  V  F  S  T  F  D  S  N  T  N  *  Y  V  *  T  N  M  D  T  Q  D  *  S  S  H  Y  Q  L  H  I  L  W  S  S  R :   K  D  F  V  D  E  H  I  S  S  H  I  Y  C  C  L  G  M  C  I  P  P  F  M  E  E  I  Q  *  *  K  H  Q  Q  :  I  *  E  E  T  K  V  G  Y  M  E  E  A  N  N  H  E  G  A  G  N  C  I  K  N  R  A  W  F  F  C  D  V  Y  C  T  L  S  L  D  F  C  F  L  L  A  H  Y  F  S  H  Y  Y  T  K  I  R  S  K  Q  W  R  K  S  :  M  G  S  Q  V  G  R  F  R  A  K  I  G  T  C  W  K  Y  M  L  N  I  S  I  C  S  S  H  K  R  L  I  C  V  T  S  I  W  F  D  I  R  S  *  C  *  I  S  Y  M  A  W  P  Y  C  N  D  S  F  F  C  S  W  H  L  L  H  Y  L  L  G  F  H  S  S  I  V  *   : D  A  E  M  G  K  N  *  Y  I  K  F  G  W  *  I  G  I  A  F  W  I  G  V  V  D  S  N  I  S  *  N  *  E  K  D  V  *  T  L  L  L  H  S  S  F  L  H  S  L  C  R  L  L  R  L  P  C  W  C  F  L  R  L  H  H  A  S  W  F  L  P  L  H  G  *  S  I  L  E  I  L  T  V  T  I  K  C  S  F  S  L  C  S  C  S  A  M  *  N  S  *  T  Q  F  L  Q  D  *  R :   F  K  L  H  T  N  *  H  H  V  C  E  C  T  *  H  F  K  I  A  M  A  S  F  Y  H  H  F  K  *  *  F  G  A  R  E  N  Q  C  C  H  *  G  *  R  K  L  V  Q  K  T  L  P  D  D  L  F  P  *  F  C  R  S  S  *  R  L  C  *  R  T  L  W  T  S  F  H  T  F  S  K  :  A  *  F  I  G  Y  D  K  W  R  K  W  N  Y  S  F  H  F  H  H  *  G  A  N  S  Y  K  *  V  T  K  M  Q  D  T  R  N  P  T  Y  *  C  V  Q  E  F  G  R  S  H  H  V  G  P  S  P  S  Y  I  W  C  S  I  R  N  L  *  T  G  A  T  N  R  G  F  C  N  E  R  K  A  T  S  I  D  R  R  Q  E  E  C  E  D  Y  M  V  Q  A  Q  P  I  *  *  A  Y  H  S  N  S  W  T  K  Q  L  A  L  A  W  C  Y  H  I  M  F  L  P  H  F  L  D  F  L  G  G  L  E  *  I  L  H  I  S  N  R  Q  *  Y  *  *  H  I  F  V  S  N  K  G  G  V  E  Y  A  N  H  L  H  I  Y  S  H  H  K  *  C  C  I  C  L  E  Q  E  T  E  W  D  *  C  K  T  D  S  E  H  G  R  C  N  S  Y  G  F  A  *  F  L  V  L  *  C  R  *  G  D  G  K  F  A  P  T  I  T  F  S  I  N  *  S  P  F  W  *  K  A  *  P  Q  K :   N  I  V  *  E  E  R  I  K  C  W  S  F  S  V  W  P  K  K  D  E  T  *  S  C  *  H  M  F  I  W  F  S  I  Q  S  S  F  *  V  H  Q  F  Q  L  V  S  *  R  I  *  C  I  L  C  N  G  E  N  K  M  E  V  F  L  F  V  C  V  L  M  L  W  L  I  E  F  C  M  *  H  A  S  F  V  L  S  K  C  K  K  I  Q  L  I  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18018" stop="17811"/>
                    <exon start="17607" stop="17505"/>
                    <exon start="17366" stop="17175"/>
                    <exon start="17076" stop="16842"/>
                    <exon start="16754" stop="16427"/>
                    <exon start="16336" stop="16093"/>
                    <exon start="15986" stop="15277"/>
                    <exon start="15109" stop="14970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2157</number_coding_nucleotides>
                  <number_encoded_amino_acids>719</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFSSSVTNDLQATIMALILIVTIGYFLLLIVTPTNMYRQIWTPKIKAHTTNSTYFGAQGRTLLMNTFPLIFIAVLGCVYLHLWKKSNNKNINRFEKKQKLAIWRRPIIMKGLGIVSRIELGFFVMFIALLVWTFASYLHIIFPTITPKSVANSGEKVWEAKLEDSGLRLGLVGNICLTFLFVPVTRGSSVLQVFGLTSEASVKYHIWLGHIVMTLFSAHGICYIIYWASTHQLSEMLKWGKTDISNLAGELALLSGLVLWIATFPKIRRKMFELFFYTHHFYILFVVFFVFHVGVSYACIMLPGFFLFMVDRFLRFLQSRSNVRLVSARVLPCETLELNFSKTKGLSYTPTSIMFVNVPSISKLQWHPFTITSSSNLEPEKISVAIKGEGSWSKKLYQMISSPNSVDRLNVSVEGPYGPPSTHFLRHDLLVMISGGSGITPFISIIRELIHTSESQKCKTPEILLISVFKNSEDLTMLDLLLPISGAPSETCKLGLQIEAFVTREKQPVSTEDKKNVRTIWFKPNPSDKPITPILGQNNWLWLGAIISCSFLIFLISLGVLNRYYIYPIDNNTNDIFSYPIKAVLNMLIICISIVITSSAAFVWNKRQSGTDAKQIQNMEGATPMASPNSWFYNADREMESLPQQSLFQSTNLHFGERPDLKRILFERKESSVGVLVCGPKRMRHEVANICSSGLASNLHFESISFSW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19987" PGL_stop="19399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19987" e_stop="19399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="19987" e_stop="19399" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19987" stop="19399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTAAATATATCATAATCACAAACCAAAATAAAAAAATATATATATCATATACCAATATGATGAAGTGACAATATCACTTTTTTTCTTCTCTAGATGAACATAAAGACAACCCAAAACAGCTATGAATAAGATTGGGAATGTGAAGTTCATCATAATGGGACCTGTAAAAATAACACCAAAAATCAAAATTATAATTTCTTTTATTTACCCTCATCTCGACATGAAAAAAAAATAGAAACATGCAAAAGAAAATAAAGGAAGTCCAATTTTCTTGCTAGGTTTATTTTCTGTGTCGTTCTAATTTTATTAGAAAATTTCCAAAAAGGCAAGAGTGAATGTAGTTATTAAGTACTGACGAGCTCATTCAAACTCAGTATGTAATTTTGATTTAAATCTTATACACAGATATATTAAAAGATCCACTGACGAACCTTATACACATACACTATTAAAAACACGCAAATTGCCAAACAATTTTTCTCCAAGGACGAAAATTTCCATCAGAAATTCGCGTGTTTTTAGTACTAGTATACTTCCAAACTCAATTTTATAATATTCAAATCCTAAATTCACGCCTCGAGGATGGG</gDNA_template>
            <first_frame> N  *  I  Y  H  N  H  K  P  K  *  K  N  I  Y  I  I  Y  Q  Y  D  E  V  T  I  S  L  F  F  F  S  R  *  T  *  R  Q  P  K  T  A  M  N  K  I  G  N  V  K  F  I  I  M  G  P  V  K  I  T  P  K  I  K  I  I  I  S  F  I  Y  P  H  L  D  M  K  K  K  *  K  H  A  K  E  N  K  G  S  P  I  F  L  L  G  L  F  S  V  S  F  *  F  Y  *  K  I  S  K  K  A  R  V  N  V  V  I  K  Y  *  R  A  H  S  N  S  V  C  N  F  D  L  N  L  I  H  R  Y  I  K  R  S  T  D  E  P  Y  T  H  T  L  L  K  T  R  K  L  P  N  N  F  S  P  R  T  K  I  S  I  R  N  S  R  V  F  S  T  S  I  L  P  N  S  I  L  *  Y  S  N  P  K  F  T  P  R  G  W  </first_frame>
            <second_frame>  I  K  Y  I  I  I  T  N  Q  N  K  K  I  Y  I  S  Y  T  N  M  M  K  *  Q  Y  H  F  F  S  S  L  D  E  H  K  D  N  P  K  Q  L  *  I  R  L  G  M  *  S  S  S  *  W  D  L  *  K  *  H  Q  K  S  K  L  *  F  L  L  F  T  L  I  S  T  *  K  K  N  R  N  M  Q  K  K  I  K  E  V  Q  F  S  C  *  V  Y  F  L  C  R  S  N  F  I  R  K  F  P  K  R  Q  E  *  M  *  L  L  S  T  D  E  L  I  Q  T  Q  Y  V  I  L  I  *  I  L  Y  T  D  I  L  K  D  P  L  T  N  L  I  H  I  H  Y  *  K  H  A  N  C  Q  T  I  F  L  Q  G  R  K  F  P  S  E  I  R  V  F  L  V  L  V  Y  F  Q  T  Q  F  Y  N  I  Q  I  L  N  S  R  L  E  D  G </second_frame>
            <third_frame>   L  N  I  S  *  S  Q  T  K  I  K  K  Y  I  Y  H  I  P  I  *  *  S  D  N  I  T  F  F  L  L  *  M  N  I  K  T  T  Q  N  S  Y  E  *  D  W  E  C  E  V  H  H  N  G  T  C  K  N  N  T  K  N  Q  N  Y  N  F  F  Y  L  P  S  S  R  H  E  K  K  I  E  T  C  K  R  K  *  R  K  S  N  F  L  A  R  F  I  F  C  V  V  L  I  L  L  E  N  F  Q  K  G  K  S  E  C  S  Y  *  V  L  T  S  S  F  K  L  S  M  *  F  *  F  K  S  Y  T  Q  I  Y  *  K  I  H  *  R  T  L  Y  T  Y  T  I  K  N  T  Q  I  A  K  Q  F  F  S  K  D  E  N  F  H  Q  K  F  A  C  F  *  Y  *  Y  T  S  K  L  N  F  I  I  F  K  S  *  I  H  A  S  R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19630" stop="19433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAHSNSVCNFDLNLIHRYIKRSTDEPYTHTLLKTRKLPNNFSPRTKISIRNSRVFSTSILPNSIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20924" PGL_stop="20394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20924" e_stop="20394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="20924" e_stop="20394" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20924" stop="20394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAATTATCACAATCCCTCAAAACTAATATTGCAAAATAAAATAAGTGATTAATAAAGTGATATAAAAAATTAAAAATTAAATTTTTACACTTGAGTCAAGACTACTTAAATATTCATAAATATAATTCATTCACTCTTTTCGGTCTCAAATATTAGTCATTTAATAAATTGAACTTGTTTCAAAATATTTGACTATTTAAGTATTCATGAATATAATAACAATGTTCCTTCAATTATTATCACGTTTTTCAATTTCAAATATTAGTCGTTTAACAAATTAAACTCGTTTCAAAATATTTGACTACGTAAGTATTCTTCGTGAATATAATAGTGAACCATCATAATATTCATTCATTTATTGTCACTCTCTTCCGTCTCAAATGTAAGTCGTTTGAAAAATTAAAACTTATTCCAAAATAATATTTGACTTTATAGACAAGCAAAAATAATTTAATTTACACGCTTTTTTCTAAATTAATTCATCCATAATTCTCTAATTAGTGAAGTATTAATTGATGAAGTGGGACAC</gDNA_template>
            <first_frame> T  N  Y  H  N  P  S  K  L  I  L  Q  N  K  I  S  D  *  *  S  D  I  K  N  *  K  L  N  F  Y  T  *  V  K  T  T  *  I  F  I  N  I  I  H  S  L  F  S  V  S  N  I  S  H  L  I  N  *  T  C  F  K  I  F  D  Y  L  S  I  H  E  Y  N  N  N  V  P  S  I  I  I  T  F  F  N  F  K  Y  *  S  F  N  K  L  N  S  F  Q  N  I  *  L  R  K  Y  S  S  *  I  *  *  *  T  I  I  I  F  I  H  L  L  S  L  S  S  V  S  N  V  S  R  L  K  N  *  N  L  F  Q  N  N  I  *  L  Y  R  Q  A  K  I  I  *  F  T  R  F  F  L  N  *  F  I  H  N  S  L  I  S  E  V  L  I  D  E  V  G  H </first_frame>
            <second_frame>  P  I  I  T  I  P  Q  N  *  Y  C  K  I  K  *  V  I  N  K  V  I  *  K  I  K  N  *  I  F  T  L  E  S  R  L  L  K  Y  S  *  I  *  F  I  H  S  F  R  S  Q  I  L  V  I  *  *  I  E  L  V  S  K  Y  L  T  I  *  V  F  M  N  I  I  T  M  F  L  Q  L  L  S  R  F  S  I  S  N  I  S  R  L  T  N  *  T  R  F  K  I  F  D  Y  V  S  I  L  R  E  Y  N  S  E  P  S  *  Y  S  F  I  Y  C  H  S  L  P  S  Q  M  *  V  V  *  K  I  K  T  Y  S  K  I  I  F  D  F  I  D  K  Q  K  *  F  N  L  H  A  F  F  *  I  N  S  S  I  I  L  *  L  V  K  Y  *  L  M  K  W  D   </second_frame>
            <third_frame>   Q  L  S  Q  S  L  K  T  N  I  A  K  *  N  K  *  L  I  K  *  Y  K  K  L  K  I  K  F  L  H  L  S  Q  D  Y  L  N  I  H  K  Y  N  S  F  T  L  F  G  L  K  Y  *  S  F  N  K  L  N  L  F  Q  N  I  *  L  F  K  Y  S  *  I  *  *  Q  C  S  F  N  Y  Y  H  V  F  Q  F  Q  I  L  V  V  *  Q  I  K  L  V  S  K  Y  L  T  T  *  V  F  F  V  N  I  I  V  N  H  H  N  I  H  S  F  I  V  T  L  F  R  L  K  C  K  S  F  E  K  L  K  L  I  P  K  *  Y  L  T  L  *  T  S  K  N  N  L  I  Y  T  L  F  S  K  L  I  H  P  *  F  S  N  *  *  S  I  N  *  *  S  G  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0034P21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24560" PGL_stop="25803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24560" e_stop="24719"/>
            <exon e_start="24802" e_stop="25045"/>
            <exon e_start="25146" e_stop="25803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24560" e_stop="24719" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="24720" i_stop="24801" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24802" e_stop="25045" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25046" i_stop="25145" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="25146" e_stop="25803" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24560" stop="24719"/>
              <exon start="24802" stop="25045"/>
              <exon start="25146" stop="25165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25022" stop="25045"/>
              <exon start="25146" stop="25657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25159" stop="25803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACACTGGAATGTTCTATGCCTGCATTATGCTTCCTGGTTTCTTCCTCTTCTTGATCGATCGATACTTGAGATTCTTGCAATCCAAGCAACAAGTTCGTTTGATTTCAGCCCGAGTTTTGACTTGTGAAACTGTTGAACTCAACTTCTCCAAAATATCAG : GTTTGGAGTACTCTCCTACGAGCATTATGTTCCTAAACGTGCCAAGCATATCCAAATTGCAGTGGCATCCATTCACTGTAACTTCAAACAGTAACCTAGAATCAGATACAATTAGTGTTGTCATCAAATGTGAAGGAAGCTGGACTAAGAAGCTTTACAGTGTCATGTCATTGCCTAAACCAGTCGATCGTCTTGATGTTTCTGTTGAAGGACCCTATGGACCTGCTTCCACTCATTTCCTAAG : GCATGATACATTGGTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTACAGCAAGTGCAGCCTTCCTATGGAACAAGAAGAAAAGTGCTAGGGAAACTAAGCAGATTCAGGACATGGCAGATTCAGCAAAATCTTTGAACTCATTAATAGCTTATGCTGATCAAGAGCTAGAAAGTCTTCCTCAACAGTCGCTC</gDNA_template>
            <first_frame> H  T  G  M  F  Y  A  C  I  M  L  P  G  F  F  L  F  L  I  D  R  Y  L  R  F  L  Q  S  K  Q  Q  V  R  L  I  S  A  R  V  L  T  C  E  T  V  E  L  N  F  S  K  I  S   : G  L  E  Y  S  P  T  S  I  M  F  L  N  V  P  S  I  S  K  L  Q  W  H  P  F  T  V  T  S  N  S  N  L  E  S  D  T  I  S  V  V  I  K  C  E  G  S  W  T  K  K  L  Y  S  V  M  S  L  P  K  P  V  D  R  L  D  V  S  V  E  G  P  Y  G  P  A  S  T  H  F  L  R :   H  D  T  L  V  L  I  S  G  G  S  G  I  T  P  F  I  S  I  V  R  E  L  I  H  M  S  S  T  L  K  C  K  T  P  K  I  L  L  V  S  V  F  R  N  T  S  Q  L  S  M  L  D  L  L  Y  P  I  A  G  T  P  S  G  C  S  S  N  L  D  L  Q  V  E  A  Y  I  T  R  E  I  E  P  A  Q  E  K  S  E  P  L  R  T  I  L  F  K  P  D  H  S  D  A  P  I  T  P  I  L  G  Q  N  N  W  L  W  L  A  A  I  I  S  S  S  F  A  L  Y  L  L  F  V  G  L  L  Y  Q  Y  Y  V  Y  P  M  D  H  G  T  N  Q  V  F  P  Y  H  T  R  A  L  F  N  M  L  F  I  A  A  A  I  V  I  T  A  S  A  A  F  L  W  N  K  K  K  S  A  R  E  T  K  Q  I  Q  D  M  A  D  S  A  K  S  L  N  S  L  I  A  Y  A  D  Q  E  L  E  S  L  P  Q  Q  S  L </first_frame>
            <second_frame>  T  L  E  C  S  M  P  A  L  C  F  L  V  S  S  S  S  *  S  I  D  T  *  D  S  C  N  P  S  N  K  F  V  *  F  Q  P  E  F  *  L  V  K  L  L  N  S  T  S  P  K  Y  Q  :  V  W  S  T  L  L  R  A  L  C  S  *  T  C  Q  A  Y  P  N  C  S  G  I  H  S  L  *  L  Q  T  V  T  *  N  Q  I  Q  L  V  L  S  S  N  V  K  E  A  G  L  R  S  F  T  V  S  C  H  C  L  N  Q  S  I  V  L  M  F  L  L  K  D  P  M  D  L  L  P  L  I  S  *   : G  M  I  H  W  C  *  S  V  E  G  V  E  *  L  H  S  F  P  S  S  E  S  *  F  I  *  A  Q  H  *  N  A  K  L  Q  R  S  Y  *  L  V  C  S  G  I  L  H  N  S  L  C  *  T  F  F  I  L  *  Q  A  L  L  Q  D  V  L  L  I  L  T  Y  K  L  R  L  I  *  P  E  R  L  N  Q  H  K  K  N  P  N  P  Y  G  P  F  C  S  N  L  T  T  L  M  H  P  *  P  P  F  *  A  R  T  I  G  S  G  L  Q  L  *  Y  R  L  H  L  L  C  T  F  Y  L  W  D  F  F  T  N  T  M  F  T  L  W  T  M  V  L  T  R  Y  S  H  T  T  Q  G  L  Y  S  T  C  C  L  *  Q  L  L  *  *  L  Q  Q  V  Q  P  S  Y  G  T  R  R  K  V  L  G  K  L  S  R  F  R  T  W  Q  I  Q  Q  N  L  *  T  H  *  *  L  M  L  I  K  S  *  K  V  F  L  N  S  R   </second_frame>
            <third_frame>   H  W  N  V  L  C  L  H  Y  A  S  W  F  L  P  L  L  D  R  S  I  L  E  I  L  A  I  Q  A  T  S  S  F  D  F  S  P  S  F  D  L  *  N  C  *  T  Q  L  L  Q  N  I  R :   F  G  V  L  S  Y  E  H  Y  V  P  K  R  A  K  H  I  Q  I  A  V  A  S  I  H  C  N  F  K  Q  *  P  R  I  R  Y  N  *  C  C  H  Q  M  *  R  K  L  D  *  E  A  L  Q  C  H  V  I  A  *  T  S  R  S  S  *  C  F  C  *  R  T  L  W  T  C  F  H  S  F  P  K  :  A  *  Y  I  G  V  D  Q  W  R  E  W  N  N  S  I  H  F  H  R  Q  R  A  D  S  Y  E  L  N  T  E  M  Q  N  S  K  D  L  I  S  *  C  V  Q  E  Y  F  T  T  L  Y  V  R  P  S  L  S  Y  S  R  H  S  F  R  M  F  F  *  S  *  P  T  S  *  G  L  Y  N  Q  R  D  *  T  S  T  R  K  I  R  T  P  T  D  H  F  V  Q  T  *  P  L  *  C  T  H  N  P  H  F  R  P  E  Q  L  A  L  A  C  S  Y  N  I  V  F  I  C  F  V  P  S  I  C  G  T  S  L  P  I  L  C  L  P  Y  G  P  W  Y  *  P  G  I  P  I  P  H  K  G  F  I  Q  H  V  V  Y  S  S  C  Y  S  N  Y  S  K  C  S  L  P  M  E  Q  E  E  K  C  *  G  N  *  A  D  S  G  H  G  R  F  S  K  I  F  E  L  I  N  S  L  C  *  S  R  A  R  K  S  S  S  T  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24560" stop="24719"/>
                    <exon start="24802" stop="25045"/>
                    <exon start="25146" stop="25803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTGMFYACIMLPGFFLFLIDRYLRFLQSKQQVRLISARVLTCETVELNFSKISGLEYSPTSIMFLNVPSISKLQWHPFTVTSNSNLESDTISVVIKCEGSWTKKLYSVMSLPKPVDRLDVSVEGPYGPASTHFLRHDTLVLISGGSGITPFISIVRELIHMSSTLKCKTPKILLVSVFRNTSQLSMLDLLYPIAGTPSGCSSNLDLQVEAYITREIEPAQEKSEPLRTILFKPDHSDAPITPILGQNNWLWLAAIISSSFALYLLFVGLLYQYYVYPMDHGTNQVFPYHTRALFNMLFIAAAIVITASAAFLWNKKKSARETKQIQDMADSAKSLNSLIAYADQELESLPQQSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28435" PGL_stop="26762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28435" e_stop="28321"/>
            <exon e_start="28244" e_stop="28167"/>
            <exon e_start="27715" e_stop="27599"/>
            <exon e_start="27414" e_stop="27352"/>
            <exon e_start="27273" e_stop="26762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="0.987"/>
          <exon-intron don_prob="0.828" acc_prob="0.583" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28435" e_stop="28321" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="28244" e_stop="28167" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27715" e_stop="27599" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.583">
            <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27414" e_stop="27352" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27351" i_stop="27274" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="27273" e_stop="26762" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28321"/>
              <exon start="28244" stop="28167"/>
              <exon start="27715" stop="27599"/>
              <exon start="27414" stop="27352"/>
              <exon start="27273" stop="26762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27174" stop="26770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCACATGTTGCTTCTGTTAAGAATATTTTAGAAAGTCATGCAAGCTATTTGATGTCTGGAAAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTG : GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG : CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG : GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAG : ACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGCATTACTGCATCACTTTTTCTAA</gDNA_template>
            <first_frame> C  T  C  C  F  C  *  E  Y  F  R  K  S  C  K  L  F  D  V  W  K  R  T  V  K  A  R  C  I  C  K  G  H  A  V  *  S  C   : G  I  F  A  A  R  K  I  W  K  C  S  S  G  Q  L  C  F  R  L  *  T  D  W  A  K   : A  S  D  G  N  I  A  K  S  F  R  C  R  V  P  F  V  S  Y  V  L  C  E  V  Q  R  V  D  C  S  I  G  H  T  F  E  A  V  *   : G  L  V  *  F  I  S  A  *  F  T  L  V  E  S  I  *  H  Y  F  K   : D  P  S  I  F  C  P  I  R  *  L  A  *  K  F  G  *  K  T  F  I  H  F  K  F  R  R  K  M  S  S  L  D  V  K  S  T  V  G  Q  L  C  *  K  M  V  K  R  A  S  S  E  I  F  Y  F  K  L  *  P  H  Q  L  E  I  S  I  N  V  Y  C  S  I  G  K  G  V  E  R  L  C  R  *  D  F  W  F  L  F  Y  F  T  Q  L  C  P  A  E  I  Y  F  V  D  R  C  I  I  A  I  S  S  L  W  F  P  W  S  C  F  F  F  M  I  Y  S  L  Y  Q  L  L  A  F  S  T  R  V  W  G  D  H  N  E  K  G  H  L  L  Y  E  R  S  D  L  P  M  N  R  E  *  R  R  F  C  A  L  L  H  H  F  F  * </first_frame>
            <second_frame>  A  H  V  A  S  V  K  N  I  L  E  S  H  A  S  Y  L  M  S  G  K  E  L  S  K  L  V  A  F  V  K  G  T  Q  F  D  L  V  :  E  Y  L  Q  R  E  R  Y  G  S  A  R  L  D  N  F  A  S  G  F  E  L  I  G  Q  K  :  L  Q  M  E  T  L  Q  S  R  L  D  A  E  F  L  L  S  H  M  C  S  V  K  F  K  E  W  I  V  V  L  A  T  L  L  R  R  S  E  :  V  L  F  D  L  F  Q  H  D  L  R  L  W  K  A  Y  S  I  T  L  K  :  T  H  P  S  F  V  Q  Y  D  D  L  L  E  S  L  D  E  K  L  S  S  T  S  N  L  E  E  K  *  A  L  W  M  *  R  A  P  L  V  S  F  A  R  K  W  L  K  E  L  P  V  R  S  S  T  S  S  F  N  P  T  N  L  K  S  A  *  M  S  T  A  L  L  G  R  G  L  S  G  S  A  D  E  I  F  G  S  C  S  T  L  P  N  C  V  L  Q  K  F  I  L  *  I  G  V  S  L  L  L  V  L  F  G  F  H  G  P  V  S  F  S  *  F  I  V  C  I  N  F  *  L  F  Q  Q  G  C  G  V  I  I  M  K  R  D  T  S  C  M  K  D  L  I  F  R  *  I  E  N  R  E  D  F  V  H  Y  C  I  T  F  S   </second_frame>
            <third_frame>   H  M  L  L  L  L  R  I  F  *  K  V  M  Q  A  I  *  C  L  E  K  N  C  Q  S  S  L  H  L  *  R  A  R  S  L  I  L  W :   N  I  C  S  E  K  D  M  E  V  L  V  W  T  T  L  L  Q  A  L  N  *  L  G  K  S :   F  R  W  K  H  C  K  V  V  *  M  Q  S  S  F  C  L  I  C  A  L  *  S  S  K  S  G  L  *  Y  W  P  H  F  *  G  G  L  R :   S  C  L  I  Y  F  S  M  I  Y  A  C  G  K  H  I  A  L  L  *  R :   P  I  H  L  L  S  N  T  M  T  C  L  K  V  W  M  K  N  F  H  P  L  Q  I  *  K  K  N  E  L  S  G  C  K  E  H  R  W  S  A  L  L  E  N  G  *  K  S  F  Q  *  D  L  L  L  Q  A  L  T  P  P  T  *  N  Q  H  K  C  L  L  L  Y  W  E  G  G  *  A  A  L  Q  M  R  F  L  V  P  V  L  L  Y  P  T  V  S  C  R  N  L  F  C  R  *  V  Y  H  C  Y  *  F  S  L  V  S  M  V  L  F  L  F  H  D  L  *  F  V  S  T  S  S  F  F  N  K  G  V  G  *  S  *  *  K  G  T  P  L  V  *  K  I  *  S  S  D  E  *  R  I  E  K  I  L  C  I  T  A  S  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28434" stop="28321"/>
                    <exon start="28244" stop="28167"/>
                    <exon start="27715" stop="27599"/>
                    <exon start="27414" stop="27352"/>
                    <exon start="27273" stop="27187"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGSARLDNFASGFELIGQKLQMETLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFDLFQHDLRLWKAYSITLKTHPSFVQYDDLLESLDEKLSSTSNLEEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27025" stop="26798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWFLFYFTQLCPAEIYFVDRCIIAISSLWFPWSCFFFMIYSLYQLLAFSTRVWGDHNEKGHLLYERSDLPMNRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28372" e_stop="28321"/>
            <exon e_start="28244" e_stop="28167"/>
            <exon e_start="27715" e_stop="27599"/>
            <exon e_start="27414" e_stop="26770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.583" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="28372" e_stop="28321" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28244" e_stop="28167" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27715" e_stop="27599" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.583">
            <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="27414" e_stop="26770" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28372" stop="28321"/>
              <exon start="28244" stop="28167"/>
              <exon start="27715" stop="27599"/>
              <exon start="27414" stop="27053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27174" stop="26770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTG : GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG : CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG : GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGCATTACTGCATCACT</gDNA_template>
            <first_frame> R  T  V  K  A  R  C  I  C  K  G  H  A  V  *  S  C   : G  I  F  A  A  R  K  I  W  K  C  S  S  G  Q  L  C  F  R  L  *  T  D  W  A  K   : A  S  D  G  N  I  A  K  S  F  R  C  R  V  P  F  V  S  Y  V  L  C  E  V  Q  R  V  D  C  S  I  G  H  T  F  E  A  V  *   : G  L  V  *  F  I  S  A  *  F  T  L  V  E  S  I  *  H  Y  F  K  G  K  F  D  T  L  F  L  W  L  H  *  L  Y  L  C  I  L  L  W  F  S  C  S  S  S  D  P  S  I  F  C  P  I  R  *  L  A  *  K  F  G  *  K  T  F  I  H  F  K  F  R  R  K  M  S  S  L  D  V  K  S  T  V  G  Q  L  C  *  K  M  V  K  R  A  S  S  E  I  F  Y  F  K  L  *  P  H  Q  L  E  I  S  I  N  V  Y  C  S  I  G  K  G  V  E  R  L  C  R  *  D  F  W  F  L  F  Y  F  T  Q  L  C  P  A  E  I  Y  F  V  D  R  C  I  I  A  I  S  S  L  W  F  P  W  S  C  F  F  F  M  I  Y  S  L  Y  Q  L  L  A  F  S  T  R  V  W  G  D  H  N  E  K  G  H  L  L  Y  E  R  S  D  L  P  M  N  R  E  *  R  R  F  C  A  L  L  H  H  </first_frame>
            <second_frame>  E  L  S  K  L  V  A  F  V  K  G  T  Q  F  D  L  V  :  E  Y  L  Q  R  E  R  Y  G  S  A  R  L  D  N  F  A  S  G  F  E  L  I  G  Q  K  :  L  Q  M  E  T  L  Q  S  R  L  D  A  E  F  L  L  S  H  M  C  S  V  K  F  K  E  W  I  V  V  L  A  T  L  L  R  R  S  E  :  V  L  F  D  L  F  Q  H  D  L  R  L  W  K  A  Y  S  I  T  L  K  V  N  L  I  H  Y  F  F  G  Y  I  D  F  I  C  A  S  Y  C  G  F  P  V  H  L  Q  T  H  P  S  F  V  Q  Y  D  D  L  L  E  S  L  D  E  K  L  S  S  T  S  N  L  E  E  K  *  A  L  W  M  *  R  A  P  L  V  S  F  A  R  K  W  L  K  E  L  P  V  R  S  S  T  S  S  F  N  P  T  N  L  K  S  A  *  M  S  T  A  L  L  G  R  G  L  S  G  S  A  D  E  I  F  G  S  C  S  T  L  P  N  C  V  L  Q  K  F  I  L  *  I  G  V  S  L  L  L  V  L  F  G  F  H  G  P  V  S  F  S  *  F  I  V  C  I  N  F  *  L  F  Q  Q  G  C  G  V  I  I  M  K  R  D  T  S  C  M  K  D  L  I  F  R  *  I  E  N  R  E  D  F  V  H  Y  C  I  T </second_frame>
            <third_frame>   N  C  Q  S  S  L  H  L  *  R  A  R  S  L  I  L  W :   N  I  C  S  E  K  D  M  E  V  L  V  W  T  T  L  L  Q  A  L  N  *  L  G  K  S :   F  R  W  K  H  C  K  V  V  *  M  Q  S  S  F  C  L  I  C  A  L  *  S  S  K  S  G  L  *  Y  W  P  H  F  *  G  G  L  R :   S  C  L  I  Y  F  S  M  I  Y  A  C  G  K  H  I  A  L  L  *  R  *  I  *  Y  I  I  S  L  V  T  L  T  L  F  V  H  L  T  V  V  F  L  F  I  F  R  P  I  H  L  L  S  N  T  M  T  C  L  K  V  W  M  K  N  F  H  P  L  Q  I  *  K  K  N  E  L  S  G  C  K  E  H  R  W  S  A  L  L  E  N  G  *  K  S  F  Q  *  D  L  L  L  Q  A  L  T  P  P  T  *  N  Q  H  K  C  L  L  L  Y  W  E  G  G  *  A  A  L  Q  M  R  F  L  V  P  V  L  L  Y  P  T  V  S  C  R  N  L  F  C  R  *  V  Y  H  C  Y  *  F  S  L  V  S  M  V  L  F  L  F  H  D  L  *  F  V  S  T  S  S  F  F  N  K  G  V  G  *  S  *  *  K  G  T  P  L  V  *  K  I  *  S  S  D  E  *  R  I  E  K  I  L  C  I  T  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28371" stop="28321"/>
                    <exon start="28244" stop="28167"/>
                    <exon start="27715" stop="27599"/>
                    <exon start="27414" stop="27187"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELSKLVAFVKGTQFDLVEYLQRERYGSARLDNFASGFELIGQKLQMETLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFDLFQHDLRLWKAYSITLKVNLIHYFFGYIDFICASYCGFPVHLQTHPSFVQYDDLLESLDEKLSSTSNLEEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27025" stop="26798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWFLFYFTQLCPAEIYFVDRCIIAISSLWFPWSCFFFMIYSLYQLLAFSTRVWGDHNEKGHLLYERSDLPMNRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34166" PGL_stop="32622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34166" e_stop="34040"/>
            <exon e_start="33903" e_stop="33729"/>
            <exon e_start="33632" e_stop="33579"/>
            <exon e_start="32801" e_stop="32622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.903" e_score="0.969"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="34166" e_stop="34040" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.903">
            <gDNA_intron_boundary i_start="34039" i_stop="33904" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33903" e_stop="33729" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="33728" i_stop="33633" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33632" e_stop="33579" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33578" i_stop="32802" i_length="777"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32801" e_stop="32622" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34166" stop="34040"/>
              <exon start="33903" stop="33729"/>
              <exon start="33632" stop="33579"/>
              <exon start="32801" stop="32622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCATGACTGCAAAGAGCCATCCTGCATCAATGCGTTTTATTCCTGATCAGCTCCCAAGAGAAGGCATTGCAGGAAATGGTGGTCTGCCAACTTCTTTGGATCTGTCAGTCCGAGAGCCTACCCG : ATGCTTAATACTAAGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGAGAACTTACGGACTCCGTAGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCAAGCTTGATTGAGGAAGTTTCATGGTTAGACTATGGCCACCGTGGAATGCAG : GTTTGGTATCCATCTCCTGGTGCTGATGTTTTTAAGCAAGAGGATTTTTTGCAG : TTGGATCCGGAGCTGGATTTTGATCGTGAGGTTTATCCTCTTGGTTTGCTTCCAAATGCTGGAGTTGTAGTTGGCGTCTCCCAGAGAATGTCATTTTCCGCATGTACAGAGTTTCCATGTTTCGAGCCATCACCTCAAGCTCAGACTATTTTGCATTGCCTACTTCGACATCTTCTACAG</gDNA_template>
            <first_frame> Q  S  *  L  Q  R  A  I  L  H  Q  C  V  L  F  L  I  S  S  Q  E  K  A  L  Q  E  M  V  V  C  Q  L  L  W  I  C  Q  S  E  S  L  P   : D  A  *  Y  *  G  Q  M  E  S  F  H  F  L  I  W  M  R  G  E  K  E  N  L  R  T  P  *  S  C  F  G  L  P  V  V  S  Q  R  R  K  Q  A  *  L  R  K  F  H  G  *  T  M  A  T  V  E  C  R :   F  G  I  H  L  L  V  L  M  F  L  S  K  R  I  F  C  S :   W  I  R  S  W  I  L  I  V  R  F  I  L  L  V  C  F  Q  M  L  E  L  *  L  A  S  P  R  E  C  H  F  P  H  V  Q  S  F  H  V  S  S  H  H  L  K  L  R  L  F  C  I  A  Y  F  D  I  F  Y   </first_frame>
            <second_frame>  N  H  D  C  K  E  P  S  C  I  N  A  F  Y  S  *  S  A  P  K  R  R  H  C  R  K  W  W  S  A  N  F  F  G  S  V  S  P  R  A  Y  P  :  M  L  N  T  K  D  K  W  R  A  F  T  S  *  F  G  *  G  E  R  K  R  T  Y  G  L  R  R  V  V  L  G  Y  L  W  S  V  R  G  E  S  K  L  D  *  G  S  F  M  V  R  L  W  P  P  W  N  A   : G  L  V  S  I  S  W  C  *  C  F  *  A  R  G  F  F  A   : V  G  S  G  A  G  F  *  S  *  G  L  S  S  W  F  A  S  K  C  W  S  C  S  W  R  L  P  E  N  V  I  F  R  M  Y  R  V  S  M  F  R  A  I  T  S  S  S  D  Y  F  A  L  P  T  S  T  S  S  T  </second_frame>
            <third_frame>   I  M  T  A  K  S  H  P  A  S  M  R  F  I  P  D  Q  L  P  R  E  G  I  A  G  N  G  G  L  P  T  S  L  D  L  S  V  R  E  P  T  R :   C  L  I  L  R  T  N  G  E  L  S  L  L  D  L  D  E  G  R  E  R  E  L  T  D  S  V  E  L  F  W  V  T  C  G  Q  S  E  E  K  A  S  L  I  E  E  V  S  W  L  D  Y  G  H  R  G  M  Q  :  V  W  Y  P  S  P  G  A  D  V  F  K  Q  E  D  F  L  Q  :  L  D  P  E  L  D  F  D  R  E  V  Y  P  L  G  L  L  P  N  A  G  V  V  V  G  V  S  Q  R  M  S  F  S  A  C  T  E  F  P  C  F  E  P  S  P  Q  A  Q  T  I  L  H  C  L  L  R  H  L  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34164" stop="34040"/>
                    <exon start="33903" stop="33729"/>
                    <exon start="33632" stop="33579"/>
                    <exon start="32801" stop="32622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMTAKSHPASMRFIPDQLPREGIAGNGGLPTSLDLSVREPTRCLILRTNGELSLLDLDEGRERELTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPSPGADVFKQEDFLQLDPELDFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44167" PGL_stop="43635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44167" e_stop="43635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="44167" e_stop="43635" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44167" stop="43635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43875" stop="43683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGGATATCCCCCACAACCCCATGGTAATCCACCACCACCACAACATCCTCAGGGTTATCCTCCATCTCAGCAAAACCCTCAGGAGTACCAACCACCTCAGCAACAACCTCAGGATTATCCACCACCTCAGCAGCAGCCTCAGGGTTATCCACCACAACAGCAGCCTCAAGGTTATCCACCACCACAGCAGACGCCTCAGGGTTACCCACCACCACAGCAGCAGCCTCAGGGTTACCCACCACCACAGCAGCAGCCTCAGGGTTACCCATCACCACAGCAGCCACCTCAGGGTTACCCACCAGCCAATTATCCCCCTCCTGGTGCTGGAGAACCCAAATCTAATCATGTTCAATGAGTTGAAACTTTCTTTTTTTTGGCAGGAAAATCCATTGATCTCTACTTGAATTTAGTACAATACTTTTAGATTATTCTTCATTTCTTAGCTTGTAGATTATGGTAATTCAGATAATAATTGACTTGTGTAAGAGGATGACTTATTCTATGCGGAGTGATCATTCAATATTAAGAT</gDNA_template>
            <first_frame> L  K  D  I  P  H  N  P  M  V  I  H  H  H  H  N  I  L  R  V  I  L  H  L  S  K  T  L  R  S  T  N  H  L  S  N  N  L  R  I  I  H  H  L  S  S  S  L  R  V  I  H  H  N  S  S  L  K  V  I  H  H  H  S  R  R  L  R  V  T  H  H  H  S  S  S  L  R  V  T  H  H  H  S  S  S  L  R  V  T  H  H  H  S  S  H  L  R  V  T  H  Q  P  I  I  P  L  L  V  L  E  N  P  N  L  I  M  F  N  E  L  K  L  S  F  F  W  Q  E  N  P  L  I  S  T  *  I  *  Y  N  T  F  R  L  F  F  I  S  *  L  V  D  Y  G  N  S  D  N  N  *  L  V  *  E  D  D  L  F  Y  A  E  *  S  F  N  I  K   </first_frame>
            <second_frame>  S  R  I  S  P  T  T  P  W  *  S  T  T  T  T  T  S  S  G  L  S  S  I  S  A  K  P  S  G  V  P  T  T  S  A  T  T  S  G  L  S  T  T  S  A  A  A  S  G  L  S  T  T  T  A  A  S  R  L  S  T  T  T  A  D  A  S  G  L  P  T  T  T  A  A  A  S  G  L  P  T  T  T  A  A  A  S  G  L  P  I  T  T  A  A  T  S  G  L  P  T  S  Q  L  S  P  S  W  C  W  R  T  Q  I  *  S  C  S  M  S  *  N  F  L  F  F  G  R  K  I  H  *  S  L  L  E  F  S  T  I  L  L  D  Y  S  S  F  L  S  L  *  I  M  V  I  Q  I  I  I  D  L  C  K  R  M  T  Y  S  M  R  S  D  H  S  I  L  R  </second_frame>
            <third_frame>   Q  G  Y  P  P  Q  P  H  G  N  P  P  P  P  Q  H  P  Q  G  Y  P  P  S  Q  Q  N  P  Q  E  Y  Q  P  P  Q  Q  Q  P  Q  D  Y  P  P  P  Q  Q  Q  P  Q  G  Y  P  P  Q  Q  Q  P  Q  G  Y  P  P  P  Q  Q  T  P  Q  G  Y  P  P  P  Q  Q  Q  P  Q  G  Y  P  P  P  Q  Q  Q  P  Q  G  Y  P  S  P  Q  Q  P  P  Q  G  Y  P  P  A  N  Y  P  P  P  G  A  G  E  P  K  S  N  H  V  Q  *  V  E  T  F  F  F  L  A  G  K  S  I  D  L  Y  L  N  L  V  Q  Y  F  *  I  I  L  H  F  L  A  C  R  L  W  *  F  R  *  *  L  T  C  V  R  G  *  L  I  L  C  G  V  I  I  Q  Y  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44167" stop="43760"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKDIPHNPMVIHHHHNILRVILHLSKTLRSTNHLSNNLRIIHHLSSSLRVIHHNSSLKVIHHHSRRLRVTHHHSSSLRVTHHHSSSLRVTHHHSSHLRVTHQPIIPLLVLENPNLIMFNELKLSFFWQENPLIST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44165" stop="43809"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGYPPQPHGNPPPPQHPQGYPPSQQNPQEYQPPQQQPQDYPPPQQQPQGYPPQQQPQGYPPPQQTPQGYPPPQQQPQGYPPPQQQPQGYPSPQQPPQGYPPANYPPPGAGEPKSNHVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49407" PGL_stop="50063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49407" e_stop="50063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="49407" e_stop="50063" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49407" stop="50063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAACCCCAACCCCCATACCCATACACCAGTGGTCATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTTTTAGTATCAGTGGTTATCTTCTTCTCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTTGAAGAGATTCTTTTCTCCATCTTTCTCTACCTAAAAAAGGAGATGAAGTAAAAAGTTATAAGTAATAAAAAAGCTGATGAAAAAAAATCGTCGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGTAGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAAGGAAGTTTAGGTTTTACTTTTTTTTTTTTCATTTTTTTTACTTTAAAATAATAATTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAATACATATCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTATGTTTTGTTTATTCTCAAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGATAGTACGTCTAGTTAAAGTGTTTAAATGAATAATCGGGACAAGTTTAATTGACCGCATATGACCTTGACCAAAATAAAATTTAA</gDNA_template>
            <first_frame> P  T  P  T  P  I  P  I  H  Q  W  S  S  S  S  P  I  I  L  M  I  S  K  F  L  V  S  V  V  I  F  F  S  H  H  S  N  G  F  K  I  L  S  I  L  F  H  L  *  I  F  *  R  D  S  F  L  H  L  S  L  P  K  K  G  D  E  V  K  S  Y  K  *  *  K  S  *  *  K  K  I  V  G  L  K  M  E  L  Y  R  E  G  R  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  K  E  V  *  V  L  L  F  F  F  S  F  F  L  L  *  N  N  N  Y  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  I  H  I  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  V  L  F  I  L  K  K  M  F  K  W  F  K  F  R  M  V  E  V  F  N  R  *  Y  V  *  L  K  C  L  N  E  *  S  G  Q  V  *  L  T  A  Y  D  L  D  Q  N  K  I  * </first_frame>
            <second_frame>  Q  P  Q  P  P  Y  P  Y  T  S  G  H  L  L  P  P  S  F  *  *  F  Q  N  F  *  Y  Q  W  L  S  S  S  P  T  I  L  M  V  S  K  F  L  A  F  C  F  I  Y  K  F  F  E  E  I  L  F  S  I  F  L  Y  L  K  K  E  M  K  *  K  V  I  S  N  K  K  A  D  E  K  K  S  S  G  *  R  W  N  C  T  G  R  G  G  *  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  R  K  F  R  F  Y  F  F  F  F  H  F  F  Y  F  K  I  I  I  I  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  Y  I  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  S  S  M  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  D  S  T  S  S  *  S  V  *  M  N  N  R  D  K  F  N  *  P  H  M  T  L  T  K  I  K  F   </second_frame>
            <third_frame>   N  P  N  P  H  T  H  T  P  V  V  I  F  F  P  H  H  S  N  D  F  K  I  F  S  I  S  G  Y  L  L  L  P  P  F  *  W  F  Q  N  S  *  H  F  V  S  F  I  N  F  L  K  R  F  F  S  P  S  F  S  T  *  K  R  R  *  S  K  K  L  *  V  I  K  K  L  M  K  K  N  R  R  V  K  D  G  T  V  Q  G  G  E  G  S  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  G  S  L  G  F  T  F  F  F  F  I  F  F  T  L  K  *  *  L  F  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  Y  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  P  L  C  F  V  Y  S  Q  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  Q  *  I  V  R  L  V  K  V  F  K  *  I  I  G  T  S  L  I  D  R  I  *  P  *  P  K  *  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0034P21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="56928" PGL_stop="58177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56928" e_stop="57148"/>
            <exon e_start="57232" e_stop="57296"/>
            <exon e_start="57826" e_stop="57905"/>
            <exon e_start="58107" e_stop="58177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.692" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.195" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56928" e_stop="57148" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.692" acc_prob="0.964">
            <gDNA_intron_boundary i_start="57149" i_stop="57231" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57232" e_stop="57296" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.195">
            <gDNA_intron_boundary i_start="57297" i_stop="57825" i_length="529"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57826" e_stop="57905" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57906" i_stop="58106" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="58107" e_stop="58177" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56928" stop="57148"/>
              <exon start="57232" stop="57296"/>
              <exon start="57826" stop="57905"/>
              <exon start="58107" stop="58177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56977" stop="57148"/>
              <exon start="57232" stop="57296"/>
              <exon start="57826" stop="57905"/>
              <exon start="58107" stop="58124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56977" stop="57148"/>
              <exon start="57232" stop="57296"/>
              <exon start="57826" stop="57905"/>
              <exon start="58107" stop="58124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTAAGTTATATGATGCAAGTGATAAATCTGTTAGCTTTTATATCATATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAG : TTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAG : GACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAG : GCATTTGCTGAATGGGTTCTTTACACATCAAGTGGTATCTCAAGTGGCCTGTATCATGCATGTGATCTTGG</gDNA_template>
            <first_frame> F  F  K  L  Y  D  A  S  D  K  S  V  S  F  Y  I  I  Y  A  R  G  G  T  W  S  F  G  L  R  H  P  I  S  N  R  H  S  S  T  V  E  T  T  M  S  I  S  L  E  R  C  P  A  K  C  S  S  H  G  A  C  K  S  V  L  D  S  S  G  L  T  F  Y  S :   F  C  D  C  D  R  R  T  G  G  F  D  C  S  V  E  L  V  S  S  S   : G  Q  M  W  Q  S  I  S  L  I  G  S  N  A  A  A  L  L  P  A  Y  W  A  L  R  H  K  :  A  F  A  E  W  V  L  Y  T  S  S  G  I  S  S  G  L  Y  H  A  C  D  L   </first_frame>
            <second_frame>  F  L  S  Y  M  M  Q  V  I  N  L  L  A  F  I  S  Y  M  L  E  E  E  H  G  V  L  G  *  G  T  Q  F  Q  T  G  I  V  R  Q  L  K  L  P  C  L  S  H  *  R  D  A  Q  R  N  A  L  R  T  G  H  A  S  L  C  W  I  Q  V  V  S  H  S  T   : V  S  V  I  V  I  D  A  L  E  A  L  I  A  V  L  N  W  F  L  L  Q  :  D  K  C  G  N  R  F  P  L  L  D  P  M  L  Q  L  C  S  L  L  T  G  P  S  V  I  R :   H  L  L  N  G  F  F  T  H  Q  V  V  S  Q  V  A  C  I  M  H  V  I  L  </second_frame>
            <third_frame>   F  *  V  I  *  C  K  *  *  I  C  *  L  L  Y  H  I  C  *  R  R  N  M  E  F  W  V  K  A  P  N  F  K  Q  A  *  F  D  S  *  N  Y  H  V  Y  L  T  R  E  M  P  S  E  M  L  F  A  R  G  M  Q  V  C  V  G  F  K  W  S  H  I  L  Q  :  F  L  *  L  *  S  T  H  W  R  L  *  L  Q  C  *  T  G  F  F  F  R :   T  N  V  A  I  D  F  P  Y  W  I  Q  C  C  S  F  A  P  C  L  L  G  P  P  S  *   : G  I  C  *  M  G  S  L  H  I  K  W  Y  L  K  W  P  V  S  C  M  *  S  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56928" stop="57148"/>
                    <exon start="57232" stop="57296"/>
                    <exon start="57826" stop="57905"/>
                    <exon start="58107" stop="58175"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFKLYDASDKSVSFYIIYARGGTWSFGLRHPISNRHSSTVETTMSISLERCPAKCSSHGACKSVLDSSGLTFYSFCDCDRRTGGFDCSVELVSSSGQMWQSISLIGSNAAALLPAYWALRHKAFAEWVLYTSSGISSGLYHACDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58570" PGL_stop="59392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58570" e_stop="58659"/>
            <exon e_start="58778" e_stop="58930"/>
            <exon e_start="59026" e_stop="59392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.954" e_score="0.978"/>
          <exon-intron don_prob="0.776" acc_prob="0.554" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="58570" e_stop="58659" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.954">
            <gDNA_intron_boundary i_start="58660" i_stop="58777" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58778" e_stop="58930" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.554">
            <gDNA_intron_boundary i_start="58931" i_stop="59025" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59026" e_stop="59392" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58570" stop="58659"/>
              <exon start="58778" stop="58930"/>
              <exon start="59026" stop="59392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTCTGTTCATTGGGTTCCTCATTGAATTCTTTAGTCATCATAGATGGATTTCCTTTTCAACAGAAATTTGTTTGAACATGCTCAACAG : ATGGGAAACTGTAAAAGCATGGGTTCATAATTTCATTCGGTCTCTTCTGAAGCGCTTTCGGTGGCGCTTTCTACTTGCGGGATTCACTGCATTAGCAATAGCTGCTATTAGCTGGAAACTTGAAACAAGTCAAAATTACTGGATATGGCACAG : TGCATGGCATGTTACGATATATACTTCTTCATTTCTTTTTCTCTGTTCAAAAGCAACAGCAGTTAACTGTGATAACGAACAACCTCGATCAGAGAACTATGAGTTGGCTCGGCAAAATTCTTTCAATGGTAGTAGCGAAAGAGGTGGTAGATAGTTCGTAATAGAATCTACTTCAGCTCAAGCACATAACATATAGAGGCTAGAGCTGCTTGATGCCGAGAACGTACGATGAACTGCACCAAGAAGGCACTTCTCTTCATTAGGCAAGTGATTACAAGCAAATGTTTGTCAATCGTTTTTAACAATAAAAAAAAATGTTTGTTAGTCATTGTCAAATAGTTTTCTTTTTCTTTAAAGTTTTACTTGC</gDNA_template>
            <first_frame> G  S  V  H  W  V  P  H  *  I  L  *  S  S  *  M  D  F  L  F  N  R  N  L  F  E  H  A  Q  Q  :  M  G  N  C  K  S  M  G  S  *  F  H  S  V  S  S  E  A  L  S  V  A  L  S  T  C  G  I  H  C  I  S  N  S  C  Y  *  L  E  T  *  N  K  S  K  L  L  D  M  A  Q  :  C  M  A  C  Y  D  I  Y  F  F  I  S  F  S  L  F  K  S  N  S  S  *  L  *  *  R  T  T  S  I  R  E  L  *  V  G  S  A  K  F  F  Q  W  *  *  R  K  R  W  *  I  V  R  N  R  I  Y  F  S  S  S  T  *  H  I  E  A  R  A  A  *  C  R  E  R  T  M  N  C  T  K  K  A  L  L  F  I  R  Q  V  I  T  S  K  C  L  S  I  V  F  N  N  K  K  K  C  L  L  V  I  V  K  *  F  S  F  S  L  K  F  Y  L  </first_frame>
            <second_frame>  A  L  F  I  G  F  L  I  E  F  F  S  H  H  R  W  I  S  F  S  T  E  I  C  L  N  M  L  N  R :   W  E  T  V  K  A  W  V  H  N  F  I  R  S  L  L  K  R  F  R  W  R  F  L  L  A  G  F  T  A  L  A  I  A  A  I  S  W  K  L  E  T  S  Q  N  Y  W  I  W  H  S :   A  W  H  V  T  I  Y  T  S  S  F  L  F  L  C  S  K  A  T  A  V  N  C  D  N  E  Q  P  R  S  E  N  Y  E  L  A  R  Q  N  S  F  N  G  S  S  E  R  G  G  R  *  F  V  I  E  S  T  S  A  Q  A  H  N  I  *  R  L  E  L  L  D  A  E  N  V  R  *  T  A  P  R  R  H  F  S  S  L  G  K  *  L  Q  A  N  V  C  Q  S  F  L  T  I  K  K  N  V  C  *  S  L  S  N  S  F  L  F  L  *  S  F  T  C </second_frame>
            <third_frame>   L  C  S  L  G  S  S  L  N  S  L  V  I  I  D  G  F  P  F  Q  Q  K  F  V  *  T  C  S  T   : D  G  K  L  *  K  H  G  F  I  I  S  F  G  L  F  *  S  A  F  G  G  A  F  Y  L  R  D  S  L  H  *  Q  *  L  L  L  A  G  N  L  K  Q  V  K  I  T  G  Y  G  T   : V  H  G  M  L  R  Y  I  L  L  H  F  F  F  S  V  Q  K  Q  Q  Q  L  T  V  I  T  N  N  L  D  Q  R  T  M  S  W  L  G  K  I  L  S  M  V  V  A  K  E  V  V  D  S  S  *  *  N  L  L  Q  L  K  H  I  T  Y  R  G  *  S  C  L  M  P  R  T  Y  D  E  L  H  Q  E  G  T  S  L  H  *  A  S  D  Y  K  Q  M  F  V  N  R  F  *  Q  *  K  K  M  F  V  S  H  C  Q  I  V  F  F  F  F  K  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58571" stop="58659"/>
                    <exon start="58778" stop="58930"/>
                    <exon start="59026" stop="59179"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALFIGFLIEFFSHHRWISFSTEICLNMLNRWETVKAWVHNFIRSLLKRFRWRFLLAGFTALAIAAISWKLETSQNYWIWHSAWHVTIYTSSFLFLCSKATAVNCDNEQPRSENYELARQNSFNGSSERGGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="64801" PGL_stop="68634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64801" e_stop="64848"/>
            <exon e_start="66555" e_stop="66703"/>
            <exon e_start="67332" e_stop="67710"/>
            <exon e_start="67841" e_stop="67950"/>
            <exon e_start="68200" e_stop="68634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.302" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.803" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64801" e_stop="64848" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64849" i_stop="66554" i_length="1706"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66555" e_stop="66703" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67332" e_stop="67710" e_length="379"/>
          </exon>
          <intron i_serial="3" don_prob="0.302" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67841" e_stop="67950" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.813" acc_prob="0.803">
            <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68200" e_stop="68634" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64801" stop="64848"/>
              <exon start="66555" stop="66703"/>
              <exon start="67332" stop="67710"/>
              <exon start="67841" stop="67919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64802" stop="64848"/>
              <exon start="66555" stop="66703"/>
              <exon start="67332" stop="67655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64823" stop="64848"/>
              <exon start="66555" stop="66703"/>
              <exon start="67332" stop="67710"/>
              <exon start="67841" stop="67917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66573" stop="66703"/>
              <exon start="67332" stop="67588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66677" stop="66703"/>
              <exon start="67332" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66678" stop="66703"/>
              <exon start="67332" stop="67710"/>
              <exon start="67841" stop="67916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67393" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67400" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67522" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67562" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67693" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67693" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67693" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67860" stop="67950"/>
              <exon start="68200" stop="68630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="67950"/>
              <exon start="68200" stop="68634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACAATAAAAAAAGAATCTTTAGCAAGGAAGGTTTTTTTTTTTCT : TGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT : TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG : AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG : GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTCAATTG</gDNA_template>
            <first_frame> K  H  N  K  K  R  I  F  S  K  E  G  F  F  F  S  :  *  I  V  P  L  H  T  D  G  E  G  N  V  L  G  N  K  T  Y  T  W  I  T  K  T  S  A  R  W  V  V  A  V  A  L  Q  G  S  L  P  S  F  M  E  H  K  Y  F  T  I :   F  L  Q  L  L  K  S  M  S  P  *  H  L  M  I  V  L  L  L  H  L  P  L  S  S  W  M  I  *  T  *  I  D  Q  H  P  T  L  T  A  L  P  L  H  Q  F  H  L  K  *  I  W  G  I  H  S  Q  E  E  V  P  S  S  *  M  K  H  Y  F  N  V  A  M  R  *  L  I  V  K  I  L  S  F  L  I  A  K  L  K  Q  S  L  F  L  P  P  *  R  K  Q  G  L  T  L  *  N  L  I  H  L  L  L  N  Q  Q  K  K  R  M  F  V  L  L  V  L  K  :  N  M  M  S  T  I  Q  E  *  S  Q  N  V  T  T  I  F  I  F  H  A  F  L  S  G  W  K  E  V  K  H  A  Q  Y  A  I  R :   K  W  Y  T  K  L  Y  E  N  *  L  K  V  P  *  M  L  V  V  N  M  R  L  L  F  F  T  W  R  L  G  L  Y  S  L  V  H  S  *  K  C  K  F  S  M  Y  M  K  L  T  L  V  N  P  A  L  D  E  D  A  S  C  I  Y  M  L  M  G  V  N  L  R  A  K  N  K  K  T  S  C  S  F  A  F  G  A  W  K  I  K  F  *  K  R  V  F  L  V  M  I  L  L  S  S  K  C  C  T  V  N  P  F  G  G  C  N  F  M  F  N  C  C  T  D  S  S  V  K  D  Y  G  N  G  I  V  I  K  V  S  *  T  H  F  N   </first_frame>
            <second_frame>  N  T  I  K  K  E  S  L  A  R  K  V  F  F  F  L :   E  L  S  L  F  I  Q  T  E  K  V  M  C  W  E  I  R  H  I  L  G  *  L  K  H  L  Q  D  G  W  L  L  L  L  F  K  E  A  S  P  A  S  W  N  T  S  I  L  L   : F  S  S  S  F  *  R  V  *  V  P  D  I  *  *  *  C  C  Y  C  I  Y  L  *  A  P  G  *  F  K  R  R  *  I  N  T  R  H  L  P  L  S  P  C  T  N  S  I  *  S  R  F  G  A  S  T  V  K  R  R  F  P  V  H  R  *  N  I  T  S  T  *  L  *  D  N  *  L  *  R  Y  *  V  F  *  S  Q  S  *  N  R  V  S  S  C  L  P  K  E  S  R  D  *  P  C  K  I  *  S  I  Y  Y  *  I  S  R  R  R  G  C  L  S  Y  L  S  *  R :   I  *  C  R  Q  S  K  N  S  L  K  M  *  P  P  F  S  S  F  M  H  S  *  V  D  G  K  K  S  N  M  P  N  M  R  S   : G  N  G  I  R  S  S  M  K  T  N  *  K  F  L  R  C  W  S  S  T  *  G  C  C  F  S  L  G  G  L  A  C  I  H  L  F  T  H  E  S  V  N  S  L  C  I  *  S  L  R  W  *  I  P  P  L  M  K  M  R  V  A  Y  I  C  *  W  E  L  I  C  G  R  R  T  K  K  Q  V  V  V  L  H  L  V  P  G  R  L  N  S  E  N  A  S  F  W  S  *  F  F  *  V  P  S  V  V  Q  *  T  L  L  V  V  V  I  L  C  S  I  A  V  Q  I  L  L  S  K  I  M  A  M  A  *  S  L  K  F  H  R  L  I  S  I  </second_frame>
            <third_frame>   T  Q  *  K  K  N  L  *  Q  G  R  F  F  F  F   : L  N  C  P  S  S  Y  R  R  R  R  *  C  V  G  K  *  D  I  Y  L  D  N  *  N  I  C  K  M  G  G  C  C  C  S  S  R  K  P  P  Q  L  H  G  T  Q  V  F  Y  Y  :  F  P  P  A  S  E  E  Y  E  S  L  T  S  D  D  S  A  A  I  A  F  T  S  E  L  L  D  D  L  N  V  D  R  S  T  P  D  T  Y  R  S  P  P  A  P  I  P  F  E  V  D  L  G  H  P  Q  S  R  G  G  S  Q  F  I  D  E  T  L  L  Q  R  S  Y  E  I  T  N  C  K  D  I  K  F  S  D  R  K  A  E  T  E  S  L  L  A  S  L  K  K  A  G  I  D  L  V  K  S  N  P  S  I  I  K  S  A  E  E  E  D  V  C  P  T  C  L  E   : E  Y  D  V  D  N  P  R  I  V  S  K  C  N  H  H  F  H  L  S  C  I  L  E  W  M  E  R  S  Q  T  C  P  I  C  D  Q  :  E  M  V  Y  E  A  L  *  K  L  I  K  S  S  L  D  A  G  R  Q  H  E  A  V  V  F  H  L  A  A  W  P  V  F  T  C  S  L  M  K  V  *  I  L  Y  V  Y  E  A  Y  V  G  K  S  R  P  *  *  R  C  E  L  H  I  Y  A  D  G  S  *  F  A  G  E  E  Q  K  N  K  L  *  F  C  I  W  C  L  E  D  *  I  L  K  T  R  L  F  G  H  D  S  S  E  F  Q  V  L  Y  S  E  P  F  W  W  L  *  F  Y  V  Q  L  L  Y  R  F  F  C  Q  R  L  W  Q  W  H  S  H  *  S  F  I  D  S  F  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66626" stop="66703"/>
                    <exon start="67332" stop="67710"/>
                    <exon start="67841" stop="67950"/>
                    <exon start="68200" stop="68223"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NICKMGGCCCSSRKPPQLHGTQVFYYFPPASEEYESLTSDDSAAIAFTSELLDDLNVDRSTPDTYRSPPAPIPFEVDLGHPQSRGGSQFIDETLLQRSYEITNCKDIKFSDRKAETESLLASLKKAGIDLVKSNPSIIKSAEEEDVCPTCLEEYDVDNPRIVSKCNHHFHLSCILEWMERSQTCPICDQEMVYEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86895" PGL_stop="87322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86895" e_stop="87322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="86895" e_stop="87322" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86895" stop="87322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGTCAGTAGAAAATGTTTCGAAGCTTGATAGTGTTCTTGTTAATCGTTTGTTAAAAGAGGTTAATGGGTGTTTGTGTTTTAGGCCATTTCCTCGGATGCTCGGTGATGGGAAGGCGGTGGATTTGTGCGAACTGTTCTTGGTTGTGAGGGAGAAGGGTGGGTACGAAAGGGTTTGTGCAAGTCGGTCTTGGGGTGTGGTTGCTGTAGAGTGTGGGTTTGATTTAACAACTGGTTCGGCTTTGAAGTTGGTGTATGTTAAGTACTTGGATGCATTGAACAGAGCAATGGTGAAACTTGAGCAACCTGATAATGAAAAGAGTGAGGTTAAGAAGAGTGCTTTGGGTTTTAGTGCTGTTCGGATGGACCTTGAGCTGGATTTGAAGGGGGTTTTGATGGAAATTTGTGATGAAAAAAAGAAAGACGAAG</gDNA_template>
            <first_frame> Q  V  S  R  K  C  F  E  A  *  *  C  S  C  *  S  F  V  K  R  G  *  W  V  F  V  F  *  A  I  S  S  D  A  R  *  W  E  G  G  G  F  V  R  T  V  L  G  C  E  G  E  G  W  V  R  K  G  L  C  K  S  V  L  G  C  G  C  C  R  V  W  V  *  F  N  N  W  F  G  F  E  V  G  V  C  *  V  L  G  C  I  E  Q  S  N  G  E  T  *  A  T  *  *  *  K  E  *  G  *  E  E  C  F  G  F  *  C  C  S  D  G  P  *  A  G  F  E  G  G  F  D  G  N  L  *  *  K  K  E  R  R   </first_frame>
            <second_frame>  R  S  V  E  N  V  S  K  L  D  S  V  L  V  N  R  L  L  K  E  V  N  G  C  L  C  F  R  P  F  P  R  M  L  G  D  G  K  A  V  D  L  C  E  L  F  L  V  V  R  E  K  G  G  Y  E  R  V  C  A  S  R  S  W  G  V  V  A  V  E  C  G  F  D  L  T  T  G  S  A  L  K  L  V  Y  V  K  Y  L  D  A  L  N  R  A  M  V  K  L  E  Q  P  D  N  E  K  S  E  V  K  K  S  A  L  G  F  S  A  V  R  M  D  L  E  L  D  L  K  G  V  L  M  E  I  C  D  E  K  K  K  D  E  </second_frame>
            <third_frame>   G  Q  *  K  M  F  R  S  L  I  V  F  L  L  I  V  C  *  K  R  L  M  G  V  C  V  L  G  H  F  L  G  C  S  V  M  G  R  R  W  I  C  A  N  C  S  W  L  *  G  R  R  V  G  T  K  G  F  V  Q  V  G  L  G  V  W  L  L  *  S  V  G  L  I  *  Q  L  V  R  L  *  S  W  C  M  L  S  T  W  M  H  *  T  E  Q  W  *  N  L  S  N  L  I  M  K  R  V  R  L  R  R  V  L  W  V  L  V  L  F  G  W  T  L  S  W  I  *  R  G  F  *  W  K  F  V  M  K  K  R  K  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86896" stop="87321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSVENVSKLDSVLVNRLLKEVNGCLCFRPFPRMLGDGKAVDLCELFLVVREKGGYERVCASRSWGVVAVECGFDLTTGSALKLVYVKYLDALNRAMVKLEQPDNEKSEVKKSALGFSAVRMDLELDLKGVLMEICDEKKKDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="90120" PGL_stop="91116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90120" e_stop="91116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="90120" e_stop="91116" e_length="997"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90120" stop="90866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90204" stop="90930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90205" stop="90667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90398" stop="91116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAACAGAAAATGCATCCATCTATGTATGATAATAATAGTGGGTCTGAGCAGCTAAGGTGCAGCCAAAGGGTCCAATCTGCAAAAGATTATTCGAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTCCAATCTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAACACGTCTAGATCCCATATAGTAACAAACAGGTGGATGGATGTTAACATCAATGGCTTTTGTTCAGAAATGTAAATTCGCGGAGTCTCTTGTTCTCTTTTACATCAGCAATATTTTTTGGGTCTGTGGATACAATGAGTTTGAGGGGAGTTTTACAGATATCAATTTTTGTTCTGCATTTCTCAATGTATACAGTTTATACTCCCTTTAGA</gDNA_template>
            <first_frame> Q  K  Q  K  M  H  P  S  M  Y  D  N  N  S  G  S  E  Q  L  R  C  S  Q  R  V  Q  S  A  K  D  Y  S  K  K  S  G  S  H  I  D  A  T  L  I  N  R  P  T  D  S  S  A  E  S  G  V  W  W  N  R  R  R  K  K  I  A  S  I  G  S  E  F  Q  A  D  I  P  E  C  N  K  D  I  Y  E  S  D  S  K  W  L  G  T  R  I  W  P  L  D  K  N  E  Q  R  R  I  L  I  E  R  D  P  A  G  K  G  R  D  D  T  C  G  C  E  Y  A  G  S  Y  D  C  I  R  F  H  L  S  E  K  R  K  K  L  E  V  E  L  G  S  A  F  Y  H  W  K  F  D  C  M  G  E  K  V  A  L  S  W  T  S  N  D  K  Q  K  F  H  D  I  A  K  S  I  P  L  S  E  D  E  S  F  S  Y  W  P  D  L  F  K  F  F  P  H  R  S  R  E  S  L  V  S  Y  Y  F  N  V  S  N  L  H  R  I  G  Q  Q  N  R  M  N  T  S  Y  V  D  S  D  D  D  E  S  G  C  G  P  R  S  I  S  F  G  R  D  P  K  S  S  I  S  C  S  T  K  K  T  R  L  D  P  I  *  *  Q  T  G  G  W  M  L  T  S  M  A  F  V  Q  K  C  K  F  A  E  S  L  V  L  F  Y  I  S  N  I  F  W  V  C  G  Y  N  E  F  E  G  S  F  T  D  I  N  F  C  S  A  F  L  N  V  Y  S  L  Y  S  L  *  </first_frame>
            <second_frame>  K  N  R  K  C  I  H  L  C  M  I  I  I  V  G  L  S  S  *  G  A  A  K  G  S  N  L  Q  K  I  I  R  K  N  Q  V  L  I  L  M  Q  L  *  *  T  D  L  P  T  L  L  Q  S  Q  E  F  G  G  T  V  G  V  R  K  *  H  Q  L  G  R  S  S  K  Q  I  F  L  S  V  I  R  T  S  M  N  L  T  L  N  G  W  A  P  E  S  G  H  W  I  K  M  N  S  A  E  Y  *  L  K  E  I  L  L  G  K  E  G  M  I  H  V  V  V  N  M  Q  V  L  M  T  A  L  G  F  T  Y  L  R  R  E  R  S  L  K  L  S  *  D  P  P  F  I  T  G  N  L  T  A  W  V  K  R  L  H  S  L  G  H  Q  T  T  N  R  N  S  M  I  *  Q  S  R  S  L  Y  L  R  M  K  V  S  V  T  G  L  T  F  L  S  S  S  L  T  E  A  E  N  L  W  *  A  T  I  S  M  S  P  I  Y  T  A  *  V  S  R  I  G  *  I  Q  V  T  L  T  V  M  M  M  N  Q  G  V  D  L  G  L  F  L  L  G  G  I  L  S  P  P  S  L  V  P  Q  R  K  H  V  *  I  P  Y  S  N  K  Q  V  D  G  C  *  H  Q  W  L  L  F  R  N  V  N  S  R  S  L  L  F  S  F  T  S  A  I  F  F  G  S  V  D  T  M  S  L  R  G  V  L  Q  I  S  I  F  V  L  H  F  S  M  Y  T  V  Y  T  P  F  R </second_frame>
            <third_frame>   K  T  E  N  A  S  I  Y  V  *  *  *  *  W  V  *  A  A  K  V  Q  P  K  G  P  I  C  K  R  L  F  E  K  I  R  F  S  Y  *  C  N  S  D  K  Q  T  Y  R  L  F  C  R  V  R  S  L  V  E  P  S  A  *  E  N  S  I  N  W  V  G  V  P  S  R  Y  S  *  V  *  *  G  H  L  *  I  *  L  *  M  V  G  H  P  N  L  A  T  G  *  K  *  T  A  Q  N  I  N  *  K  R  S  C  W  E  R  K  G  *  Y  M  W  L  *  I  C  R  F  L  *  L  H  *  V  S  P  I  *  E  E  K  E  A  *  S  *  A  R  I  R  L  L  S  L  E  I  *  L  H  G  *  K  G  C  T  L  L  D  I  K  R  Q  T  E  I  P  *  Y  S  K  V  D  P  F  I  *  G  *  K  F  Q  L  L  A  *  P  F  *  V  L  P  S  Q  K  Q  R  I  F  G  K  L  L  F  Q  C  L  Q  S  T  P  H  R  S  A  E  *  D  E  Y  K  L  R  *  Q  *  *  *  *  I  R  V  W  T  *  V  Y  F  F  W  A  G  S  *  V  L  H  L  L  F  H  K  E  N  T  S  R  S  H  I  V  T  N  R  W  M  D  V  N  I  N  G  F  C  S  E  M  *  I  R  G  V  S  C  S  L  L  H  Q  Q  Y  F  L  G  L  W  I  Q  *  V  *  G  E  F  Y  R  Y  Q  F  L  F  C  I  S  Q  C  I  Q  F  I  L  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90120" stop="90926"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKQKMHPSMYDNNSGSEQLRCSQRVQSAKDYSKKSGSHIDATLINRPTDSSAESGVWWNRRRKKIASIGSEFQADIPECNKDIYESDSKWLGTRIWPLDKNEQRRILIERDPAGKGRDDTCGCEYAGSYDCIRFHLSEKRKKLEVELGSAFYHWKFDCMGEKVALSWTSNDKQKFHDIAKSIPLSEDESFSYWPDLFKFFPHRSRESLVSYYFNVSNLHRIGQQNRMNTSYVDSDDDESGCGPRSISFGRDPKSSISCSTKKTRLDPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="93667" PGL_stop="96909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93667" e_stop="93810"/>
            <exon e_start="93937" e_stop="94016"/>
            <exon e_start="94600" e_stop="94714"/>
            <exon e_start="94807" e_stop="94859"/>
            <exon e_start="94974" e_stop="95095"/>
            <exon e_start="95152" e_stop="95158"/>
            <exon e_start="96604" e_stop="96909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.951"/>
          <exon-intron don_prob="0.997" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.541" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.494" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.976" e_score="0.857"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="93667" e_stop="93810" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93937" e_stop="94016" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.853">
            <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94600" e_stop="94714" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.541" acc_prob="0.859">
            <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94807" e_stop="94859" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.559" acc_prob="0.494">
            <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94974" e_stop="95095" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.967">
            <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56"/>
          </intron>
          <exon e_serial="6" e_score="0.857">
            <gDNA_exon_boundary e_start="95152" e_stop="95158" e_length="7"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445"/>
          </intron>
          <exon e_serial="7" e_score="0.980">
            <gDNA_exon_boundary e_start="96604" e_stop="96909" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93667" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93702" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93704" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93709" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93716" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93740" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264185" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93741" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93961" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261970" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94637" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260196" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94643" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233193" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94644" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94655" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254967" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94660" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94826" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240141" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTTCTTCCCCTCTCTCTCTTTGTCTGAACATTTTTAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT : AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA : GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT : GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG : ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA : GTTCAAG : AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCT</gDNA_template>
            <first_frame> F  L  L  P  L  S  L  F  V  *  T  F  L  V  L  Q  R  T  L  F  F  L  S  L  *  N  H  P  K  E  E  S  N  H  V  F  S  K  Q  T  P  *  N  G  P  Y  E  T  :  N  D  E  R  L  Q  G  G  D  D  *  *  W  H  A  R  V  L  C  A  F  S  W  T  C  *  K :   S  L  S  W  R  C  V  E  N  K  G  G  T  S  *  C  L  P  I  *  I  S  I  H  W  F  Y  *  *  N  L  P  P  K  C  *  *  D  :  V  W  L  S  L  F  R  C  Y  Q  S  D  L  E  S  H  V  * :   F  G  K  C  V  *  S  V  S  S  T  T  S  L  V  S  K  S  I  R  P  I  E  W  R  G  C  C  P  Y  D  A  R  P  G  C  L  *  T  K   : S  S  R :   I  L  S  E  I  C  Q  A  *  R  C  W  S  C  C  P  *  G  E  V  K  *  *  G  V  E  *  S  *  I  *  F  S  *  *  C  S  C  R  P  C  *  S  M  T  D  S  R  T  H  *  L  Y  V  S  V  N  D  V  L  S  P  V  *  Y  Q  A  E  L  Q  S  S  R  Q  C  S  P  C  F  I  S  L  A  S  M  *  I  I  S  P  F  N  Y  C  V  H  I  C  C  Y  L   </first_frame>
            <second_frame>  S  F  F  P  S  L  S  L  S  E  H  F  *  Y  Y  K  E  L  F  F  F  S  L  S  R  I  I  Q  K  K  K  A  T  M  S  S  P  S  K  R  R  E  M  D  L  M  K  L :   M  M  S  D  Y  K  V  E  M  I  N  D  G  M  Q  E  F  Y  V  H  F  H  G  P  A  E   : S  P  Y  H  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  I  N  K  I  Y  H  P  N  V  D  E  M :   S  G  S  V  C  L  D  V  I  N  Q  T  W  S  P  M  F   : D  L  V  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  E  A  A  A  L  M  M  R  D  R  A  A  Y  E  L  R  :  V  Q   : E  F  C  Q  K  Y  A  K  P  E  D  V  G  A  A  A  P  E  E  K  S  S  D  E  E  L  S  E  A  E  Y  D  S  A  D  D  A  V  A  G  P  V  D  P  *  P  T  P  A  L  I  D  F  M  Y  L  *  M  M  F  L  V  L  F  N  I  K  L  N  Y  K  V  Q  D  N  V  P  L  V  L  L  V  *  L  Q  C  K  *  F  H  P  L  I  T  V  F  I  F  A  V  I  C  </second_frame>
            <third_frame>   P  S  S  P  L  S  L  C  L  N  I  F  S  I  T  K  N  S  F  F  S  L  S  L  E  S  S  K  R  R  K  Q  P  C  L  L  Q  A  N  A  V  K  W  T  L  *  N   : *  *  *  A  I  T  R  W  R  *  L  M  M  A  C  K  S  F  M  C  I  F  M  D  L  L  K  :  V  L  I  M  A  V  C  G  K  *  G  W  N  F  L  M  L  T  H  I  N  L  H  P  L  V  L  L  I  K  S  T  T  Q  M  L  M  R   : C  L  A  Q  F  V  *  M  L  S  I  R  L  G  V  P  C  L  :  I  W  *  M  C  L  K  C  F  F  H  N  F  S  C  I  Q  I  H  Q  T  H  *  M  E  R  L  L  P  L  *  C  E  T  G  L  P  M  N  *  E :   F  K  :  N  F  V  R  N  M  P  S  L  K  M  L  E  L  L  P  L  R  R  S  Q  V  M  R  S  *  V  K  L  N  M  I  Q  L  M  M  Q  L  Q  A  L  L  I  H  D  R  L  P  H  S  L  T  L  C  I  C  K  *  C  S  *  S  C  L  I  S  S  *  T  T  K  F  K  T  M  F  P  L  F  Y  *  F  S  F  N  V  N  N  F  T  L  *  L  L  C  S  Y  L  L  L  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93707" stop="93810"/>
                    <exon start="93937" stop="94016"/>
                    <exon start="94600" stop="94714"/>
                    <exon start="94807" stop="94859"/>
                    <exon start="94974" stop="95095"/>
                    <exon start="95152" stop="95158"/>
                    <exon start="96604" stop="96737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYKELFFFSLSRIIQKKKATMSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPAESPYHGGVWKIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAAYELRVQEFCQKYAKPEDVGAAAPEEKSSDEELSEAEYDSADDAVAGPVDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93807" e_stop="94016"/>
            <exon e_start="94600" e_stop="94714"/>
            <exon e_start="94807" e_stop="94859"/>
            <exon e_start="94974" e_stop="95095"/>
            <exon e_start="95152" e_stop="95158"/>
            <exon e_start="96604" e_stop="96909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.853" e_score="0.990"/>
          <exon-intron don_prob="0.541" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.494" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.976" e_score="0.857"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="93807" e_stop="94016" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.853">
            <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94600" e_stop="94714" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.541" acc_prob="0.859">
            <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94807" e_stop="94859" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.559" acc_prob="0.494">
            <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94974" e_stop="95095" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.842" acc_prob="0.967">
            <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56"/>
          </intron>
          <exon e_serial="5" e_score="0.857">
            <gDNA_exon_boundary e_start="95152" e_stop="95158" e_length="7"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="96604" e_stop="96909" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93807" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93961" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261970" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94637" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260196" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94643" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233193" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94644" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94655" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254967" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94660" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94826" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240141" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA : GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT : GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG : ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA : GTTCAAG : AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCT</gDNA_template>
            <first_frame> N  C  E  S  L  I  I  L  V  K  N  L  I  F  F  C  S  C  *  V  *  V  S  F  L  F  D  F  F  I  S  F  D  S  I  Y  L  F  C  L  F  I  L  E  *  *  A  I  T  R  W  R  *  L  M  M  A  C  K  S  F  M  C  I  F  M  D  L  L  K  :  V  L  I  M  A  V  C  G  K  *  G  W  N  F  L  M  L  T  H  I  N  L  H  P  L  V  L  L  I  K  S  T  T  Q  M  L  M  R   : C  L  A  Q  F  V  *  M  L  S  I  R  L  G  V  P  C  L  :  I  W  *  M  C  L  K  C  F  F  H  N  F  S  C  I  Q  I  H  Q  T  H  *  M  E  R  L  L  P  L  *  C  E  T  G  L  P  M  N  *  E :   F  K  :  N  F  V  R  N  M  P  S  L  K  M  L  E  L  L  P  L  R  R  S  Q  V  M  R  S  *  V  K  L  N  M  I  Q  L  M  M  Q  L  Q  A  L  L  I  H  D  R  L  P  H  S  L  T  L  C  I  C  K  *  C  S  *  S  C  L  I  S  S  *  T  T  K  F  K  T  M  F  P  L  F  Y  *  F  S  F  N  V  N  N  F  T  L  *  L  L  C  S  Y  L  L  L  S  A </first_frame>
            <second_frame>  T  V  N  L  *  S  F  L  L  K  I  *  S  F  F  V  L  V  K  F  E  L  V  F  C  L  I  F  L  F  L  L  I  L  Y  I  C  F  V  C  L  Y  *  N  D  E  R  L  Q  G  G  D  D  *  *  W  H  A  R  V  L  C  A  F  S  W  T  C  *  K :   S  L  S  W  R  C  V  E  N  K  G  G  T  S  *  C  L  P  I  *  I  S  I  H  W  F  Y  *  *  N  L  P  P  K  C  *  *  D  :  V  W  L  S  L  F  R  C  Y  Q  S  D  L  E  S  H  V  * :   F  G  K  C  V  *  S  V  S  S  T  T  S  L  V  S  K  S  I  R  P  I  E  W  R  G  C  C  P  Y  D  A  R  P  G  C  L  *  T  K   : S  S  R :   I  L  S  E  I  C  Q  A  *  R  C  W  S  C  C  P  *  G  E  V  K  *  *  G  V  E  *  S  *  I  *  F  S  *  *  C  S  C  R  P  C  *  S  M  T  D  S  R  T  H  *  L  Y  V  S  V  N  D  V  L  S  P  V  *  Y  Q  A  E  L  Q  S  S  R  Q  C  S  P  C  F  I  S  L  A  S  M  *  I  I  S  P  F  N  Y  C  V  H  I  C  C  Y  L   </second_frame>
            <third_frame>   L  *  I  F  N  H  S  C  *  K  F  D  L  F  L  F  L  L  S  L  S  *  F  F  V  *  F  F  Y  F  F  *  F  Y  I  F  V  L  F  V  Y  I  R  M  M  S  D  Y  K  V  E  M  I  N  D  G  M  Q  E  F  Y  V  H  F  H  G  P  A  E   : S  P  Y  H  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  I  N  K  I  Y  H  P  N  V  D  E  M :   S  G  S  V  C  L  D  V  I  N  Q  T  W  S  P  M  F   : D  L  V  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  E  A  A  A  L  M  M  R  D  R  A  A  Y  E  L  R  :  V  Q   : E  F  C  Q  K  Y  A  K  P  E  D  V  G  A  A  A  P  E  E  K  S  S  D  E  E  L  S  E  A  E  Y  D  S  A  D  D  A  V  A  G  P  V  D  P  *  P  T  P  A  L  I  D  F  M  Y  L  *  M  M  F  L  V  L  F  N  I  K  L  N  Y  K  V  Q  D  N  V  P  L  V  L  L  V  *  L  Q  C  K  *  F  H  P  L  I  T  V  F  I  F  A  V  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93905" stop="94016"/>
                    <exon start="94600" stop="94714"/>
                    <exon start="94807" stop="94859"/>
                    <exon start="94974" stop="95095"/>
                    <exon start="95152" stop="95158"/>
                    <exon start="96604" stop="96737"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYIFVLFVYIRMMSDYKVEMINDGMQEFYVHFHGPAESPYHGGVWKIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAAYELRVQEFCQKYAKPEDVGAAAPEEKSSDEELSEAEYDSADDAVAGPVDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96525" e_stop="96532"/>
            <exon e_start="96604" e_stop="96887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.401" acc_prob="0.976" e_score="0.750"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="96525" e_stop="96532" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.401" acc_prob="0.976">
            <gDNA_intron_boundary i_start="96533" i_stop="96603" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="96604" e_stop="96887" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96525" stop="96532"/>
              <exon start="96604" stop="96887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATAG : AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTG</gDNA_template>
            <first_frame> F  N  R :   I  L  S  E  I  C  Q  A  *  R  C  W  S  C  C  P  *  G  E  V  K  *  *  G  V  E  *  S  *  I  *  F  S  *  *  C  S  C  R  P  C  *  S  M  T  D  S  R  T  H  *  L  Y  V  S  V  N  D  V  L  S  P  V  *  Y  Q  A  E  L  Q  S  S  R  Q  C  S  P  C  F  I  S  L  A  S  M  *  I  I  S  P  F  N  Y  C  </first_frame>
            <second_frame>  L  I   : E  F  C  Q  K  Y  A  K  P  E  D  V  G  A  A  A  P  E  E  K  S  S  D  E  E  L  S  E  A  E  Y  D  S  A  D  D  A  V  A  G  P  V  D  P  *  P  T  P  A  L  I  D  F  M  Y  L  *  M  M  F  L  V  L  F  N  I  K  L  N  Y  K  V  Q  D  N  V  P  L  V  L  L  V  *  L  Q  C  K  *  F  H  P  L  I  T  V </second_frame>
            <third_frame>   *  *  :  N  F  V  R  N  M  P  S  L  K  M  L  E  L  L  P  L  R  R  S  Q  V  M  R  S  *  V  K  L  N  M  I  Q  L  M  M  Q  L  Q  A  L  L  I  H  D  R  L  P  H  S  L  T  L  C  I  C  K  *  C  S  *  S  C  L  I  S  S  *  T  T  K  F  K  T  M  F  P  L  F  Y  *  F  S  F  N  V  N  N  F  T  L  *  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0034P21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="100187" PGL_stop="98531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100187" e_stop="100096"/>
            <exon e_start="99463" e_stop="99212"/>
            <exon e_start="98919" e_stop="98531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="100187" e_stop="100096" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="100095" i_stop="99464" i_length="632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99463" e_stop="99212" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="98919" e_stop="98531" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100187" stop="100096"/>
              <exon start="99463" stop="99212"/>
              <exon start="98919" stop="98709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99355" stop="99212"/>
              <exon start="98919" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99274" stop="99212"/>
              <exon start="98919" stop="98531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99216" stop="99212"/>
              <exon start="98919" stop="98531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCACAAGGGAAAGTTGGGATAATAAGCTCATGAATGCCAGCGGGACTTATAGTGGAGGGACTAAGATGTCTGAGGTCATTCAAAGAAAG : TGCAAAACTGTCGTTACCAAACTCCAAAAGAAAATAGAGAAGGGAGGTCATCAAATAATTCCGCTGCTACACGGTCTGTGGAAAAGAATTGGTAGTTCTGGTTGCATGGGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAG : GTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAAGAAAAGA</gDNA_template>
            <first_frame> N  P  Q  G  K  V  G  I  I  S  S  *  M  P  A  G  L  I  V  E  G  L  R  C  L  R  S  F  K  E  S :   A  K  L  S  L  P  N  S  K  R  K  *  R  R  E  V  I  K  *  F  R  C  Y  T  V  C  G  K  E  L  V  V  L  V  A  W  V  G  Q  R  I  V  R  L  V  Y  R  Q  L  I  Y  A  L  M  S  L  S  T  A  E  C  S  N  L  C  L  M  C  S  *  C  *  N  V  Q  Y  S  T  S  V  S  H  M  R :   *  D  L  K  Q  G  K  C  M  I  F  S  L  T  S  *  R  *  N  F  R  R  L  I  F  E  K  Q  G  I  P  F  L  L  L  D  Q  Q  L  L  L  H  P  R  L  H  G  *  C  L  *  V  K  T  R  D  T  N  *  *  M  K  W  N  P  T  L  A  H  C  *  S  R  R  H  V  E  H  S  M  P  V  K  M  P  R  L  R  V  I  W  L  K  E  K  Q  D  L  V  V  A  V  A  G  S  L  A  N  R  M  I  H  A  H  S  L  I  P  G  S  L  L  F  A  K  R  K  E  K  </first_frame>
            <second_frame>  T  H  K  G  K  L  G  *  *  A  H  E  C  Q  R  D  L  *  W  R  D  *  D  V  *  G  H  S  K  K   : V  Q  N  C  R  Y  Q  T  P  K  E  N  R  E  G  R  S  S  N  N  S  A  A  T  R  S  V  E  K  N  W  *  F  W  L  H  G  W  V  R  G  *  S  V  W  F  T  D  N  *  S  T  R  *  *  V  *  V  Q  R  S  A  R  I  C  V  *  C  A  A  D  V  K  T  C  S  T  V  L  R  F  L  T  *   : G  E  I  *  S  K  E  S  A  *  S  F  L  *  H  L  E  D  R  I  S  G  D  *  F  S  R  S  K  E  F  H  F  F  C  W  T  S  S  F  Y  Y  T  R  V  F  T  A  D  A  C  R  S  K  Q  E  T  Q  T  D  K  *  N  G  T  R  L  *  P  T  A  E  A  A  D  T  W  N  T  P  C  R  *  R  C  Q  G  *  E  S  Y  G  S  K  R  N  K  I  W  W  *  Q  *  P  G  A  *  P  T  G  *  F  T  P  I  H  S  S  R  G  A  C  Y  L  Q  K  E  K  K  R </second_frame>
            <third_frame>   P  T  R  E  S  W  D  N  K  L  M  N  A  S  G  T  Y  S  G  G  T  K  M  S  E  V  I  Q  R  K  :  C  K  T  V  V  T  K  L  Q  K  K  I  E  K  G  G  H  Q  I  I  P  L  L  H  G  L  W  K  R  I  G  S  S  G  C  M  G  G  S  E  D  S  P  F  G  L  Q  T  I  D  L  R  V  D  E  S  E  Y  S  G  V  L  E  F  V  S  D  V  Q  L  M  L  K  R  A  V  Q  Y  F  G  F  S  H  E  :  V  R  S  E  A  R  K  V  H  D  L  F  F  D  I  L  K  I  E  F  P  E  T  D  F  R  E  A  R  N  S  I  S  F  A  G  P  A  A  S  T  T  P  A  S  S  R  L  M  P  V  G  Q  N  K  R  H  K  L  I  N  E  M  E  P  D  S  S  P  L  L  K  P  Q  T  R  G  T  L  H  A  G  E  D  A  K  A  K  S  H  M  A  Q  R  E  T  R  F  G  G  S  S  S  R  E  L  S  Q  Q  D  D  S  R  P  F  T  H  P  G  E  L  V  I  C  K  K  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100185" stop="100096"/>
                    <exon start="99463" stop="99212"/>
                    <exon start="98919" stop="98533"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTRESWDNKLMNASGTYSGGTKMSEVIQRKCKTVVTKLQKKIEKGGHQIIPLLHGLWKRIGSSGCMGGSEDSPFGLQTIDLRVDESEYSGVLEFVSDVQLMLKRAVQYFGFSHEVRSEARKVHDLFFDILKIEFPETDFREARNSISFAGPAASTTPASSRLMPVGQNKRHKLINEMEPDSSPLLKPQTRGTLHAGEDAKAKSHMAQRETRFGGSSSRELSQQDDSRPFTHPGELVICKKKRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="101203" PGL_stop="100570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101203" e_stop="100727"/>
            <exon e_start="100635" e_stop="100570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="101203" e_stop="100727" e_length="477"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100726" i_stop="100636" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100635" e_stop="100570" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101203" stop="101006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101202" stop="100727"/>
              <exon start="100635" stop="100570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAGAATGTCTTATTCAGTAGTGGTGTTGGTGTGGACTCCAGTGGATTAGCTCCTGAATCTGAGAAGAAAAGGGGGCGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGCCCATGAAGATGGTGAAATTGGGGAATTCGAAGATGATGAATTTAGTGGTGCAGTTGGTGTTACACCAGTTAACAAAGACCAGTCAGAAGAAGATGGTCCCAGTTTTGCTGATAGATATGAATACCACCAAGGTCCACAAGGTGCTATAAAGACTCGTGTACCCGATCAATTAGGTTCATCAGGATCATCTTCAGACAACCAAAGGCCGACACAGATAGTATCATCGTCTGTTTCATCTCAGCAGAAATTTGGATCTCTTTCTGCATTGGATGCCAGACCCAGTTCTCGGGCCAAAAGGATG : GCAGATGAATTAGAGGAAGGAGAAATTGCAGTATCTGGAGACTCACATGTGGATCTCCAGCAATCT</gDNA_template>
            <first_frame> S  K  N  V  L  F  S  S  G  V  G  V  D  S  S  G  L  A  P  E  S  E  K  K  R  G  R  P  K  G  K  K  V  P  I  Y  T  E  L  D  D  D  N  G  E  F  S  E  A  S  S  G  E  R  N  G  Y  S  A  H  E  D  G  E  I  G  E  F  E  D  D  E  F  S  G  A  V  G  V  T  P  V  N  K  D  Q  S  E  E  D  G  P  S  F  A  D  R  Y  E  Y  H  Q  G  P  Q  G  A  I  K  T  R  V  P  D  Q  L  G  S  S  G  S  S  S  D  N  Q  R  P  T  Q  I  V  S  S  S  V  S  S  Q  Q  K  F  G  S  L  S  A  L  D  A  R  P  S  S  R  A  K  R  M  :  A  D  E  L  E  E  G  E  I  A  V  S  G  D  S  H  V  D  L  Q  Q  S </first_frame>
            <second_frame>  Q  R  M  S  Y  S  V  V  V  L  V  W  T  P  V  D  *  L  L  N  L  R  R  K  G  G  G  L  K  V  R  R  F  L  F  T  Q  N  W  M  M  T  T  V  S  S  L  K  Q  V  L  G  R  G  M  D  I  Q  P  M  K  M  V  K  L  G  N  S  K  M  M  N  L  V  V  Q  L  V  L  H  Q  L  T  K  T  S  Q  K  K  M  V  P  V  L  L  I  D  M  N  T  T  K  V  H  K  V  L  *  R  L  V  Y  P  I  N  *  V  H  Q  D  H  L  Q  T  T  K  G  R  H  R  *  Y  H  R  L  F  H  L  S  R  N  L  D  L  F  L  H  W  M  P  D  P  V  L  G  P  K  G  W :   Q  M  N  *  R  K  E  K  L  Q  Y  L  E  T  H  M  W  I  S  S  N   </second_frame>
            <third_frame>   K  E  C  L  I  Q  *  W  C  W  C  G  L  Q  W  I  S  S  *  I  *  E  E  K  G  A  A  *  R  *  E  G  S  Y  L  H  R  I  G  *  *  Q  R  *  V  L  *  S  K  F  W  G  E  E  W  I  F  S  P  *  R  W  *  N  W  G  I  R  R  *  *  I  *  W  C  S  W  C  Y  T  S  *  Q  R  P  V  R  R  R  W  S  Q  F  C  *  *  I  *  I  P  P  R  S  T  R  C  Y  K  D  S  C  T  R  S  I  R  F  I  R  I  I  F  R  Q  P  K  A  D  T  D  S  I  I  V  C  F  I  S  A  E  I  W  I  S  F  C  I  G  C  Q  T  Q  F  S  G  Q  K  D   : G  R  *  I  R  G  R  R  N  C  S  I  W  R  L  T  C  G  S  P  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101203" stop="100727"/>
                    <exon start="100635" stop="100570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNVLFSSGVGVDSSGLAPESEKKRGRPKGKKVPIYTELDDDNGEFSEASSGERNGYSAHEDGEIGEFEDDEFSGAVGVTPVNKDQSEEDGPSFADRYEYHQGPQGAIKTRVPDQLGSSGSSSDNQRPTQIVSSSVSSQQKFGSLSALDARPSSRAKRMADELEEGEIAVSGDSHVDLQQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 97 chains have been computed
$ 
$ memory statistics:
$ 127024 bytes spliced alignments in total
$ 60 spliced alignments have been stored
$ 2117 bytes was the average size of a spliced alignment
$ 24936 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1558 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 116 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:26:40
-->
