<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:55:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601765" ref_strand="+" ref_description="SGN-U601765 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345906|emb|CAO15421.1| (e_value=3e-103) unnamed; (*ATH) AT2G02220.1 (e_value=8e-90) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:584097-587123 REVERSE | Aliases: T16F16.1; (*SWP) sp|Q8LPB4|PSKR_DAUCA (e_value=4e-94) Phytosulfokine receptor OS=Daucus carota GN=PSKR; ">
      <seq>agttgtacgggcaagcactcgaaaagtagttgatcaggaaaaggagctggatgcttctaacagggaactggaggacttgggctcaagtctggtcatatttttccataacaaggagaacactaaagagatgtgtcttgatgaccttttgaaatgtactgacaactttgatcaatcaaatattgttggatgtggaggcttcggcttggtctacaaggccatccttcgtgatggtaggaaagttgccatcaagcggctttcaggtgactacgggcaaatggagcgagaattccaagccgaagttgaatcactttcaagagctcagcatccgaatctggttcatcttcaaggatattgcaagtacagaactgaccggcttctaatttattcctacatggagaatggaagtttggattattggctgcacgagaaagttgacggacctgctttattggactgggatctgaggcttcaaattgctcaaggggctgcaagaggactagcgtacttgcacctagcgtgcgagcctcatatcttgcaccgagatataaagtctagtaacattcttcttgacgaaaatttcgaagctcacttagctgatttcggtcttgcaaggantattcggccctacgacactcatgtgaccactgatgttgtcggaacattnngctatatacctcctgaatatggccaagcctccgtagctacctatnaaggggangtttatagctttggtgnnnncttttggancttctaannngcaaana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="1" stop="1202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169" g_stop="933" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U601765" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169" e_stop="933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTACGGGCAAGCAGTCGAAAAGTAGTTGATCAGGAAAAGGAGCTGGATGCTTCTAACAGGGAACTGGAGGACTTGGGCTCAAGTCTGGTCATATTTTTCCATAACAAGGAGAACACTAAAGAGATGTGTCTTGATGACCTTTTGAAATGTACTGACAACTTTGATCAATCAAATATTGTTGGATGTGGAGGCTTCGGCTTGGTCTACAAGGCCATCCTTCGTGATGGTAGGAAAGTTGCCATCAAGCGGCTTTCAGGTGACTACGGGCAAATGGAGCGAGAATTCCAAGCCGAAGTTGAATCACTTTCAAGAGCTCAGCATCCGAATCTGGTTCATCTTCAAGGATATTGCAAGTACAGAACTGACCGGCTTCTAATTTATTCCTACATGGAGAATGGAAGTTTGGATTATTGGCTGCACGAGAAAGTTGACGGACCTGCTTTATTGGACTGGGATCTGAGGCTTCAAATTGCTCAAGGGGCTGCAAGAGGACTAGCGTACTTGCACCTAGCGTGCGAGCCTCATATCTTGCACCGAGATATAAAGTCTAGTAACATTCTTCTTGACGAAAATTTCGAAGCTCACTTAGCTGATTTCGGTCTTGCAAGGATTATTCGGCCCTACGACACTCATGTGACCACTGATGTTGTCGGAACATTAGGCTATATACCTCCTGAATATGGCCAAGCCTCCGTAGCTACCTATAAAGGGGACGTTTATAGCTTTGGTGTGGTTCTTTTGGAGCTTCTAACATGCAAAAG</genome_strand>
        <mrna_strand>AGTTGTACGGGCAAGCACTCGAAAAGTAGTTGATCAGGAAAAGGAGCTGGATGCTTCTAACAGGGAACTGGAGGACTTGGGCTCAAGTCTGGTCATATTTTTCCATAACAAGGAGAACACTAAAGAGATGTGTCTTGATGACCTTTTGAAATGTACTGACAACTTTGATCAATCAAATATTGTTGGATGTGGAGGCTTCGGCTTGGTCTACAAGGCCATCCTTCGTGATGGTAGGAAAGTTGCCATCAAGCGGCTTTCAGGTGACTACGGGCAAATGGAGCGAGAATTCCAAGCCGAAGTTGAATCACTTTCAAGAGCTCAGCATCCGAATCTGGTTCATCTTCAAGGATATTGCAAGTACAGAACTGACCGGCTTCTAATTTATTCCTACATGGAGAATGGAAGTTTGGATTATTGGCTGCACGAGAAAGTTGACGGACCTGCTTTATTGGACTGGGATCTGAGGCTTCAAATTGCTCAAGGGGCTGCAAGAGGACTAGCGTACTTGCACCTAGCGTGCGAGCCTCATATCTTGCACCGAGATATAAAGTCTAGTAACATTCTTCTTGACGAAAATTTCGAAGCTCACTTAGCTGATTTCGGTCTTGCAAGGANTATTCGGCCCTACGACACTCATGTGACCACTGATGTTGTCGGAACATTNNGCTATATACCTCCTGAATATGGCCAAGCCTCCGTAGCTACCTATNAAGGGGANGTTTATAGCTTTGGTG-NNNNCTTTTGGANCTTCTAANNNGCAAANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574824" ref_strand="+" ref_description="SGN-U574824 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147777298|emb|CAN66800.1| (e_value=1e-99) hypothetical; (*ATH) AT3G11920.1 (e_value=9e-94) | Symbol: None | glutaredoxin-related, contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase) | chr3:3772317-3774893 FORWARD | Aliases: F26K24.21; ">
      <seq>ggtttgatctctctggaatgaaagtgattgtgaacttaaaacctccggtgaagaagcttcccggaagagtgagtttcttctcgagatctaattgcagggattgcaccgctgtgaggtcgtttctgcacaaggaaaacctaaactacgttgaaattaacgtcgatgtgtatcctaaaagagagaaggaactaattgagaggaccggaagtgctaatgtgccgcagatatttctgaatgataagttgttaggtggactggtggcgttgaactcgctacggaatagcgggatgttggagaagaaatttgcagaaatgttggccggaaaatgcccggaggatgcaccggcaccaccggtttacggtttcgacgacgattacgaggagcaaaacgacgaaatggtagatattgtaagagtattgaggcaaaagcttccgatacaggacagaatcatgaggatgaaaatagtaaaaaattgcttctccggcggtgagcttgtggaggttctgatccaccacttggactgcggcaggaaaaaggctgtggaaattgggaagaacctggcgagaaggcattttattcaccaagtctttggagaaaatgaatttgaagatggaaaacacttctatagattccttgaacatgagccttttgttcccaaatgctataattttcgaggatccacaaatgacaatgaacccaaggacgttgctgtgttaggtcaaaagcttggtaaaataatgtctgcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="13813" stop="8313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13514" g_stop="12979" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12978" i_stop="8912" i_length="4067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8911" g_stop="8856" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="592" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8855" i_stop="8771" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8770" g_stop="8613" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="750" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U574824" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13514" e_stop="12979"/>
          <exon e_start="8911" e_stop="8856"/>
          <exon e_start="8770" e_stop="8613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGATCTCTCTGGAATGAAAGTGATTGTGAACTTAAAACCTCCGGTGAAGAAGCTTCCCGGAAGAGTGAGTTTCTTCTCGAGATCTAATTGCAGGGATTGCACCGCTGTGAGGTCGTTTCTGCACAAGGAAAACCTAAACTACGTTGAAATTAACGTCGATGTGTATCCTAAAAGAGAGAAGGAACTAATTGAGAGGACCGGAAGTGCTAATGTGCCGCAGATATTTCTGAATGATAAGTTGTTAGGTGGACTGGTGGCGTTGAACTCGCTACGGAATAGCGGGATGTTGGAGAAGAAATTTGCAGAAATGTTGGCCGGAAAATGCCCGGAGGATGCACCGGCACCACCGGTTTACGGTTTCGACGACGATTACGAGGAGCAAAACGACGAAATGGTAGATATTGTAAGAGTATTGAGGCAAAAGCTTCCGATACAGGACAGAATCATGAGGATGAAAATAGTAAAAAATTGCTTCTCCGGCGGTGAGCTTGTGGAGGTTCTGATCCACCACTTGGACTGCGGCAGGAAAAAGGTATGCATCTCGCTTCTTTCACATTATTACTAAATTATATTATAGAGTATTAATTCAATATTGCAATAATCAAATTTAGATATTTAATTTTCTATGAAATTATAATATATGATAAAAATATAAATGTTCGTTATTCAAAATGAAACTATAGGCACCTAACGTTCACAATAAATTGCATTATTATCTACTAATCCTAATAGGAGACGCAAGCACGAAAATGAACGCTAACATTTTTAGTATAGAATTGACGTTTGATCAGATTCTACAGTGTTTTAGGATTTTGAGGTATTAATGGAACGTGTAAAGGTATTAATGGAAATTTATATCCACTTTATTATAGTATATTATAAGTACTATATTTTTAAAAGTATTGTTCACTTAGCCCAAAAAGAATAATAAGATGGTACGGTGTGCAAGGGTCAACTAAGCTAATTTCTTATGTTTAAGTACAAATAATTTGGTTTTCGATATAAAATTTTGAATGTTTGGTAACACGTACGCACAAATTAAAATAATTTTGTAACAACAAATTATTTTAGGCAAAGAAAAATAGTTTGACCTTTTAAATGCATGTAGTTGTGCAGTGGTGCCAAACAATGTTCGACATAGAAATATTTGGGACAAGATATTCCTTACTTACAAAATGTAAGTTCCGTATCATACATATTGTCCAATAAATGTGAGACCGATTATAATTTACTGCATAAACAGAAGTATACTCCTGATAACTTACTAATAGGAGAATATATACGTCAATGGTTAGAGTATAGAGTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGATCAAACTAACTTAAAAGCTGGTTTTTGACTTATTTAACTGTTTGACAATACTCAAAATAACTTATTTTAAGTTAAACAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTTTTAACTTATAAGTTGTTTTAAGTTGACCATATTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAGTTACCCATATAACTCTAACATCTCTTTCTTCTATTTTTCTCTTTTCACGTTTTGCATAACAACTTCAGCACTTTTATCCAAACGCATAACTGTTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAATCCCATCCAAACGGGCCCTTAGTAGATAGTTTTACGGTATGATTTTTCTTATTAGTGGTATTGGTATTTTCTCACTCTCACTTTATTATTATTTCTTATTATTTTTTCTTTGATGATCATATTATTTGTTGGTGTTACTTGAAATTCTATCCTCTTTATTTTGTTATGATTTATTTTAAGCTAAGTGTCTATCGAAAAGGAAAGGTCTATTAAATGGTACGATTTAGTTATTCAATTTGGTAGGAATACTTCTAAGTTTTGAAAATTAGATAGAAATGACAAATAGTATAAGTTAGGTTAAAAGATATTTTTCTCAATATTTCCAAACTTTTAACTTTTACACTTTAGTCCAACAACGTAGTTGTCCGAGAACTTCAATAGTTGTCCAGACAATTTGGACAACTACGAAAAGCTATTTTGGACAACTACGAAAAGATATTTTTACTCCTTCTACTAATATTAAAAATAACAAAAATAAATAAATCAAGAAGACCCACTTGTCCTATTTTTTTAATTGAAAACTTCCGAGACATTTTAAGCTTATTTGTAGTAAAAGTAAGATTGCGCATAAACAACTATCTTTTAACTCTTTATTTATGGAGTTTTGCAAATAGTCAATTTGATTTTGAACCCTCTCAACTAGTTCAAATTCACGTTATGAAATCCTACTTTAAAACAGTCTTTATTAAAGATGATTTCATTTTTGAGGTCCAAATTAAAGATGTCTTTTACCCACCACAATTGTTGGTGATTTTTGAAATTAAGTCATACTATGTACTAGTAGCATGAAATGGGTTTAAACTTTTAAAGTAGATAGGCCATTGTTCAGGCTTTGGTCACAGTCAAATGAATAAAGTCAAGTAGTTTCTACCCGAACCACACGTCTATCTTGGGCTCACTTAGAACTCAGAAAAGTTCCTCTATCCAACGGTCCCGTCAATCTCGTGCGCTGATAATGAGTATATTACCCACAGTCCCACACGCTTTTGAAATTAGTGCAATCAATTAACTTGGAGATTATTAATGAAGTCATTATATTTCTTGGGTCAATTTGATAAGTTATTTGGAAATTGTACACTTTAAATATTAGCCTTAGCCTCGTCATTATGATAGATGCGTGAATTGGTCTTTTCTCCCACGTGCTGAAAGTTAGTCACTGTTTCATTTCTTCATAAAAATAAAATACCCCCTTGGATTATTTGATCTTTTGATAGGAACATTGGATCTTGTATTCATTTTTCTCTTTATAATAATTGCAAAGGTGAGGAAATGATGAGAAGGGTTAAAAGAAAATCAACGTGAAACAAATAGGAGAGTTTTTTTTCCCGGAGTCATTTGGATATAGTGTATAAAAATAATATTAAATAAAGCATGTTATTAGGGTTATATTAGTTATGCTTGCATTAGTTATACAATAAAAAATATTTCTTATGCATAGTTTGATTTGATGTATTAAAAAAAAATATATTGTATAAAAATATTTATTACAAAAGTATCCTCTAAAATTATGATTGAGAAAAAGTAAAAATACTTTTGAGGGGTAATTGAGTCTTTTAGCTAATGCATATATTAAATTCTTTTACATTACTAATATCTAAAATCGATGATATTAGTATTTAGCAATACACTCCTCAATACATATAACATGAAAAAATGTATCGCATTAGATCATATTAATAAACAAAGCTGATGTAAATATTATGTTATTAATACATTCTACCGAAGGCCTATTAAGATACTTCTCGTTTGCTACTATAAGCTCTATTATTCAAATCCAATCCATTCACTGGGGTCCGAGGGATAACGTTTTTCGTCCTTTCCTTTTCTTTCCTTTTTCCCATGAAAAAGCGACAGGCTTTTACGTACCAAAAAAGAAAAAAGTGACAAAGCTTCCTTTTTTTTTCTTCTCTTGTTTCCAAACACATGACTAGTTTTCATAAAACAAAAGAGTTTAAAAACATGTGTTACTTTCAAGAATGAATATTTTTTGGAGGATCAAGTAGTCTGTCCTAACGGCTATACCAATGAAGATAGAATAGATCATATGAGAAATGGAGCTCAAATTCTAATAGATAAAAAAATGCTAGGTTGTTCTTCCCATTATTTTTAGCGGGGCGGTAGCATGTACATTCTTTTGATTACCCTAAAGCCCAAGGTCAATGAACATGGAAGGAAATATGGTTTAGTGGAGGTGCGCGCAATGGTTATTGTAAAAATGAACTAGACATTTTTCTTATGGCATTTCTTTGTTCTCATTTATTTTTTGCTTCAAATACAATCTTTCTTCCATGATCTCCATAAAGGAACTTTCAGGATATTATTTCAGTTGATGTGCGCGCAAGTTAGTTACTATCATTTATTAAAAAGGAATGAATTTTTTCTCATGACATTTATTGTACCATTACTGCTTCAAGGTCAATTGTCCCTCTATATATGATCTTCAGTAGAGTAACTTTCTTGTGGATACATTGGATTGGCCTGAATTTCTGATTGTTAGCGGATCTAATTCTGGAGTTTTAGCATCTGTGTAGCATGGCCTTGAATCCAGTCTGCATGAGTTACTCATTACCTGTAGTTTGTTGAAAAAAGAAAAAAAAAAGGGTAACACAATCTTTTGGTATTTCTCAAACTTTATTTTCTAACTAAACATAAAAGTTATTTCAGATTCAATCATAGCATAGTGCTTAAGTAAGTATAGCAAAGTGGAAACTTGGAAGTATAATGCAAAAATGAATTCTAAAAGCTTATAACATTAGATACTGAGACGTGTCCATGCAACACTACCGTTGTTTTGCAATGACCTCATTAATTAGCAAAGCCATTGATTTTTAAGAATCATTAAAAATTTTATCAATGATACTGCATGGACTTATATTTCAAAGTAATACCTATTTGATATCTAACACAGGCTGTGGAAATTGGGAAGAACCTGGCGAGAAGGCATTTTATTCACCAAGTCTTTGGGTAAGAACCCGAAAAGCATTTTATGACTGCTGCCCATCAGTGTAGATTTTATTCTATTGACAAATTACTCTACTGTTTATGCCAGAGAAAATGAATTTGAAGATGGAAAACACTTCTATAGATTCCTTGAACATGAGCCTTTTGTTCCCAAATGCTATAATTTTCGAGGATCCACAAATGACAATGAACCCAAGGACGTTGCTGTGTTAGGTCAAAGGCTTGGTAAAATAATGTCTGCATTAC</genome_strand>
        <mrna_strand>GGTTTGATCTCTCTGGAATGAAAGTGATTGTGAACTTAAAACCTCCGGTGAAGAAGCTTCCCGGAAGAGTGAGTTTCTTCTCGAGATCTAATTGCAGGGATTGCACCGCTGTGAGGTCGTTTCTGCACAAGGAAAACCTAAACTACGTTGAAATTAACGTCGATGTGTATCCTAAAAGAGAGAAGGAACTAATTGAGAGGACCGGAAGTGCTAATGTGCCGCAGATATTTCTGAATGATAAGTTGTTAGGTGGACTGGTGGCGTTGAACTCGCTACGGAATAGCGGGATGTTGGAGAAGAAATTTGCAGAAATGTTGGCCGGAAAATGCCCGGAGGATGCACCGGCACCACCGGTTTACGGTTTCGACGACGATTACGAGGAGCAAAACGACGAAATGGTAGATATTGTAAGAGTATTGAGGCAAAAGCTTCCGATACAGGACAGAATCATGAGGATGAAAATAGTAAAAAATTGCTTCTCCGGCGGTGAGCTTGTGGAGGTTCTGATCCACCACTTGGACTGCGGCAGGAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAAATTGGGAAGAACCTGGCGAGAAGGCATTTTATTCACCAAGTCTTTGG.....................................................................................AGAAAATGAATTTGAAGATGGAAAACACTTCTATAGATTCCTTGAACATGAGCCTTTTGTTCCCAAATGCTATAATTTTCGAGGATCCACAAATGACAATGAACCCAAGGACGTTGCTGTGTTAGGTCAAAAGCTTGGTAAAATAATGTCTGCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598665" ref_strand="+" ref_description="SGN-U598665 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351555|emb|CAO41780.1| (e_value=3e-67) unnamed; (*ATH) AT1G79000.1 (e_value=5e-64)  Symbol: None | p300/CBP acetyltransferase-related protein 2 (PCAT2), contains Pfam domains PF02135: TAZ zinc finger and PF00569: Zinc finger, ZZ type; identical to cDNA p300/CBP acetyltransferase-related protein 2 GI:12597460 | chr1:29721243-2972885... ; (*SWP) sp|Q6YXY2|HACL1_ORYSJ (e_value=5e-65) Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica GN=Os02g0137500; ">
      <seq>aggagactgaagaatgggtaatgtcttaccttttggaatttacttcagaagatatcagttttgaagaaacaaattgaaaatttctgctctacacttttttttcagctgctcacaatgttctcttcattgttctgaaattttaaatagtttttgtcttgtcaaattaaaaattactgttttgtgcagtgggttcaatgtgataagtgtgaagcttggcaacatcagatttgtgcattgttcaatggtaggaggaatgatggtgggcaagccgagtatacctgtcccaattgctatattatagaggttgaaagaggtgagcgtaagcccttaccacagagtgctgttcttggagccaaagatctgcctcgcacatgtctcagtgatcatattgaggttcgattagatagggttttgaaggatgatagacaaaaaaagagcagaacgtgaaggaaaaagttatgatgaggttcccggtgctgaagggcttgttgtaagagttgtgtcatcagtagacaaaaagttagaagtgaaatcaaggtttcttgaggtctttcaagaagagaactatccgctggagttcccatataaatcaaaggtgttattgttatttcagaaaattgagggtgtagaagtgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="32854" stop="35971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33154" g_stop="33618" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33619" i_stop="34293" i_length="675">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34294" g_stop="34422" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34423" i_stop="35629" i_length="1207">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35630" g_stop="35671" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="637" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U598665" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33154" e_stop="33618"/>
          <exon e_start="34294" e_stop="34422"/>
          <exon e_start="35630" e_stop="35671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGACTGAAGAATGGGTAATGTCTTACCTTTTGGAATTTACTTCAGAAGATATCAGTTTTGAAGAAACAAATTGAAAATTTCTGCTCTACACTTTTTTTTCAGCTGCTCACAATGTTCTCTTCATTGTTCTGAAATTTTAAATAGTTTTTGTCTTGTCAAATTAAAAATTACTGTTTTGTGCAGTGGGTTCAATGTGATAAGTGTGAAGCTTGGCAACATCAGATTTGTGCATTGTTCAATGGTAGGAGGAATGATGGTGGGCAAGCCGAGTATACCTGTCCCAATTGCTATATTATAGAGGTTGAAAGAGGTGAGCGTAAGCCCTTACCACAGAGTGCTGTTCTTGGAGCCAAAGATCTGCCTCGCACATGTCTCAGTGATCATATTGAGGTTCGATTAGATAGGGTTTTGAAGGATGATAGAC-AAAAAAGAGCAGAACGTGAAGGAAAAAGTTATGATGAGGTAAGTGAATTGTCTTGCGTTTTGATCACTACAGCCATCATGTTAAAGTTTCGTTGTTTAACATAAGAGAATGATACATAAATGGGATATAGTTTTGATTGATAGTCATCATCAAGGCAGTCCCCTCCCCAATACAATAGATTCTAAAACAGCTCTATGTCATGCTATGATAAATATTGGCATTCTAAACATCATAAAACTCACACTGGTCTTTATGGTGGATGCTGCATTCACTTCTTTGACCAGAATAGTTGCTTATGCTCAAGTCCAGACCGTGGAACAGCTTCAGCCTTCTAAAGAAAAGTGACATAAATAATATATCTGCTCTTCCTTTTTCAGAAAAAAAGAGTAAAATATCTTGTCCTCACATTTTGCAGTTTTATGTTTTCCTTTGGAGAGTTGGATAACCTCATGTAACATTCATTTTAGAGAATATTAAGAACTGTGTCAAATATTAGCTTTCATTCATATCCTGGGTAGGGATATAAATTAGCTTGTGGATTGCACCGTCTCAATTGCTTAACAATTTTCCTAATAAATATAGAAATTTGTTTCCTCTTGGAAAAGATGTCTTGTTCGGGTGTTTCTTCCAAGTTCTGTTTATTGATATGTTAGTCAGCAATGGTTCACTTATGTATGTTTAGTTAACCTTCTGCATATGTTTTTTATTTCCAGGTTCCCGGTGCTGAAGGGCTTGTTGTAAGAGTTGTGTCATCAGTAGACAAAAAGTTAGAAGTGAAATCAAGGTTTCTTGAGGTCTTTCAAGAAGAGAACTATCCGCTGGAGTTCCCATATAAATCAAAGGTACACTTTGACCCTTCTTTTGATTACTACAAAATAGAGTTGTTTGGTTGTGAAAACAGAATTAAACAAAGATTGAAGTTTTGGATGTCTTTGTTGTGAAACAAACCAAAGCAAGCCGAACTTGTCTCTACGATAGCCACATTCTTTTAGATTATACTTTGAGATCCTTTTTCGTGAGTTTGTTTTTCCAACTTCATATTTCTCAATCATATGACTCTGTTATGATATTATAGAATTAATTTAATCTTATTTTATTTTCTTCAAAATTTAATTATCATTCACTATGTTCTATAATGTACATTTTCTTATATTTACATAGAAATAATAAATGCTTTTGTATTAAATGAATGCATGTTTTCAAGGATATTAGTATAACATTCAGATACGATAAGTGGTTTGGTTGAAGTTTATATAGTAGTTGGGTATACTGCTAGTTTACTTCTGGTTTAAGGAGTTCAGGAAACATCTTACCTAACACAATTGTCTTCCAATAACAGTCATCAAAACAGATCTTTTTTGCACTAAATTTTTTTAAGAAACTTTTGTAATTAGTTTCTCTGAAATGCTATTCAGTCGTCACATAATTGTTGTTGATATTTTGGGTGCAATGATTGAGTGAAACTGAAATGTGTTAATACCGTATATTCTTACGTTTAAAGTAGATCAGATTATTGGTTTGTGAGACATTGTTTTTGATAAATCATTGGTTTGAGAGACATCACTGTAACGTCACTAACATGCGCCTCATTATGTGTTCCTGATGTGCATTTGATAAGAGCCTTATACAGGTAAAATTATTTGGTTCCCTCCATATCTGTTCATTTTTCCTTGACCTGAATATTGCCTCAGCACCCTTGAACTTTGTAATAGCTCCACCTCTGTCATGAAGAGATTATTTGGGGGAAGCCTATACATTAGTGAAATAATTAAATAATTGGATTGGGAGCTTGATTTTGGTATGGTTGTCTTGGGAATAAATTGGTGGACTAATTCTTTTCATTATTCTTTGGTACATGTAACAAATCGATTGGTCAGCTAGTTGAGATCGGCTAGATAAATTCTGTGCAACTGTTACACTCTATTATATTGTCTTCGGTTCTAGGTCAAGTATTTGGTCATAAGATCTCTGTCTGTCATTTCTTAGCTCATTTCTCTTGCAATTAGGTGATCAGGATTTGAGTGCTGACTATTAAGTTGCATCCTTCAGGTGTTATTGTTATTTCAGAAAATTGAGGGTGTAGAAGTGTGC</genome_strand>
        <mrna_strand>AGGAGACTGAAGAATGGGTAATGTCTTACCTTTTGGAATTTACTTCAGAAGATATCAGTTTTGAAGAAACAAATTGAAAATTTCTGCTCTACACTTTTTTTTCAGCTGCTCACAATGTTCTCTTCATTGTTCTGAAATTTTAAATAGTTTTTGTCTTGTCAAATTAAAAATTACTGTTTTGTGCAGTGGGTTCAATGTGATAAGTGTGAAGCTTGGCAACATCAGATTTGTGCATTGTTCAATGGTAGGAGGAATGATGGTGGGCAAGCCGAGTATACCTGTCCCAATTGCTATATTATAGAGGTTGAAAGAGGTGAGCGTAAGCCCTTACCACAGAGTGCTGTTCTTGGAGCCAAAGATCTGCCTCGCACATGTCTCAGTGATCATATTGAGGTTCGATTAGATAGGGTTTTGAAGGATGATAGACAAAAAAAGAGCAGAACGTGAAGGAAAAAGTTATGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGTGCTGAAGGGCTTGTTGTAAGAGTTGTGTCATCAGTAGACAAAAAGTTAGAAGTGAAATCAAGGTTTCTTGAGGTCTTTCAAGAAGAGAACTATCCGCTGGAGTTCCCATATAAATCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATTGTTATTTCAGAAAATTGAGGGTGTAGAAGTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595546" ref_strand="+" ref_description="SGN-U595546 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15219327|ref|NP_173115.1| (e_value=3e-45) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G16710.1 (e_value=1e-47) | Symbol: None | TAZ zinc finger family protein / zinc finger (ZZ type) family protein, contains Pfam profiles PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type | chr1:5714685-5722359 FORWARD | Aliases: F19K19.17; (*SWP) sp|Q9FWQ5|HAC12_ARATH (e_value=1e-46) Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12; ">
      <seq>aatttggatctgaatgcgcacaaccaaatcatcgtcgtgtttatctctcgtatctagattctgtcaaatatttcaggcctgagatcaaagctgcatctggcgaggctcttcgcacttatgtgtaccatgaaattttgattggatatttagaatattgcaaaaagcgtggtttctcaagttgctatatatgggcttgtcctccactgaagggtgaagattatattttatattgccacccagaaatccaaaaaaccccaaaatctgacaaactcagaagagtggtattaatcaaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="35394" stop="36366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35694" g_stop="35830" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35831" i_stop="35921" i_length="91">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35922" g_stop="36064" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="281" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36065" i_stop="36218" i_length="154">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36219" g_stop="36234" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="298" r_length="17" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U595546" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35694" e_stop="35830"/>
          <exon e_start="35922" e_stop="36064"/>
          <exon e_start="36219" e_stop="36234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGATCTGAATGCGCACAACCAAATCATCGTCGTGTTTATCTCTCGTATCTAGATTCTGTCAAATATTTCAGGCCTGAGATCAAAGCTGCATCTGGCGAGGCTCTTCGCACTTATGTGTACCATGAAATTTTGGTGATCTTCTTCTGCCATTATTTTTTTTGTTGATTTCTATATCTGTATTACAGATTTTTAGAGTTCTCTTATTATATTTTGATCATTCCAGATTGGATATTTAGAATATTGCAAAAAGCGTGGTTTCTCAAGTTGCTATATATGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATATTATATTGCCACCCAGAAATCCAGAAAACCCCAAAATCTGACAAACTCAG-AGAGTGGTGAGCTTAATAATTTTTTGACGTGTTTTTTTCTTAGAATGTGTCCTTCAGTATTAAATCCTTGGGTATCTGTTTTGATGAACTTCTAATATGGTGAGTTAATGTTGTTCTTTTGGGGTATATGTTCTTGACTAGTTCACTTTCTTATATGCAGGTATTTATC-AATGTTA</genome_strand>
        <mrna_strand>AATTTGGATCTGAATGCGCACAACCAAATCATCGTCGTGTTTATCTCTCGTATCTAGATTCTGTCAAATATTTCAGGCCTGAGATCAAAGCTGCATCTGGCGAGGCTCTTCGCACTTATGTGTACCATGAAATTTTG...........................................................................................ATTGGATATTTAGAATATTGCAAAAAGCGTGGTTTCTCAAGTTGCTATATATGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATTTTATATTGCCACCCAGAAATCCAAAAAACCCCAAAATCTGACAAACTCAGAAGAGTG..........................................................................................................................................................GTATTAATCAAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574854" ref_strand="+" ref_description="SGN-U574854 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157351555|emb|CAO41780.1| (e_value=0) unnamed; (*ATH) AT1G79000.1 (e_value=0)  Symbol: None | p300/CBP acetyltransferase-related protein 2 (PCAT2), contains Pfam domains PF02135: TAZ zinc finger and PF00569: Zinc finger, ZZ type; identical to cDNA p300/CBP acetyltransferase-related protein 2 GI:12597460 | chr1:29721243-2972885... ; (*SWP) sp|Q9C5X9|HAC1_ARATH (e_value=0) Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1; ">
      <seq>gctgaaatccagaaaaccccaaaatctgacaaactcagagagtggtatttatcaatgttacgaaaagctgtgaaggaaaagattgttgtggatctcacaaatttatttgaccatttcttcaccaccacaggcgaatgtaaagctaaaatcactgcagctcgcctgccctattttgatggagactattggcctggtgcagcagaggatatgatttttcaacttcaacaagaagaagatgggaggaaacatcataagaagggggctatgaagaagaccatatcaaaaagagctcttaaagcatctggtcaatccgatctttctggaaatgcaactaaggatatacttctaatgcacaaacttggtgaaactatttctccaatgaaggaagattttattatggtccatttgcagcatgcatgtactcattgctgtattctgatggtatccggtaatcgttgggtatgcaaacaatgcaagaactttcagctttgcgacaagtgctatgaagttgagcaaaaactcgaagccagagaaaggcatcctctctatcacaaggacattcatatgctttatccaactgaaattgatgatgtacctgctgatacaaaggatccagatgaaattcttgagagtgagttttttgatacaaggcaggcatttttgagcctttgtcaaggaaaccattaccaatatgataccctgcggcgtgctaaacattcctcaatgatggtcctttaccaccttcataatcccactgcaccagcttttgtgacaacttgcaatatttgtcatcttgacatagaaacaggtcaaggttggcggtgtgaaacttgtcctgattatgatgtatgtaatgcttgctatcagaaggatggtggagttgatcatcctcacaagttaactcatcacccatccattgctgagcgtgatgctcagaataaagaagctagacaacaacgagttctgcagcttaggaagatgcttgacctcttggtgcatgcatctcagtgccgctcttcccattgtcaatatccaaactgtcggaaagttaaggggcttttccgccatggtatacagtgcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="35722" stop="41373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36021" g_stop="36064" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36065" i_stop="36218" i_length="154">
            <donor d_prob="0.987" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36219" g_stop="36531" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="357" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36532" i_stop="36927" i_length="396">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36928" g_stop="37067" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="497" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40195" g_stop="40273" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="576" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40352" g_stop="40744" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="969" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40745" i_stop="40957" i_length="213">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40958" g_stop="41073" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1085" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U574854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1085</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36021" e_stop="36064"/>
          <exon e_start="36219" e_stop="36531"/>
          <exon e_start="36928" e_stop="37067"/>
          <exon e_start="40195" e_stop="40273"/>
          <exon e_start="40352" e_stop="40744"/>
          <exon e_start="40958" e_stop="41073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAATCCAGAAAACCCCAAAATCTGACAAACTCAGAGAGTGGTGAGCTTAATAATTTTTTGACGTGTTTTTTTCTTAGAATGTGTCCTTCAGTATTAAATCCTTGGGTATCTGTTTTGATGAACTTCTAATATGGTGAGTTAATGTTGTTCTTTTGGGGTATATGTTCTTGACTAGTTCACTTTCTTATATGCAGGTATTTATCAATGTTACGAAAAGCTGTGAAGGAAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAAGTAATTTTATCCTCTAGACATCTTTATTAATCTGATCATTCTGGAAATGCATCTAATTATCTACTTCTAATGCACAAAGTAATTTTAGCGTCTAAACACTTTATTTACTCCTAACCTTCTTCTACTTCCTCTATGAATGTTTGTTGACTGATTTTGCTGTTAATATGTGTTGTGCATTCATCAAAAGATACATCGCGGTTTGTGGCTTGCAGCCTTTTGAACTATTTAAACTATTTAGTATTTTTCCTCTGTAAATACTCCTCTGGAATATATTGCCACTCTCTTATCAAGCACTGACTATTTGTAAAATTATTTTGTTTAAAGCTGATGGACTATCAACCTCCTCCTTTTATGTATACATTCTTTTGTGTCCTCACAAATTTCTACTTGTCGCAGCTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAAGTATGACTCTTGCCTCTCTCATTTCGTTTATTAGAGTTGTAAAAACTTTTCTAATAAGAGTCATGCTTATTACACACTTGAAAGTGAATCAACTACAAGTAATCTTCTTCTCATCTGAAATGAGAACAGAGAAAAAACAAGCTAGACAAAAAAGTACTCAGGATTGTCTTTTTTCTTGTTTAACAAAGTGTCGTTTTCTGTCTTCTGATTGATTATCCAAAGGGACTTAATTTTTAAGTGACCACTAAGCTATATATCCATGAAACAAAATCGCCAAAACCTTGGGGTTCATATTTTTCTTTGTAATGTTAAAAGGCACCCTTTGAGTGCTGAAGTAAGTTTAACAAGGGTAGAACACACAATACAAATGATAGTCTTCTCAAAGCAGGACCTTACTAGACCACTCATTCTTGGTCATGAACTTGCTAATCTTTGCAATATAGTTTCACATTTGTGCATGCTGCGCATTGCACAATCAGCTGATGCCTAATAGGTGATTTTCCATACATTTATTGGAAAAACTAGCGACATCTAAACTCCAAACAGCTGTTCCCATGTACGTATAACGGAGGTAGGTTGACAATTAGCAGGGGAGGACTACATATAAAAAAAGAAATGAAACTGTAAAAAAAAATTATTGCTGAGTGCAAGTCAGATTAGATATATTCTCATCTGGTAAAATTTGTGAGTAACACATACAAGATAAAATGAGGGAAGGTCATCTAAGATGGTTTTTCCATCTCATACATAGGTATTATGATGATTGAAGGTGTTAAAAAGGAGATGAGGTTGATCTAAGGTTCACATGGAAAATGGGATGGAAGTAAAGATCTATATAGACGATATTTACCAAGTGATGTTAATGTTTAGTCGTTTGTACACTTACCTCTGGTTCGGTATCTCTCAAGAGTAATGTTAGTTGGTTAGAAGTGAATGGGGGCCTGTTTTATGTCTTCACTTCCGCATGCTCCTGGTAGCATGATACTTAGACCAGGAAGATTTCTACGGAACTTCCTATGGAGTACAACAGAGGATATAAAGAAGTTCCATTTTGTGAACCGGAGAGTTGTTACATCTCCACAGGAATGGGGGTAAAGTCGGAGTAAAAAATCTGAATGTTTTCAACAGAGTTCTGCCAGAGAAGTGGATTTGATATGGGATGGAGGGTGGTTGCTGAAAAATATGGTATGATGGAAGGGGGGTAGAGGACTAGAAACATCTCAGTCCCGTTTGGGTGCAACTTATGGATGGGTATATTATGAAAGGATGAGAAGAATCCAGTGGAATATTTTCATTTAGGGTGGGAAATGGAAGAAGGGTTTTATCTTGGGAGCACATGTAGCATGGAGAATTGATTAAGGGAAGTGCTTCCCAACATATATATATGTAGTTTCTTGGAAAAGAGAGACGACTATCCAACAAGTTCGTATGATTCATGAGGGAAGTTCACTGGAATTTGAGATTTAGGAAGAACCCACTGGACTGGGAGATCAAGGAATATCTAGGTTGAACTTTTGTACAGGGAGAACACACCACATGTTGCATTCGAGGTATGAAGATGGCAAGAGAATAGAGATGATTTGTCCATTGTCAAATCTTATTATGAGAGGTTACTACGGAGAGAGAGGGATCAAACATTTCCTACTCGACTTCCCAGGGTGCATAAGAAGCTTTACTTCTGTGTGGTTGGTAACAAGGGAAGTGATTTTGACGACATAAAATCTAAGGAAGAGGAAGATCACCTATGTTTTGGTTGCTTTATGTGCAGAGGTTCGAGCAGAGAGGTTGATCATCTCCTTTTGTATTGTCAATTTGCTGTATGCTTCTGGGCAGATGGAATTGGGGGGGGGGGGGGGATTTTGACTGCAGAAAGTCTGAGGAAGAGAAGGATCGCCCATATTGGTTGGTGCTTCATGTGCAGAGGCTTGGGCGAAGAGGTTGATCATCGCCTTTTGCATTGTCAAGCAGCTAAGCGATTGTGGACGGGTGGTCCTTGATTAATTTGGATTGCTATGGATGATGTCGGGCACAATGAAGAAGGCTTTCCATAGTTGGGCCTGAACTTCAGGCAAAGAGAAGTTCAAGGTCTTGGAATGTTATTTAGTCATTATGTGTAATATGGAAATAGAGAGATAGAACTTTTGAAGGGGTTGTCCATAACTTTGTAAATCTGTAAAATAGTCTTTTGTCTCTAGTTTCTTTTGGTGTACCCAAAAGGTACCTATTTGTGTTGATGATTTGGTTTATTCTGTTGAGGATCATATTTTGGTGTAGGTTATCTTCTTTTTGGCGTACAACTTGCATACACATGGTTTCCACAATTTTTAGTAAAGTTTAAATGAAAAAAAATAACTTAGAGATAAGTGTGACATTTAGAGAATCTAGAATTTTAGAGATTTATCTAATTGTCTTGAAAGATAAATTATTGAATACATTATTTAATTTGTCCTAAATAGCATGGAATAGATATGGATACAGAGGATGCATATTCTGTTTTTTCAAGAATGACCAGAAGTAGACTTGTCCTGAATAATTACATCCGACCTTTTGTCTTGATTCATAGTCAAAAAAGACAGGATCTAAAGGCACACAATTTTTTATCTTAACCAACTTAGGTGGTGGTAATGCTCCAAGTATTTAGAAGATATGAATTTTGTAAAATAGCTCATTTTGGACTTATAATGGGATGTTGTTAAGGTATTTTTTAGTGTGTCTATGAAATTAGATAAATCTTTCTTAGCAAGCCTCCTTCCTGGCTGAATAAAGGTTGAGATTCCAGAATGCTGGTCTGCTCAAACAAAGCATATACAAAGATCCATAACCTTAACCTTTGCTATCCAAGGGGTATCTTGTGAAGAAGGCCACTTTTCCTGGTGTTCCTATCCCTTCTTAGGCTGTAGTGCTTAATAAGTTATGTGGATTGTATGGTCTTCCTAAGAAAGAGAGACACATTTGATTAATAAGTTAACTTCACTAGTTACTCTGCATGAAAGGGAAAAAAAGAAAAGAAATTATCTGCAATTGCAGTTCTTTTTGCTAGATTCTTTATAAGTATGGATGACAGCTCTTATTTTTCTAGCATCTTATTCTTTTCTTTGTAACATTTATCTGTACTTCTATTCTTTAGGTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCAGTAAGTAGTTCTTTTAAGTTTTGTTTGCAAGTGTTGCTATATTGTAGATTTTGATGATTGAGGAATTAACTTTTGCAGACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACAACAACGAGTTCTGCAGGTGCATTTTCCGTGGCCATTAATATTGGTTGTGGTTTTTTGCTGTTCTCTGTCACTCAACCCCCACCCCCAAGCCATAAGTTAAAAATAAGAGGAGAATATGCTAATCTCTGGTTGTGGTTGTATATGATAAAAACATTCCTTTGCACTATGCTAATCTCTTTGTTATGCTTACATATGAAGTCTGAAATGATCTTGCGATTTGATTCTGCAGCTTAGGAAGATGCTTGACCTCTTGGTGCATGCATCTCAGTGCCGCTCTTCCCATTGTCAATATCCAAACTGTCGGAAAGTTAAGGGGCTTTTCCGCCATGGTATACAGTGCAAAGT</genome_strand>
        <mrna_strand>GCTGAAATCCAGAAAACCCCAAAATCTGACAAACTCAGAGAGTG..........................................................................................................................................................GTATTTATCAATGTTACGAAAAGCTGTGAAGGAAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAA............................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCA..............................................................................ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACAACAACGAGTTCTGCAG.....................................................................................................................................................................................................................CTTAGGAAGATGCTTGACCTCTTGGTGCATGCATCTCAGTGCCGCTCTTCCCATTGTCAATATCCAAACTGTCGGAAAGTTAAGGGGCTTTTCCGCCATGGTATACAGTGCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576968" ref_strand="-" ref_description="SGN-U576968 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157351555|emb|CAO41780.1| (e_value=2e-18) unnamed; (*ATH) AT1G79000.1 (e_value=4e-20)  Symbol: None | p300/CBP acetyltransferase-related protein 2 (PCAT2), contains Pfam domains PF02135: TAZ zinc finger and PF00569: Zinc finger, ZZ type; identical to cDNA p300/CBP acetyltransferase-related protein 2 GI:12597460 | chr1:29721243-2972885... ; (*SWP) sp|Q9FWQ5|HAC12_ARATH (e_value=2e-17) Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12; ">
      <seq>gcttgcaaagtatccgagtgtcatgtgccgcgatgcagagatttgaaagaacatcttcgaaggctgcaacagcaagctgattctcggcggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccttgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgaaatcgatataatatatagagataatttctcattttatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="40838" stop="42750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41138" g_stop="41175" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41818" g_stop="42450" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="671" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U576968" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576968" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41138" e_stop="41175"/>
          <exon e_start="41818" e_stop="42450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAGGTCAGTTGGCTTTTAATTTTTTTTATTAGGTATTGGGGAAGGGGAAGTGAGAATGAAGTGGAAATCACACACACCTATTGTGTGGGGAACTCCCACCAATACCACCATGCTATGAGCCTTGGTGGTAGGTCAGTTGGCTATTACCTCCCGGTATAGGTGTTCACAGTCACTTCTTTTGTATGGTAAATAATTTACTAATATTGGGAGAAGCTCCCCTATACAAGTGGGCGCTTGTAATCACTTATTAAAAACAGCAATTGATAATAGTAATAAACAAGTTATTTAATACTGGAATGTAATGTTCCCGTATGGAGTCAAATGCATACTAAGAATTCATATAGCCAAACCACACTAGATTGAGGCTGATGATGGTAGTAGCAGTAGTAATAGATGTCATTATAGAAGTAAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCATCCCCCTCTGTCTCCCCCGTTAGTCTCAGTGTAGATATCAGCTAAATGAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCCCGCTCCTTTCCCCCCTCCGTCTCCCCTTGGTTTCATTAGTCTCTGTTGATATCAGCTAAATCTTGTTCACAACATAAAATTGCAACTCTATTACCATTCACAGAGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTT</genome_strand>
        <mrna_strand>GCTTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583117" ref_strand="+" ref_description="SGN-U583117 Tomato 200607#2 [82 ESTs aligned] (*GB) gi|47156870|gb|AAT12274.1| (e_value=0) obtusifoliol; (*ATH) AT1G11680.1 (e_value=0) | Symbol: EMB1738 | obtusifoliol 14-demethylase (CYP51), identical to obtusifoliol 14-demethylase (GI:14624983) (Arabidopsis thaliana) | chr1:3938522-3940754 FORWARD | Aliases: F25C20.17, F25C20_17, EMB1738, EMBRYO DEFECTIVE 1738; (*SWP) sp|P93846|CP51_SORBI (e_value=0) Cytochrome P450 51 OS=Sorghum bicolor GN=CYP51; ">
      <seq>gaaagaaaaaggaaaatcctcaaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagtatgatgttttacattagtttgtgttttcttccattggattttatcatattctcactaacaataagttaattcaaactgtacaggaagttatcttctgaaaaggtttaagtttgcattatattcattatgcaatctaccatatgttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48784" stop="43687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48484" g_stop="48378" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="587" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="43987" g_length="1295"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="1882" r_length="1295" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U583117" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48484" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="43987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCC</genome_strand>
        <mrna_strand>GAAAGAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594337" ref_strand="+" ref_description="SGN-U594337 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggtatactaaaaaaaatctgttatcttttcttgaatttgattgatgacatttagagtttgtttatttattaatgtttgcttaagttttaagtcttttattacagtggactcatgtctgtgtgctctgattgtgtttcaagataatttgacctgtgttactgttattaaacgaagaaaatgtttatattggtcgccttagttgttaagataatgtcctcagagcttagaaatcttatgtttcttggactctccaaaaatgttgtcccacttgtgtctggatcctctaaaaatctactaactttggaggatccttcgagcaccggttgagtctttgagaagaggtggaaatatttgtttaaaggaactagcatttgcaacaccttttgtgtgaattaaccaaaaggggggcttcagttaatcacgcatgcactgtaagtttcggtttcaccatagattttgaagttgaaacttgaaaaattgagttattaaagtagtaatttttcgaacttgaatttgtgnttggacatgcgtttttgcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46432" stop="45207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46133" g_stop="45507" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U594337" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46133" e_stop="45507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCG-TTTTGCTTGGA</genome_strand>
        <mrna_strand>GGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGNTTGGACATGCGTTTTTGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577974" ref_strand="+" ref_description="SGN-U577974 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|18414136|ref|NP_567420.1| (e_value=1e-73) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G14100.1 (e_value=1e-75) | Symbol: None | expressed protein | chr4:8120715-8122406 FORWARD | Aliases: DL3085W, FCAALL.191; (*SWP) sp|Q67YC9|Y4141_ARATH (e_value=9e-75) Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100; ">
      <seq>atagggcgattggcggccaaatcggccgaattgacaaccatccaaagagagtgtcacttaaaaactacacatttttccccttctttgagcctttatcttctccacagagagcaaatttacaaccgccatcgcaaaatttcgaggaaatttcaggtcgagtatgaagaagagtacggtgtcgccgacgactgtactattcgttgttgccgcaatactaatttcttactactccgatgtctcgtcggcaaaatcagattcagacccaacgccggccccatggcctcatcaattccactcgatactgttcgtcaatttcagcggatctctaagcctaatcgatctctggtacgattggaccaatggccgcaatttcaacatcatacaagaccagctaggtgagcttctctatgatctcgaatggaacaatggcactgtgttccgctacactctagacgatggtaagaagaaatgcagttcagcgctggttgatgttggtattcttcgaccaaattggcttgacggagctacttatcttggtcaacagttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactggaaggtctattcacgtaatgactttcgaagtgggagcagttctcgaggacataaaatggcaagcccctgtatattgtttcgacaaaaaacaggttcaagatcaccctgcatcagacaacgatattctggaaattggctcgaaaggtactttaagagagttcatatagccgcgcaatttacgtaaatagctcagctagatgttcttagtaatgtaaaagtatttgccttgttttgctgcctctgcatcaatttcatctccttatgtattgaaaaaaagttgatgccatcagtgttgtgtattgcaataacctatgttgctcgaactgttcataaatggtgatggggtatgtcggatcctccaacagtagtacagttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="58726" stop="54050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58419" g_stop="58056" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="395" r_length="364" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56841" g_stop="56590" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="647" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54728" g_stop="54350" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="1026" r_length="379" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U577974" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>995</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58419" e_stop="58056"/>
          <exon e_start="56841" e_stop="56590"/>
          <exon e_start="54728" e_stop="54350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAACCATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAGGTAAGTCGGGGCGGAGACGGATTTAGAATTTTAAGTTTTATCGGTACAATTTTTTAGGGCTTGTTTGGGTTGAAGAAAAGTTAGGTTGGTATTTTTATCATTTTATCTCGGAATAATTAATCTCGATATTACTATTCATCTTTTTTGTATTCTCCGTCCGATATTATTTGTCATATTTCTATTTTTAGAGTCAAATTATAAAATCTTTGACTAACATTTTAAGATGTATTTTTCTGCAAAAAAAATTGCAATTTATAGTATTTTTCATATAGTTTTAGAATATATAATTTTTTTGTTTAAAATATCGAATTAATGAGATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAAAAATTTCGGACGAAGGAAATATTAATTACTAATATTTTTATAACTTATCTCGTAATTAATCATTAAGAAAAAGGATAAGACATTATTACATTTTTTGTTTCGTGACTATTTATGCTTGTTCATCATACCAAACGAGCCTAAGTATTTAAATTTATGTGATATAATTTGATTTAGATATAAAATTTAAGGAAAAAAACATATTTTGGAAAATTTGTAGTCTAAAATATTTTTTGATAATTTATGTGATTGTAAATTATTTTATTAAAATTGTTAGAAAAAATTAATTATTTTATTAAGAGTAAAAGTAATTTTGAAGTTAAATTGTTTTCACTTATAGAAATTTGACATTTTTCAAGGGACGGACTAAAAAAAGAATTTGTGTCACATAAATTGATATAGACAGAGTAGTATTGAACGTGTTACATCTTTATATTTATTATCATATAAAATATATTTATTATTATAGTGGAATTTAATGTATGTATTTATATGTTTGCACCAATAGTACTGGGTTTAGATGAATCTGATATGAAAGACTACGTCTCATTTGTCTATGGATTTGACATAATTCAATAGCTTAAAGTTAAATTTTATGTCTATGTCTCTCTCCATCTCGTTACTTTTTGCTTATCGAGAGTCAATATTGTACCTTCGAAGATCATTATGATATCTTAATTAAAATCTGGATATTCAGTAGCTACATAGAAAGTATTATAAGTTGTAATATTTCTATATATCACATATATTGGTACAAAGAGAGTATTATGTATGGATAATTTGTCAAGATGCTTTTATAGGATCCTCGAAATTAATTCAAAATTCTAGCTTCGCTTTTGTAGGTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTGGTACTCTTCATCCCCTCCACCCCTCTTTGTTTAATCTTCCATTTTATGACGTTTGGACATGAATCGTTTGATATTTGAAAAGAATGTAGTATGAAGCTAAGTTGAAAAAGGGCATTTGAGGTTGTATTAGAAGAACACAATCGACGTTTCATAAGTGAAAACTTGAAGAACTCCTAAAAACTATTTTTCAACTTTGATTTCCATATTTCATGTTTGAAGTTGAAATAATGAACAAATTTGATAAACGCTAAATTGAAATAATCGCCAAATAAAGGAGGTGTAGTTGCATCCTTGCTACTCTCTCCGTTTTGGGAAGAGGCTTTGTTGGTGTAGTTACTTGTTTGCTACTCTCTCCGTTCCATTTTGGGCCTTGATTTGGCACAAAGTTTAAGAAAGTGAAGGAGATATTTAAATCTTGTAGTGTTAAACTAAAGACGTGAAAAATATATTAAAATAGCATTTGAATTTATGGTCTTAAGCATGACGTGGGAGATTGAAATTAAAGAGTTACTGCCGATAGAAAGTGGCATACGTTGTGAAACAAACTAAAAAGTAAGAGACATGAATTGAAATAGAGGAATGTTATTTCTTATGAAGCCTTTGGAAGGAGAAGTGTTTGAAGCTTTTCTATCGAGTTATCATGAAGTTCAGCATGTTCAGGGGCTCGAGTAAACGTTAAGACTCATTAAGTTGTTTGTGGTCATCGACAAGTTCAATCACATTACTTGAAAATTCAAGCTTTTCATGATTCTTAGTTCTTCTATTTCCTCCTACTATGCAGTCATTGTTCTATTAGGCTAGATGTATGCAGCTCCTGTTACTGCTTTCACTGAAGTAGACGCTTCCCTTAAAGTAGTCCGTCAACTGAAACTTGTCTTGTTGTGATATTGTTACATTCTTTTCATCCTATCAAGAAGAGACGATAACTGTCCAATTCTTCCCCATCCCCACCAACAAATTAAGGAACGACGAAAGCTGGGGGATAACTTGTTAAATTGCTTGGAATCAAACATTAACTTGCTCCTTTCTTATTGACATACATATTAAAGTAGAACCTCTCTATAATGACGTCATTTGATTGGATACTGTTTGGCTGCTACAGTGAAATGATGTTATAGAGAACACATAACATAACATAAGATGAAAATTTGTTTTAGCACATCAACATAAAAGGTATTATTATATCCCTTAATTTGTTTGTGCAGCGTATGAGTTCGTTAGTCTTCTCTATCTCTGCTTTAGTTGTTCCTAAGTATCAAAAGTGGCTAAAGTTTTGCTGGTGAATTTGCTATAACTTGTAGTTGGAATTTAGCTGAAAAGCTACTGGGGGCCATTGCTCACAGCTACTGTACAAACGATATTCCTTTTTGTTATTCGAAATGATAACATATTTTTGCACATATATATAGACATCAGCCTTGTTACATCAACCTTCTTCTTGTTACGAGAAGTAAGAACACGAGTTAATGAAATGTTTCTTGTATCTTAACTCAATCAGCTCTAGTATTCGTAACCAAATCCCATAAAGTCATAGCTTCATTCAGCTATAAATGAACTAACAGACCAACGGCATGGATTAGTCACTAGGCGTAACCAGACAATAATATTTATCTGCATTTGATGGAACTTCTTATTAAAGGCCAATATGAGTTGAATAAATCTGATCTTTTTACGCTAAACGTAAGATCTAGTCTATGTACATCCTGACATATAAAGCTCAACTAGCTTTCTGAAGTTCTTCGTGTATGTACAGCTACCTAACGTGTTCTGGATAGTTGAGTCCTTTTCGATTGATCTCATTGTTTCTATACTCTTTATAGATAATGCTCGTGTTACAGGATTAACAAGTTTGATGTTGCAGGAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTCTTGCTGCCTCTGCATCAGTTTCATCTCCTTATGTATTGAAAAACAGTTGATGCCATCAGTGTTGTGTATTGCAATAACCTATGTTGCTCGAACTGTTCATAAATGGTGATGGGGTATGTCGGATCCTCCAACAGTAGTACAGTTTTAG</genome_strand>
        <mrna_strand>TGACAACCATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGACTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCCCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTTTTGCTGCCTCTGCATCAATTTCATCTCCTTATGTATTGAAAAAAAGTTGATGCCATCAGTGTTGTGTATTGCAATAACCTATGTTGCTCGAACTGTTCATAAATGGTGATGGGGTATGTCGGATCCTCCAACAGTAGTACAGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581273" ref_strand="+" ref_description="SGN-U581273 Tomato 200607#2 [45 ESTs aligned] (*GB) gi|76161004|gb|ABA40465.1| (e_value=1e-44) ribosomal protein S27-like protein [Solanum tuberosum]; (*ATH) AT3G61110.1 (e_value=2e-44) | Symbol: None | 40S ribosomal protein S27 (ARS27A), identical to cDNA ribosomal protein S27 (ARS27A) GI:4193381 | chr3:22622621-22623785 FORWARD | Aliases: T27I15.200; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=2e-43) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B; ">
      <seq>attgataccgcttccagcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcan</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61072" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61368" g_stop="61461" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="225" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63501" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="540" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U581273" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61368" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAC</genome_strand>
        <mrna_strand>ATTGATACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577913" ref_strand="+" ref_description="SGN-U577913 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|82623413|gb|ABB87121.1| (e_value=3e-16) ribosomal; (*ATH) AT3G61110.1 (e_value=1e-17) | Symbol: None | 40S ribosomal protein S27 (ARS27A), identical to cDNA ribosomal protein S27 (ARS27A) GI:4193381 | chr3:22622621-22623785 FORWARD | Aliases: T27I15.200; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=1e-16) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B; ">
      <seq>gcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttgtttaggatgtgaagtgccagggttgcttcaacatgtaagtttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggagaagtaaagtcgatgaatttagtgatatttggaacgttgtagcgtttgagattgaagaatgatatttgaaaattgaagttgatcaacttggtaatattttcaaacttagaaaaagtagtatagttgaagttaagatatggttaatggaaagtaaagttgatcaatttagtgatattttagaatttagaaaaaagaagtatatttgaagttgaaatatagtatttggtgattaaagcttggaaaaaagtagagttgaagaatggttgatgataagtaaagttgatgaattcattaatatcccataataagtagtatttgaagctggaaaacaagttaggagaactcatccttgaaatttatccgaaaaatcattctaatttatacaaccaaagaataattaaaatgcttttttgtataaaaggaaacgaacttctccaaacagagttggtagtgcttgatgaaccagttagttgacgtctgtagagagattatataattaaccaagatagttgcttacggaaagtagaaagtatatgaacacgacctgaatctttgaggaaggacctgagttaggtagtgtttgatgaaccagttagttgacgtctgaagaggttatatatgaattcttctgttaagccaagatagtagtcgcctacggaaagtagaaagtatatgaacacgaactgaatctttgaggtaaggacctgagtttggttcagttccgatttgaccctcaataacatctttcatattagtttctgtcgtacaaatataactaggatcgcttctcagtctctttctctctatatgtgtgcagaacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61088" stop="63751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61387" g_stop="61461" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="176" r_length="101" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="63451" g_length="1368"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="1545" r_length="1369" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U577913" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61387" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="63451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGC-TTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTC</genome_strand>
        <mrna_strand>GCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTGTTTA-G.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579733" ref_strand="+" ref_description="SGN-U579733 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ctggtgggcgtgctagactcaccagttggctgtctttcaagagaaagggagattacagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="62958" stop="63746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63258" g_stop="63446" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U579733" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63258" e_stop="63446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGGCGTGCTAGACTCACC-GAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTC</genome_strand>
        <mrna_strand>CTGGTGGGCGTGCTAGACTCACCAGTTGGCTG-TCTTTCAAGAGAAAGGGAGATTACAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581254" ref_strand="+" ref_description="SGN-U581254 Tomato 200607#2 [49 ESTs aligned] (*GB) gi|76161004|gb|ABA40465.1| (e_value=2e-44) ribosomal protein S27-like protein [Solanum tuberosum]; (*ATH) AT3G61110.1 (e_value=3e-44) | Symbol: None | 40S ribosomal protein S27 (ARS27A), identical to cDNA ribosomal protein S27 (ARS27A) GI:4193381 | chr3:22622621-22623785 FORWARD | Aliases: T27I15.200; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=3e-43) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B; ">
      <seq>gggcgattggcggccaatcggccgaattgctctgccagcgtcttcatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtacttgatagatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65109" stop="68012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65410" g_stop="65500" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="115" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="217" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="246" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67712" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="639" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U581254" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65410" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTT</genome_strand>
        <mrna_strand>AATTGCTCTGCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590841" ref_strand="+" ref_description="SGN-U590841 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|76161004|gb|ABA40465.1| (e_value=2e-44) ribosomal protein S27-like protein [Solanum tuberosum]; (*ATH) AT3G61110.1 (e_value=3e-44) | Symbol: None | 40S ribosomal protein S27 (ARS27A), identical to cDNA ribosomal protein S27 (ARS27A) GI:4193381 | chr3:22622621-22623785 FORWARD | Aliases: T27I15.200; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=2e-43) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B; ">
      <seq>ggcgattggcggccaatcggccgaattccatggggatccgattgctctgccagcgtcttcatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65111" stop="67948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65415" g_stop="65500" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="130" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="232" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="261" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67648" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="590" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U590841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65415" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTAT</genome_strand>
        <mrna_strand>CTCTGCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590568" ref_strand="+" ref_description="SGN-U590568 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ccttttaaggcacggttgctttaacatgtaagttcattttttcttgttcatttatcttagttggtgctttcgatatgaatttagtgacatttgggaaaagaaaatagtgattgaagttgtaaaatggttatggagaagttaagttgatgaatttagtgatgcttatgtaatagtaattgaagttgaaaaatgttatttgaaaaaatgaagttgatatctttagtgaaatttgaaataaaaaagtagtatttgaatgtaaaaatggtaatcgaacattagagtttggaaaaaaatatagcttttaagttgagtaatgtttaacttgtgtttgggatacatttcactttgttataagctccctacttcttttggctgaaaaaacaggccagctagttttatgtagtttggggaactcatcctaaaaatttaacagaaaagtcattctaatgtatataaacctaacaagtttttatgtactttttgaataaatggaaacaattttcatgtccatagtaaaaagtagaattttatgcacactaaccgaatgttttcggaaggatggtgggatatccaatcctcatcttggttcagtttcaacctcacctgcaataacatctctcttgtcatacaatgatatgttcaccctaagtcttattctctctctatatgtgcagaacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="66346" stop="67673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66644" g_stop="67373" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U590568" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66644" e_stop="67373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGAC</genome_strand>
        <mrna_strand>CCTTTTAAG-G-CACGGTTGCTTTAACATGTAAGTTCATTTTTTCTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTTGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTATGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTAGAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578897" ref_strand="+" ref_description="SGN-U578897 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157360002|emb|CAO68746.1| (e_value=2e-164) unnamed; (*ATH) AT5G47860.1 (e_value=1e-156) | Symbol: None | expressed protein | chr5:19398789-19401648 FORWARD | Aliases: MCA23.20, MCA23_20; ">
      <seq>ggcgattggcggccaatcggccgaattgaacttgcgtagttgcaatgaactgcgtcactgctcccaaggcgaattggcgatgttcgccggcgatttcgttctactccgattccactaaactctacaatcggagcagcatccgcttctacgccggaaaccggaactccagcagaatcagatgcaacttgaaagctaccggcagcagcaacaatcagccggaaacaagtaccggaatccagctatatagagatattgagagattacttacagagacagtgaagcaatctcaagattggggaagttcacaggactgggatgaaatcgagggagcatgggtattgcaaccaaaaacatcaaagccgaagttagtcgtacattttattggaggtgtttttgttggggctgctccgcagctttcttaccgcctgttccttgagcggctcagacagaaggatgtcttggtgattgctacaccttatgctagtggatttgaccatttctacattgcagatgaagtgcagtttaagtttgataggtgccttagatttctccaagaaagagtacaagaccttcctgtatttggcattgggcactctttaggatctgtaattcaccttttgattggagctagatatgctgtgaaaagaaacgggaatgtattgatggctttcaacaacaaggatgccagccttgcagtgccgttgttctcatctgttcttgttccaatgatgcaaaacttaggaccagttttatcacagatcgcatcatcaccaaccattcgtcttggggcggagatgactatgaagcaaatagagaaccttagcccctcaatcatgaagcaagtttttccactggttgagcaactgactcctctatacacggacttgattaatggaaaagaaaatttcactccaagaccagaagaaactcaaagactgataaggtcctactacgggatttcgaggaatctcttagttaagttcaaagatgatacaatcgacgaaacttcaacactagctcaggtgctcagctcaggttccgccatcagctcaatgctggatatgtctatccgcactcttcctggagaccatgcgcttcctctacagcaggctctaccaaatgctcctccaggaatgacggacgctgttaacaggagcagcgagctattggcgaacttgacagcaggaacgccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactctataattcttaattctgggaattcaaaggacttggatatgcttgtggagacaataacatcatggatgtactctaacactggcccaaaacttttacagtgatatatgctaaaaaaaatatatgtatatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttgattgacatttagtactcatgtataataatgtgactaactttttgaatgttttggtataaaaaggtcaattatttgtaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75755" stop="68174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75444" g_stop="75225" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="259" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73529" g_stop="73463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="326" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72968" g_stop="72844" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="451" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71959" g_stop="71851" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="560" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71774" g_stop="71711" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="624" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71625" g_stop="71570" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="680" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70437" g_stop="70330" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="788" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69859" g_stop="69710" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="938" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69709" i_stop="69290" i_length="420">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69289" g_stop="69119" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="939" r_stop="1109" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68866" g_stop="68468" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1507" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U578897" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1469</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75444" e_stop="75225"/>
          <exon e_start="73529" e_stop="73463"/>
          <exon e_start="72968" e_stop="72844"/>
          <exon e_start="71959" e_stop="71851"/>
          <exon e_start="71774" e_stop="71711"/>
          <exon e_start="71625" e_stop="71570"/>
          <exon e_start="70437" e_stop="70330"/>
          <exon e_start="69859" e_stop="69710"/>
          <exon e_start="69289" e_stop="69119"/>
          <exon e_start="68866" e_stop="68468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAGGTCTGTTGCCCTAATCGCTCGATTACTTACTAGTCAATACTTGTAGTAATTTCTGGCGGAACTTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTTAAAATATCCTATTGTTTTGAAATAAGATCTAAATATTATTTTATTATTTTGTTAATCATTATCTTCATCAAATACGTGTCGCCTCCCACCAACGTGTATTAGGTAACTGTTCCACCAAAGCTAGGACATGTGGGAGAGGAAGTTACCTAGTGTTTTTTTTCTTCGTTGGAGTTTGAACCTGAGACCTCATGATTCTTATCCGCTTCATTGATAGCTAGTCCACACCCTTGAGTGCATAAGATCTACATATTTAGAAACAACTGAAAGAGTAGTTGACTAAAAGTTAACAATTAAAAGTATACAAAAAAAAATTGTGGTGAAAGGTGGAAAGCGGCAGTATTTGTAGCTAAATGGAATGAGTTGCTATACCAAAAGACTGCTATAACAATTACAAACTTCAAGTTGGATAAAAAAGAATGTCGATAAATATGGTTTGCGACATATTTTTCCTCTTCCATCCCTCTGTCCTTAATAAGCAACACAAATACATTATAATTGAGCTGTGCAAAGTGAGCTCGACGGCTTAAAGATTAGCCATAGTTTCCTCCTTGTGCCTAAGGCAATTGCGCAATAGGACAGTATTGGCACAAAAACCAGGACAACCCCCATAAATTGCCTTTTTGAAGGAAGAATAACTGTTGGAGGTAAGTATCAGAACAAGAAAGAAGACAAAAAAAGGAATCGTTTATCATGTGCGCACCTTTAGCGGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAGGAATCGTCGCACATGCCGAAGTTGGCATTTCAAGGAAAGGTGACATTATGAATATAATCTCACTCTTAATGAACCTTATGTCTTGTACACGTTGACTTGCCATCAAGGCTCTTAACCCTTTTTATGGATCAGTTCTGCCGTCTACGTGCTATTACCTGTTTGTTAATAAATCAAAAAGTACTTCTAACATTACAGTAATGGCCCTACAGCTAGAAAAATAAATCGAAAGCAATGCTACAATTATGTTAGCTGTTTTTAGCAACTACATTTTGTATGTGAAATTGTGAATGCACAAACTGATGGACGCATGCACTTGGATATTATATAATTGGAATCTTGGTGATGAATTTTTACTTGCTTTTTTAGTTCATTGGTATGATTAGTCGTGTTTTTCTAACCTAATCTATCCATAATGTCAATTATACACGGCCATATATGATTGTGAATTTGGAGTTCTAATCAGATGATTGGTGATTCTTGACTTACCATTGTCAGTTATACAGTGTCCTTTTTCGCTCATGAAACCTAAAAAGAAACTACTGATCATGTTTATTCACAGATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAGGTTACTAAAGGAATTCCCTAAAAATATGCTTTAGTTTCAGAAGAATTGAATCATGAAAATTCTTTCCTTTTGTGTAAATTTACAAGTGTATTGATATGCAATTTGCATCCTTTATCTCTTACCCCAATTTTGCGTTACTTAAAACCATTTTTCGGTTGTAACCTTTAAACAACCTTTTGTCTTCCAAATAAGCTTAAAGACAAAAAAGAACTATCTAGTTTGAGAGGGCACATAATTACTGTTAGATTTGAAGGAATCGGTCATGATGCAACTTGCGTAGTAAGCATAATGTTGGATCAATATATGTTATGTGATTATAATGTGTGTCTGGAATGGACGTTTATATGATACAATTTCAACTGTGTGACAGTAAATAAGATAGTAGGTTGCTTGTGAAGGAGAACAAGGACGGTGGCCCACACATCCATGTTCTATATACATGTTAGAATACTCTGATGAATTATAAATGAAATAAACTCAGTTTGCTATTACAGGGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAAGTGAGTTGTTTGATCTTGATGCTAGGGTCCATCTTATTCTATCTATGTTTATTATGTGCTTATTATTTGAAAGCAGCATCACTTCTTTATTATATTTGTGATGTATATGCACCTTCGTATCATTCTGATTTATAGTTAGTTTTTCTATCTTTTTCGCATTGCTGATAAGCAGGATAGGAAAAGTAGAAGATTTTAACTAATTAGTGCACCAATGGGGTGCCGGTAATATTAATTTCTTCCATTCTCTCTTTCACTGTATTTAGAACTGGAAGGTTGACCTCTCAGATTTTCAGTAAGCCAGAGAAGTGCTCCTCTTTTTAAATAGTATCTTGTTAGATGATTCAGTAACGATTATGCACTTTCTCGTAGAAGTGTACCGAACTTTATCCAGTGGTTTACCAACTGAAGGCATGCTTTACTTCAGTAGTTGGTTTAATAGATTTCCAACTGTTTAATCAGACTTGTGCAGAAAATAGCTGTTTTGATCATACTTGCTAGCAAAGATATTTTTGCTATTGGTTGTATTAGCCTCCTGATGTCCATTCCAGCAGTGTCATTTTATAGCCCATGTCAGCCCCTATTGTGAGTTAAGTGGTCATGTTTTACTTAAGTAATTTGGTAAAGGGATTTCCAACTGTTTAATAAGACTTTAAAAAGCTAAGCTTCTTATGCTATTAGTTGTATTAGACTACCTGATACCCCATTCCAGCAGTATTATTCTATAAACTAGTATGCTAATACCTGATGATGGTAGCTATAATCCTTGTCCTGTTTTCTTGTCTCATCCGTTAAGTGGGGTAAATATAGTGCTTAGTCTTATTAACATTGTGAGACAGGGATATGTTGGTGTTGCAACAACTTACTTTTATTACATTCTGAGACAGGGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGAGTGAGTTTCAGCTTTTACCGAAGATGAGACTGTTTTATCATGCTTTGTTTCTTATGAATGTCCATTGGTGACATAGGTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTGGTAAGTTACTGTATCTCAGTAATATTTTTTACATAGAGGTAAATTTGGTCAACTTGGTCCACAACGTTTGATGCTTGATGCTCAGGAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAGGTACTTGATGGATTTATTTTCAGCTTTATCCTGAACTCGTACAACTTTAAAATCAGTTTTAGGGATGCAAAGACAGATACAAATGGAACTGATGCGCACAGGGTTTATTTCCCATATTTTCCTTTCATTTGTCTATCTTTTTTTCTTTTTTCTTTTGGTTGGTGGGACAGGGTAGGGGCTGCAAAAAACTGTATCAAATTAGATTCAGCTTCATAAGCTTAGGTTGGTCAAGTTGCTGCATGTTCATGGGTGATATGGGATCATTGTATGTCTTTCCAGAATTGCAGGAACGATCTGTACAGTCTGCATTAATTTCTTCCTCGACACCTTTTATATTAATTTCTAGTTGTAAGACTAAACCTAGGTATAGCATCTTAAATTGTGTGACTTATCCTCAACCCTGTTACAATTCTAGTTTCATCTGGCCTGAGCAAAATGAGGCTTCTTTAGAGTTCGTTATGCTTCAGTTACATCGAGTAGCAGAGTTAGAAGTTTATGTGTAATTTGCTTTTAGGCAGCTTATCATATAAAGGGGAAATATTCTGCACTCTCTTGTGTTTGAATGATGGAGACTTGTCCTTAGTTTGAACTTCTATATTCCAAATCTTATACAACAACATCTATGCCTTAGTCCCAAATAAGTTGGGGTCATCTATATGAATCCTCACTGAGTCAGCGTGTTCCTCATTTAAATTCTAGAACTTGTAGGAAAAGGAAAGTAGAAAACATTGATGGACCTAGCTATGAGAATATTGTAAATTGGTTGAATCAAAGCTTTTGCTTTTATTGGGTTTCATTTGTGGAGAACCATATTTTGGTGTAAGTTGTGTGTTTTTTGGTATACGGCTTGTTATAAGAGGATCTCCCCATCATTAATAACATTGTTCACCTTATAAAAAGAATTCAAGTTACTGCTTTTATACTCATCATGTAGATGTTCATGCAAGTAAAAAACAGTAATACATGTACATGTTTTAGGTCTCCTGTTAGACCACCAGGAGTTTCAGTTTCTGGACATTTTAATGTGCACAATAATATATGTGTGCTGAAGCCCCGCAGCGTGGGTAATCCATCACCATCTTAGCATATTATTGGAACTCTTAACAAGCTTCCTATTACTTTGTTTTCACAGGATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGGGTAAGTAGCTTAATTCACCAACTACCCAGCTTCTGTTCAACGTTCTTGTTAGATGACTTTCACATGTGACATTATGGATGTTTTTTCCTGGATAAACGGGTTGGATTGAGACTATTTTTGAGTCATCGGATGGATGGATGCCAAGAGTAGTAAAATTGCCTCTACTTAATTGTGTCATGTGCAATTGCTCAAACACAAACGATAAGAATTTCTAATCTAACTTGTATCCATGTCTACTCAACTGTCTCTTGAAAAAATGCTAATTGAGGAAGAGCATCCTTCATTTTCACATACTTGAAGGTTTTGTTCATTCTTTTGTGCCTTTGGTTGACCTTCACTTTTTTTGTTGGATGCTGTAGTTCAAACACTAGGTCACCCTGGTAGTTGTGTTAGTCACTTTTTCATAAACTTTCACATGAAACTGAATAAGAGATACCTTCTTTTGCTCCACTCATGTTCTATATCTACAGGCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTGGTATGGAAAATTTTGAGATCTTAATGCTCATAAACTATAGCTACATATTAAACTAGGTACATATCATGAACATCTTTAGGTCACTTTATTGCTACTTTTTGGTGTAACTTGTGTAGTGTTTATTTGTATGACCAATTCAATGACTACTATGCAAATGTAGAGCAGATACATGTAGGGATGCAATGGGGTGGGGCGGGCTTGTCCTTTTGGGGGCAGGTATGGGGTGGGGCGGGTTGCAGGTTTCACAAATCAGTTTCTTAACAAAATCCCTACCCAACACCCACTCACCCCGCCCCCAACCCAGTTCTTAAAAGTAGCAATTATGTCGTAGGAAATGGGATTATAGAGTAGCTTACACAAAATATATATCTTCATTGTCCATAATTATGTAACTTTTCTTATCTAATATGTACACTACAGATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTTGTAACTGGTAAGTGGTA</genome_strand>
        <mrna_strand>TTGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA............................................................................GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG.....................................................................................GAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG............................................................................................................................................................................................................................................................GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTTGTAAC-GAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600398" ref_strand="+" ref_description="SGN-U600398 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttagattttcctgattttgcgaaattaagtggtttgactgaaaatgctgccttttatttttctgtgtctgcttggtgtaacttgtcttctatcgagcaaaattaacatgttcaatttccggcatgacaaaagcggcgatatcttttcatttgttctagtcttagctaacagagttacccatattattggtaggaggtagtaaatattgagtggaattagtcaagtgcgttataataaaaaagatttagcatggaaagtactctctctgttccactttatgtggcataattcagagatctgaaatattttaatttttggtgtgtaattaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75462" stop="74530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75162" g_stop="74830" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U600398" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75162" e_stop="74830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTT</genome_strand>
        <mrna_strand>TTTAGATTTTCCTGATTTTGCGAAATTAAGTGGTTTGACTGAAAATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565373" ref_strand="+" ref_description="SGN-U565373 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157350832|emb|CAO40947.1| (e_value=1e-85) unnamed; (*ATH) AT1G24090.1 (e_value=3e-69)  Symbol: None | RNase H domain-containing protein, very low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profiles PF00075: RNase H, PF04134: Protein of unknown function, DUF393 | chr1:8520823-8524... ; (*SWP) sp|P64955|Y2228_MYCTU (e_value=7e-12) Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c; ">
      <seq>ctcttcgcaatttgttcttcaattttgcggtcgaagattggcgcaatttcatcaactaattcaatcggagattcttggtttgtttggaaatacagtaggaggaattgatttagctatttttactcaaagtttggatttttgaagcaaaagggaagaagaatcaactgtaacaatgttgagtatgttagtattgatctggaattaagttttacaggaatgcgtcaagtctgagggaagtcccatgtaatgaattcttgtttcatgcatgttctgttgcaatattgacaagcactacatatctgcctcgaagagttcaatttgtcgaagtctggtgatatcttggaggatgagcttttgcacatgcttgaattaaaaagtcgattttgacttgtttctggatagaattagcatctaacaagtgtagtggtgataattctcttttacggaagttttatcccgttccaataatgaaggaagacagagatggtttctttgttgttaagaaaggagatattgttggagtctacagaaacttgggtgactgccagactcaagtcggatcctcgatatgtgatcctccggttagtgtgtataaaggctactccatgccaaaggacacggaggaatatcttctatcttgtggacttaaaaatgcattatattctatcagagctgcagatctgactgaaagtctctttggggctctagtaccatgcccttttcagcatcaatcttcttccaaaggtggagcgtctgagcatacaccgaagaagaggtctcaggaagcaatgtggtcagaatatgcggatgctgttggatcagttgttgcttcaaatgattccctaagaaagcatatcaagttagaacctcctaagggtgaccagcaagctctatcatccggtgtttatgctgttggaatgaaggaagctgatcgtggttatcctcagcagcggtcttgtactcttgaatttgatggtacttcaaaaggaaacccaggacaagctggtgcaggagctgtagtacgagctgacgatggaagtttgatctgtaggctgcgtgaaggtttaggaatagcaacaaccagtgttgctgaatatcgaggctttatcttgggtttgaaatatgcacatagcaaagggtttacaagtattcgtgctcagggtgattccaaacttgtttgtatgcagatccagggtctatggaaagttaaaaatcaaaacatctctacgctatttcagcaggcaaaacaactaaaggataggtttttttctttccgcatcattcatgttcttcgggaatctaactgtgacgcggatcagcaggcgaacttggctattgaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactatatagaagtggctaaaagcagatgctctctccgtttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="84941" stop="76146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84641" g_stop="84577" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84576" i_stop="84398" i_length="179">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84397" g_stop="84257" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="206" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84256" i_stop="82949" i_length="1308">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82948" g_stop="82589" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="566" r_length="360" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82588" i_stop="81925" i_length="664">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81924" g_stop="81766" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="725" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80863" g_stop="80783" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="806" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78904" g_stop="78809" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="902" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78655" g_stop="78515" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="903" r_stop="1043" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78435" g_stop="78292" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1044" r_stop="1187" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="77357" g_stop="77250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1188" r_stop="1295" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="76951" g_stop="76900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1296" r_stop="1347" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="76807" g_stop="76445" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1710" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U565373" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84641" e_stop="84577"/>
          <exon e_start="84397" e_stop="84257"/>
          <exon e_start="82948" e_stop="82589"/>
          <exon e_start="81924" e_stop="81766"/>
          <exon e_start="80863" e_stop="80783"/>
          <exon e_start="78904" e_stop="78809"/>
          <exon e_start="78655" e_stop="78515"/>
          <exon e_start="78435" e_stop="78292"/>
          <exon e_start="77357" e_stop="77250"/>
          <exon e_start="76951" e_stop="76900"/>
          <exon e_start="76807" e_stop="76445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCGCAATTTGTTCTTCAATTTTGCGGTCGAAGATTGGCGCAATTTCATCAACTAATTCAATGTATGTGATCTTCATTTGTTTATATATGTATATATTTATTAGTTAAACACAACAATTTTGATTTGACTACCCATTTTTTGTTGATTTTTTTTCAAAATTAGGGTTCTAATTTTTGGTGTAGCATTTTGAGTTTTCTTCATTTTAGTGTTATTGAAGCTTCTATTCTTTGATTTTATCAGCGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGAGGAATTGATTTAGCTATTTTTACTCAAAGTTTGGATTTTTGAAGCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAGGTATTTTACTTTATTTTTCCATAGTAAGTGGCTCCATAGTAAATAATTTAGTAACTGTGACTGGCCTTCCTCGGGAGTTTAGTGTAAGGGGCTGTCCTTTTTTTGCATTCTTGCTTTGGTAATGTTTCTTTTGAATCGAGAGTAAACAACATATATGCCTCCCAAATACTAAGATAGGGGTTATGTTTGCGTAATCCTACCCTCCCCAAACTCACTTGTGGGATTACATAACGTTTGTTGTTGTTGTCGTCGTCGTTGTTGTTGTTTTTCTTATGCTGATCAACAATGAGGAGAGAAAGAATACTTTTCAATTTGTTTGTGACTCGGAGTTTAAGAAATTAATTTAGCCTTTTTACTCAAAGTTCGGATTTTTGAGGCAAAAAAAGAAGAAGAATCCAGTGCAACGTTCTTGAGTATCCAAGTTTTGAGCTGGAATTATGGTGTTTTGCTTTTTGTTCCACAATAAGTTGCTCCGAAGTAAATAATTTACGATGGGGTTGTAATAGACTCTTGTGATCAGCCCTTCTCTTGAGCTTTAGTGCACTAGGCTTCCCTCTTTGCATTCTTGCTTTGATAACGTTTCTTTTGAATAGAAGGTCTATGGGAAACTACATCTCTACCCCACAAAGGTGGGGGTAAAGTTTGCCTATATCCTACCCTCCCCATACTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCGGTAACTATTGGAGGAATTTATATCTGCATTTTTATTATATAATGTGTGTATGTACACATATATATGTCTATATGTATACAAAGCTAGATATATGTATGTATGTCTGTGGATTTATATGGTGTCAACTGTGACTTTTCTCACTTTTCCCCTTGGTGGCTTGAACTCCCAATCTATTAGTTGGCACTGGAGTGCTCTTGCCACTGGATAAACTTCACTTGTCAACTTGTAGTTAATATACATATAGCGGATGCTACACCACATTTATCTTATCTGTTCTTTTCCTCGTGAATTTATGCAGATATAGTTGCACTGCAAGAACTTCATAAAATAAGTTTGACCTTATTTATTTGCTACATCTTCATTTACATAGGTCGACAGGAAGCTGGTGCATAATTTATCTGCAGATTTCAGCATTTCCTTGATGCTTTCCTTGTATGAATAAAATTATTTTTCAAAAGGAATAACATTTATTACAGCTTCAACTTGGTTTTCTTAATCAATGATAAAGTTATAGAAGTGTAGGAATTTCTCTTACAGAATAGGGGTGGTAAAGGCAGTTCCGTTATCTGTGTCCATCAATGGTTATATACCAATGTGCATGAAATGGGAAATATATCAAACTTGCAGTGCTTTAATCGGTTCCCCCTGCCCCTTTCTTTGACAGATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCGGTAAGTTGGGGCTATATTAGCTTTTTGTGTAAGTCGGTCAGCGTTTATAGCAGTTGCTTTTGATGTATATCTCGTTTCTTGTTCTACAGAGAGAGCTAACTTAATGTGCCTATAGTTTTTGGTTATCTTACAAAGTACATTCTTCTATTTGCACCTCTCTGGATATGGAAGCAGGATTATAACAGTAGGGGCTTGTTTGCTTAATTTTCCTTAAGATGCCATAGTAAATGGTCTCACAACTTACATGAGAAAGCTAGTTATTCAGCTGGAAGGCAATTTTCTTTCCTAAAGTAGATCTACTTGGAATTTGAAGACTGGATACTAATCCATTGTGAGCAAAATGTCCGTATTTTTCTATTATGTCTGGGTAACCCTTTTTGAAGAAATGATTATGTAAGGAGGTTGAAAAGTCTCCAATACGGTACCTGTTAATGAGCTAAATCTGTTTAAACGGAATACTAGTAGCTTGTTAATAGGTTTCTACAGCTGTTTTTAGAAATATCTCGATATAGCAGTAGCAGTACTTGTCGTTGACAAGTCTCCGCAGCTATTGTAGTTGTGTATAAATAAAACTAAAACTAAAAATAGGTCAGAGTGGGCCATTAATAAGAACAGTAATGAGTAGATTGTCTGGCTACATACAAAGTATTGAAAATAGAAGTGTATTTCAATAAAATAAAAATAGGTCATGCTGGGTGGCTTATAAGAAAAGTAGCTTGCCAGCAAGTTCTTGCAACTGTTGTTATCTTTGCTTTTTATTATTTCTTAGTAAAAACTCATGTAAGGTATTGAACTTTATTAGATTGAACGTCATAACAAAGGATATGTAGTTCTGTGAATCATTTCAAGGAGCCACATCCTAGTAAATGTAGCTAGAGATCTGAAAATACTATTTCTAGTAAAAGGTGTCTTTCCGTGTTACAGATTGCCATAATTCTTCTGATAAAGAAGATTCCAGTAAGTTATTGTGATGAAAAACATTTATAATGTGGAAGGAACAGCAAAAAACAGTATCAGTATCATCCTTCCTGTTTAGAATTTTTTTCCTCTCATTTGTCATCTAGTTTATTACATGTGACGTGTGTATCAAGTATTTTATTAGATGACGGGATGATCCCAGCTTACCACGTCGATGTGTTGATAAAGCAAAAAGAATGGTGGAAATGGAAAAAGAATTAATGTTTCTGACTGAAATTTCCCCTAATTGACTAACAAATTCAAGGGCACTCTCAAATATGGATAAAAAGTTCCCTATTACTATTCTGGTGTTGGTAATAAATATAATTAAGAGCTATAATCTTCAACTTCTGCGACTGCGGACTAGGCTTAATAACAAGATGGGAAACCTTTTTTCCCAAACCGTTGCATGGGATGACTTTTCGGGAGTGCTGAGTAGTTTAAATGAACCAGATGGATAACCTTCGTCTTCTCTTTGATGGAGCTGACGTCTGGATATTTTGCTGAGCAATTACTGTGCTTACCTTAGCTCTGATGAAAGACTTCCTGTTTTCTGCAAAGTTTGCATTGAGCATTAAAGGGGAACTAATACTACCTTTTGGTTGATCAAAGACATATTTAGGTTACTTAAGTGTTACCATTTTATGAGTTCTGACATCTTTTTGTGCGCAAAGTATGTAAAGTTGCGATTGTCAAACCATATTCTTTGCAATATTTTGTTGCTGTACTGTATTCTTCTACCTGGCTCTTGGAGAGGTATATAATGTTAATTTTGGCTCAAAGTAGTACTGAATACTTACACTTAAGAAAGAAATACTAGTTACAAAATGATATACTAGTTTCTTGTGTCCACACCTATACGATCTGTTTGGCTTGCCACACTTTGGAATCTATCTTGTTCATTGGCATGTTTATTTGCAGGATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGTGTGAGTGGCTGTTAAAATGATGGCTTCTTATGAAAAAACATAAATGATTTCAGTATATATGATTAAAAAATAAATTGTCTTTATACTTAATGGGAAGTCGGCGAAGCTAATCAATCTTAATATCAAGTTGAGTTCTTTTAAATTCTCTTGAAGGTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAGGTTCGTTTTCCCATATTATTTGTTTGTTCTTTTGTTTTCTTTATATTTCTTGATATCACACTTCTCCTTTATGTGTCTGCACAATAAAAGTTGTACCTGGAGTTGTGTACTTCTAGCAAAGTTTTACTTGTTTTCAACTTCAGCTAGATGAATAGGATCGTTATTTGCATATTTTTTAAGGTCAAGGAGGTCTGACAATCTTTTTTTAGTCGTGAACCCATTTCACAAGTCCCTTCGACGTATTTTCTTTGTTCTATAGGATAAAACTTTTTTGTAATGTACATGCCCTTTCTAGTATAAGGTAGTAACAACTAAACATCAAAATTTGTTTTAAAAGGTAACAATCTTATTATCTTTATATTTACATATCACAAGAGCAAAGTATATCCTCATTCTTTCAAGGAATCTATTGTCTCTAACAGTGGATCCAGATCATCGGGAATTCTTCTTTACACCAAAAACGAAGTGAAATTTTTCTTGATTTTATGAATAGGGCTGTTTTTTAGGAGTAAGCATTAATATGCAATCCACCTAAAGTTTCTCGGCTCAAAGAGAGTGAGTTTGGTAAGTTTAATAATGGGTAAATCATATAACTGAGCTCGTCAAAGAGTCTCTATCTTTTCCTTCTCTTGGGTAAATTTCGAGAAGGAAAAGTTAGAGGGCAGCAAATAGTTCTTGTCCGTGTCTTATTTTCTTGGTTGGAAATATAATCAGAATACATTTGGTCTCTCAATGAAATCAGTAGTGTCTTTGACGAGCTTAGTTATAACTCCGAGATGCTTTATCATAGCTTCTGAAGTCGGTCTCACTAGTCACGACATTACTTAACTTTTCAAAGAAATTGGTCTCATGTCAAGTTGTTTGAGCTTATTTTATGTTTTCTTATTTTCTTTATCTGATTGATTTGATTCATTAAATGTATCCTTCCAAACAGATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTCAT</genome_strand>
        <mrna_strand>CTCTTCGCAATTTGTTCTTCAATTTTGCGGTCGAAGATTGGCGCAATTTCATCAACTAATTCAAT...................................................................................................................................................................................CGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGAGGAATTGATTTAGCTATTTTTACTCAAAGTTTGGATTTTTGAAGCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAGGAATGCGTCAAGTCTGAGGGAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTCTGTTGCAATATTGACAAGCACTACATATCTGCCTCGAAGAGTTCAATTTGTCGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAAAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTCTACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACACCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGT.........................................................................................................................................................GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG...............................................................................ATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588968" ref_strand="+" ref_description="SGN-U588968 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350832|emb|CAO40947.1| (e_value=1e-32) unnamed; (*ATH) AT1G24090.1 (e_value=3e-30)  Symbol: None | RNase H domain-containing protein, very low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profiles PF00075: RNase H, PF04134: Protein of unknown function, DUF393 | chr1:8520823-8524... ; ">
      <seq>tttgtttggaacaccagtaggagggaattgatttagccacttttacctcaaagtttggactttttgaagccaaaagggaagaagaatcaactgtaacaatgttgagtatgttagtattgatctggaattaagttttaccaggaatgcgtcaagtctgaggaaagtcccatgtaatgaattcttgtttcatgccatgttttgttgcaatattgaccaagcacctaccatatctgccttgaagagttcaatttgttgaagtctggtgatatcttggaggatgagcttttgcacatccttgaattagaaagtcgattttgacttgtttctggatagaattagcatctaacaagtgtagtggtgataattctcttttacggaagttttatcccgttccaataatgaaggaagacagagatggtttctttgttgttaagaaaggagatattgttggagtatacagaaacttgggtgactgccagactcaagtcggatcctcgatatgtgatcctccggttagtgtgtataaaggctactccatgccaaaggacacggaggaatatcttctatcttgtggacttaaaaatgcattatattctatcagagctgcagatctgactgaaagtctctttggggctctagtaccatgcccttttcagcatcaatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="84684" stop="80551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84384" g_stop="84257" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84256" i_stop="82949" i_length="1308">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82948" g_stop="82589" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="497" r_length="365" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82588" i_stop="81925" i_length="664">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81924" g_stop="81766" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="656" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80863" g_stop="80851" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="669" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U588968" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84384" e_stop="84257"/>
          <exon e_start="82948" e_stop="82589"/>
          <exon e_start="81924" e_stop="81766"/>
          <exon e_start="80863" e_stop="80851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGGAAATACAGTAGGA-GGAATTGATTTAGCTATTTTTA-CTCAAAGTTTGGA-TTTTTGAAG-CAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAGGTATTTTACTTTATTTTTCCATAGTAAGTGGCTCCATAGTAAATAATTTAGTAACTGTGACTGGCCTTCCTCGGGAGTTTAGTGTAAGGGGCTGTCCTTTTTTTGCATTCTTGCTTTGGTAATGTTTCTTTTGAATCGAGAGTAAACAACATATATGCCTCCCAAATACTAAGATAGGGGTTATGTTTGCGTAATCCTACCCTCCCCAAACTCACTTGTGGGATTACATAACGTTTGTTGTTGTTGTCGTCGTCGTTGTTGTTGTTTTTCTTATGCTGATCAACAATGAGGAGAGAAAGAATACTTTTCAATTTGTTTGTGACTCGGAGTTTAAGAAATTAATTTAGCCTTTTTACTCAAAGTTCGGATTTTTGAGGCAAAAAAAGAAGAAGAATCCAGTGCAACGTTCTTGAGTATCCAAGTTTTGAGCTGGAATTATGGTGTTTTGCTTTTTGTTCCACAATAAGTTGCTCCGAAGTAAATAATTTACGATGGGGTTGTAATAGACTCTTGTGATCAGCCCTTCTCTTGAGCTTTAGTGCACTAGGCTTCCCTCTTTGCATTCTTGCTTTGATAACGTTTCTTTTGAATAGAAGGTCTATGGGAAACTACATCTCTACCCCACAAAGGTGGGGGTAAAGTTTGCCTATATCCTACCCTCCCCATACTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTA-CAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATG-CATGTTTTGTTGCAATATTGA-CAAGCA-CTA-CATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCGGTAACTATTGGAGGAATTTATATCTGCATTTTTATTATATAATGTGTGTATGTACACATATATATGTCTATATGTATACAAAGCTAGATATATGTATGTATGTCTGTGGATTTATATGGTGTCAACTGTGACTTTTCTCACTTTTCCCCTTGGTGGCTTGAACTCCCAATCTATTAGTTGGCACTGGAGTGCTCTTGCCACTGGATAAACTTCACTTGTCAACTTGTAGTTAATATACATATAGCGGATGCTACACCACATTTATCTTATCTGTTCTTTTCCTCGTGAATTTATGCAGATATAGTTGCACTGCAAGAACTTCATAAAATAAGTTTGACCTTATTTATTTGCTACATCTTCATTTACATAGGTCGACAGGAAGCTGGTGCATAATTTATCTGCAGATTTCAGCATTTCCTTGATGCTTTCCTTGTATGAATAAAATTATTTTTCAAAAGGAATAACATTTATTACAGCTTCAACTTGGTTTTCTTAATCAATGATAAAGTTATAGAAGTGTAGGAATTTCTCTTACAGAATAGGGGTGGTAAAGGCAGTTCCGTTATCTGTGTCCATCAATGGTTATATACCAATGTGCATGAAATGGGAAATATATCAAACTTGCAGTGCTTTAATCGGTTCCCCCTGCCCCTTTCTTTGACAGATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTT</genome_strand>
        <mrna_strand>TTTGTTTGGAACACCAGTAGGAGGGAATTGATTTAGCCACTTTTACCTCAAAGTTTGGACTTTTTGAAGCCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACCAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCCATGTTTTGTTGCAATATTGACCAAGCACCTACCATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATCCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588967" ref_strand="+" ref_description="SGN-U588967 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctcacttgtgggataacagtgggtttgttgttattgttgatattctcaaccatgggaaaaaaaggaatactctttccgttttaatttgttttatctgatttcactttgacagtgttaaaaaatatagaagaccttttgaatcttacggtcataagctaaagatatgtagatgtaccaaaaatgcttttaaacttgtgattttggacatgtcacgtggaaggttagaattaaggagttgctaaaaaaggaacgaggcattctttttgaaatggactaaaagggaaagtaagataaacaaattgaaatggaggaagtatattgtttgaaaatagagcagaatatggactttttattggctgtgtttggtatcagtatgatgaaagtcattttccataataattgttttttctagtttctggttaccaaaaaaatgtttttcttcaaaagaggaaatgacttccctgataagaagtattttccgtacaactaaacttttagcgtcatgtttcttgatccaactaacacttgttaacacatgtttcatgttacaatatttggggaatttatgtatatacatgcatgcatggttcatttgagttaaaaaattaaagaaagcttttttgtgttttcttactttttagttttacaggaatgcgtcaagtctgaggaaagtcccatgtaatgaattcttgtttcatgcatgttttgttgcaatattgacnagcactacatatctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="83889" stop="82550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83589" g_stop="82850" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U588967" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83589" e_stop="82850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCT</genome_strand>
        <mrna_strand>CTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACNAGCACTACATATCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598255" ref_strand="+" ref_description="SGN-U598255 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctctctgaagatggatgattttgggaacaatatcatcaaaaatataataagaactcttattatggctccggtgtatactacagccggatattttgcatacagaactggacgctggttctataatgaagagatgaggagacttgatataataagctctaacgaggcgcgacgacggagagaacaaaggattaaagataaaccacctaaacggtttttttggttctggtgattgcttgtttttaataatataatgtaaaaccatcatgatttaaattcaaaaatttaattatatgtattcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="93625" stop="91093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93325" g_stop="93270" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93269" i_stop="93118" i_length="152">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93117" g_stop="93060" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="114" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93059" i_stop="92425" i_length="635">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92424" g_stop="92386" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="153" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92385" i_stop="91544" i_length="842">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91543" g_stop="91393" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="304" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U598255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93325" e_stop="93270"/>
          <exon e_start="93117" e_stop="93060"/>
          <exon e_start="92424" e_stop="92386"/>
          <exon e_start="91543" e_stop="91393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGAAGATGGATGATTTTGGGAACAATATCATCAAAAATATAATAAGAACTCGTAAGTTTTGATCTATTAATAATTTTTTTTGATGTATAAATATTATTATATGTTGATATATGTATTTTTTAAAAAATATTTAAACATTTACTTCTTTATAGTTTAAATTTTTATGTAAAAATTTTATTTTTTTCAATCGAATGTTATGACAGTTATTATGGCTCCGGTGTATACTACAGCCGGATATTTTGCATACAGAACTGGACGCTGGTACATTTCTTTTTTTTCTCTTATTTTTCTTCGTCGATCGTGAATTTTACTCATTATATTTGTAGTTTGTTGAGGATATAATTTAGATTTAAATTTTTTTTACTAATTTTCTTTTATTAATTTCCTCATATCATATTTTTTGATTTTATTGTCTTATATTAGACTATGGATTATTTATTTTTTACTTCTGTATTTACTTGATATATACTTTTATACTTTGAGCAGATGATTTATCGAAAATATCTATCTACCTTCTCAATACTGAAGTAAGACAACGTACACATAACCCTGTTCAGACTGCTCAGATTTCACTTAAAAAATTATTTTGAATATATTATTATTATTATTATTTAATTATTGTTATTATATGTTAATTTGAGCTTTATGTAATTATTATTTGTTTTATTGGTAAAATAATGATAAAAGTGACCTTATGTTAGGGAGTATAGGTTCAAAATTGCTCTATAAAAGAAATTTTAGTCCTCTAAGTTTATTACTATTAATAAATATTTTTAATACAAACTCTATTATATTTTTACAAAACCTGTGATTTTTTTTAATTAATATAAAATATAAAAACACCAAAAAGGTCCAGTCAAATCTTATTTTGTTGGTGCAATTTGTGTTAATGACAGGTTCTATAATGAAGAGATGAGGAGACTTGATATAATAAGGTACAATCCATCTAAAACTTATAAGTTATAATAATCATATAAACTCGTAAATTATTTATTTATTTTAAAAATACATATATTTTTGCTTGACATATAGATAATGTTCGTATCATGTGAAAAATCTATATTAAAAAATAATTCGTTATTATTATTATTGAATTATTAGACTTTTAGATCTTTATAAAATTACATTTCAATTTTCTGATCTTGCATCCATGTCCTTTTTAACTTTACTTCGATGGCGCAACGTAACTATTAAGTCACTCTATTTAGGATGAGATAATATTTGAAAGTTTTGTAAGGACATTTAAGTGTAATTATTTTTATAATAAAAGGGACATAAAAGTATGTGATTTGTTAATCTGATGAAATTTTTAATACTCTATTTATGAATTATAATTTGATCATTTGCTAATTAAAATCATAAGAGTTTGTAAAGTTTTGATAGTTTTCACTTTTTTCAAATTATAAGATTTTCATGATTACGAGGAAAAAAAACAACTTTTGATATTTATATTAATTTTAAATCATCTTGATTTACAAAAATCATAATTGAAATCATAGCCCAAACAGATTCAAAGAAAAAAAATTTCAAGTAGGAAAGTCGTTACAATTCTTTAGTGGACCCTATGCAACGAAAAATCAAAATAAATATCAAATATCAATGATTAAAGTTTACTCGGTAGAAGTTTAGATTTTAGAAGAACTAAATTGTGGTCCATTATAATTCCTTTAAAATATGTTAGGATGACTTTGCACTTGCATTTTGTTTCTAACATTTATATCCATTATATCTTTTTCTTTTACTTACTTCGTTGTTGTTGTTATTGTTATTTTTATAGCTCTAACGAGGCGCGACGACGGAGAGAACAAAGGATTAAAGATAAACCACCTAAACGGTTTTTTTGGTTCTGGTGATTGCTTGTTTTTAATAATATAATGTAAAACCATCATGATTTAAATTCAAAAATTTAATTATATGTATTCAAGTTT</genome_strand>
        <mrna_strand>CTCTCTGAAGATGGATGATTTTGGGAACAATATCATCAAAAATATAATAAGAACTC........................................................................................................................................................TTATTATGGCTCCGGTGTATACTACAGCCGGATATTTTGCATACAGAACTGGACGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATAATGAAGAGATGAGGAGACTTGATATAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTAACGAGGCGCGACGACGGAGAGAACAAAGGATTAAAGATAAACCACCTAAACGGTTTTTTTGGTTCTGGTGATTGCTTGTTTTTAATAATATAATGTAAAACCATCATGATTTAAATTCAAAAATTTAATTATATGTATTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569330" ref_strand="+" ref_description="SGN-U569330 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|118480977|gb|ABK92442.1| (e_value=2e-156) unknown; (*ATH) AT1G70330.1 (e_value=3e-148)  Symbol: None | equilibrative nucleoside transporter family protein, contains similarity to SWISS-PROT:Q14542 equilibrative nucleoside transporter 2 (Equilibrative nitrobenzylmercaptopurine riboside-insensitive nucleoside transporter, Equilibrative N... ; (*SWP) sp|A1L272|S29A4_DANRE (e_value=4e-37) Equilibrative nucleoside transporter 4 OS=Danio rerio GN=slc29a4; ">
      <seq>cggcgatgggtgcaaccaccgtgaacggcggcgattcagaatcgacatcactgttaactccttcaaatcctaaaattccgaaggacagtttccacatagcttacataatctactttactctcggtgccggttatctactcccatggaacgcattcatcaccgccgtcgattacttcagttacctttacccggacgttatggtagatcgtatctttgccattgtttacatgatcgtcggattgatcggtttgcttttcattgttgctttttctaataagactagtgcttttgttaggattaatgttggaatgtttttatttgtggttgcgcttgttacggtgccgttgatggatgtgttttatgtggatgggagagttggagtgtatgccggttttggtgttactgttggtttggttggaatttgtggaattgctgatgcgttggttcagggtggagttgttggagctgccggtgagttgccggaacggtatatgcaggccactttcgccggaactgctgcttctggtgtacttgtttcgttgctaagaattttaaccaaagctgtatatccacaagatgctaatgggctgagaaagagtgcaaacctttattttattttcagcattgctgtgatgattctgtgcatagtcttttacaatattgcacataggcttccaataattaagtactacaatgatcttaaaactcaggcagtgaacgaggagaaagaggataagggcgacttaactccagaattatggagatcaactctggacatttttgggactgtgaaatggtatggttttggcattgtcagtctttatgtggtcaccttgtctatatttcccggatatatcacagaagacgtgcattctcaacttctgaaggattggtatccgatcttgttgattactggctacaatgtgtttgatctggtggggaagtctctgactcctgtattattttttgatgatgccaaggttgctattggtgcctgcttcgcaaggttgttgtttttgcctctattctacgtttgcttacatgggcctgaattctttaggacggagcttcctgtcacaatactaacctgtttactgggattgactaacggctacctgactagtttgttaatgatcttgggtccaaaaactgtccaactgcaacacgcagagatagctgggaccttactcgttttgttcttggtgatgggtctggcaattggttccgttgtatcatggttctggattatatagtttctcagcagcttgtaagatatccgttccccgtaaaacctattgctactcaaaaactgtgaaaacttatttattcatgccatttcaaatgtttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98023" stop="102631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98323" g_stop="98847" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101506" g_stop="102331" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="1351" r_length="826" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U569330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98323" e_stop="98847"/>
          <exon e_start="101506" e_stop="102331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATGGGTGCAACCACCGTGAACGGCGGCGATTCAGAATCGACATCACTGTTAACTCCTTCAAATCCTAAAATTCCGAAGGACAGTTTCCACATAGCTTACATAATCTACTTTACTCTCGGTGCCGGTTATCTACTCCCATGGAACGCATTCATCACCGCCGTCGATTACTTCAGTTACCTTTACCCGGACGTTATGGTAGATCGTATCTTTGCCATTGTTTACATGATCGTCGGATTGATCGGTTTGCTTTTCATTGTTGCTTTTTCTAATAAGACTAGTGCTTTTGTTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGCCGGTTTTGGTGTTACTGTTGGTTTGGTTGGAATTTGTGGAATTGCTGATGCGTTGGTTCAGGGTGGAGTTGTTGGAGCTGCCGGTGAGTTGCCGGAACGGTATATGCAGGCCACTTTCGCCGGAACTGCTGCTTCTGGTATTGAAAGTTCCTCATTTTGCGCTTTGATTTTCAGTATTTGACCTAGAATGTCGCTTTTCTGTGGTTAATTTGAGTCTGATGTTGATGATAATAGGATCTGATCTATGTGTTGAAATGCACTTGACCTGAAATGACTGATGATTCATATAGTGATCTAAGTTATTGGAATGAAATTGGCCTGAATTGATTGATGATTCATATAGTGATCTAAGTTTTTATATTTTAGAATTGAGGTTTGGTTGATATGAAAGTTATAGTTGATGCAACTCAATTTCATGTTTTGGTATGAAGGCTTAGTTGATATTAAAGTTATAGTTGATGCAACTCAATTTCATCTAGAACGTTTATTACTCTAGGTTGCTTCATTTGCTTTGTGTCTTGCTATTTTGCTGTCATATTTTTCTTGCAACATGTTCTGTATATTTATCATTTGAGACGAGGGTCTATTGGTAGCAATCTTTGGATTAAGGTTTATGTATACCCTACACTCCTCATACCAAACTTGTGGGATTACACTGGGTATGTTGTTTGTTCATATAAGAACTGCAGTAGATATTACCATTTTCAAAAAAAAAAATTTAGAGCTGCACTAGATATTCAAACAGCTGTTCAGGGGAAGTATCTGCGTATGAGTCAATGCGGTGGCTTCACTGGTTTTGCTAATTAACTTTGTTTCCTCATCTGTTTAGAATTTGGGGAACTTCAACATCTTCTTCTCCTGGAATGTTTCTATCTGCTTTAACTGTCGCAACTTGTATTTCTAATTGTCCATCCTGTTACCTTGTCTTGCGGATAATCTCTATTCACTCATTTACTAATGGAATAGGATAATTCAATTGAATGAAATCTCATCGTCCCATATTATCATTACCATAGATTGAGATTTAGTTAAATCTGTAATGTAGCTTATGAAGTGTTCTATCAAGGCATTATGTAGTCTGTCTCAATGATCTGATTCCATTTGTTCGTCAATGTGGTTGATATAGATTGAATTCTTTTCACGACTTTATAAAGGAAAAGTTGCTTTAACTATTTAGTTTTTGAATATATTGCTGCTCTTCATGATGGAAGATAGTATGTAATGGAACAAAACATAATGCTAACTATTATTCTGAAAATATTATTTCTTGTTGGGCACCTCTGTGCTCCTTCCTGTAGCGATGTCACATGGGATGATATTGCATGTAATGTCTTTTGAGTTCCAATATCAAATTTTTAGTATTAAAAGAGAGAACATTTTACTATTGGCTATGAAGAACATGCAAGATTTTCCTTATGTAGGTGCTTAAGTACTCTAGATTAAGGAGGTTTGGATTACTAGAAATAAGGTAGGTTTTTGGATTACTGAAAAGTCATTAAATAGAAGTTACTTACATTATAACAAAATAGGAATAATCTATAGTATTAATATAAGCACATATGATGAATCTCGAGCATTCTAACGCATAACTGCACTAATTCTCTTGACTTTCAATGTGCTCCTTATCACAATCAAGCTACTGAAGCAATATGATTTTACAAATCAATAAACTGGTAATCAAATCAAGTAAGCCAAAAGAAGTTACTGTTGATGACATGGCAGTTAATGTGATGATGGGACAATGATACAACAGTTGATTGGGGTGGTGTGTGACAAACTGTCAAGATAGTGAGATGGCAGTGATTTGATGGTGATGTGTTGTTGGATGATGATGTAGAGCAAACTGGATAGTGATAGATCATTGGACATTGATATAGTACTGAATGGATAGTGTTGCTACATGACGACAGAAAAATGACTTGACATACAAACCGTTAACTTGATTAGCAAACATGTATATACTGCTGAATTGACAGGTTTGTTTGGAGCACCAATTTGATAGGTCAATTGACACAGACTATCAGATAAATCTCTTGAGAAAGATGAGCTGTGATGTCAAAGACAGGTTGAAATAGTAGCTGGAATAGTGGACGATGGTGTCGAACGGTCATCAGGAAAGAAGAGTGTTCACACTTGAACGATCAAAAGAAAGATGCCAGCCTGGTAAAATTATGAGGGCAAAAAAAGAAATATTTGAAGTGCATGCGGCATAAGGCTTCCCACCACTAAACTACTAGGTTTTTAACAAGAGATGCTGATACCATGTGAAATAGAGAAAATAAGCAAAAATATTCTATTGCAATTTGGTTATAGGCAATATACAGGAAGCTCCTTGTATAGAAGTTTAGGCTATAGAGAAAAAAGGTAAGTGGAAACAATAGGATATAGAAGTTTAGGCTAATAGAGAAGAAGGTAAGTGGTAACTATAGGAATTAATGGAAATAAGTATAATGGAGAGATATCTAAATAACGAGATTCCTAATTATAACAGTAGAAAGAAGAGTATGGCATTCCATGCAGCCTAGTGTGGCAGTGCATTGGCCTTTCCCTAGACATGTCACTGGGCTTTGGTCTTGTACTTGACACCCCAAGAAACTTCTAGTTGTGACATATTGTCATTTTCTGTGCTATTAACCTTAAGTCATTAGGATGAATCTATAAAAGAACTTTTTAATTATAACTGCTCCAAATCTATTGGCTTTTAACATTTATTCTCCCTTTCTTTTTTGTCCAATCAGCACATTAAGATCAGAAAGTTGGGATAACCATCTTAAGACTCTTCTTCTATGTTGCAGGTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGACTAACGGCTACCTGACTAGTTTGTTAATGATCTTGGGTCCAAAAACTGTCCAACTGCAACACGCAGAGATAGCTGGGACCTTACTCGTTTTGTTCTTGGTGATGGGTCTGGCAATTGGTTCCGTTGTATCATGGTTCTGGATTATATAGTTTCTCAGCAGCTTGTAAGATATCCGTTCCCCGTAAAACCTATTGCTACTCAAAAACTGTGAAAACTTATTTATTCATGCCATTTCAAATGTTTATTT</genome_strand>
        <mrna_strand>CGGCGATGGGTGCAACCACCGTGAACGGCGGCGATTCAGAATCGACATCACTGTTAACTCCTTCAAATCCTAAAATTCCGAAGGACAGTTTCCACATAGCTTACATAATCTACTTTACTCTCGGTGCCGGTTATCTACTCCCATGGAACGCATTCATCACCGCCGTCGATTACTTCAGTTACCTTTACCCGGACGTTATGGTAGATCGTATCTTTGCCATTGTTTACATGATCGTCGGATTGATCGGTTTGCTTTTCATTGTTGCTTTTTCTAATAAGACTAGTGCTTTTGTTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGCCGGTTTTGGTGTTACTGTTGGTTTGGTTGGAATTTGTGGAATTGCTGATGCGTTGGTTCAGGGTGGAGTTGTTGGAGCTGCCGGTGAGTTGCCGGAACGGTATATGCAGGCCACTTTCGCCGGAACTGCTGCTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGACTAACGGCTACCTGACTAGTTTGTTAATGATCTTGGGTCCAAAAACTGTCCAACTGCAACACGCAGAGATAGCTGGGACCTTACTCGTTTTGTTCTTGGTGATGGGTCTGGCAATTGGTTCCGTTGTATCATGGTTCTGGATTATATAGTTTCTCAGCAGCTTGTAAGATATCCGTTCCCCGTAAAACCTATTGCTACTCAAAAACTGTGAAAACTTATTTATTCATGCCATTTCAAATGTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563024" ref_strand="+" ref_description="SGN-U563024 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gaataactgcaaaaacaactgagatgattataatagacttggttgctgaagcagctagaatacgaggatcttccagtaacgatggttcccggggtttgaaggtaaacgaagaatcctccattgaatctcaagtaagcgatattcgtgatattaaagaaaggtgggccttaagaagaagaacatcaaggcatcatcgaagatcatcttcgattgccaagtaattgttgagagtacattccttgttgtatcatatgtactctctattaaagtgtgatatacttttcttttcaatctgttccaaaaagaatatcgtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="103236" stop="102320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102936" g_stop="102620" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U563024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102936" e_stop="102620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCA</genome_strand>
        <mrna_strand>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566585" ref_strand="+" ref_description="SGN-U566585 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157358424|emb|CAO66084.1| (e_value=3e-54) unnamed; (*ATH) AT1G70480.1 (e_value=1e-54) | Symbol: None | expressed protein, contains Pfam profile PF02713: Domain of unknown function DUF220 | chr1:26565566-26567472 FORWARD | Aliases: F24J13.5, F24J13_5; ">
      <seq>gcgtaaaatgaacttcttcatataacaaactcaaaaaacggaacgccactcaaattaacaatcaaaatgcacaaattctcagcaatttctcaacttgttaagctttggatttgaagtattttttaggttctgattagttcaatgaagacggagggtcagggaatagaaatactggagaacacgagcaatgtacataatagattgcctcgtccaatgatccagtctattttctcaggattccaggaaaaggtccaagagtgtgttaagtcaaatttcaaaagattgaaaatcgctcatgataaatcaatcacgagaggtaataacaaaggagcaactttagtcatagatgtggataaagagaagcaattacaatcttggaaagagaacccgagttgggttgatcccccgccatatgtaaaggtaagtgtacccaaaggttctctttgtaacctgaatgtgaaagttaatattggactccccccagataccgtgtttgacattgtaaccgaccctgaaaatagacgagtcttcaagaatatcaaggaagtattatcgcggaaggtgttggttgatgaaggttcaaggcaagtagtggaactagaccaagccgctatatggaaatttctttggtggtcaggaaaaatatctggtcatgtattagtcgaccaaaacagagaagactacacgatgaagttcaagcaagtgaaaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="107496" stop="102839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107197" g_stop="107072" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107071" i_stop="105499" i_length="1573">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105498" g_stop="105358" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="267" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105271" g_stop="105119" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="420" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104693" g_stop="104571" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="543" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104570" i_stop="104410" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104409" g_stop="104266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="687" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104265" i_stop="103166" i_length="1100">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103165" g_stop="103139" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="714" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U566585" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107197" e_stop="107072"/>
          <exon e_start="105498" e_stop="105358"/>
          <exon e_start="105271" e_stop="105119"/>
          <exon e_start="104693" e_stop="104571"/>
          <exon e_start="104409" e_stop="104266"/>
          <exon e_start="103165" e_stop="103139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTAAAATGAACTTCTTCATATAACAAACTCAAAAAACGGAACGCCACTCAAATTAACAATCAAAATGCACAAATTCTCAGCAATTTCTCAACTTGTTAAGCTTTGGATTTGAAGTATTTTTTAGGTAAATCTGTTCTTCCTATCCCTTTTGTTGATATTTTGAGCTCCTAATTACCTGTTTTGTTGCTTGTAATTTGTACTCAAAATTAGCGATCTGAATTCATAATCCAGGTGATTTGTTGCTGGATGTTTGATTTACTATCTAAATTTTTTAGTTTCAGCTCAAGCTATTAGTGGATCCAATTTTTTCTCATTTTTATTTTGAATTTTTGTGGTTACTGTAGTTCATTTTGATGAAATTTCATGTATTGATCTGAATTCAAATAGGTTTAACGGTGTTTCTGTGCTGTTGGAATAGCGTGTTTGGCCAAACTTTTAGAAAGCTGAGAAGTGTAGTTATTTTGGAGAATTGATGTGTTTAATCAAACTTTTTGAAGAAGAAAAAGTGTTTTTAAGTTGTAGCGGAAACTGATTTTTTAGGAATTTTTCTTAAGAAAGTTGAGGTGTTTGGCCAAACTTCTAGGAAGCCAATGTGTTTTTATAAATATTAGGTAAAAATTGCTTATTTTAGAGAATTCAAGTAAGTAGTAGAAACTGCTCTTTAGAGAAAAAAATGTGTTTGGCCAATGGATTTGGCCAAATTTTAGAGAAAAAAGAAGTGTTTTTAAGTAGCAGAACTGCTTTCTAAGAGTTTTGTTTTTTGAAGTAAGTTGAGGTGTTTGGCCAAACTTCTGGTAAGCCAAAAAGTGTTTCTGAGTAGCAACATAAGCTGTTTTTTTCAAGAGTTTGCTTTAGAAATTTGAGTTGTTTGGCCAAAGTTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGAGTACGTTATAACTTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTCAATATGGAATACAACAGTATTCATATAGCCGACCCCAACTTGTTTGGGTCTGAGGGGGTTATTGTATGGAATACAAATTTTATCCGTTTGCTCTGTTTTAGAAAGTGTTGATTCCAAAAGCTTTGGTTTTTCCAACTCCAAAATGGAAATAAGGAATCTGTGAAAGAATGCATCTCTTTGATATGGTAAATCTGTCTCAAGATTGAGTACGTTATAACCTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTTCAATATGGAATACAACTTTAATGGAAAAAACAGGATTCATATAGCCGACCCCAACTTGTTTGGTACTGAGGGTGTTATTGTATGGAATACCGCTTCCTCTGTTTTAGAAAGTGTTGATTCCAACGTTTGAGTTTTTCCAACTCCAGAATGGAACTCAGAAGTTTGTGGAAGAATGTTTCTTGTGTCAATGTGGTGCATCTGTCGAGATTGAGTACAATATAAACGTGTTTCCTTCTTTTGGAAATTTCGTGGTTTGATATTTATTTCAATCCCATAAGCATTCTGTTGCATATGATGATACACAAATGTTGGATAAACTAATATTGCAATTATGTAGGTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAGGTTTGTTCCTCCCTCTTCAATATGTTTTTTGACGTATATATGATCTATATATATTCTTTTTCTCCAAATTTTCTTCGTTGCTGCAGTCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAGGTAATACAGTTGTGAAATTATTTGTAGGATGTAAACTTCCTATCGCCAAACTTTACAGTAAATGGACTGCTGAAGCTATTTCCTCATAGCACTTAATCAGGATATAACCTCCTAGTTCCCTGTGCTATATCTAAAAAGGATGATTTCAACGTTATGTTGATTAGTGCATGTTGCTCTTGTGCACGAGCCTTGTTTATCTTCTCTTGATAAACTTTTTTCAGATATTCCGAAGGGTACTTGTTCAGTTTTACCAAACAAGGAAGTAAGGAGGATCATAACAGATCGATTTTTTCAAAGTTCATGTTTTTTTTTTTTTTTGAGGAGTCAGATGTGACCATCGCATGTGTTGTACTTACTAGAGCTTAGTTATGTTGTTTGATTTTGTTATGAGACTTTATGACTTGGTGAGCTTTAAATCCTTGCAGGTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAGGTAAGATATCTCATGACTATGTTAAAATACCTTGTCTCATCACAATCTTTTCAACAGAAGGTGTAAAATTTCTTTCTGTTTATACCTCATATGTTACGCCCTTTTTTTTATTTGCCTTTTCACTTCTAAATATGATCTGAAGTTTCTGCATATAATTTCAGGAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTGGTCAGGAACAATATCTGTTCATGTATTAGTCGACCAAAACAGAGAAGACTACACGGTAATGACTAACCAGATCACTGATTTATTGCTGGTTTTTTACATGTTAGACTACACCAACACTGCCTGTTTCTTATGTTGCATCGTGAATTCGAAGAATAGTATTTGAACTTTGAGTAGTACAGTAAATTTCTGCATTAAGTTTTGATGCTGAAAATAATATTAGGTCTGTGAGCATCATATTTACCTATCTGTTGGACCAACCTGGCAGCTTGCATAAGTGACTACGTGAATTGGAACCATTTGTCTCATCTTGATATATAGTGAACTAGTGTCATCAAAGGCGCGCTTAAGTCCCGAAGCGATGCTCAAAACGTGTTGAGCGCTTCAACCTCACTTTATCTGCGCTTCATTATTGTCATCATGGTTCTAAGGCAAACTTTTTTTTCCTTGCCAATGAGCCTCTTACGAAGAAATGACACTAAACAATTGATATTTCACTTAATCAAAATTTTTAATCAATTTCTTTGGTCATATATTTGTCATTCATATTTATAATTATAGTCTTGAACTAAACATATACATTTGTATTTTTTTTCTCCCTTTGTGCCTCTTTTCATACAAGTCCATATTTTATTTGTGCTTAAAGTCCCCACGAACCTTAGAGCTTTTTTGCATTTTTCGCCTTTGATAACACTGTAACGAACCTATATCCTTGTGCAGCACGAAATTGCTAACTCTTGTATACCAAGGCTTTTGAGGCTTACACCTTCCTATTATTAGACCTAAAAAAAGGCTTTCAGTAGCGTCTTTAGAAGCTAAGCCTTTTGAAACGCTAGTAGTTGTAGCTGTGGCTGTGACCACACCAATCCCGAGTCTACAAGTGATTTGTAAGTAGATTTGAGCCTTTGACTATAAATGCAAGCATAGTTACAGACTGAAAGAAGTGTTGTGGACCGATGCTTTTAGACGAAAGAACTTCTTTGTGCCTCTGAAGATTTGAGCTTTGCGTTTAAGTGCTTCTTTCAAGCAACATCACGGTTCACCATACTTCAGAGTGATCCCAGTTTTTTTACGCGTATATAGCTTCTGTAAACATCAAATGTACCTTATTGTAGCTCTCCTACATACTCTTGACTTGTTTTTTTACGTTGTGTTTAGATGAAGTTCAAGCAAGTGAAAACTGGA</genome_strand>
        <mrna_strand>GCGTAAAATGAACTTCTTCATATAACAAACTCAAAAAACGGAACGCCACTCAAATTAACAATCAAAATGCACAAATTCTCAGCAATTTCTCAACTTGTTAAGCTTTGGATTTGAAGTATTTTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG......................................................................................TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAG.................................................................................................................................................................GAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTGGTCAGGAAAAATATCTGGTCATGTATTAGTCGACCAAAACAGAGAAGACTACACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTTCAAGCAAGTGAAAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566584" ref_strand="+" ref_description="SGN-U566584 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157358424|emb|CAO66084.1| (e_value=7e-27) unnamed; (*ATH) AT1G70480.1 (e_value=1e-27) | Symbol: None | expressed protein, contains Pfam profile PF02713: Domain of unknown function DUF220 | chr1:26565566-26567472 FORWARD | Aliases: F24J13.5, F24J13_5; ">
      <seq>agtagcaacataagctgtttttttcaagagtttgctttagaaatttgagttgtttggccaaagttttagtttgctcgcggcgttatttgacagagaccagaaagttggctctctttactttaagagcatgttgattccaaaagattttgtttttccaacttcaaaatcgaaagaaggaatccgtgaaagactgcatctcctgttgatatggtgaatttgtctcaagattgagttctgattagttcaatgaagacggagggtcagggaatagaaatactggagaacacgagcaatgtacataatagattgcctcgtccaatgatccagtctattttctcaggattccaggaaaaggtccaagagtgtgttaagtcaaatttcaaaagattgaaaatcgctcatgataaatcaatcacgagaggtaataacaaaggagcaactttagtcatagatgtggataaagagaagcaattacaatcttggaaagagaacccgagttgggttgatcccccgccatatgtaaaggtaagtgtacccaaaggttctctttgtaacctgaatgtgaaagttaatattgnactccccccagataccgtgtttgacattgtaaccgaccctgaaaatagacnagtcttcaagaatatcnagggnagtattatcgcgganggngttggttgatgaannttcanggcangtagtgaactagaccaagccgctatatggaanttnctttggng</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="106680" stop="104021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106380" g_stop="106150" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106149" i_stop="105499" i_length="651">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105498" g_stop="105358" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="372" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105271" g_stop="105119" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="525" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104693" g_stop="104571" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="648" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104570" i_stop="104410" i_length="161">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104409" g_stop="104321" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="737" r_length="89" r_score="0.854"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U566584" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106380" e_stop="106150"/>
          <exon e_start="105498" e_stop="105358"/>
          <exon e_start="105271" e_stop="105119"/>
          <exon e_start="104693" e_stop="104571"/>
          <exon e_start="104409" e_stop="104321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGCAACATAAGCTGTTTTTTTCAAGAGTTTGCTTTAGAAATTTGAGTTGTTTGGCCAAAGTTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGAGTACGTTATAACTTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTCAATATGGAATACAACAGTATTCATATAGCCGACCCCAACTTGTTTGGGTCTGAGGGGGTTATTGTATGGAATACAAATTTTATCCGTTTGCTCTGTTTTAGAAAGTGTTGATTCCAAAAGCTTTGGTTTTTCCAACTCCAAAATGGAAATAAGGAATCTGTGAAAGAATGCATCTCTTTGATATGGTAAATCTGTCTCAAGATTGAGTACGTTATAACCTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTTCAATATGGAATACAACTTTAATGGAAAAAACAGGATTCATATAGCCGACCCCAACTTGTTTGGTACTGAGGGTGTTATTGTATGGAATACCGCTTCCTCTGTTTTAGAAAGTGTTGATTCCAACGTTTGAGTTTTTCCAACTCCAGAATGGAACTCAGAAGTTTGTGGAAGAATGTTTCTTGTGTCAATGTGGTGCATCTGTCGAGATTGAGTACAATATAAACGTGTTTCCTTCTTTTGGAAATTTCGTGGTTTGATATTTATTTCAATCCCATAAGCATTCTGTTGCATATGATGATACACAAATGTTGGATAAACTAATATTGCAATTATGTAGGTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAGGTTTGTTCCTCCCTCTTCAATATGTTTTTTGACGTATATATGATCTATATATATTCTTTTTCTCCAAATTTTCTTCGTTGCTGCAGTCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAGGTAATACAGTTGTGAAATTATTTGTAGGATGTAAACTTCCTATCGCCAAACTTTACAGTAAATGGACTGCTGAAGCTATTTCCTCATAGCACTTAATCAGGATATAACCTCCTAGTTCCCTGTGCTATATCTAAAAAGGATGATTTCAACGTTATGTTGATTAGTGCATGTTGCTCTTGTGCACGAGCCTTGTTTATCTTCTCTTGATAAACTTTTTTCAGATATTCCGAAGGGTACTTGTTCAGTTTTACCAAACAAGGAAGTAAGGAGGATCATAACAGATCGATTTTTTCAAAGTTCATGTTTTTTTTTTTTTTTGAGGAGTCAGATGTGACCATCGCATGTGTTGTACTTACTAGAGCTTAGTTATGTTGTTTGATTTTGTTATGAGACTTTATGACTTGGTGAGCTTTAAATCCTTGCAGGTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAGGTAAGATATCTCATGACTATGTTAAAATACCTTGTCTCATCACAATCTTTTCAACAGAAGGTGTAAAATTTCTTTCTGTTTATACCTCATATGTTACGCCCTTTTTTTTATTTGCCTTTTCACTTCTAAATATGATCTGAAGTTTCTGCATATAATTTCAG-GAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTG</genome_strand>
        <mrna_strand>AGTAGCAACATAAGCTGTTTTTTTCAAGAGTTTGCTTTAGAAATTTGAGTTGTTTGGCCAAAGTTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG......................................................................................TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGNACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACNAGTCTTCAAGAATATCNAG.................................................................................................................................................................GGNAGTATTATCGCGGANGGNGTTGGTTGATGAANNTTCANGGCANGTAGT-GAACTAGACCAAGCCGCTATATGGAANTTNCTTTGGNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577562" ref_strand="+" ref_description="SGN-U577562 Tomato 200607#2 [111 ESTs aligned] (*GB) gi|217074208|gb|ACJ85464.1| (e_value=9e-99) unknown; (*ATH) AT3G62290.1 (e_value=3e-99)  Symbol: None | Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role i... ; (*SWP) sp|P51823|ARF2_ORYSJ (e_value=2e-99) ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF; ">
      <seq>cgcgttattctcaagctctctctctctctctctctctctcaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttaaaatgcatatcaaataccataatataaaaactactgtggcattaaaaatttaaagatttataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112755" stop="108095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112455" g_stop="112364" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="262" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="333" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="453" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="572" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="654" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108396" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="960" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U577562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>960</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112455" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTTATTCTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTC</genome_strand>
        <mrna_strand>CGCGTTATTCTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGCATTAAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590844" ref_strand="+" ref_description="SGN-U590844 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|217074208|gb|ACJ85464.1| (e_value=6e-89) unknown; (*ATH) AT3G62290.1 (e_value=2e-89)  Symbol: None | Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role i... ; (*SWP) sp|P51823|ARF2_ORYSJ (e_value=1e-89) ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF; ">
      <seq>gctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112711" stop="108149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112412" g_stop="112364" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111533" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111532" i_stop="111382" i_length="151">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.190" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111381" g_stop="111370" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="180" r_length="11" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111369" i_stop="110505" i_length="865">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="251" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="371" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="490" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="572" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108701" g_stop="108449" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="825" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U590844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112412" e_stop="112364"/>
          <exon e_start="111652" e_stop="111533"/>
          <exon e_start="111381" e_stop="111370"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTT</genome_strand>
        <mrna_strand>GCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCAT.......................................................................................................................................................-TCCAACTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569201" ref_strand="+" ref_description="SGN-U569201 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gaagatgaacctattgcttcttaaaacagaaaaaaaagaaaatggggataggggaagtggaaaaggggggagggggttacaaggtggggaatcaacccttgccagtcaccaacaatgtgaaagtttaggtacctaaccaactgagctactcagttgcccaaaagaaagactaacctatcttcttatcaaaaaaaaaaaaagagacttaacctatcattttgataaggagacagaaaaggtgcatagaactagtactataactgtccctctacttttactgtttgctgcaattgattagtttgttataacttagtcatccttcgttgtctcagttctttctgtcaatccagggaaagcaatgtttaatcaggggcatgcggtccttaatcaaaataattattttgaacttttaaatatgttatctttgatgcaaatgtaaaggctcctaaaaagaagcttagattatcagtgttgtagaaatacctgtgtttgagacagctatgtccttttggatcactcatgaatatcatttttaagaatattgactaagactacattttctggtgaaataacacaaacacaaatcccccccccccccaccttttgcacaggtaagagtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111684" stop="110462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111385" g_stop="110762" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U569201" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111385" e_stop="110762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAAC</genome_strand>
        <mrna_strand>GAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585142" ref_strand="+" ref_description="SGN-U585142 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|161958660|dbj|BAF95169.1| (e_value=6e-77) putative; (*ATH) AT1G70520.1 (e_value=4e-60) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr1:26588441-26591082 REVERSE | Aliases: F24J13.9, F24J13_9; (*SWP) sp|Q9CAL3|CRK2_ARATH (e_value=3e-59) Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2; ">
      <seq>ggactcaaagctccgtgcaaagattgctgattttgggttggccaggtcattccaagaagacaaaagtcacataagcactgccattgctggcacattaggatatatggctccagaatacttggcacatggtcaattgacagaaaaagcagatgtttacagctttggagttcttctaatggaaattgttactggaaggcaaaataacaggagcataaatgatgaaaatacagaaagcttagtttccattgtgtgggattactatcaacgcggtatagtggaggaactattcgatccgagtctcatgttgcacaactacaacaccatcaatgtgaaaaatgagatcgcgagagttttacatgtggggcttttgtgcactcaagagatccaaacagtacgtccatccatgtctaaggcattacggatgatcctcgagaaagaagaagagctgccggcacctactaatccaccatttgttgacgagaacaccatggaacttcatggtccttgggagaagtattcgcttagtcaaggtgattctagttcaattgccaacttatctcatagttcattttaccccagatgatgatatttcaaagccctgaaactgatgctaacgattataagcatcatttcgcctcgtgctcttgacgatcatagtaatcgagcagttagttataacaacaattgtgtatcagttccaaacaaaagttggggtcggctatctgaattctcgattctacttaagctttgttagcacaggagtatgattgtataggatctccttcattggaaaaggattgtaacgtagtatgtataaatagggctcagtgtaataacatagtttatttgtcttaatgatattctttgagtggttatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="115251" stop="113602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114951" g_stop="114856" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114855" i_stop="114773" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114772" g_stop="114622" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="247" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114536" g_stop="113902" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="882" r_length="635" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-U585142" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114951" e_stop="114856"/>
          <exon e_start="114772" e_stop="114622"/>
          <exon e_start="114536" e_stop="113902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCAAAGCTCCGTGCAAAGATTGCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATTGTTAGTATTTCTTCATCTTGTCTTCTACTTTTTTCGCGTAAAAGTACACACAAACTTGAAAACTAATATGGTCTGATATGCAGAGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATTGTAATCACCATTTACCAAAGTTTTCAATCTTGAAGAACCTTTTTGCATATTTTTGTTTAACTCTTATATTGGATGAACTTAACAGGTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCT</genome_strand>
        <mrna_strand>GGACTCAAAGCTCCGTGCAAAGATTGCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATT...................................................................................AGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT.....................................................................................GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGGTTATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596142" ref_strand="+" ref_description="SGN-U596142 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157329819|emb|CAO42648.1| (e_value=1e-68) unnamed; (*ATH) AT1G10740.1 (e_value=5e-67) | Symbol: None | expressed protein | chr1:3568171-3570761 REVERSE | Aliases: T16B5.12, T16B5_12; ">
      <seq>gtttatgagtggctcgacattccttggatgaaggactattacaactttgggtttgatcacttcagtatgacctggaggaaagttggtatccggggtcttcttgattaccttttagggaatgctggtccatttgatttaggggactggatacttcctgatcttaccatccaggggtgaattaagttgaacagacacttgcattcatttccgcaaacatactacttcagctatgctaccaagcatcctacaaaagttatgggttctgcagttccttctggtatttgagggatacatgctctgctattcattatagtcctgcaaatgagccaatggcggcatcctcaacatgtttctcctccgtataagggctatagggatgaagattggtgggacaatgacggtgctctcaacaccatatctatgacacatactcgtttgtcggttgaacaccctacttgcctcgtaattaaagactctgattgccacccgaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="147794" stop="149366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148094" g_stop="148467" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148468" i_stop="148944" i_length="477">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148945" g_stop="149066" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="496" r_length="122" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U596142" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148094" e_stop="148467"/>
          <exon e_start="148945" e_stop="149066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGAGTGGCTCGACATTCCTTGGATGAAGGACTATTACAACTTTGGGTTTGATCACTTCAGTATGACCTGGAGGAAAGTTGGTATCCGGGGTCTTCTTGATTACCTTTTAGGGAATGCTGGTCCATTTGCTTCAGGGGACTGGATACTTCCTGATCTTACCATCCAGGGGTCAATCAAGTTGAACAGACACTTGCATACATTTCCGCAAACATACTACTTCAGCTATGCTACCAAGCATCCCACAAAAGTTATGGGTTTTGCAGTTCCTTCTGGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAGGTTCGTGTCTATTACTCCTCCTTTACCAATCTACTTAGATAGATGACGATACATTATAGTACAAGCCCTATTCACTTGAGTTTTAATTAGTCAGCAAGATTTTGTAACTCCATTGATGAAAATTTTCTGAAGCATTGAGACTCGTTATTGCGTGACTGTATGTTATGCCTTGCTGCTTTGCTGATCCTTAACCCATCGGGCTATATTCTCATGACAAGTTCTTGTGGGTTGTTAGACTAGTTCGTAGATATAGGTTTCCATCCTTTGAACAATCTGTTTACGATCAGCTTAGAGTCATATTTATCATCTGACAATTTTCAAAACCAGTTATTCAAATGCACCATTAAGTACTCTCACTCAAAATTATGCAAGTAATCATCATACACGGAAGCATTATGGAACGACAAATAACTGATTCAATACTTGCAATAGCTTGTATCATCATCTCATTGTTTTTATTTCATCTAATACATGCAGGGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAAC</genome_strand>
        <mrna_strand>GTTTATGAGTGGCTCGACATTCCTTGGATGAAGGACTATTACAACTTTGGGTTTGATCACTTCAGTATGACCTGGAGGAAAGTTGGTATCCGGGGTCTTCTTGATTACCTTTTAGGGAATGCTGGTCCATTTGATTTAGGGGACTGGATACTTCCTGATCTTACCATCCAGGGGTGAATTAAGTTGAACAGACACTTGCATTCATTTCCGCAAACATACTACTTCAGCTATGCTACCAAGCATCCTACAAAAGTTATGGGTTCTGCAGTTCCTTCTGGTATTTGAGGGATACATGCTCTGCTATTCATTATAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATACTCGTTTGTCGGTTGAACACCCTACTTGCCTCGTAATTAAAGACTCTGATTGCCACCCGAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596143" ref_strand="-" ref_description="SGN-U596143 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157329819|emb|CAO42648.1| (e_value=2e-60) unnamed; (*ATH) AT1G10740.1 (e_value=9e-59) | Symbol: None | expressed protein | chr1:3568171-3570761 REVERSE | Aliases: T16B5.12, T16B5_12; ">
      <seq>accaagcatcccacaaaagttatggttgtagcagttccttctggcattcgagggatacatcctctgctattcattagagtcctgcaaatgagccaatggcggcatcctcaacatgtttctcctccgtataagggctatagggatgaagattggtgggacaatgacggtgctctcaacaccatatctatgacacatcctcgtttgccggttgaacaccctagttgccttgtaattaaagattctgattgccagccgttgcaacgaggcatctggtactataaaattatagaaggcgaccacattttcttcgtcgtgaatcgtgaaagagaaggagttcaattcgatttgatctacaacagcatattcgagcgctgcaggaaacatgtcttaagaaagacaacagcactgccaaaccaagtaactcctgaatagtcagtaagatacttttctcatttgtttatgaaatactgtattatcacattctttgtagttcttttacacgctgtcgaaaatctatttcgtaaagggaaataagattttacggtcaatgtctctcacactgttcttgtctctatgtaatttggaaagagatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="148028" stop="149825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148328" g_stop="148467" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148468" i_stop="148944" i_length="477">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148945" g_stop="149076" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="272" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149077" i_stop="149201" i_length="125">
            <donor d_prob="0.660" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149202" g_stop="149525" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="596" r_length="324" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U596143" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596143" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="148328" e_stop="148467"/>
          <exon e_start="148945" e_stop="149076"/>
          <exon e_start="149202" e_stop="149525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGCATCCCACAAAAGTTATGGGTTTTGCAGTTCCTTCTGGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAGGTTCGTGTCTATTACTCCTCCTTTACCAATCTACTTAGATAGATGACGATACATTATAGTACAAGCCCTATTCACTTGAGTTTTAATTAGTCAGCAAGATTTTGTAACTCCATTGATGAAAATTTTCTGAAGCATTGAGACTCGTTATTGCGTGACTGTATGTTATGCCTTGCTGCTTTGCTGATCCTTAACCCATCGGGCTATATTCTCATGACAAGTTCTTGTGGGTTGTTAGACTAGTTCGTAGATATAGGTTTCCATCCTTTGAACAATCTGTTTACGATCAGCTTAGAGTCATATTTATCATCTGACAATTTTCAAAACCAGTTATTCAAATGCACCATTAAGTACTCTCACTCAAAATTATGCAAGTAATCATCATACACGGAAGCATTATGGAACGACAAATAACTGATTCAATACTTGCAATAGCTTGTATCATCATCTCATTGTTTTTATTTCATCTAATACATGCAGGGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAACGTGGCATCTGGTAGGTGACCAGTCAGATTGCCTGTCCACAGATTAACTAGACAGTCCATATGCCAATCAGGTTATCACTTGTGTTGATACATTGGTGTTTAAGGCAGCAGTGTTGATTGTTCCTCTCATGTTCAGGTACTATAAAATTATAGAAGGCGACCACATTTTCTTCGTCGTGAATCGTGAAAGAGCTGGAGTTCAATTCGATTTGATCTACAACAGCATATTCGAGCGCTGCAGGAAACATGTCTTAAGAAAGACAACAGCACTGCCAAACCAAGTAACTCCTGAATAGTCAGTAAGATACTTTTCTCATTTGTTTATGAAATACTGTATTATCACATTCTTTGTAGTTCTTTTACACGCTGTCGAAAATCTATTTCGTAAAACGAAATAAGATTTTACGGTCAATGTCTCTCACACTGTTCTTGTCTGTATGTAATTTGAACAGAGATGCAA</genome_strand>
        <mrna_strand>ACCAAGCATCCCACAAAAGTTATGGTTGTAGCAGTTCCTTCTGGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAACGAGGCATCTG.............................................................................................................................GTACTATAAAATTATAGAAGGCGACCACATTTTCTTCGTCGTGAATCGTGAAAGAGAAGGAGTTCAATTCGATTTGATCTACAACAGCATATTCGAGCGCTGCAGGAAACATGTCTTAAGAAAGACAACAGCACTGCCAAACCAAGTAACTCCTGAATAGTCAGTAAGATACTTTTCTCATTTGTTTATGAAATACTGTATTATCACATTCTTTGTAGTTCTTTTACACGCTGTCGAAAATCTATTTCGTAAAGGGAAATAAGATTTTACGGTCAATGTCTCTCACACTGTTCTTGTCTCTATGTAATTTGGAAAGAGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565522" ref_strand="+" ref_description="SGN-U565522 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|115468052|ref|NP_001057625.1| (e_value=5e-34) Os06g0472900; (*ATH) AT5G15180.1 (e_value=3e-35) | Symbol: None | peroxidase, putative, similar to peroxidase ATP12a (Arabidopsis thaliana) gi:1429217:emb:CAA67311 | chr5:4930522-4932345 FORWARD | Aliases: F8M21.70, F8M21_70; (*SWP) sp|Q9LXG3|PER56_ARATH (e_value=3e-34) Peroxidase 56 OS=Arabidopsis thaliana GN=PER56; ">
      <seq>taaggttgggatttttgcagctattttactagtttgcgcgattctatcacctctgctagcctcatcatttcccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaacaccaactggtgggaaaatagagaagttatcaccgtcaaatggtgttacagtcaagggatttgaactcattgacgagatcaaagcagaactcgaagagaactgcccaggcattgtctcgtgctctgatgttttagcctatttatctcgtgacgcctttgttgcatcgggacgcccccatcacgaagtgtctggtggcagacgtgacggcatggaatcgcgcgtagaaaacgtcattggcaacgtccattgcctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150165" stop="152435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150465" g_stop="151014" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="152135" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="848" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-U565522" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150465" e_stop="151014"/>
          <exon e_start="151846" e_stop="152135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGG--AA-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACTCCCCCATTACGAGGTGTCTGGTGGCAGACGTGACGGCATGGAATCGCGCGTAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATGA</genome_strand>
        <mrna_strand>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAACACCAACTGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTGTTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACGCCCCCATCACGAAGTGTCTGGTGGCAGACGTGACGGCATGGAATCGCGCGTAGAAAACGTCATTGGCAACGT-CCATTGCCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>32</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="169" PGL_stop="933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="169" e_stop="933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="169" e_stop="933" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169" stop="933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGTACGGGCAAGCAGTCGAAAAGTAGTTGATCAGGAAAAGGAGCTGGATGCTTCTAACAGGGAACTGGAGGACTTGGGCTCAAGTCTGGTCATATTTTTCCATAACAAGGAGAACACTAAAGAGATGTGTCTTGATGACCTTTTGAAATGTACTGACAACTTTGATCAATCAAATATTGTTGGATGTGGAGGCTTCGGCTTGGTCTACAAGGCCATCCTTCGTGATGGTAGGAAAGTTGCCATCAAGCGGCTTTCAGGTGACTACGGGCAAATGGAGCGAGAATTCCAAGCCGAAGTTGAATCACTTTCAAGAGCTCAGCATCCGAATCTGGTTCATCTTCAAGGATATTGCAAGTACAGAACTGACCGGCTTCTAATTTATTCCTACATGGAGAATGGAAGTTTGGATTATTGGCTGCACGAGAAAGTTGACGGACCTGCTTTATTGGACTGGGATCTGAGGCTTCAAATTGCTCAAGGGGCTGCAAGAGGACTAGCGTACTTGCACCTAGCGTGCGAGCCTCATATCTTGCACCGAGATATAAAGTCTAGTAACATTCTTCTTGACGAAAATTTCGAAGCTCACTTAGCTGATTTCGGTCTTGCAAGGATTATTCGGCCCTACGACACTCATGTGACCACTGATGTTGTCGGAACATTAGGCTATATACCTCCTGAATATGGCCAAGCCTCCGTAGCTACCTATAAAGGGGACGTTTATAGCTTTGGTGTGGTTCTTTTGGAGCTTCTAACATGCAAAAG</gDNA_template>
            <first_frame> C  C  T  G  K  Q  S  K  S  S  *  S  G  K  G  A  G  C  F  *  Q  G  T  G  G  L  G  L  K  S  G  H  I  F  P  *  Q  G  E  H  *  R  D  V  S  *  *  P  F  E  M  Y  *  Q  L  *  S  I  K  Y  C  W  M  W  R  L  R  L  G  L  Q  G  H  P  S  *  W  *  E  S  C  H  Q  A  A  F  R  *  L  R  A  N  G  A  R  I  P  S  R  S  *  I  T  F  K  S  S  A  S  E  S  G  S  S  S  R  I  L  Q  V  Q  N  *  P  A  S  N  L  F  L  H  G  E  W  K  F  G  L  L  A  A  R  E  S  *  R  T  C  F  I  G  L  G  S  E  A  S  N  C  S  R  G  C  K  R  T  S  V  L  A  P  S  V  R  A  S  Y  L  A  P  R  Y  K  V  *  *  H  S  S  *  R  K  F  R  S  S  L  S  *  F  R  S  C  K  D  Y  S  A  L  R  H  S  C  D  H  *  C  C  R  N  I  R  L  Y  T  S  *  I  W  P  S  L  R  S  Y  L  *  R  G  R  L  *  L  W  C  G  S  F  G  A  S  N  M  Q  K </first_frame>
            <second_frame>  V  V  R  A  S  S  R  K  V  V  D  Q  E  K  E  L  D  A  S  N  R  E  L  E  D  L  G  S  S  L  V  I  F  F  H  N  K  E  N  T  K  E  M  C  L  D  D  L  L  K  C  T  D  N  F  D  Q  S  N  I  V  G  C  G  G  F  G  L  V  Y  K  A  I  L  R  D  G  R  K  V  A  I  K  R  L  S  G  D  Y  G  Q  M  E  R  E  F  Q  A  E  V  E  S  L  S  R  A  Q  H  P  N  L  V  H  L  Q  G  Y  C  K  Y  R  T  D  R  L  L  I  Y  S  Y  M  E  N  G  S  L  D  Y  W  L  H  E  K  V  D  G  P  A  L  L  D  W  D  L  R  L  Q  I  A  Q  G  A  A  R  G  L  A  Y  L  H  L  A  C  E  P  H  I  L  H  R  D  I  K  S  S  N  I  L  L  D  E  N  F  E  A  H  L  A  D  F  G  L  A  R  I  I  R  P  Y  D  T  H  V  T  T  D  V  V  G  T  L  G  Y  I  P  P  E  Y  G  Q  A  S  V  A  T  Y  K  G  D  V  Y  S  F  G  V  V  L  L  E  L  L  T  C  K   </second_frame>
            <third_frame>   L  Y  G  Q  A  V  E  K  *  L  I  R  K  R  S  W  M  L  L  T  G  N  W  R  T  W  A  Q  V  W  S  Y  F  S  I  T  R  R  T  L  K  R  C  V  L  M  T  F  *  N  V  L  T  T  L  I  N  Q  I  L  L  D  V  E  A  S  A  W  S  T  R  P  S  F  V  M  V  G  K  L  P  S  S  G  F  Q  V  T  T  G  K  W  S  E  N  S  K  P  K  L  N  H  F  Q  E  L  S  I  R  I  W  F  I  F  K  D  I  A  S  T  E  L  T  G  F  *  F  I  P  T  W  R  M  E  V  W  I  I  G  C  T  R  K  L  T  D  L  L  Y  W  T  G  I  *  G  F  K  L  L  K  G  L  Q  E  D  *  R  T  C  T  *  R  A  S  L  I  S  C  T  E  I  *  S  L  V  T  F  F  L  T  K  I  S  K  L  T  *  L  I  S  V  L  Q  G  L  F  G  P  T  T  L  M  *  P  L  M  L  S  E  H  *  A  I  Y  L  L  N  M  A  K  P  P  *  L  P  I  K  G  T  F  I  A  L  V  W  F  F  W  S  F  *  H  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="170" stop="931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVRASSRKVVDQEKELDASNRELEDLGSSLVIFFHNKENTKEMCLDDLLKCTDNFDQSNIVGCGGFGLVYKAILRDGRKVAIKRLSGDYGQMEREFQAEVESLSRAQHPNLVHLQGYCKYRTDRLLIYSYMENGSLDYWLHEKVDGPALLDWDLRLQIAQGAARGLAYLHLACEPHILHRDIKSSNILLDENFEAHLADFGLARIIRPYDTHVTTDVVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13514" PGL_stop="8613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13514" e_stop="12979"/>
            <exon e_start="8911" e_stop="8856"/>
            <exon e_start="8770" e_stop="8613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.981" acc_prob="0.775" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13514" e_stop="12979" e_length="536"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12978" i_stop="8912" i_length="4067"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8911" e_stop="8856" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.775">
            <gDNA_intron_boundary i_start="8855" i_stop="8771" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="8770" e_stop="8613" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13514" stop="12979"/>
              <exon start="8911" stop="8856"/>
              <exon start="8770" stop="8613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGATCTCTCTGGAATGAAAGTGATTGTGAACTTAAAACCTCCGGTGAAGAAGCTTCCCGGAAGAGTGAGTTTCTTCTCGAGATCTAATTGCAGGGATTGCACCGCTGTGAGGTCGTTTCTGCACAAGGAAAACCTAAACTACGTTGAAATTAACGTCGATGTGTATCCTAAAAGAGAGAAGGAACTAATTGAGAGGACCGGAAGTGCTAATGTGCCGCAGATATTTCTGAATGATAAGTTGTTAGGTGGACTGGTGGCGTTGAACTCGCTACGGAATAGCGGGATGTTGGAGAAGAAATTTGCAGAAATGTTGGCCGGAAAATGCCCGGAGGATGCACCGGCACCACCGGTTTACGGTTTCGACGACGATTACGAGGAGCAAAACGACGAAATGGTAGATATTGTAAGAGTATTGAGGCAAAAGCTTCCGATACAGGACAGAATCATGAGGATGAAAATAGTAAAAAATTGCTTCTCCGGCGGTGAGCTTGTGGAGGTTCTGATCCACCACTTGGACTGCGGCAGGAAAAAG : GCTGTGGAAATTGGGAAGAACCTGGCGAGAAGGCATTTTATTCACCAAGTCTTTGG : AGAAAATGAATTTGAAGATGGAAAACACTTCTATAGATTCCTTGAACATGAGCCTTTTGTTCCCAAATGCTATAATTTTCGAGGATCCACAAATGACAATGAACCCAAGGACGTTGCTGTGTTAGGTCAAAGGCTTGGTAAAATAATGTCTGCATTAC</gDNA_template>
            <first_frame> S  L  I  S  L  E  *  K  *  L  *  T  *  N  L  R  *  R  S  F  P  E  E  *  V  S  S  R  D  L  I  A  G  I  A  P  L  *  G  R  F  C  T  R  K  T  *  T  T  L  K  L  T  S  M  C  I  L  K  E  R  R  N  *  L  R  G  P  E  V  L  M  C  R  R  Y  F  *  M  I  S  C  *  V  D  W  W  R  *  T  R  Y  G  I  A  G  C  W  R  R  N  L  Q  K  C  W  P  E  N  A  R  R  M  H  R  H  H  R  F  T  V  S  T  T  I  T  R  S  K  T  T  K  W  *  I  L  *  E  Y  *  G  K  S  F  R  Y  R  T  E  S  *  G  *  K  *  *  K  I  A  S  P  A  V  S  L  W  R  F  *  S  T  T  W  T  A  A  G  K  R :   L  W  K  L  G  R  T  W  R  E  G  I  L  F  T  K  S  L   : E  K  M  N  L  K  M  E  N  T  S  I  D  S  L  N  M  S  L  L  F  P  N  A  I  I  F  E  D  P  Q  M  T  M  N  P  R  T  L  L  C  *  V  K  G  L  V  K  *  C  L  H  Y </first_frame>
            <second_frame>  V  *  S  L  W  N  E  S  D  C  E  L  K  T  S  G  E  E  A  S  R  K  S  E  F  L  L  E  I  *  L  Q  G  L  H  R  C  E  V  V  S  A  Q  G  K  P  K  L  R  *  N  *  R  R  C  V  S  *  K  R  E  G  T  N  *  E  D  R  K  C  *  C  A  A  D  I  S  E  *  *  V  V  R  W  T  G  G  V  E  L  A  T  E  *  R  D  V  G  E  E  I  C  R  N  V  G  R  K  M  P  G  G  C  T  G  T  T  G  L  R  F  R  R  R  L  R  G  A  K  R  R  N  G  R  Y  C  K  S  I  E  A  K  A  S  D  T  G  Q  N  H  E  D  E  N  S  K  K  L  L  L  R  R  *  A  C  G  G  S  D  P  P  L  G  L  R  Q  E  K   : G  C  G  N  W  E  E  P  G  E  K  A  F  Y  S  P  S  L  W  :  R  K  *  I  *  R  W  K  T  L  L  *  I  P  *  T  *  A  F  C  S  Q  M  L  *  F  S  R  I  H  K  *  Q  *  T  Q  G  R  C  C  V  R  S  K  A  W  *  N  N  V  C  I   </second_frame>
            <third_frame>   F  D  L  S  G  M  K  V  I  V  N  L  K  P  P  V  K  K  L  P  G  R  V  S  F  F  S  R  S  N  C  R  D  C  T  A  V  R  S  F  L  H  K  E  N  L  N  Y  V  E  I  N  V  D  V  Y  P  K  R  E  K  E  L  I  E  R  T  G  S  A  N  V  P  Q  I  F  L  N  D  K  L  L  G  G  L  V  A  L  N  S  L  R  N  S  G  M  L  E  K  K  F  A  E  M  L  A  G  K  C  P  E  D  A  P  A  P  P  V  Y  G  F  D  D  D  Y  E  E  Q  N  D  E  M  V  D  I  V  R  V  L  R  Q  K  L  P  I  Q  D  R  I  M  R  M  K  I  V  K  N  C  F  S  G  G  E  L  V  E  V  L  I  H  H  L  D  C  G  R  K  K  :  A  V  E  I  G  K  N  L  A  R  R  H  F  I  H  Q  V  F  G :   E  N  E  F  E  D  G  K  H  F  Y  R  F  L  E  H  E  P  F  V  P  K  C  Y  N  F  R  G  S  T  N  D  N  E  P  K  D  V  A  V  L  G  Q  R  L  G  K  I  M  S  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13512" stop="12979"/>
                    <exon start="8911" stop="8856"/>
                    <exon start="8770" stop="8614"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLSGMKVIVNLKPPVKKLPGRVSFFSRSNCRDCTAVRSFLHKENLNYVEINVDVYPKREKELIERTGSANVPQIFLNDKLLGGLVALNSLRNSGMLEKKFAEMLAGKCPEDAPAPPVYGFDDDYEEQNDEMVDIVRVLRQKLPIQDRIMRMKIVKNCFSGGELVEVLIHHLDCGRKKAVEIGKNLARRHFIHQVFGENEFEDGKHFYRFLEHEPFVPKCYNFRGSTNDNEPKDVAVLGQRLGKIMSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33154" PGL_stop="35671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33154" e_stop="33618"/>
            <exon e_start="34294" e_stop="34422"/>
            <exon e_start="35630" e_stop="35671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.997" acc_prob="0.691" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="33154" e_stop="33618" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33619" i_stop="34293" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34294" e_stop="34422" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.691">
            <gDNA_intron_boundary i_start="34423" i_stop="35629" i_length="1207"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35630" e_stop="35671" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33154" stop="33618"/>
              <exon start="34294" stop="34422"/>
              <exon start="35630" stop="35671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGACTGAAGAATGGGTAATGTCTTACCTTTTGGAATTTACTTCAGAAGATATCAGTTTTGAAGAAACAAATTGAAAATTTCTGCTCTACACTTTTTTTTCAGCTGCTCACAATGTTCTCTTCATTGTTCTGAAATTTTAAATAGTTTTTGTCTTGTCAAATTAAAAATTACTGTTTTGTGCAGTGGGTTCAATGTGATAAGTGTGAAGCTTGGCAACATCAGATTTGTGCATTGTTCAATGGTAGGAGGAATGATGGTGGGCAAGCCGAGTATACCTGTCCCAATTGCTATATTATAGAGGTTGAAAGAGGTGAGCGTAAGCCCTTACCACAGAGTGCTGTTCTTGGAGCCAAAGATCTGCCTCGCACATGTCTCAGTGATCATATTGAGGTTCGATTAGATAGGGTTTTGAAGGATGATAGACAAAAAAGAGCAGAACGTGAAGGAAAAAGTTATGATGAG : GTTCCCGGTGCTGAAGGGCTTGTTGTAAGAGTTGTGTCATCAGTAGACAAAAAGTTAGAAGTGAAATCAAGGTTTCTTGAGGTCTTTCAAGAAGAGAACTATCCGCTGGAGTTCCCATATAAATCAAAG : GTGTTATTGTTATTTCAGAAAATTGAGGGTGTAGAAGTGTGC</gDNA_template>
            <first_frame> R  R  L  K  N  G  *  C  L  T  F  W  N  L  L  Q  K  I  S  V  L  K  K  Q  I  E  N  F  C  S  T  L  F  F  Q  L  L  T  M  F  S  S  L  F  *  N  F  K  *  F  L  S  C  Q  I  K  N  Y  C  F  V  Q  W  V  Q  C  D  K  C  E  A  W  Q  H  Q  I  C  A  L  F  N  G  R  R  N  D  G  G  Q  A  E  Y  T  C  P  N  C  Y  I  I  E  V  E  R  G  E  R  K  P  L  P  Q  S  A  V  L  G  A  K  D  L  P  R  T  C  L  S  D  H  I  E  V  R  L  D  R  V  L  K  D  D  R  Q  K  R  A  E  R  E  G  K  S  Y  D  E  :  V  P  G  A  E  G  L  V  V  R  V  V  S  S  V  D  K  K  L  E  V  K  S  R  F  L  E  V  F  Q  E  E  N  Y  P  L  E  F  P  Y  K  S  K  :  V  L  L  L  F  Q  K  I  E  G  V  E  V  C </first_frame>
            <second_frame>  G  D  *  R  M  G  N  V  L  P  F  G  I  Y  F  R  R  Y  Q  F  *  R  N  K  L  K  I  S  A  L  H  F  F  F  S  C  S  Q  C  S  L  H  C  S  E  I  L  N  S  F  C  L  V  K  L  K  I  T  V  L  C  S  G  F  N  V  I  S  V  K  L  G  N  I  R  F  V  H  C  S  M  V  G  G  M  M  V  G  K  P  S  I  P  V  P  I  A  I  L  *  R  L  K  E  V  S  V  S  P  Y  H  R  V  L  F  L  E  P  K  I  C  L  A  H  V  S  V  I  I  L  R  F  D  *  I  G  F  *  R  M  I  D  K  K  E  Q  N  V  K  E  K  V  M  M  R :   F  P  V  L  K  G  L  L  *  E  L  C  H  Q  *  T  K  S  *  K  *  N  Q  G  F  L  R  S  F  K  K  R  T  I  R  W  S  S  H  I  N  Q  R :   C  Y  C  Y  F  R  K  L  R  V  *  K  C   </second_frame>
            <third_frame>   E  T  E  E  W  V  M  S  Y  L  L  E  F  T  S  E  D  I  S  F  E  E  T  N  *  K  F  L  L  Y  T  F  F  S  A  A  H  N  V  L  F  I  V  L  K  F  *  I  V  F  V  L  S  N  *  K  L  L  F  C  A  V  G  S  M  *  *  V  *  S  L  A  T  S  D  L  C  I  V  Q  W  *  E  E  *  W  W  A  S  R  V  Y  L  S  Q  L  L  Y  Y  R  G  *  K  R  *  A  *  A  L  T  T  E  C  C  S  W  S  Q  R  S  A  S  H  M  S  Q  *  S  Y  *  G  S  I  R  *  G  F  E  G  *  *  T  K  K  S  R  T  *  R  K  K  L  *  *   : G  S  R  C  *  R  A  C  C  K  S  C  V  I  S  R  Q  K  V  R  S  E  I  K  V  S  *  G  L  S  R  R  E  L  S  A  G  V  P  I  *  I  K   : G  V  I  V  I  S  E  N  *  G  C  R  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33301" stop="33618"/>
                    <exon start="34294" stop="34422"/>
                    <exon start="35630" stop="35671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSCQIKNYCFVQWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIIEVERGERKPLPQSAVLGAKDLPRTCLSDHIEVRLDRVLKDDRQKRAEREGKSYDEVPGAEGLVVRVVSSVDKKLEVKSRFLEVFQEENYPLEFPYKSKVLLLFQKIEGVEVC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35694" PGL_stop="41073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35694" e_stop="35830"/>
            <exon e_start="35922" e_stop="36064"/>
            <exon e_start="36219" e_stop="36531"/>
            <exon e_start="36928" e_stop="37067"/>
            <exon e_start="40195" e_stop="40273"/>
            <exon e_start="40352" e_stop="40744"/>
            <exon e_start="40958" e_stop="41073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.972"/>
          <exon-intron don_prob="0.977" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35694" e_stop="35830" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.957">
            <gDNA_intron_boundary i_start="35831" i_stop="35921" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="35922" e_stop="36064" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36065" i_stop="36218" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36219" e_stop="36531" e_length="313"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.962">
            <gDNA_intron_boundary i_start="36532" i_stop="36927" i_length="396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36928" e_stop="37067" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40195" e_stop="40273" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40352" e_stop="40744" e_length="393"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="40745" i_stop="40957" i_length="213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40958" e_stop="41073" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35694" stop="35830"/>
              <exon start="35922" stop="36064"/>
              <exon start="36219" stop="36234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36021" stop="36064"/>
              <exon start="36219" stop="36531"/>
              <exon start="36928" stop="37067"/>
              <exon start="40195" stop="40273"/>
              <exon start="40352" stop="40744"/>
              <exon start="40958" stop="41073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGGATCTGAATGCGCACAACCAAATCATCGTCGTGTTTATCTCTCGTATCTAGATTCTGTCAAATATTTCAGGCCTGAGATCAAAGCTGCATCTGGCGAGGCTCTTCGCACTTATGTGTACCATGAAATTTTG : ATTGGATATTTAGAATATTGCAAAAAGCGTGGTTTCTCAAGTTGCTATATATGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATATTATATTGCCACCCAGAAATCCAGAAAACCCCAAAATCTGACAAACTCAGAGAGTG : GTATTTATCAATGTTACGAAAAGCTGTGAAGGAAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAA : CTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAA : GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCA : ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACAACAACGAGTTCTGCAG : CTTAGGAAGATGCTTGACCTCTTGGTGCATGCATCTCAGTGCCGCTCTTCCCATTGTCAATATCCAAACTGTCGGAAAGTTAAGGGGCTTTTCCGCCATGGTATACAGTGCAAAGT</gDNA_template>
            <first_frame> N  L  D  L  N  A  H  N  Q  I  I  V  V  F  I  S  R  I  *  I  L  S  N  I  S  G  L  R  S  K  L  H  L  A  R  L  F  A  L  M  C  T  M  K  F  * :   L  D  I  *  N  I  A  K  S  V  V  S  Q  V  A  I  Y  G  L  V  L  H  *  R  V  K  I  I  Y  Y  I  A  T  Q  K  S  R  K  P  Q  N  L  T  N  S  E  S   : G  I  Y  Q  C  Y  E  K  L  *  R  K  R  L  L  W  I  S  Q  I  Y  L  T  I  S  S  P  P  Q  A  N  V  K  L  K  S  L  Q  L  A  C  P  I  L  M  E  T  I  G  L  V  Q  Q  R  I  *  F  F  N  F  N  K  K  K  M  G  G  N  I  I  R  R  G  L  *  R  R  P  Y  Q  K  E  L  L  K  H  L  V  N  P  I  F  L  E  M  Q  L  R  I  Y  F  *  C  T  N :   L  V  K  L  F  L  Q  *  R  K  I  L  L  W  S  I  C  S  M  H  V  L  I  A  V  F  *  W  Y  P  V  I  V  G  Y  A  N  N  A  R  T  F  S  F  A  T   : S  A  M  K  L  S  K  N  S  K  P  E  K  G  I  L  S  I  T  R  T  F  I  C  F  I  Q :   L  K  L  M  M  Y  L  L  I  Q  R  I  Q  M  K  F  L  R  V  S  F  L  I  Q  G  R  H  F  *  A  F  V  K  E  T  I  T  N  M  I  P  C  G  V  L  N  I  P  Q  *  W  S  F  T  T  F  I  I  P  L  H  Q  L  L  *  Q  L  A  I  F  V  I  L  T  *  K  Q  V  K  V  G  G  V  K  L  V  L  I  M  M  Y  V  M  L  A  I  R  R  M  V  E  L  I  I  L  T  S  *  L  I  T  H  P  L  L  S  V  M  L  R  I  K  K  L  D  N  N  E  F  C  S :   L  G  R  C  L  T  S  W  C  M  H  L  S  A  A  L  P  I  V  N  I  Q  T  V  G  K  L  R  G  F  S  A  M  V  Y  S  A  K  </first_frame>
            <second_frame>  I  W  I  *  M  R  T  T  K  S  S  S  C  L  S  L  V  S  R  F  C  Q  I  F  Q  A  *  D  Q  S  C  I  W  R  G  S  S  H  L  C  V  P  *  N  F   : D  W  I  F  R  I  L  Q  K  A  W  F  L  K  L  L  Y  M  G  L  S  S  T  E  G  *  R  L  Y  I  I  L  P  P  R  N  P  E  N  P  K  I  *  Q  T  Q  R  V  :  V  F  I  N  V  T  K  S  C  E  G  K  D  C  C  G  S  H  K  F  I  *  P  F  L  H  H  H  R  R  M  *  S  *  N  H  C  S  S  P  A  L  F  *  W  R  L  L  A  W  C  S  R  G  Y  D  F  S  T  S  T  R  R  R  W  E  E  T  S  *  E  G  G  Y  E  E  D  H  I  K  K  S  S  *  S  I  W  S  I  R  S  F  W  K  C  N  *  G  Y  T  S  N  A  Q   : T  W  *  N  Y  F  S  N  E  G  R  F  Y  Y  G  P  F  A  A  C  M  Y  S  L  L  Y  S  D  G  I  R  *  S  L  G  M  Q  T  M  Q  E  L  S  A  L  R  Q  :  V  L  *  S  *  A  K  T  R  S  Q  R  K  A  S  S  L  S  Q  G  H  S  Y  A  L  S   : N  *  N  *  *  C  T  C  *  Y  K  G  S  R  *  N  S  *  E  *  V  F  *  Y  K  A  G  I  F  E  P  L  S  R  K  P  L  P  I  *  Y  P  A  A  C  *  T  F  L  N  D  G  P  L  P  P  S  *  S  H  C  T  S  F  C  D  N  L  Q  Y  L  S  S  *  H  R  N  R  S  R  L  A  V  *  N  L  S  *  L  *  C  M  *  C  L  L  S  E  G  W  W  S  *  S  S  S  Q  V  N  S  S  P  I  H  C  *  A  *  C  S  E  *  R  S  *  T  T  T  S  S  A   : A  *  E  D  A  *  P  L  G  A  C  I  S  V  P  L  F  P  L  S  I  S  K  L  S  E  S  *  G  A  F  P  P  W  Y  T  V  Q  S </second_frame>
            <third_frame>   F  G  S  E  C  A  Q  P  N  H  R  R  V  Y  L  S  Y  L  D  S  V  K  Y  F  R  P  E  I  K  A  A  S  G  E  A  L  R  T  Y  V  Y  H  E  I  L  :  I  G  Y  L  E  Y  C  K  K  R  G  F  S  S  C  Y  I  W  A  C  P  P  L  K  G  E  D  Y  I  L  Y  C  H  P  E  I  Q  K  T  P  K  S  D  K  L  R  E  W :   Y  L  S  M  L  R  K  A  V  K  E  K  I  V  V  D  L  T  N  L  F  D  H  F  F  T  T  T  G  E  C  K  A  K  I  T  A  A  R  L  P  Y  F  D  G  D  Y  W  P  G  A  A  E  D  M  I  F  Q  L  Q  Q  E  E  D  G  R  K  H  H  K  K  G  A  M  K  K  T  I  S  K  R  A  L  K  A  S  G  Q  S  D  L  S  G  N  A  T  K  D  I  L  L  M  H  K  :  L  G  E  T  I  S  P  M  K  E  D  F  I  M  V  H  L  Q  H  A  C  T  H  C  C  I  L  M  V  S  G  N  R  W  V  C  K  Q  C  K  N  F  Q  L  C  D  K :   C  Y  E  V  E  Q  K  L  E  A  R  E  R  H  P  L  Y  H  K  D  I  H  M  L  Y  P  :  T  E  I  D  D  V  P  A  D  T  K  D  P  D  E  I  L  E  S  E  F  F  D  T  R  Q  A  F  L  S  L  C  Q  G  N  H  Y  Q  Y  D  T  L  R  R  A  K  H  S  S  M  M  V  L  Y  H  L  H  N  P  T  A  P  A  F  V  T  T  C  N  I  C  H  L  D  I  E  T  G  Q  G  W  R  C  E  T  C  P  D  Y  D  V  C  N  A  C  Y  Q  K  D  G  G  V  D  H  P  H  K  L  T  H  H  P  S  I  A  E  R  D  A  Q  N  K  E  A  R  Q  Q  R  V  L  Q  :  L  R  K  M  L  D  L  L  V  H  A  S  Q  C  R  S  S  H  C  Q  Y  P  N  C  R  K  V  K  G  L  F  R  H  G  I  Q  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35696" stop="35830"/>
                    <exon start="35922" stop="36064"/>
                    <exon start="36219" stop="36531"/>
                    <exon start="36928" stop="37067"/>
                    <exon start="40195" stop="40273"/>
                    <exon start="40352" stop="40744"/>
                    <exon start="40958" stop="41071"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSECAQPNHRRVYLSYLDSVKYFRPEIKAASGEALRTYVYHEILIGYLEYCKKRGFSSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAVKEKIVVDLTNLFDHFFTTTGECKAKITAARLPYFDGDYWPGAAEDMIFQLQQEEDGRKHHKKGAMKKTISKRALKASGQSDLSGNATKDILLMHKLGETISPMKEDFIMVHLQHACTHCCILMVSGNRWVCKQCKNFQLCDKCYEVEQKLEARERHPLYHKDIHMLYPTEIDDVPADTKDPDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCETCPDYDVCNACYQKDGGVDHPHKLTHHPSIAERDAQNKEARQQRVLQLRKMLDLLVHASQCRSSHCQYPNCRKVKGLFRHGIQCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41138" PGL_stop="42450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41138" e_stop="41175"/>
            <exon e_start="41818" e_stop="42450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41138" e_stop="41175" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41818" e_stop="42450" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41138" stop="41175"/>
              <exon start="41818" stop="42450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576968" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG : AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTT</gDNA_template>
            <first_frame> A  C  K  V  S  E  C  H  V  P  R  C  R :   D  L  K  E  H  L  R  R  L  Q  Q  Q  A  D  S  R  R  R  A  A  V  M  E  M  M  R  Q  R  A  A  E  V  A  N  S  A  G  *  P  Y  C  T  S  C  N  G  H  T  Q  V  V  N  A  V  L  V  G  I  N  I  I  G  E  E  K  I  S  *  R  T  G  N  C  *  R  T  Y  K  H  V  H  C  W  L  T  I  T  Y  P  W  T  Y  I  I  R  V  A  L  I  N  N  A  S  L  G  V  Y  R  I  P  S  I  P  H  P  *  L  I  S  D  F  L  *  N  F  I  L  W  N  C  *  G  Q  M  C  L  F  S  *  L  I  L  S  C  I  K  H  W  D  F  L  F  V  *  I  V  S  C  L  I  *  K  C  S  S  T  S  H  V  A  S  Y  *  S  L  L  K  L  V  L  D  S  F  L  P  N  V  T  M  I  *  V  R  A  *  S  *  N  R  Y  N  I  *  R  *  F  L  I  L  *   </first_frame>
            <second_frame>  L  A  K  Y  P  S  V  M  C  R  D  A   : E  I  *  K  N  I  F  E  G  C  N  S  K  L  I  L  G  G  G  L  L  L  W  R  *  *  D  S  V  L  Q  R  L  P  T  V  L  G  D  H  I  V  Q  V  V  M  D  I  H  K  L  L  M  L  Y  L  *  V  S  T  L  L  G  K  K  R  S  R  S  V  Q  E  T  A  N  E  H  T  S  M  F  I  A  G  *  P  S  P  T  R  G  P  I  L  S  E  L  L  S  S  T  M  H  L  L  E  C  I  G  F  R  A  F  P  T  R  S  S  *  V  I  F  F  K  I  L  F  C  G  I  V  E  G  K  C  A  C  F  P  D  *  F  Y  H  A  L  N  I  G  I  S  F  S  C  E  *  L  V  V  L  F  K  N  A  Q  V  L  H  M  *  Q  V  T  S  P  C  *  N  L  F  L  T  V  F  Y  P  M  *  R  *  Y  E  S  E  L  K  A  E  I  D  I  I  Y  R  D  N  F  S  F  Y  S  </second_frame>
            <third_frame>   L  Q  S  I  R  V  S  C  A  A  M  Q  :  R  F  E  R  T  S  S  K  A  A  T  A  S  *  F  S  A  A  G  C  C  Y  G  D  D  E  T  A  C  C  R  G  C  Q  Q  C  W  V  T  I  L  Y  K  L  *  W  T  Y  T  S  C  *  C  C  T  C  R  Y  Q  H  Y  W  G  R  K  D  L  V  A  Y  R  K  L  L  T  N  I  Q  A  C  S  L  L  V  N  H  H  L  P  V  D  L  Y  Y  P  S  C  S  H  Q  Q  C  I  S  W  S  V  *  D  S  E  H  S  P  P  V  A  H  K  *  F  S  L  K  F  Y  S  V  E  L  L  R  A  N  V  P  V  F  L  I  N  F  I  M  H  *  T  L  G  F  P  F  R  V  N  S  *  L  S  Y  L  K  M  L  K  Y  F  T  C  S  K  L  L  V  L  A  K  T  C  S  *  Q  F  F  T  Q  C  D  D  D  M  S  P  S  L  K  L  K  S  I  *  Y  I  E  I  I  S  H  F  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48484" PGL_stop="43987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48484" e_stop="48378"/>
            <exon e_start="46526" e_stop="46047"/>
            <exon e_start="45281" e_stop="43987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48484" e_stop="48378" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46526" e_stop="46047" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="45281" e_stop="43987" e_length="1295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48484" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="43987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG : GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG : GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCC</gDNA_template>
            <first_frame> E  R  K  R  K  I  L  K  K  Q  M  G  C  A  S  T  M  T  I  I  I  L  S  *  K  K  K  F  S  L  I  F  L  *  F  R :   D  I  F  Q  L  W  S  *  V  T  T  R  F  *  M  W  G  C  F  *  L  Q  P  F  W  *  Q  S  S  Y  L  H  *  L  C  P  D  L  R  N  V  C  L  Q  W  L  R  H  G  L  L  L  V  G  *  S  V  F  L  K  G  Q  L  *  C  L  D  R  S  I  Q  S  L  G  V  C  L  L  *  I  C  *  T  R  T  S  H  S  S  L  V  Q  K  F  L  H  I  F  S  K  P  Q  K  Q  I  L  A  N  K  R  F  I  S  S  M  C  L  P  L  D  L  V  W  F  L  M  L  I  I  Q  L  G  R  N  S  S  G  S  L  L  K  L  S  E  S  L  S  *  R  A  M  *  I  R  W  L  Q  K  L  R :   N  T  S  R  N  G  V  R  V  V  K  *  T  *  N  M  N  W  S  I  L  S  Y  *  Q  L  V  D  V  C  W  E  K  R  S  A  I  N  S  L  M  M  C  L  L  S  S  M  T  W  T  M  G  C  S  L  S  V  L  S  F  P  T  F  Q  F  Q  P  I  A  D  V  T  M  P  G  R  S  *  Q  R  S  L  Q  T  S  *  I  L  E  N  V  Q  A  R  Q  R  M  I  C  Y  N  A  S  L  T  Q  S  T  K  M  D  G  Q  Q  Q  R  V  R  S  Q  V  F  *  L  L  L  F  S  L  G  S  T  P  V  R  S  L  P  L  G  Q  G  H  T  S  S  P  T  T  S  T  C  R  L  L  *  M  N  R  R  I  *  *  R  N  T  G  I  R  L  I  T  I  S  F  P  R  W  K  S  S  T  D  A  *  R  K  P  S  D  S  I  L  H  *  *  C  F  C  V  V  H  I  A  N  S  V  L  Q  P  E  K  E  K  S  M  T  F  P  R  D  I  S  L  Q  P  H  L  L  L  Q  T  G  C  H  I  S  S  R  I  Q  I  L  T  T  L  I  G  S  A  L  V  E  K  K  I  R  L  Q  E  H  S  H  I  F  L  L  V  E  A  D  M  V  V  L  E  N  H  L  L  I  C  R  L  K  Q  Y  G  V  T  C  *  E  I  S  S  L  N  *  S  R  L  S  L  K  L  T  G  T  L  W  L  S  V  S  K  G  K  *  W  *  S  T  S  A  E  S  S  L  L  N  K  Q  I  T  S  A  *  M  W  *  F  K  I  I  Y  V  G  L  L  N  L  I  S  C  L  M  L  T  S  M  F  N  V  S  P  V  S  L  E  D  C  N  D  *  D  Y  I  I  R  V  *  C  F  T  L  V  C  V  F  F  H  W  I  L  S  Y  S  H  *  Q  *  V  N  S  N  C  T  G  S  Y  L  L  K  R  F  K  F  A  L  Y  S  L  C  N  L  P  Y  V  F  </first_frame>
            <second_frame>  K  E  K  G  K  S  S  K  S  K  W  G  A  P  P  L  *  L  S  L  F  S  L  E  K  R  N  F  H  *  F  F  F  N  S   : G  I  F  F  S  Y  G  V  R  *  Q  Q  D  F  E  C  G  V  A  F  S  C  N  P  F  G  S  K  A  H  I  C  T  N  Y  A  Q  I  *  E  T  F  A  S  S  G  *  G  M  A  Y  C  W  W  V  D  P  F  S  *  R  A  S  C  D  A  *  T  G  V  S  K  A  W  E  C  V  Y  S  E  F  V  E  Q  E  H  H  I  L  H  W  S  R  S  F  C  T  F  F  Q  S  P  R  N  R  S  *  P  T  R  G  L  S  V  Q  C  A  Y  L  W  T  W  C  G  F  *  C  *  L  Y  N  *  A  G  T  V  Q  V  L  Y  *  S  S  Q  S  H  *  V  E  G  L  C  R  S  D  G  Y  R  S  *   : G  I  L  L  E  M  G  *  E  W  *  S  R  P  K  I  *  T  G  A  S  Y  H  I  D  S  *  *  M  S  V  G  R  R  G  P  Q  *  T  L  *  *  C  V  C  S  L  P  *  P  G  Q  W  D  A  P  Y  Q  C  Y  L  S  L  P  S  N  S  S  P  S  P  T  *  Q  C  Q  E  E  A  S  R  D  L  C  K  H  H  K  F  S  K  T  Y  R  Q  G  R  E  *  Y  V  T  M  L  H  *  L  K  V  Q  R  W  T  A  N  N  R  G  *  D  H  R  S  S  D  C  C  S  F  R  W  A  A  H  Q  F  D  H  F  H  L  D  R  V  I  P  P  H  Q  R  Q  V  H  V  G  C  C  R  *  T  E  E  S  D  E  E  T  R  E  *  G  *  S  R  Y  P  F  R  D  G  S  P  L  Q  M  H  K  G  S  P  Q  T  P  S  S  T  D  N  A  S  A  *  F  T  *  R  I  Q  C  Y  N  Q  R  R  K  R  V  *  H  S  Q  G  T  Y  R  C  N  L  T  C  F  C  K  Q  A  A  T  Y  L  Q  E  S  R  Y  L  R  P  *  *  V  R  P  W  *  R  R  R  *  G  C  R  S  I  L  I  Y  F  F  W  W  R  Q  T  W  L  S  W  R  T  I  C  L  S  A  D  *  S  N  M  E  S  L  A  E  K  F  R  V  *  T  D  L  A  F  P  *  N  *  L  E  R  Y  G  C  R  C  Q  R  G  S  N  G  E  V  Q  A  P  K  A  L  C  *  I  S  R  *  H  L  H  E  C  G  S  L  R  S  F  M  L  V  C  *  T  L  F  L  V  *  C  *  L  L  C  L  M  L  V  L  F  L  L  K  I  A  M  T  K  I  I  L  L  E  Y  D  V  L  H  *  F  V  F  S  S  I  G  F  Y  H  I  L  T  N  N  K  L  I  Q  T  V  Q  E  V  I  F  *  K  G  L  S  L  H  Y  I  H  Y  A  I  Y  H  M  F  S </second_frame>
            <third_frame>   K  K  K  E  N  P  Q  K  A  N  G  V  R  L  H  Y  D  Y  H  Y  S  L  L  K  K  E  I  F  I  N  F  S  L  I  Q  :  G  Y  F  S  A  M  E  L  G  D  N  K  I  L  N  V  G  L  L  L  V  A  T  L  L  V  A  K  L  I  S  A  L  I  M  P  R  S  K  K  R  L  P  P  V  V  K  A  W  P  I  V  G  G  L  I  R  F  L  K  G  P  V  V  M  L  R  Q  E  Y  P  K  L  G  S  V  F  T  L  N  L  L  N  K  N  I  T  F  F  I  G  P  E  V  S  A  H  F  F  K  A  P  E  T  D  L  S  Q  Q  E  V  Y  Q  F  N  V  P  T  F  G  P  G  V  V  F  D  V  D  Y  T  I  R  Q  E  Q  F  R  F  F  T  E  A  L  R  V  T  K  L  K  G  Y  V  D  Q  M  V  T  E  A  E  :  E  Y  F  S  K  W  G  E  S  G  E  V  D  L  K  Y  E  L  E  H  L  I  I  L  T  A  S  R  C  L  L  G  E  E  V  R  N  K  L  F  D  D  V  S  A  L  F  H  D  L  D  N  G  M  L  P  I  S  V  I  F  P  Y  L  P  I  P  A  H  R  R  R  D  N  A  R  K  K  L  A  E  I  F  A  N  I  I  N  S  R  K  R  T  G  K  A  E  N  D  M  L  Q  C  F  I  D  S  K  Y  K  D  G  R  P  T  T  E  G  E  I  T  G  L  L  I  A  A  L  F  A  G  Q  H  T  S  S  I  T  S  T  W  T  G  S  Y  L  L  T  N  D  K  Y  M  S  A  V  V  D  E  Q  K  N  L  M  K  K  H  G  N  K  V  D  H  D  I  L  S  E  M  E  V  L  Y  R  C  I  K  E  A  L  R  L  H  P  P  L  I  M  L  L  R  S  S  H  S  E  F  S  V  T  T  R  E  G  K  E  Y  D  I  P  K  G  H  I  V  A  T  S  P  A  F  A  N  R  L  P  H  I  F  K  N  P  D  T  Y  D  P  D  R  F  G  P  G  R  E  E  D  K  A  A  G  A  F  S  Y  I  S  F  G  G  G  R  H  G  C  L  G  E  P  F  A  Y  L  Q  I  K  A  I  W  S  H  L  L  R  N  F  E  F  E  L  I  S  P  F  P  E  I  D  W  N  A  M  V  V  G  V  K  G  E  V  M  V  K  Y  K  R  R  K  L  S  V  E  *  A  D  N  I  C  M  N  V  V  V  *  D  H  L  C  W  F  V  K  P  Y  F  L  F  N  V  D  F  Y  V  *  C  *  S  C  F  S  *  R  L  Q  *  L  R  L  Y  Y  *  S  M  M  F  Y  I  S  L  C  F  L  P  L  D  F  I  I  F  S  L  T  I  S  *  F  K  L  Y  R  K  L  S  S  E  K  V  *  V  C  I  I  F  I  M  Q  S  T  I  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48482" stop="48378"/>
                    <exon start="46526" stop="46047"/>
                    <exon start="45281" stop="44283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKENPQKANGVRLHYDYHYSLLKKEIFINFSLIQGYFSAMELGDNKILNVGLLLVATLLVAKLISALIMPRSKKRLPPVVKAWPIVGGLIRFLKGPVVMLRQEYPKLGSVFTLNLLNKNITFFIGPEVSAHFFKAPETDLSQQEVYQFNVPTFGPGVVFDVDYTIRQEQFRFFTEALRVTKLKGYVDQMVTEAEEYFSKWGESGEVDLKYELEHLIILTASRCLLGEEVRNKLFDDVSALFHDLDNGMLPISVIFPYLPIPAHRRRDNARKKLAEIFANIINSRKRTGKAENDMLQCFIDSKYKDGRPTTEGEITGLLIAALFAGQHTSSITSTWTGSYLLTNDKYMSAVVDEQKNLMKKHGNKVDHDILSEMEVLYRCIKEALRLHPPLIMLLRSSHSEFSVTTREGKEYDIPKGHIVATSPAFANRLPHIFKNPDTYDPDRFGPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAMVVGVKGEVMVKYKRRKLSVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46133" e_stop="45507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="46133" e_stop="45507" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46133" stop="45507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGA</gDNA_template>
            <first_frame> R  Q  E  Q  F  R  F  F  T  E  A  L  R  V  T  K  L  K  G  Y  V  D  Q  M  V  T  E  A  E  V  Y  *  K  K  S  V  I  F  S  *  I  *  L  M  T  F  R  V  C  L  F  I  N  V  C  L  S  F  K  S  F  I  T  V  D  S  C  L  C  A  L  I  V  F  Q  D  N  L  T  C  V  T  V  I  K  R  R  K  C  L  Y  W  S  P  *  L  L  R  *  C  P  Q  S  L  E  I  L  C  F  L  D  S  P  K  M  L  S  H  L  C  L  D  P  L  K  I  Y  *  L  W  R  I  L  R  A  P  V  E  S  L  R  R  G  G  N  I  C  L  K  E  L  A  F  A  T  P  F  V  *  I  N  Q  K  G  G  F  S  *  S  R  M  H  C  K  F  R  F  H  H  R  F  *  S  *  N  L  K  N  *  V  I  K  V  V  I  F  R  T  *  I  C  V  W  T  C  V  L  L  G </first_frame>
            <second_frame>  G  R  N  S  S  G  S  L  L  K  L  S  E  S  L  S  *  R  A  M  *  I  R  W  L  Q  K  L  R  Y  T  K  K  N  L  L  S  F  L  E  F  D  *  *  H  L  E  F  V  Y  L  L  M  F  A  *  V  L  S  L  L  L  Q  W  T  H  V  C  V  L  *  L  C  F  K  I  I  *  P  V  L  L  L  L  N  E  E  N  V  Y  I  G  R  L  S  C  *  D  N  V  L  R  A  *  K  S  Y  V  S  W  T  L  Q  K  C  C  P  T  C  V  W  I  L  *  K  S  T  N  F  G  G  S  F  E  H  R  L  S  L  *  E  E  V  E  I  F  V  *  R  N  *  H  L  Q  H  L  L  C  E  L  T  K  R  G  A  S  V  N  H  A  C  T  V  S  F  G  F  T  I  D  F  E  V  E  T  *  K  I  E  L  L  K  *  *  F  F  E  L  E  F  V  F  G  H  A  F  C  L   </second_frame>
            <third_frame>   A  G  T  V  Q  V  L  Y  *  S  S  Q  S  H  *  V  E  G  L  C  R  S  D  G  Y  R  S  *  G  I  L  K  K  I  C  Y  L  F  L  N  L  I  D  D  I  *  S  L  F  I  Y  *  C  L  L  K  F  *  V  F  Y  Y  S  G  L  M  S  V  C  S  D  C  V  S  R  *  F  D  L  C  Y  C  Y  *  T  K  K  M  F  I  L  V  A  L  V  V  K  I  M  S  S  E  L  R  N  L  M  F  L  G  L  S  K  N  V  V  P  L  V  S  G  S  S  K  N  L  L  T  L  E  D  P  S  S  T  G  *  V  F  E  K  R  W  K  Y  L  F  K  G  T  S  I  C  N  T  F  C  V  N  *  P  K  G  G  L  Q  L  I  T  H  A  L  *  V  S  V  S  P  *  I  L  K  L  K  L  E  K  L  S  Y  *  S  S  N  F  S  N  L  N  L  C  L  D  M  R  F  A  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="58419" PGL_stop="54350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58419" e_stop="58056"/>
            <exon e_start="56841" e_stop="56590"/>
            <exon e_start="54728" e_stop="54350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.593" acc_prob="0.681" e_score="0.992"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="58419" e_stop="58056" e_length="364"/>
          </exon>
          <intron i_serial="1" don_prob="0.593" acc_prob="0.681">
            <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56841" e_stop="56590" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="54728" e_stop="54350" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58419" stop="58056"/>
              <exon start="56841" stop="56590"/>
              <exon start="54728" stop="54350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAACCATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG : GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG : GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTCTTGCTGCCTCTGCATCAGTTTCATCTCCTTATGTATTGAAAAACAGTTGATGCCATCAGTGTTGTGTATTGCAATAACCTATGTTGCTCGAACTGTTCATAAATGGTGATGGGGTATGTCGGATCCTCCAACAGTAGTACAGTTTTAG</gDNA_template>
            <first_frame> L  Q  P  S  K  E  S  V  T  *  K  L  H  I  F  P  L  L  *  A  F  I  F  S  T  E  S  K  F  T  T  A  I  A  K  F  R  G  N  F  R  S  S  M  K  K  S  T  V  S  P  T  S  V  L  F  V  V  A  A  I  L  I  S  Y  Y  S  D  V  S  S  A  K  S  D  S  D  P  T  P  A  P  W  P  H  Q  F  H  S  I  L  F  V  N  F  S  G  S  L  S  L  I  D  L  W  Y  D  W  T  N  G  R  N  F  N  I  I  Q  D  Q  L   : G  E  L  L  Y  D  L  E  W  N  N  G  T  V  F  R  Y  T  L  D  D  G  K  K  K  C  S  S  A  L  V  D  V  G  I  L  R  P  N  W  L  D  G  A  T  Y  L  G  Q  Q  F  I  D  G  F  H  C  N  V  W  Q  K  V  D  F  I  W  Y  Y  E  D  I  V  T  K  R  P  V  H  W  V  F  Y  T   : G  R  S  I  H  V  M  T  F  E  V  G  A  V  L  E  D  I  K  W  Q  A  P  V  Y  C  F  D  K  K  Q  V  Q  D  H  P  A  S  D  N  D  I  L  E  I  G  S  K  G  T  L  R  E  F  I  *  P  R  N  L  R  K  *  L  S  *  M  F  L  V  M  *  K  Y  L  P  C  L  A  A  S  A  S  V  S  S  P  Y  V  L  K  N  S  *  C  H  Q  C  C  V  L  Q  *  P  M  L  L  E  L  F  I  N  G  D  G  V  C  R  I  L  Q  Q  *  Y  S  F   </first_frame>
            <second_frame>  Y  N  H  P  K  R  V  S  L  K  N  Y  T  F  F  P  F  F  E  P  L  S  S  P  Q  R  A  N  L  Q  P  P  S  Q  N  F  E  E  I  S  G  R  V  *  R  R  V  R  C  R  R  R  L  Y  Y  S  L  L  P  Q  Y  *  F  L  T  T  P  M  S  R  R  Q  N  Q  I  Q  T  Q  R  R  L  H  G  L  I  N  S  T  R  Y  C  S  S  I  S  A  D  L  *  A  *  S  I  S  G  T  I  G  P  M  A  A  I  S  T  S  Y  K  T  S  *  :  V  S  F  S  M  I  S  N  G  T  M  A  L  C  S  A  T  L  *  T  M  V  R  R  N  A  V  Q  R  W  L  M  L  V  F  F  D  Q  I  G  L  T  E  L  L  I  L  V  N  S  S  S  M  D  F  T  V  M  Y  G  R  R  W  I  S  F  G  I  M  K  T  S  S  Q  R  D  P  S  I  G  F  S  I  L  :  E  G  L  F  T  *  *  L  S  K  W  E  Q  F  S  R  T  *  N  G  K  P  L  Y  I  V  S  T  K  N  R  F  K  I  T  L  H  Q  T  T  I  F  W  K  L  A  R  K  V  L  *  E  S  S  Y  S  R  A  I  Y  V  N  S  S  A  R  C  S  *  *  C  K  S  I  C  L  V  L  L  P  L  H  Q  F  H  L  L  M  Y  *  K  T  V  D  A  I  S  V  V  Y  C  N  N  L  C  C  S  N  C  S  *  M  V  M  G  Y  V  G  S  S  N  S  S  T  V  L  </second_frame>
            <third_frame>   T  T  I  Q  R  E  C  H  L  K  T  T  H  F  S  P  S  L  S  L  Y  L  L  H  R  E  Q  I  Y  N  R  H  R  K  I  S  R  K  F  Q  V  E  Y  E  E  E  Y  G  V  A  D  V  C  T  I  R  C  C  R  N  T  N  F  L  L  L  R  C  L  V  G  K  I  R  F  R  P  N  A  G  S  M  A  S  S  I  P  L  D  T  V  R  Q  F  Q  R  I  S  K  P  N  R  S  L  V  R  L  D  Q  W  P  Q  F  Q  H  H  T  R  P  A  R :   *  A  S  L  *  S  R  M  E  Q  W  H  C  V  P  L  H  S  R  R  W  *  E  E  M  Q  F  S  A  G  *  C  W  Y  S  S  T  K  L  A  *  R  S  Y  L  S  W  S  T  V  H  R  W  I  S  L  *  C  M  A  E  G  G  F  H  L  V  L  *  R  H  R  H  K  E  T  R  P  L  G  F  L  Y  W :   K  V  Y  S  R  N  D  F  R  S  G  S  S  S  R  G  H  K  M  A  S  P  C  I  L  F  R  Q  K  T  G  S  R  S  P  C  I  R  Q  R  Y  S  G  N  W  L  E  R  Y  F  K  R  V  H  I  A  A  Q  F  T  *  I  A  Q  L  D  V  L  S  N  V  K  V  F  A  L  S  C  C  L  C  I  S  F  I  S  L  C  I  E  K  Q  L  M  P  S  V  L  C  I  A  I  T  Y  V  A  R  T  V  H  K  W  *  W  G  M  S  D  P  P  T  V  V  Q  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58362" stop="58056"/>
                    <exon start="56841" stop="56590"/>
                    <exon start="54728" stop="54562"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFIFSTESKFTTAIAKFRGNFRSSMKKSTVSPTSVLFVVAAILISYYSDVSSAKSDSDPTPAPWPHQFHSILFVNFSGSLSLIDLWYDWTNGRNFNIIQDQLGELLYDLEWNNGTVFRYTLDDGKKKCSSALVDVGILRPNWLDGATYLGQQFIDGFHCNVWQKVDFIWYYEDIVTKRPVHWVFYTGRSIHVMTFEVGAVLEDIKWQAPVYCFDKKQVQDHPASDNDILEIGSKGTLREFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="61368" PGL_stop="63501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61368" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="62112"/>
            <exon e_start="63187" e_stop="63501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="61368" e_stop="61461" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62084" e_stop="62112" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.955">
            <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="63187" e_stop="63501" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61368" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACAT : AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAC</gDNA_template>
            <first_frame> N  H  T  A  S  S  V  F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  :  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  H  S  G  F  *  I  Y  A  M  Y  *  I  F  V  V  P  H </first_frame>
            <second_frame>  T  I  P  L  P  A  S  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F  T  L  D  F  E  F  M  L  C  I  R  S  L  L  C  L   </second_frame>
            <third_frame>   P  Y  R  F  Q  R  L  H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T   : *  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N  S  L  W  I  L  N  L  C  Y  V  L  D  L  C  C  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61369" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62112"/>
                    <exon start="63187" stop="63313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIPLPASSSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61387" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="63451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="0.971"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="61387" e_stop="61461" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="62084" e_stop="63451" e_length="1368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61387" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="63451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTC</gDNA_template>
            <first_frame> S  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  M  *  V  F  L  F  V  H  L  S  *  F  G  A  F  D  L  N  L  V  I  F  R  T  K  Y  *  Y  L  K  L  R  Y  G  *  W  R  S  K  V  D  E  F  S  D  I  W  N  V  V  V  F  E  I  E  K  W  *  Y  L  K  I  K  V  D  Q  L  S  D  I  L  E  L  R  K  S  R  I  F  E  V  E  I  W  L  M  E  K  *  S  R  *  I  *  *  Y  L  E  R  C  S  V  *  D  *  R  M  I  F  E  N  *  S  *  S  T  W  *  Y  F  Q  T  *  K  K  *  Y  S  *  S  *  D  M  V  N  G  K  *  S  *  S  I  *  *  Y  F  R  I  *  K  K  E  V  Y  L  K  L  K  Y  S  I  W  *  L  K  L  G  K  K  *  S  *  R  M  V  D  D  K  *  S  *  *  I  H  *  Y  P  I  I  S  S  I  *  S  W  K  T  S  *  E  N  S  S  L  K  F  I  R  K  I  I  L  I  Y  T  T  K  E  *  L  K  C  F  L  Y  K  R  K  R  T  S  P  N  R  V  G  S  A  *  *  T  S  *  L  T  S  V  E  R  L  Y  N  *  P  R  *  L  L  T  E  S  R  K  Y  M  N  T  T  *  I  F  E  E  G  P  E  L  G  S  V  *  *  T  S  *  L  T  S  E  E  V  I  Y  E  F  F  C  *  A  K  I  V  V  A  Y  G  K  *  K  V  Y  E  H  E  L  N  L  *  G  K  D  L  S  L  V  Q  F  R  F  D  P  Q  *  H  L  S  Y  *  F  L  S  Y  K  Y  N  *  D  R  F  S  V  S  F  S  L  Y  V  C  R  T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F </first_frame>
            <second_frame>  L  H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T  C  K  F  F  F  L  F  I  Y  L  S  L  V  L  L  T  *  I  *  *  Y  L  E  P  S  T  D  I  *  S  *  D  M  V  N  G  E  V  K  L  M  N  L  V  I  F  G  T  *  *  Y  L  R  L  K  N  G  S  I  *  K  L  K  L  I  N  L  V  I  F  *  N  L  E  K  V  E  Y  L  K  L  R  Y  G  *  W  R  S  K  V  D  E  F  S  D  I  W  N  V  V  A  F  E  I  E  E  *  Y  L  K  I  E  V  D  Q  L  G  N  I  F  K  L  R  K  S  S  I  V  E  V  K  I  W  L  M  E  S  K  V  D  Q  F  S  D  I  L  E  F  R  K  K  K  Y  I  *  S  *  N  I  V  F  G  D  *  S  L  E  K  S  R  V  E  E  W  L  M  I  S  K  V  D  E  F  I  N  I  P  *  *  V  V  F  E  A  G  K  Q  V  R  R  T  H  P  *  N  L  S  E  K  S  F  *  F  I  Q  P  K  N  N  *  N  A  F  C  I  K  G  N  E  L  L  Q  T  E  L  V  V  L  D  E  P  V  S  *  R  L  *  R  D  Y  I  I  N  Q  D  S  C  L  R  K  V  E  S  I  *  T  R  P  E  S  L  R  K  D  L  S  *  V  V  F  D  E  P  V  S  *  R  L  K  R  L  Y  M  N  S  S  V  K  P  R  *  *  S  P  T  E  S  R  K  Y  M  N  T  N  *  I  F  E  V  R  T  *  V  W  F  S  S  D  L  T  L  N  N  I  F  H  I  S  F  C  R  T  N  I  T  R  I  A  S  Q  S  L  S  L  Y  M  C  A  E  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N   </second_frame>
            <third_frame>   F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  V  S  F  S  F  C  S  F  I  L  V  W  C  F  *  L  E  F  S  D  I  *  N  Q  V  L  I  F  E  V  E  I  W  L  M  E  K  *  S  *  *  I  *  *  Y  L  E  R  S  S  I  *  D  *  K  M  V  V  F  E  N  *  S  *  S  T  *  *  Y  F  R  T  *  K  K  *  N  I  *  S  *  D  M  V  N  G  E  V  K  S  M  N  L  V  I  F  G  T  L  *  R  L  R  L  K  N  D  I  *  K  L  K  L  I  N  L  V  I  F  S  N  L  E  K  V  V  *  L  K  L  R  Y  G  *  W  K  V  K  L  I  N  L  V  I  F  *  N  L  E  K  R  S  I  F  E  V  E  I  *  Y  L  V  I  K  A  W  K  K  V  E  L  K  N  G  *  *  *  V  K  L  M  N  S  L  I  S  H  N  K  *  Y  L  K  L  E  N  K  L  G  E  L  I  L  E  I  Y  P  K  N  H  S  N  L  Y  N  Q  R  I  I  K  M  L  F  V  *  K  E  T  N  F  S  K  Q  S  W  *  C  L  M  N  Q  L  V  D  V  C  R  E  I  I  *  L  T  K  I  V  A  Y  G  K  *  K  V  Y  E  H  D  L  N  L  *  G  R  T  *  V  R  *  C  L  M  N  Q  L  V  D  V  *  R  G  Y  I  *  I  L  L  L  S  Q  D  S  S  R  L  R  K  V  E  S  I  *  T  R  T  E  S  L  R  *  G  P  E  F  G  S  V  P  I  *  P  S  I  T  S  F  I  L  V  S  V  V  Q  I  *  L  G  S  L  L  S  L  F  L  S  I  C  V  Q  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63078" stop="63329"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFSSDLTLNNIFHISFCRTNITRIASQSLSLYMCAEQRCSATRRLLWFAVTARRSCASQLVGVLDSPRVVLSGEREIREEQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61387" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="65410" PGL_stop="67712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65410" e_stop="65500"/>
            <exon e_start="66453" e_stop="66554"/>
            <exon e_start="66644" e_stop="66672"/>
            <exon e_start="67320" e_stop="67712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.901" e_score="0.988"/>
          <exon-intron don_prob="0.732" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="65410" e_stop="65500" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.901">
            <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66453" e_stop="66554" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.880">
            <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66644" e_stop="66672" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67320" e_stop="67712" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65410" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65415" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG : GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTTAACAT : AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTT</gDNA_template>
            <first_frame> N  I  S  S  S  V  F  I  S  A  A  S  D  A  L  P  P  S  P  P  A  G  I  S  R  L  P  R  E  N   : G  S  S  K  R  C  R  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  *  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  *  H  :  N  N  G  V  Q  P  L  A  N  C  G  G  V  R  E  L  S  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  *  Q  A  I  I  C  F  *  S  G  K  L  K  K  F  I  W  V  T  K  S  V  L  V  Y  P  G  F  S  F  F  D  L  L  K  N  K  G  F  L  V  Y  H  V  W  F  C  Y  V  F  Q  L  N  W  V  S  I  H  L  W  I  L  N  F  A  I  Y  *  L  Y  V  L  P  T  I  F  P  S  I  T  L  K  Y  L  I  D  V </first_frame>
            <second_frame>  I  S  L  P  A  S  S  F  Q  L  P  P  T  L  F  L  P  R  R  R  P  E  F  P  V  Y  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  S  N  R  Q  L  F  A  F  R  V  G  S  *  K  S  L  Y  G  *  Q  S  Q  F  W  C  I  L  A  F  P  F  L  I  F  *  R  T  K  D  F  *  F  T  M  S  G  F  V  M  F  F  N  *  I  G  F  R  F  T  Y  G  F  *  I  L  L  Y  I  S  S  M  F  Y  L  Q  Y  S  H  Q  L  L  *  S  T  *  *  M   </second_frame>
            <third_frame>   Y  L  F  Q  R  L  H  F  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  P  F  T  S  R  K  W :   F  F  Q  T  M  S  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  L  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  L  T   : *  Q  R  C  S  A  T  R  K  L  W  W  C  A  G  T  V  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  V  T  G  N  Y  L  L  L  E  W  E  V  K  K  V  Y  M  G  N  K  V  S  F  G  V  S  W  L  F  L  F  *  S  F  K  E  Q  R  I  F  S  L  P  C  L  V  L  L  C  F  S  I  K  L  G  F  D  S  L  M  D  F  E  F  C  Y  I  L  A  L  C  S  T  Y  N  I  P  I  N  Y  F  E  V  L  D  R  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65411" stop="65500"/>
                    <exon start="66453" stop="66554"/>
                    <exon start="66644" stop="66672"/>
                    <exon start="67320" stop="67446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISLPASSFQLPPTLFLPRRRPEFPVYLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66644" e_stop="67373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="66644" e_stop="67373" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66644" stop="67373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGAC</gDNA_template>
            <first_frame> D  V  K  C  Q  G  C  F  N  M  *  V  H  F  F  L  F  I  Y  L  S  W  C  F  R  Y  E  F  S  D  I  R  E  K  K  I  V  I  E  V  V  K  W  L  W  R  S  *  V  D  E  F  S  D  A  *  V  I  V  I  E  V  E  K  C  Y  L  K  K  *  S  *  Y  L  *  *  N  L  K  *  K  S  S  I  *  M  *  K  W  *  S  N  I  I  V  W  K  K  I  *  L  L  S  *  V  M  F  N  L  C  L  G  Y  I  S  L  C  Y  K  L  P  T  S  F  G  *  K  N  R  P  A  S  F  M  *  F  G  E  L  I  L  K  I  *  Q  K  S  H  S  N  V  Y  K  P  N  K  F  L  C  T  F  *  I  N  G  N  N  F  H  V  H  S  K  K  *  N  F  M  H  T  N  R  M  F  S  E  G  W  W  D  I  Q  S  S  S  W  F  S  F  N  L  T  C  N  N  I  S  L  V  I  Q  *  Y  V  H  P  K  S  Y  S  L  S  I  C  A  E  Q  R  C  S  A  T  R  K  L  W  W  C  A  G  T  V  R  </first_frame>
            <second_frame>  M  *  S  A  R  V  A  L  T  C  K  F  I  F  F  C  S  F  I  L  V  G  A  F  D  M  N  L  V  T  L  G  K  R  K  *  *  L  K  L  *  N  G  Y  G  E  V  K  L  M  N  L  V  M  L  K  *  *  *  L  K  L  K  N  V  I  *  K  N  E  V  D  I  F  S  E  I  *  N  K  K  V  V  F  E  C  K  N  G  N  R  T  L  *  F  G  K  K  Y  S  F  *  V  E  *  C  L  T  C  V  W  D  T  F  H  F  V  I  S  S  L  L  L  L  A  E  K  T  G  Q  L  V  L  C  S  L  G  N  S  S  *  K  F  N  R  K  V  I  L  M  Y  I  N  L  T  S  F  Y  V  L  F  E  *  M  E  T  I  F  M  S  I  V  K  S  R  I  L  C  T  L  T  E  C  F  R  K  D  G  G  I  S  N  P  H  L  G  S  V  S  T  S  P  A  I  T  S  L  L  S  Y  N  D  M  F  T  L  S  L  I  L  S  L  Y  V  Q  N  N  G  V  Q  P  L  A  N  C  G  G  V  R  E  L  S  D </second_frame>
            <third_frame>   C  E  V  P  G  L  L  *  H  V  S  S  F  F  F  V  H  L  S  *  L  V  L  S  I  *  I  *  *  H  *  G  K  E  N  S  D  *  S  C  K  M  V  M  E  K  L  S  *  *  I  *  *  C  L  S  N  S  N  *  S  *  K  M  L  F  E  K  M  K  L  I  S  L  V  K  F  E  I  K  K  *  Y  L  N  V  K  M  V  I  E  H  Y  S  L  E  K  N  I  A  F  K  L  S  N  V  *  L  V  F  G  I  H  F  T  L  L  *  A  P  Y  F  F  W  L  K  K  Q  A  S  *  F  Y  V  V  W  G  T  H  P  K  N  L  T  E  K  S  F  *  C  I  *  T  *  Q  V  F  M  Y  F  L  N  K  W  K  Q  F  S  C  P  *  *  K  V  E  F  Y  A  H  *  P  N  V  F  G  R  M  V  G  Y  P  I  L  I  L  V  Q  F  Q  P  H  L  Q  *  H  L  S  C  H  T  M  I  C  S  P  *  V  L  F  S  L  Y  M  C  R  T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67134" stop="67373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>METIFMSIVKSRILCTLTECFRKDGGISNPHLGSVSTSPAITSLLSYNDMFTLSLILSLYVQNNGVQPLANCGGVRELSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="75444" PGL_stop="68468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75444" e_stop="75225"/>
            <exon e_start="73529" e_stop="73463"/>
            <exon e_start="72968" e_stop="72844"/>
            <exon e_start="71959" e_stop="71851"/>
            <exon e_start="71774" e_stop="71711"/>
            <exon e_start="71625" e_stop="71570"/>
            <exon e_start="70437" e_stop="70330"/>
            <exon e_start="69859" e_stop="69710"/>
            <exon e_start="69289" e_stop="69119"/>
            <exon e_start="68866" e_stop="68468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.536" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75444" e_stop="75225" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73529" e_stop="73463" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.682" acc_prob="0.974">
            <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72968" e_stop="72844" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.891">
            <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71959" e_stop="71851" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.536" acc_prob="0.980">
            <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71774" e_stop="71711" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.876">
            <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71625" e_stop="71570" e_length="56"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70437" e_stop="70330" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69859" e_stop="69710" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.929">
            <gDNA_intron_boundary i_start="69709" i_stop="69290" i_length="420"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69289" e_stop="69119" e_length="171"/>
          </exon>
          <intron i_serial="9" don_prob="0.856" acc_prob="0.988">
            <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252"/>
          </intron>
          <exon e_serial="10" e_score="0.980">
            <gDNA_exon_boundary e_start="68866" e_stop="68468" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75444" stop="75225"/>
              <exon start="73529" stop="73463"/>
              <exon start="72968" stop="72844"/>
              <exon start="71959" stop="71851"/>
              <exon start="71774" stop="71711"/>
              <exon start="71625" stop="71570"/>
              <exon start="70437" stop="70330"/>
              <exon start="69859" stop="69710"/>
              <exon start="69289" stop="69119"/>
              <exon start="68866" stop="68468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAG : ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG : GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA : GGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA : GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG : GAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG : GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGG : GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTG : ATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG : GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTTGTAACTGGTAAGTGGTA</gDNA_template>
            <first_frame> L  Q  *  T  A  S  L  L  P  R  R  I  G  D  V  R  R  R  F  R  S  T  P  I  P  L  N  S  T  I  G  A  A  S  A  S  T  P  E  T  G  T  P  A  E  S  D  A  T  *  K  L  P  A  A  A  T  I  S  R  K  Q  V  P  E  S  S  Y  I  E  I  L  R   : D  Y  L  Q  R  Q  *  S  N  L  K  I  G  E  V  H  R  T  G  M  K  S  R :   E  H  G  Y  C  N  Q  K  H  Q  S  R  S  *  S  Y  I  L  L  E  V  F  L  L  G  L  L  R  S  F  L  T  A  C  S  L  S  G  S  D  R   : R  M  S  W  *  L  L  H  L  M  L  V  D  L  T  I  S  T  L  Q  M  K  C  S  L  S  L  I  G  A  L  D  F  S  K  K  E :   Y  K  T  F  L  Y  L  A  L  G  T  L  *  D  L  *  F  T  F  *  L  :  E  L  D  M  L  *  K  E  T  G  M  Y  *  W  L  S  T  T  R :   M  P  A  L  Q  C  R  C  S  H  L  F  L  F  Q  *  C  K  T  *  D  Q  F  Y  H  R  S  H  H  H  Q  P  F  V  L  G :   R  R  *  L  *  S  K  *  R  T  L  A  P  Q  S  *  S  K  F  F  H  W  L  S  N  *  L  L  Y  T  R  T  *  L  M  E  K  K  I  S  L  Q  D  Q  K  K  L  K  D  * :   *  G  P  T  T  G  F  R  G  I  S  *  L  S  S  K  M  I  Q  S  T  K  L  Q  H  *  L  R  C  S  A  Q  V  P  P  S  A  Q  C  W  I  C  L  S  A  L  F  L  E  T  M  R  F  L  Y  S  R :   L  Y  Q  M  L  L  Q  E  *  R  T  L  L  T  G  A  A  S  Y  W  R  T  *  Q  Q  E  R  H  G  K  T  S  R  R  K  S  A  I  R  S  V  M  *  T  L  *  F  L  I  L  G  I  Q  R  T  W  I  C  L  W  R  Q  *  H  H  G  C  T  L  T  L  A  Q  N  F  Y  S  D  I  C  *  K  K  Y  M  Y  M  N  P  T  E  W  F  C  N  L  *  *  L  Y  I  L  D  *  H  L  V  L  M  Y  N  N  V  T  N  F  L  N  V  L  V  *  K  G  Q  L  F  V  T  G  K  W   </first_frame>
            <second_frame>  C  N  E  L  R  H  C  S  Q  G  E  L  A  M  F  A  G  D  F  V  L  L  R  F  H  *  T  L  Q  S  E  Q  H  P  L  L  R  R  K  P  E  L  Q  Q  N  Q  M  Q  L  E  S  Y  R  Q  Q  Q  Q  S  A  G  N  K  Y  R  N  P  A  I  *  R  Y  *  E  :  I  T  Y  R  D  S  E  A  I  S  R  L  G  K  F  T  G  L  G  *  N  R   : G  S  M  G  I  A  T  K  N  I  K  A  E  V  S  R  T  F  Y  W  R  C  F  C  W  G  C  S  A  A  F  L  P  P  V  P  *  A  A  Q  T  E  :  G  C  L  G  D  C  Y  T  L  C  *  W  I  *  P  F  L  H  C  R  *  S  A  V  *  V  *  *  V  P  *  I  S  P  R  K   : S  T  R  P  S  C  I  W  H  W  A  L  F  R  I  C  N  S  P  F  D  W :   S  *  I  C  C  E  K  K  R  E  C  I  D  G  F  Q  Q  Q   : G  C  Q  P  C  S  A  V  V  L  I  C  S  C  S  N  D  A  K  L  R  T  S  F  I  T  D  R  I  I  T  N  H  S  S  W   : G  G  D  D  Y  E  A  N  R  E  P  *  P  L  N  H  E  A  S  F  S  T  G  *  A  T  D  S  S  I  H  G  L  D  *  W  K  R  K  F  H  S  K  T  R  R  N  S  K  T   : D  K  V  L  L  R  D  F  E  E  S  L  S  *  V  Q  R  *  Y  N  R  R  N  F  N  T  S  S  G  A  Q  L  R  F  R  H  Q  L  N  A  G  Y  V  Y  P  H  S  S  W  R  P  C  A  S  S  T  A   : G  S  T  K  C  S  S  R  N  D  G  R  C  *  Q  E  Q  R  A  I  G  E  L  D  S  R  N  A  M  G  K  R  H  E  G  S  R  Q  Y  A  R  *  C  R  L  Y  N  S  *  F  W  E  F  K  G  L  G  Y  A  C  G  D  N  N  I  M  D  V  L  *  H  W  P  K  T  F  T  V  I  Y  A  K  K  N  I  C  I  *  T  L  L  N  G  S  V  I  C  N  D  C  I  Y  L  I  D  I  *  Y  S  C  I  I  M  *  L  T  F  *  M  F  W  Y  K  K  V  N  Y  L  *  L  V  S  G  </second_frame>
            <third_frame>   A  M  N  C  V  T  A  P  K  A  N  W  R  C  S  P  A  I  S  F  Y  S  D  S  T  K  L  Y  N  R  S  S  I  R  F  Y  A  G  N  R  N  S  S  R  I  R  C  N  L  K  A  T  G  S  S  N  N  Q  P  E  T  S  T  G  I  Q  L  Y  R  D  I  E  R :   L  L  T  E  T  V  K  Q  S  Q  D  W  G  S  S  Q  D  W  D  E  I  E  :  G  A  W  V  L  Q  P  K  T  S  K  P  K  L  V  V  H  F  I  G  G  V  F  V  G  A  A  P  Q  L  S  Y  R  L  F  L  E  R  L  R  Q  K :   D  V  L  V  I  A  T  P  Y  A  S  G  F  D  H  F  Y  I  A  D  E  V  Q  F  K  F  D  R  C  L  R  F  L  Q  E  R  :  V  Q  D  L  P  V  F  G  I  G  H  S  L  G  S  V  I  H  L  L  I   : G  A  R  Y  A  V  K  R  N  G  N  V  L  M  A  F  N  N  K  :  D  A  S  L  A  V  P  L  F  S  S  V  L  V  P  M  M  Q  N  L  G  P  V  L  S  Q  I  A  S  S  P  T  I  R  L  G  :  A  E  M  T  M  K  Q  I  E  N  L  S  P  S  I  M  K  Q  V  F  P  L  V  E  Q  L  T  P  L  Y  T  D  L  I  N  G  K  E  N  F  T  P  R  P  E  E  T  Q  R  L  :  I  R  S  Y  Y  G  I  S  R  N  L  L  V  K  F  K  D  D  T  I  D  E  T  S  T  L  A  Q  V  L  S  S  G  S  A  I  S  S  M  L  D  M  S  I  R  T  L  P  G  D  H  A  L  P  L  Q  Q  :  A  L  P  N  A  P  P  G  M  T  D  A  V  N  R  S  S  E  L  L  A  N  L  T  A  G  T  P  W  E  N  V  T  K  E  V  G  N  T  L  G  N  V  D  S  I  I  L  N  S  G  N  S  K  D  L  D  M  L  V  E  T  I  T  S  W  M  Y  S  N  T  G  P  K  L  L  Q  *  Y  M  L  K  K  I  Y  V  Y  E  P  Y  *  M  V  L  *  F  V  M  I  V  Y  T  *  L  T  F  S  T  H  V  *  *  C  D  *  L  F  E  C  F  G  I  K  R  S  I  I  C  N  W  *  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75442" stop="75225"/>
                    <exon start="73529" stop="73463"/>
                    <exon start="72968" stop="72844"/>
                    <exon start="71959" stop="71851"/>
                    <exon start="71774" stop="71711"/>
                    <exon start="71625" stop="71570"/>
                    <exon start="70437" stop="70330"/>
                    <exon start="69859" stop="69710"/>
                    <exon start="69289" stop="69119"/>
                    <exon start="68866" stop="68633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMNCVTAPKANWRCSPAISFYSDSTKLYNRSSIRFYAGNRNSSRIRCNLKATGSSNNQPETSTGIQLYRDIERLLTETVKQSQDWGSSQDWDEIEGAWVLQPKTSKPKLVVHFIGGVFVGAAPQLSYRLFLERLRQKDVLVIATPYASGFDHFYIADEVQFKFDRCLRFLQERVQDLPVFGIGHSLGSVIHLLIGARYAVKRNGNVLMAFNNKDASLAVPLFSSVLVPMMQNLGPVLSQIASSPTIRLGAEMTMKQIENLSPSIMKQVFPLVEQLTPLYTDLINGKENFTPRPEETQRLIRSYYGISRNLLVKFKDDTIDETSTLAQVLSSGSAISSMLDMSIRTLPGDHALPLQQALPNAPPGMTDAVNRSSELLANLTAGTPWENVTKEVGNTLGNVDSIILNSGNSKDLDMLVETITSWMYSNTGPKLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75162" e_stop="74830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="75162" e_stop="74830" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75162" stop="74830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600398" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTT</gDNA_template>
            <first_frame> F  R  F  S  *  F  C  E  I  K  W  F  D  *  I  C  C  L  L  F  F  C  V  C  L  V  *  L  V  F  Y  R  A  K  L  T  C  S  I  S  G  M  T  K  A  A  I  S  F  H  L  F  *  S  *  L  T  E  L  P  I  L  L  V  G  G  S  K  Y  *  V  E  L  V  K  C  V  I  I  K  K  I  *  H  G  K  Y  S  L  C  S  T  L  C  G  I  I  Q  R  S  E  I  F  *  F  L  V  C  N  *  L </first_frame>
            <second_frame>  L  D  F  P  D  F  V  K  L  S  G  L  I  E  Y  A  A  F  Y  F  S  V  S  A  W  C  N  L  S  S  I  E  Q  N  *  H  V  Q  F  P  A  *  Q  K  R  R  Y  L  F  I  C  S  S  L  S  *  Q  S  Y  P  Y  Y  W  *  E  V  V  N  I  E  W  N  *  S  S  A  L  *  *  K  R  F  S  M  E  S  T  L  S  V  P  L  Y  V  A  *  F  R  D  L  K  Y  F  N  F  W  C  V  I  N   </second_frame>
            <third_frame>   *  I  F  L  I  L  *  N  *  V  V  *  L  N  M  L  P  F  I  F  L  C  L  L  G  V  T  C  L  L  S  S  K  I  N  M  F  N  F  R  H  D  K  S  G  D  I  F  S  F  V  L  V  L  A  N  R  V  T  H  I  I  G  R  R  *  *  I  L  S  G  I  S  Q  V  R  Y  N  K  K  D  L  A  W  K  V  L  S  L  F  H  F  M  W  H  N  S  E  I  *  N  I  L  I  F  G  V  *  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="84641" PGL_stop="76445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84641" e_stop="84577"/>
            <exon e_start="84397" e_stop="84257"/>
            <exon e_start="82948" e_stop="82589"/>
            <exon e_start="81924" e_stop="81766"/>
            <exon e_start="80863" e_stop="80783"/>
            <exon e_start="78904" e_stop="78809"/>
            <exon e_start="78655" e_stop="78515"/>
            <exon e_start="78435" e_stop="78292"/>
            <exon e_start="77357" e_stop="77250"/>
            <exon e_start="76951" e_stop="76900"/>
            <exon e_start="76807" e_stop="76445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.847" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84641" e_stop="84577" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84576" i_stop="84398" i_length="179"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84397" e_stop="84257" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.760" acc_prob="0.880">
            <gDNA_intron_boundary i_start="84256" i_stop="82949" i_length="1308"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="82948" e_stop="82589" e_length="360"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.847">
            <gDNA_intron_boundary i_start="82588" i_stop="81925" i_length="664"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81924" e_stop="81766" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="80863" e_stop="80783" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.919" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78904" e_stop="78809" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78655" e_stop="78515" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78435" e_stop="78292" e_length="144"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77357" e_stop="77250" e_length="108"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76951" e_stop="76900" e_length="52"/>
          </exon>
          <intron i_serial="10" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="76807" e_stop="76445" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84641" stop="84577"/>
              <exon start="84397" stop="84257"/>
              <exon start="82948" stop="82589"/>
              <exon start="81924" stop="81766"/>
              <exon start="80863" stop="80783"/>
              <exon start="78904" stop="78809"/>
              <exon start="78655" stop="78515"/>
              <exon start="78435" stop="78292"/>
              <exon start="77357" stop="77250"/>
              <exon start="76951" stop="76900"/>
              <exon start="76807" stop="76445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84384" stop="84257"/>
              <exon start="82948" stop="82589"/>
              <exon start="81924" stop="81766"/>
              <exon start="80863" stop="80851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCGCAATTTGTTCTTCAATTTTGCGGTCGAAGATTGGCGCAATTTCATCAACTAATTCAAT : CGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGAGGAATTGATTTAGCTATTTTTACTCAAAGTTTGGATTTTTGAAGCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAG : TTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCG : ATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG : CATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGT : GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG : ATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG : ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG : GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG : ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTCAT</gDNA_template>
            <first_frame> L  F  A  I  C  S  S  I  L  R  S  K  I  G  A  I  S  S  T  N  S  I :   G  D  S  W  F  V  W  K  Y  S  R  R  N  *  F  S  Y  F  Y  S  K  F  G  F  L  K  Q  K  G  R  R  I  N  C  N  N  V  E  Y  V  S  I  D  L  E  L  S :   F  T  G  M  R  Q  V  *  G  K  S  H  V  M  N  S  C  F  M  H  V  L  L  Q  Y  *  Q  A  L  H  I  C  L  E  E  F  N  L  L  K  S  G  D  I  L  E  D  E  L  L  H  M  L  E  L  E  S  R  F  *  L  V  S  G  *  N  *  H  L  T  S  V  V  V  I  I  L  F  Y  G  S  F  I  P  F  Q  *  *  R  K  T  E  M  V  S  L  L  L  R  K  E  I  L  L  E  Y  T  E  T  W  V  T  A  R  L  K  S  D  P  R :   Y  V  I  L  R  L  V  C  I  K  A  T  P  C  Q  R  T  R  R  N  I  F  Y  L  V  D  L  K  M  H  Y  I  L  S  E  L  Q  I  *  L  K  V  S  L  G  L  *  Y  H  A  L  F  S :   I  N  L  L  P  K  V  E  R  L  S  I  R  R  R  R  G  L  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  L  L  L  Q  M  I  P  *  E  S  I  S  S  *  N  L  L  R  V  T  S  K  L  Y  H  P  V :   F  M  L  L  E  *  R  K  L  I  V  V  I  L  S  S  G  L  V  L  L  N  L  M  V  L  Q  K  E  T  Q  D  K  L  V  Q  E  L  *  Y  E  L  T  M  E  V  * :   S  V  G  C  V  K  V  *  E  *  Q  Q  P  V  L  L  N  I  E  A  L  S  W  V  *  N  M  H  I  A  K  G  L  Q  V  F  V  L  R  V  I  P  N  L  F  V  C  R :   S  R  V  Y  G  K  L  K  I  K  T  S  L  R  Y  F  S  R  Q  N  N  *  R  I  G  F  F  L  S  A  S  F  M  F  F  G :   N  L  T  V  T  R  I  S  R  R  T  W  L  L  N  F  Q  :  M  V  M  S  R  R  R  *  R  N  D  K  R  G  C  R  R  R  L  *  T  W  C  *  R  R  S  H  R  A  N  H  R  A  S  R  F  A  C  K  S  V  D  S  T  I  C  F  Y  L  K  L  E  D  R  *  G  N  *  L  M  R  I  V  S  S  Y  D  T  V  I  Y  L  T  C  T  I  S  I  A  I  C  V  *  *  R  I  S  C  I  F  *  Q  I  V  I  I  L  S  T  M  S  I  S  T  L  L  L  Y  R  S  G  *  K  Q  M  L  S  P  F  H </first_frame>
            <second_frame>  S  S  Q  F  V  L  Q  F  C  G  R  R  L  A  Q  F  H  Q  L  I  Q   : S  E  I  L  G  L  F  G  N  T  V  G  G  I  D  L  A  I  F  T  Q  S  L  D  F  *  S  K  R  E  E  E  S  T  V  T  M  L  S  M  L  V  L  I  W  N  *   : V  L  Q  E  C  V  K  S  E  E  S  P  M  *  *  I  L  V  S  C  M  F  C  C  N  I  D  K  H  Y  I  S  A  L  K  S  S  I  C  *  S  L  V  I  S  W  R  M  S  F  C  T  C  L  N  *  K  V  D  F  D  L  F  L  D  R  I  S  I  *  Q  V  *  W  *  *  F  S  F  T  E  V  L  S  R  S  N  N  E  G  R  Q  R  W  F  L  C  C  *  E  R  R  Y  C  W  S  I  Q  K  L  G  *  L  P  D  S  S  R  I  L   : D  M  *  S  S  G  *  C  V  *  R  L  L  H  A  K  G  H  G  G  I  S  S  I  L  W  T  *  K  C  I  I  F  Y  Q  S  C  R  S  D  *  K  S  L  W  G  S  S  T  M  P  F  S   : A  S  I  F  F  Q  R  W  S  V  *  A  Y  A  E  E  E  V  S  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  C  C  F  K  *  F  P  K  K  A  Y  Q  V  R  T  S  *  G  *  P  A  S  S  I  I  R   : C  L  C  C  W  N  E  G  S  *  S  W  L  S  S  A  A  V  L  Y  S  *  I  *  W  Y  F  K  R  K  P  R  T  S  W  C  R  S  C  S  T  S  *  R  W  K  F   : D  L  *  A  A  *  R  F  R  N  S  N  N  Q  C  C  *  I  S  R  L  Y  L  G  F  E  I  C  T  *  Q  R  V  Y  K  Y  S  C  S  G  *  F  Q  T  C  L  Y  A   : D  P  G  S  M  E  S  *  K  S  K  H  L  Y  A  I  S  A  G  K  T  T  K  G  *  V  F  F  F  P  H  H  S  C  S  S   : G  I  *  L  *  R  G  S  A  G  E  L  G  Y  *  T  S  R :   W  S  C  P  G  G  D  R  E  M  T  N  G  A  V  D  D  D  S  K  R  G  A  N  E  D  L  I  V  L  T  T  E  H  R  V  L  P  V  S  Q  W  I  A  Q  Y  V  F  T  *  N  S  K  T  D  E  G  T  D  *  C  E  S  Y  R  A  M  I  R  *  F  I  *  L  V  L  L  V  S  Q  Y  A  C  N  N  E  F  H  A  S  F  D  R  L  *  *  F  *  V  Q  *  V  L  V  L  Y  Y  Y  I  E  V  A  K  S  R  C  S  L  R  F   </second_frame>
            <third_frame>   L  R  N  L  F  F  N  F  A  V  E  D  W  R  N  F  I  N  *  F  N  :  R  R  F  L  V  C  L  E  I  Q  *  E  E  L  I  *  L  F  L  L  K  V  W  I  F  E  A  K  G  K  K  N  Q  L  *  Q  C  *  V  C  *  Y  *  S  G  I  K  :  F  Y  R  N  A  S  S  L  R  K  V  P  C  N  E  F  L  F  H  A  C  F  V  A  I  L  T  S  T  T  Y  L  P  *  R  V  Q  F  V  E  V  W  *  Y  L  G  G  *  A  F  A  H  A  *  I  R  K  S  I  L  T  C  F  W  I  E  L  A  S  N  K  C  S  G  D  N  S  L  L  R  K  F  Y  P  V  P  I  M  K  E  D  R  D  G  F  F  V  V  K  K  G  D  I  V  G  V  Y  R  N  L  G  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  S  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  S  L  F  G  A  L  V  P  C  P  F  Q  :  H  Q  S  S  S  K  G  G  A  S  E  H  T  P  K  K  R  S  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  V  V  A  S  N  D  S  L  R  K  H  I  K  L  E  P  P  K  G  D  Q  Q  A  L  S  S  G  :  V  Y  A  V  G  M  K  E  A  D  R  G  Y  P  Q  Q  R  S  C  T  L  E  F  D  G  T  S  K  G  N  P  G  Q  A  G  A  G  A  V  V  R  A  D  D  G  S  L  :  I  C  R  L  R  E  G  L  G  I  A  T  T  S  V  A  E  Y  R  G  F  I  L  G  L  K  Y  A  H  S  K  G  F  T  S  I  R  A  Q  G  D  S  K  L  V  C  M  Q  :  I  Q  G  L  W  K  V  K  N  Q  N  I  S  T  L  F  Q  Q  A  K  Q  L  K  D  R  F  F  S  F  R  I  I  H  V  L  R  :  E  S  N  C  D  A  D  Q  Q  A  N  L  A  I  E  L  P   : D  G  H  V  Q  E  E  I  E  K  *  Q  T  G  L  *  T  T  T  L  N  V  V  L  T  K  I  S  S  C  *  P  P  S  I  A  F  C  L  *  V  S  G  *  H  N  M  F  L  P  E  T  R  R  P  M  R  E  L  I  D  A  N  R  I  E  L  *  Y  G  N  L  F  N  L  Y  Y  *  Y  R  N  M  R  V  I  T  N  F  M  H  L  L  T  D  C  N  N  F  K  Y  N  E  Y  *  Y  F  T  T  I  *  K  W  L  K  A  D  A  L  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82786" stop="82589"/>
                    <exon start="81924" stop="81766"/>
                    <exon start="80863" stop="80783"/>
                    <exon start="78904" stop="78809"/>
                    <exon start="78655" stop="78515"/>
                    <exon start="78435" stop="78292"/>
                    <exon start="77357" stop="77250"/>
                    <exon start="76951" stop="76900"/>
                    <exon start="76807" stop="76776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRKSILTCFWIELASNKCSGDNSLLRKFYPVPIMKEDRDGFFVVKKGDIVGVYRNLGDCQTQVGSSICDPPVSVYKGYSMPKDTEEYLLSCGLKNALYSIRAADLTESLFGALVPCPFQHQSSSKGGASEHTPKKRSQEAMWSEYADAVGSVVASNDSLRKHIKLEPPKGDQQALSSGVYAVGMKEADRGYPQQRSCTLEFDGTSKGNPGQAGAGAVVRADDGSLICRLREGLGIATTSVAEYRGFILGLKYAHSKGFTSIRAQGDSKLVCMQIQGLWKVKNQNISTLFQQAKQLKDRFFSFRIIHVLRESNCDADQQANLAIELPDGHVQEEIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83589" e_stop="82850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="83589" e_stop="82850" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="82850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCT</gDNA_template>
            <first_frame> L  T  C  G  I  T  V  G  L  L  L  L  L  I  F  S  T  M  G  K  K  G  I  L  F  P  F  *  F  V  L  S  D  F  T  L  T  V  L  K  N  I  E  D  L  L  N  L  T  V  I  S  *  R  Y  V  D  V  P  K  M  L  L  N  L  *  F  W  T  C  H  V  E  G  *  N  *  G  V  A  K  K  G  T  R  H  S  F  *  N  G  L  K  G  K  V  R  *  T  N  *  N  G  G  S  I  L  F  E  N  R  A  E  Y  G  L  F  I  G  C  V  W  Y  Q  Y  D  E  S  H  F  P  *  *  L  F  F  L  V  S  G  Y  Q  K  N  V  F  L  Q  K  R  K  *  L  P  *  *  E  V  F  S  V  Q  L  N  F  *  R  H  V  S  *  S  N  *  H  L  L  T  H  V  S  C  Y  N  I  W  G  I  Y  V  Y  T  C  M  H  G  S  F  E  L  K  N  *  R  K  L  F  C  V  F  L  L  F  S  F  T  G  M  R  Q  V  *  G  K  S  H  V  M  N  S  C  F  M  H  V  L  L  Q  Y  *  Q  A  L  H  I  C   </first_frame>
            <second_frame>  S  L  V  G  *  Q  W  V  C  C  Y  C  *  Y  S  Q  P  W  E  K  K  E  Y  S  F  R  F  N  L  F  Y  L  I  S  L  *  Q  C  *  K  I  *  K  T  F  *  I  L  R  S  *  A  K  D  M  *  M  Y  Q  K  C  F  *  T  C  D  F  G  H  V  T  W  K  V  R  I  K  E  L  L  K  K  E  R  G  I  L  F  E  M  D  *  K  G  K  *  D  K  Q  I  E  M  E  E  V  Y  C  L  K  I  E  Q  N  M  D  F  L  L  A  V  F  G  I  S  M  M  K  V  I  F  H  N  N  C  F  F  *  F  L  V  T  K  K  M  F  F  F  K  R  G  N  D  F  P  D  K  K  Y  F  P  Y  N  *  T  F  S  V  M  F  L  D  P  T  N  T  C  *  H  M  F  H  V  T  I  F  G  E  F  M  Y  I  H  A  C  M  V  H  L  S  *  K  I  K  E  S  F  F  V  F  S  Y  F  L  V  L  Q  E  C  V  K  S  E  E  S  P  M  *  *  I  L  V  S  C  M  F  C  C  N  I  D  K  H  Y  I  S  A  </second_frame>
            <third_frame>   H  L  W  D  N  S  G  F  V  V  I  V  D  I  L  N  H  G  K  K  R  N  T  L  S  V  L  I  C  F  I  *  F  H  F  D  S  V  K  K  Y  R  R  P  F  E  S  Y  G  H  K  L  K  I  C  R  C  T  K  N  A  F  K  L  V  I  L  D  M  S  R  G  R  L  E  L  R  S  C  *  K  R  N  E  A  F  F  L  K  W  T  K  R  E  S  K  I  N  K  L  K  W  R  K  Y  I  V  *  K  *  S  R  I  W  T  F  Y  W  L  C  L  V  S  V  *  *  K  S  F  S  I  I  I  V  F  S  S  F  W  L  P  K  K  C  F  S  S  K  E  E  M  T  S  L  I  R  S  I  F  R  T  T  K  L  L  A  S  C  F  L  I  Q  L  T  L  V  N  T  C  F  M  L  Q  Y  L  G  N  L  C  I  Y  M  H  A  W  F  I  *  V  K  K  L  K  K  A  F  L  C  F  L  T  F  *  F  Y  R  N  A  S  S  L  R  K  V  P  C  N  E  F  L  F  H  A  C  F  V  A  I  L  T  S  T  T  Y  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83209" stop="82994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFSIIIVFSSFWLPKKCFSSKEEMTSLIRSIFRTTKLLASCFLIQLTLVNTCFMLQYLGNLCIYMHAWFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="93325" PGL_stop="91393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93325" e_stop="93270"/>
            <exon e_start="93117" e_stop="93060"/>
            <exon e_start="92424" e_stop="92386"/>
            <exon e_start="91543" e_stop="91393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93325" e_stop="93270" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.941">
            <gDNA_intron_boundary i_start="93269" i_stop="93118" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93117" e_stop="93060" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.973">
            <gDNA_intron_boundary i_start="93059" i_stop="92425" i_length="635"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92424" e_stop="92386" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92385" i_stop="91544" i_length="842"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91543" e_stop="91393" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93325" stop="93270"/>
              <exon start="93117" stop="93060"/>
              <exon start="92424" stop="92386"/>
              <exon start="91543" stop="91393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTGAAGATGGATGATTTTGGGAACAATATCATCAAAAATATAATAAGAACTC : TTATTATGGCTCCGGTGTATACTACAGCCGGATATTTTGCATACAGAACTGGACGCTG : GTTCTATAATGAAGAGATGAGGAGACTTGATATAATAAG : CTCTAACGAGGCGCGACGACGGAGAGAACAAAGGATTAAAGATAAACCACCTAAACGGTTTTTTTGGTTCTGGTGATTGCTTGTTTTTAATAATATAATGTAAAACCATCATGATTTAAATTCAAAAATTTAATTATATGTATTCAAGTTT</gDNA_template>
            <first_frame> L  S  E  D  G  *  F  W  E  Q  Y  H  Q  K  Y  N  K  N  S :   Y  Y  G  S  G  V  Y  Y  S  R  I  F  C  I  Q  N  W  T  L  :  V  L  *  *  R  D  E  E  T  *  Y  N  K  :  L  *  R  G  A  T  T  E  R  T  K  D  *  R  *  T  T  *  T  V  F  L  V  L  V  I  A  C  F  *  *  Y  N  V  K  P  S  *  F  K  F  K  N  L  I  I  C  I  Q  V  </first_frame>
            <second_frame>  S  L  K  M  D  D  F  G  N  N  I  I  K  N  I  I  R  T   : L  I  M  A  P  V  Y  T  T  A  G  Y  F  A  Y  R  T  G  R  W :   F  Y  N  E  E  M  R  R  L  D  I  I  S :   S  N  E  A  R  R  R  R  E  Q  R  I  K  D  K  P  P  K  R  F  F  W  F  W  *  L  L  V  F  N  N  I  M  *  N  H  H  D  L  N  S  K  I  *  L  Y  V  F  K  F </second_frame>
            <third_frame>   L  *  R  W  M  I  L  G  T  I  S  S  K  I  *  *  E  L  :  L  L  W  L  R  C  I  L  Q  P  D  I  L  H  T  E  L  D  A   : G  S  I  M  K  R  *  G  D  L  I  *  *   : A  L  T  R  R  D  D  G  E  N  K  G  L  K  I  N  H  L  N  G  F  F  G  S  G  D  C  L  F  L  I  I  *  C  K  T  I  M  I  *  I  Q  K  F  N  Y  M  Y  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93324" stop="93270"/>
                    <exon start="93117" stop="93060"/>
                    <exon start="92424" stop="92386"/>
                    <exon start="91543" stop="91468"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKMDDFGNNIIKNIIRTLIMAPVYTTAGYFAYRTGRWFYNEEMRRLDIISSNEARRRREQRIKDKPPKRFFWFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="98323" PGL_stop="102331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98323" e_stop="98847"/>
            <exon e_start="101506" e_stop="102331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98323" e_stop="98847" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.976">
            <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101506" e_stop="102331" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98323" stop="98847"/>
              <exon start="101506" stop="102331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGCGATGGGTGCAACCACCGTGAACGGCGGCGATTCAGAATCGACATCACTGTTAACTCCTTCAAATCCTAAAATTCCGAAGGACAGTTTCCACATAGCTTACATAATCTACTTTACTCTCGGTGCCGGTTATCTACTCCCATGGAACGCATTCATCACCGCCGTCGATTACTTCAGTTACCTTTACCCGGACGTTATGGTAGATCGTATCTTTGCCATTGTTTACATGATCGTCGGATTGATCGGTTTGCTTTTCATTGTTGCTTTTTCTAATAAGACTAGTGCTTTTGTTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGCCGGTTTTGGTGTTACTGTTGGTTTGGTTGGAATTTGTGGAATTGCTGATGCGTTGGTTCAGGGTGGAGTTGTTGGAGCTGCCGGTGAGTTGCCGGAACGGTATATGCAGGCCACTTTCGCCGGAACTGCTGCTTCTG : GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGACTAACGGCTACCTGACTAGTTTGTTAATGATCTTGGGTCCAAAAACTGTCCAACTGCAACACGCAGAGATAGCTGGGACCTTACTCGTTTTGTTCTTGGTGATGGGTCTGGCAATTGGTTCCGTTGTATCATGGTTCTGGATTATATAGTTTCTCAGCAGCTTGTAAGATATCCGTTCCCCGTAAAACCTATTGCTACTCAAAAACTGTGAAAACTTATTTATTCATGCCATTTCAAATGTTTATTT</gDNA_template>
            <first_frame> R  R  W  V  Q  P  P  *  T  A  A  I  Q  N  R  H  H  C  *  L  L  Q  I  L  K  F  R  R  T  V  S  T  *  L  T  *  S  T  L  L  S  V  P  V  I  Y  S  H  G  T  H  S  S  P  P  S  I  T  S  V  T  F  T  R  T  L  W  *  I  V  S  L  P  L  F  T  *  S  S  D  *  S  V  C  F  S  L  L  L  F  L  I  R  L  V  L  L  L  G  L  M  L  E  C  F  Y  L  W  L  R  L  L  R  C  R  *  W  M  C  F  M  W  M  G  E  L  E  C  M  P  V  L  V  L  L  L  V  W  L  E  F  V  E  L  L  M  R  W  F  R  V  E  L  L  E  L  P  V  S  C  R  N  G  I  C  R  P  L  S  P  E  L  L  L  L  :  V  Y  L  F  R  C  *  E  F  *  P  K  L  Y  I  H  K  M  L  M  G  *  E  R  V  Q  T  F  I  L  F  S  A  L  L  *  *  F  C  A  *  S  F  T  I  L  H  I  G  F  Q  *  L  S  T  T  M  I  L  K  L  R  Q  *  T  R  R  K  R  I  R  A  T  *  L  Q  N  Y  G  D  Q  L  W  T  F  L  G  L  *  N  G  M  V  L  A  L  S  V  F  M  W  S  P  C  L  Y  F  P  D  I  S  Q  K  T  C  I  L  N  F  *  R  I  G  I  R  S  C  *  L  L  A  T  M  C  L  I  W  W  G  S  L  *  L  L  Y  Y  F  L  M  M  P  R  L  L  L  V  P  A  S  Q  G  C  C  F  C  L  Y  S  T  F  A  Y  M  G  L  N  S  L  G  R  S  F  L  S  Q  Y  *  P  V  Y  W  D  *  L  T  A  T  *  L  V  C  *  *  S  W  V  Q  K  L  S  N  C  N  T  Q  R  *  L  G  P  Y  S  F  C  S  W  *  W  V  W  Q  L  V  P  L  Y  H  G  S  G  L  Y  S  F  S  A  A  C  K  I  S  V  P  R  K  T  Y  C  Y  S  K  T  V  K  T  Y  L  F  M  P  F  Q  M  F  I  </first_frame>
            <second_frame>  G  D  G  C  N  H  R  E  R  R  R  F  R  I  D  I  T  V  N  S  F  K  S  *  N  S  E  G  Q  F  P  H  S  L  H  N  L  L  Y  S  R  C  R  L  S  T  P  M  E  R  I  H  H  R  R  R  L  L  Q  L  P  L  P  G  R  Y  G  R  S  Y  L  C  H  C  L  H  D  R  R  I  D  R  F  A  F  H  C  C  F  F  *  *  D  *  C  F  C  *  D  *  C  W  N  V  F  I  C  G  C  A  C  Y  G  A  V  D  G  C  V  L  C  G  W  E  S  W  S  V  C  R  F  W  C  Y  C  W  F  G  W  N  L  W  N  C  *  C  V  G  S  G  W  S  C  W  S  C  R  *  V  A  G  T  V  Y  A  G  H  F  R  R  N  C  C  F  W :   C  T  C  F  V  A  K  N  F  N  Q  S  C  I  S  T  R  C  *  W  A  E  K  E  C  K  P  L  F  Y  F  Q  H  C  C  D  D  S  V  H  S  L  L  Q  Y  C  T  *  A  S  N  N  *  V  L  Q  *  S  *  N  S  G  S  E  R  G  E  R  G  *  G  R  L  N  S  R  I  M  E  I  N  S  G  H  F  W  D  C  E  M  V  W  F  W  H  C  Q  S  L  C  G  H  L  V  Y  I  S  R  I  Y  H  R  R  R  A  F  S  T  S  E  G  L  V  S  D  L  V  D  Y  W  L  Q  C  V  *  S  G  G  E  V  S  D  S  C  I  I  F  *  *  C  Q  G  C  Y  W  C  L  L  R  K  V  V  V  F  A  S  I  L  R  L  L  T  W  A  *  I  L  *  D  G  A  S  C  H  N  T  N  L  F  T  G  I  D  *  R  L  P  D  *  F  V  N  D  L  G  S  K  N  C  P  T  A  T  R  R  D  S  W  D  L  T  R  F  V  L  G  D  G  S  G  N  W  F  R  C  I  M  V  L  D  Y  I  V  S  Q  Q  L  V  R  Y  P  F  P  V  K  P  I  A  T  Q  K  L  *  K  L  I  Y  S  C  H  F  K  C  L  F </second_frame>
            <third_frame>   A  M  G  A  T  T  V  N  G  G  D  S  E  S  T  S  L  L  T  P  S  N  P  K  I  P  K  D  S  F  H  I  A  Y  I  I  Y  F  T  L  G  A  G  Y  L  L  P  W  N  A  F  I  T  A  V  D  Y  F  S  Y  L  Y  P  D  V  M  V  D  R  I  F  A  I  V  Y  M  I  V  G  L  I  G  L  L  F  I  V  A  F  S  N  K  T  S  A  F  V  R  I  N  V  G  M  F  L  F  V  V  A  L  V  T  V  P  L  M  D  V  F  Y  V  D  G  R  V  G  V  Y  A  G  F  G  V  T  V  G  L  V  G  I  C  G  I  A  D  A  L  V  Q  G  G  V  V  G  A  A  G  E  L  P  E  R  Y  M  Q  A  T  F  A  G  T  A  A  S   : G  V  L  V  S  L  L  R  I  L  T  K  A  V  Y  P  Q  D  A  N  G  L  R  K  S  A  N  L  Y  F  I  F  S  I  A  V  M  I  L  C  I  V  F  Y  N  I  A  H  R  L  P  I  I  K  Y  Y  N  D  L  K  T  Q  A  V  N  E  E  K  E  D  K  G  D  L  T  P  E  L  W  R  S  T  L  D  I  F  G  T  V  K  W  Y  G  F  G  I  V  S  L  Y  V  V  T  L  S  I  F  P  G  Y  I  T  E  D  V  H  S  Q  L  L  K  D  W  Y  P  I  L  L  I  T  G  Y  N  V  F  D  L  V  G  K  S  L  T  P  V  L  F  F  D  D  A  K  V  A  I  G  A  C  F  A  R  L  L  F  L  P  L  F  Y  V  C  L  H  G  P  E  F  F  R  T  E  L  P  V  T  I  L  T  C  L  L  G  L  T  N  G  Y  L  T  S  L  L  M  I  L  G  P  K  T  V  Q  L  Q  H  A  E  I  A  G  T  L  L  V  L  F  L  V  M  G  L  A  I  G  S  V  V  S  W  F  W  I  I  *  F  L  S  S  L  *  D  I  R  S  P  *  N  L  L  L  L  K  N  C  E  N  L  F  I  H  A  I  S  N  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98325" stop="98847"/>
                    <exon start="101506" stop="102233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMGATTVNGGDSESTSLLTPSNPKIPKDSFHIAYIIYFTLGAGYLLPWNAFITAVDYFSYLYPDVMVDRIFAIVYMIVGLIGLLFIVAFSNKTSAFVRINVGMFLFVVALVTVPLMDVFYVDGRVGVYAGFGVTVGLVGICGIADALVQGGVVGAAGELPERYMQATFAGTAASGVLVSLLRILTKAVYPQDANGLRKSANLYFIFSIAVMILCIVFYNIAHRLPIIKYYNDLKTQAVNEEKEDKGDLTPELWRSTLDIFGTVKWYGFGIVSLYVVTLSIFPGYITEDVHSQLLKDWYPILLITGYNVFDLVGKSLTPVLFFDDAKVAIGACFARLLFLPLFYVCLHGPEFFRTELPVTILTCLLGLTNGYLTSLLMILGPKTVQLQHAEIAGTLLVLFLVMGLAIGSVVSWFWII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="102936" PGL_stop="102620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102936" e_stop="102620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102936" e_stop="102620" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102936" stop="102620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCA</gDNA_template>
            <first_frame> E  *  L  Q  K  Q  L  R  *  L  *  *  T  W  L  L  K  Q  L  E  Y  E  D  L  P  V  T  M  V  P  G  V  *  R  *  T  K  N  P  P  L  N  L  K  *  A  I  F  V  I  L  K  K  G  G  P  *  E  E  E  H  Q  G  I  I  E  D  H  L  R  L  P  S  N  C  *  E  Y  I  P  C  C  I  I  C  T  L  Y  *  S  V  I  Y  F  S  F  Q  S  V  P  K  R  I  S  Y   </first_frame>
            <second_frame>  N  N  C  K  N  N  *  D  D  Y  N  R  L  G  C  *  S  S  *  N  T  R  I  F  Q  *  R  W  F  P  G  F  E  G  K  R  R  I  L  H  *  I  S  S  K  R  Y  S  *  Y  *  R  K  V  G  L  K  K  K  N  I  K  A  S  S  K  I  I  F  D  C  Q  V  I  V  E  S  T  F  L  V  V  S  Y  V  L  S  I  K  V  *  Y  T  F  L  F  N  L  F  Q  K  E  Y  R  I  </second_frame>
            <third_frame>   I  T  A  K  T  T  E  M  I  I  I  D  L  V  A  E  A  A  R  I  R  G  S  S  S  N  D  G  S  R  G  L  K  V  N  E  E  S  S  I  E  S  Q  V  S  D  I  R  D  I  K  E  R  W  A  L  R  R  R  T  S  R  H  H  R  R  S  S  S  I  A  K  *  L  L  R  V  H  S  L  L  Y  H  M  Y  S  L  L  K  C  D  I  L  F  F  S  I  C  S  K  K  N  I  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102934" stop="102716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITAKTTEMIIIDLVAEAARIRGSSSNDGSRGLKVNEESSIESQVSDIRDIKERWALRRRTSRHHRRSSSIAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="107197" PGL_stop="103139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107197" e_stop="107072"/>
            <exon e_start="105498" e_stop="105358"/>
            <exon e_start="105271" e_stop="105119"/>
            <exon e_start="104693" e_stop="104571"/>
            <exon e_start="104409" e_stop="104266"/>
            <exon e_start="103165" e_stop="103139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.992" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="107197" e_stop="107072" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107071" i_stop="105499" i_length="1573"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105498" e_stop="105358" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105271" e_stop="105119" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.971">
            <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104693" e_stop="104571" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104570" i_stop="104410" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="104409" e_stop="104266" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.891" acc_prob="0.992">
            <gDNA_intron_boundary i_start="104265" i_stop="103166" i_length="1100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103165" e_stop="103139" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107197" stop="107072"/>
              <exon start="105498" stop="105358"/>
              <exon start="105271" stop="105119"/>
              <exon start="104693" stop="104571"/>
              <exon start="104409" stop="104266"/>
              <exon start="103165" stop="103139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGTAAAATGAACTTCTTCATATAACAAACTCAAAAAACGGAACGCCACTCAAATTAACAATCAAAATGCACAAATTCTCAGCAATTTCTCAACTTGTTAAGCTTTGGATTTGAAGTATTTTTTAG : GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG : TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG : GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAG : GAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTGGTCAGGAACAATATCTGTTCATGTATTAGTCGACCAAAACAGAGAAGACTACACG : ATGAAGTTCAAGCAAGTGAAAACTGGA</gDNA_template>
            <first_frame> T  *  N  E  L  L  H  I  T  N  S  K  N  G  T  P  L  K  L  T  I  K  M  H  K  F  S  A  I  S  Q  L  V  K  L  W  I  *  S  I  F  *  :  V  L  I  S  S  M  K  T  E  G  Q  G  I  E  I  L  E  N  T  S  N  V  H  N  R  L  P  R  P  M  I  Q  S  I  F  S  G  F  Q  E  K  V  Q  E  C  V  K  :  S  N  F  K  R  L  K  I  A  H  D  K  S  I  T  R  G  N  N  K  G  A  T  L  V  I  D  V  D  K  E  K  Q  L  Q  S  W  K  E  N  P  S  W  V  D  P  P  P  Y  V  K  :  V  S  V  P  K  G  S  L  C  N  L  N  V  K  V  N  I  G  L  P  P  D  T  V  F  D  I  V  T  D  P  E  N  R  R  V  F  K  N  I  K  :  E  V  L  S  R  K  V  L  V  D  E  G  S  R  Q  V  V  E  L  D  Q  A  A  I  W  K  F  L  W  W  S  G  T  I  S  V  H  V  L  V  D  Q  N  R  E  D  Y  T  :  M  K  F  K  Q  V  K  T  G </first_frame>
            <second_frame>  R  K  M  N  F  F  I  *  Q  T  Q  K  T  E  R  H  S  N  *  Q  S  K  C  T  N  S  Q  Q  F  L  N  L  L  S  F  G  F  E  V  F  F  R :   F  *  L  V  Q  *  R  R  R  V  R  E  *  K  Y  W  R  T  R  A  M  Y  I  I  D  C  L  V  Q  *  S  S  L  F  S  Q  D  S  R  K  R  S  K  S  V  L  S :   Q  I  S  K  D  *  K  S  L  M  I  N  Q  S  R  E  V  I  T  K  E  Q  L  *  S  *  M  W  I  K  R  S  N  Y  N  L  G  K  R  T  R  V  G  L  I  P  R  H  M  *  R :   *  V  Y  P  K  V  L  F  V  T  *  M  *  K  L  I  L  D  S  P  Q  I  P  C  L  T  L  *  P  T  L  K  I  D  E  S  S  R  I  S  R :   K  Y  Y  R  G  R  C  W  L  M  K  V  Q  G  K  *  W  N  *  T  K  P  L  Y  G  N  F  F  G  G  Q  E  Q  Y  L  F  M  Y  *  S  T  K  T  E  K  T  T  R :   *  S  S  S  K  *  K  L   </second_frame>
            <third_frame>   V  K  *  T  S  S  Y  N  K  L  K  K  R  N  A  T  Q  I  N  N  Q  N  A  Q  I  L  S  N  F  S  T  C  *  A  L  D  L  K  Y  F  L   : G  S  D  *  F  N  E  D  G  G  S  G  N  R  N  T  G  E  H  E  Q  C  T  *  *  I  A  S  S  N  D  P  V  Y  F  L  R  I  P  G  K  G  P  R  V  C  *   : V  K  F  Q  K  I  E  N  R  S  *  *  I  N  H  E  R  *  *  Q  R  S  N  F  S  H  R  C  G  *  R  E  A  I  T  I  L  E  R  E  P  E  L  G  *  S  P  A  I  C  K   : G  K  C  T  Q  R  F  S  L  *  P  E  C  E  S  *  Y  W  T  P  P  R  Y  R  V  *  H  C  N  R  P  *  K  *  T  S  L  Q  E  Y  Q   : G  S  I  I  A  E  G  V  G  *  *  R  F  K  A  S  S  G  T  R  P  S  R  Y  M  E  I  S  L  V  V  R  N  N  I  C  S  C  I  S  R  P  K  Q  R  R  L  H   : D  E  V  Q  A  S  E  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105498" stop="105358"/>
                    <exon start="105271" stop="105119"/>
                    <exon start="104693" stop="104571"/>
                    <exon start="104409" stop="104266"/>
                    <exon start="103165" stop="103139"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLISSMKTEGQGIEILENTSNVHNRLPRPMIQSIFSGFQEKVQECVKSNFKRLKIAHDKSITRGNNKGATLVIDVDKEKQLQSWKENPSWVDPPPYVKVSVPKGSLCNLNVKVNIGLPPDTVFDIVTDPENRRVFKNIKEVLSRKVLVDEGSRQVVELDQAAIWKFLWWSGTISVHVLVDQNREDYTMKFKQVKTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106380" e_stop="106150"/>
            <exon e_start="105498" e_stop="105358"/>
            <exon e_start="105271" e_stop="105119"/>
            <exon e_start="104693" e_stop="104571"/>
            <exon e_start="104409" e_stop="104321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.976"/>
          <exon-only e_score="0.854"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106380" e_stop="106150" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106149" i_stop="105499" i_length="651"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105498" e_stop="105358" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105271" e_stop="105119" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.971">
            <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="104693" e_stop="104571" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104570" i_stop="104410" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="0.854">
            <gDNA_exon_boundary e_start="104409" e_stop="104321" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106380" stop="106150"/>
              <exon start="105498" stop="105358"/>
              <exon start="105271" stop="105119"/>
              <exon start="104693" stop="104571"/>
              <exon start="104409" stop="104321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGCAACATAAGCTGTTTTTTTCAAGAGTTTGCTTTAGAAATTTGAGTTGTTTGGCCAAAGTTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGA : GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG : TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG : GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAG : GAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTG</gDNA_template>
            <first_frame> S  S  N  I  S  C  F  F  Q  E  F  A  L  E  I  *  V  V  W  P  K  F  *  F  A  R  G  V  I  *  Q  R  P  E  S  W  L  S  L  L  *  E  H  V  D  S  K  R  F  C  F  S  N  F  K  I  E  R  R  N  P  *  K  T  A  S  P  V  D  M  V  N  L  S  Q  D  *  :  V  L  I  S  S  M  K  T  E  G  Q  G  I  E  I  L  E  N  T  S  N  V  H  N  R  L  P  R  P  M  I  Q  S  I  F  S  G  F  Q  E  K  V  Q  E  C  V  K  :  S  N  F  K  R  L  K  I  A  H  D  K  S  I  T  R  G  N  N  K  G  A  T  L  V  I  D  V  D  K  E  K  Q  L  Q  S  W  K  E  N  P  S  W  V  D  P  P  P  Y  V  K  :  V  S  V  P  K  G  S  L  C  N  L  N  V  K  V  N  I  G  L  P  P  D  T  V  F  D  I  V  T  D  P  E  N  R  R  V  F  K  N  I  K  :  E  V  L  S  R  K  V  L  V  D  E  G  S  R  Q  V  V  E  L  D  Q  A  A  I  W  K  F  L  W   </first_frame>
            <second_frame>  V  A  T  *  A  V  F  F  K  S  L  L  *  K  F  E  L  F  G  Q  S  F  S  L  L  A  A  L  F  D  R  D  Q  K  V  G  S  L  Y  F  K  S  M  L  I  P  K  D  F  V  F  P  T  S  K  S  K  E  G  I  R  E  R  L  H  L  L  L  I  W  *  I  C  L  K  I  E :   F  *  L  V  Q  *  R  R  R  V  R  E  *  K  Y  W  R  T  R  A  M  Y  I  I  D  C  L  V  Q  *  S  S  L  F  S  Q  D  S  R  K  R  S  K  S  V  L  S :   Q  I  S  K  D  *  K  S  L  M  I  N  Q  S  R  E  V  I  T  K  E  Q  L  *  S  *  M  W  I  K  R  S  N  Y  N  L  G  K  R  T  R  V  G  L  I  P  R  H  M  *  R :   *  V  Y  P  K  V  L  F  V  T  *  M  *  K  L  I  L  D  S  P  Q  I  P  C  L  T  L  *  P  T  L  K  I  D  E  S  S  R  I  S  R :   K  Y  Y  R  G  R  C  W  L  M  K  V  Q  G  K  *  W  N  *  T  K  P  L  Y  G  N  F  F  G  </second_frame>
            <third_frame>   *  Q  H  K  L  F  F  S  R  V  C  F  R  N  L  S  C  L  A  K  V  L  V  C  S  R  R  Y  L  T  E  T  R  K  L  A  L  F  T  L  R  A  C  *  F  Q  K  I  L  F  F  Q  L  Q  N  R  K  K  E  S  V  K  D  C  I  S  C  *  Y  G  E  F  V  S  R  L   : S  S  D  *  F  N  E  D  G  G  S  G  N  R  N  T  G  E  H  E  Q  C  T  *  *  I  A  S  S  N  D  P  V  Y  F  L  R  I  P  G  K  G  P  R  V  C  *   : V  K  F  Q  K  I  E  N  R  S  *  *  I  N  H  E  R  *  *  Q  R  S  N  F  S  H  R  C  G  *  R  E  A  I  T  I  L  E  R  E  P  E  L  G  *  S  P  A  I  C  K   : G  K  C  T  Q  R  F  S  L  *  P  E  C  E  S  *  Y  W  T  P  P  R  Y  R  V  *  H  C  N  R  P  *  K  *  T  S  L  Q  E  Y  Q   : G  S  I  I  A  E  G  V  G  *  *  R  F  K  A  S  S  G  T  R  P  S  R  Y  M  E  I  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105498" stop="105358"/>
                    <exon start="105271" stop="105119"/>
                    <exon start="104693" stop="104571"/>
                    <exon start="104409" stop="104323"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLISSMKTEGQGIEILENTSNVHNRLPRPMIQSIFSGFQEKVQECVKSNFKRLKIAHDKSITRGNNKGATLVIDVDKEKQLQSWKENPSWVDPPPYVKVSVPKGSLCNLNVKVNIGLPPDTVFDIVTDPENRRVFKNIKEVLSRKVLVDEGSRQVVELDQAAIWKFLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="112455" PGL_stop="108396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112455" e_stop="112364"/>
            <exon e_start="111652" e_stop="111483"/>
            <exon e_start="110504" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112455" e_stop="112364" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111652" e_stop="111483" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.970">
            <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110504" e_stop="110434" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110157" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109064" e_stop="108946" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="108701" e_stop="108396" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112455" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577562" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCGTTATTCTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG : GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG : GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTC</gDNA_template>
            <first_frame> R  V  I  L  K  L  S  L  S  L  S  L  S  Q  F  S  C  F  L  S  L  D  P  S  L  P  K  L  F  F  R :   D  R  *  E  E  R  E  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  K  L  G  E  I  V  T  T  I  P  T  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  *  N  A  Y  Q  I  P  *  Y  K  N  Y  C  G  I  K  N  F </first_frame>
            <second_frame>  A  L  F  S  S  S  L  S  L  S  L  S  L  N  S  R  A  F  S  H  *  I  P  L  C  P  S  C  S  S   : G  I  V  K  K  K  E  K  W  G  *  H  S  P  S  F  S  A  G  Y  L  P  R  R  K  C  A  S  S  W  L  D  S  M  Q  L  V  R  P  P  Y  C  T  S  S  S  W  E  K  S  S  P  P  F  Q  L  L  :  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F  K  M  H  I  K  Y  H  N  I  K  T  T  V  V  L  K  I   </second_frame>
            <third_frame>   R  Y  S  Q  A  L  S  L  S  L  S  L  S  I  L  V  L  S  L  T  R  S  L  F  A  Q  A  V  L  Q  :  G  S  L  R  R  K  R  N  G  V  D  I  H  Q  A  F  Q  P  A  I  C  Q  E  G  N  A  H  P  H  G  W  T  R  C  S  W  *  D  H  H  I  V  Q  A  Q  A  G  R  N  R  H  H  H  S  N  Y  W :   F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N  L  K  C  I  S  N  T  I  I  *  K  L  L  W  Y  *  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111642" stop="111483"/>
                    <exon start="110504" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEREMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111385" e_stop="110762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="111385" e_stop="110762" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111385" stop="110762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAAC</gDNA_template>
            <first_frame> K  D  E  P  I  A  S  *  N  R  K  K  R  K  W  G  *  G  K  W  K  R  G  E  G  V  T  R  W  G  I  N  P  C  Q  S  P  T  M  *  K  F  R  Y  L  T  N  *  A  T  Q  L  P  K  R  K  T  N  L  S  S  Y  Q  K  K  K  K  R  L  N  L  S  F  *  *  G  D  R  K  G  A  *  N  *  Y  Y  N  C  P  S  T  F  T  V  C  C  N  *  L  V  C  Y  N  L  V  I  L  R  C  L  S  S  F  C  Q  S  R  E  S  N  V  *  S  G  A  C  G  P  *  S  K  *  L  F  *  T  F  K  Y  V  I  F  D  A  N  V  K  A  P  K  K  K  L  R  L  S  V  L  *  K  Y  L  C  L  R  Q  L  C  P  F  G  S  L  M  N  I  I  F  K  N  I  D  *  D  Y  I  F  W  *  N  N  T  N  T  N  P  P  P  P  H  L  L  H  R  *  E  *  N </first_frame>
            <second_frame>  K  M  N  L  L  L  L  K  T  E  K  K  E  N  G  D  R  G  S  G  K  G  G  R  G  L  Q  G  G  E  S  T  L  A  S  H  Q  Q  C  E  S  L  G  T  *  P  T  E  L  L  S  C  P  K  E  R  L  T  Y  L  L  I  K  K  K  K  R  D  L  T  Y  H  F  D  K  E  T  E  K  V  H  R  T  S  T  I  T  V  P  L  L  L  L  F  A  A  I  D  *  F  V  I  T  *  S  S  F  V  V  S  V  L  S  V  N  P  G  K  A  M  F  N  Q  G  H  A  V  L  N  Q  N  N  Y  F  E  L  L  N  M  L  S  L  M  Q  M  *  R  L  L  K  R  S  L  D  Y  Q  C  C  R  N  T  C  V  *  D  S  Y  V  L  L  D  H  S  *  I  S  F  L  R  I  L  T  K  T  T  F  S  G  E  I  T  Q  T  Q  I  P  P  P  P  T  F  C  T  G  K  S  E   </second_frame>
            <third_frame>   R  *  T  Y  C  F  L  K  Q  K  K  K  K  M  G  I  G  E  V  E  K  G  G  G  G  Y  K  V  G  N  Q  P  L  P  V  T  N  N  V  K  V  *  V  P  N  Q  L  S  Y  S  V  A  Q  K  K  D  *  P  I  F  L  S  K  K  K  K  E  T  *  P  I  I  L  I  R  R  Q  K  R  C  I  E  L  V  L  *  L  S  L  Y  F  Y  C  L  L  Q  L  I  S  L  L  *  L  S  H  P  S  L  S  Q  F  F  L  S  I  Q  G  K  Q  C  L  I  R  G  M  R  S  L  I  K  I  I  I  L  N  F  *  I  C  Y  L  *  C  K  C  K  G  S  *  K  E  A  *  I  I  S  V  V  E  I  P  V  F  E  T  A  M  S  F  W  I  T  H  E  Y  H  F  *  E  Y  *  L  R  L  H  F  L  V  K  *  H  K  H  K  S  P  P  P  P  P  F  A  Q  V  R  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112412" e_stop="112364"/>
            <exon e_start="111652" e_stop="111533"/>
            <exon e_start="111381" e_stop="111370"/>
            <exon e_start="110504" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.000" acc_prob="0.190" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="0.667"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="112412" e_stop="112364" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111652" e_stop="111533" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.190">
            <gDNA_intron_boundary i_start="111532" i_stop="111382" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="111381" e_stop="111370" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="111369" i_stop="110505" i_length="865"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110504" e_stop="110434" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110157" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109064" e_stop="108946" e_length="119"/>
          </exon>
          <intron i_serial="6" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108701" e_stop="108449" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112412" stop="112364"/>
              <exon start="111652" stop="111533"/>
              <exon start="111381" stop="111370"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG : GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCAT : ATGAACCTATTG : GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTT</gDNA_template>
            <first_frame> S  R  A  F  S  H  *  I  P  L  C  P  S  C  S  S   : G  I  V  K  K  K  E  K  W  G  *  H  S  P  S  F  S  A  G  Y  L  P  R  R  K  C  A  S  S  W  L  D  S  M  Q  L  V  R  P  P   : Y  E  P  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  </first_frame>
            <second_frame>  L  V  L  S  L  T  R  S  L  F  A  Q  A  V  L  Q  :  G  S  L  R  R  K  R  N  G  V  D  I  H  Q  A  F  Q  P  A  I  C  Q  E  G  N  A  H  P  H  G  W  T  R  C  S  W  *  D  H  H  :  M  N  L  L  :  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F </second_frame>
            <third_frame>   S  C  F  L  S  L  D  P  S  L  P  K  L  F  F  R :   D  R  *  E  E  R  E  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I :   *  T  Y  W :   F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111620" stop="111533"/>
                    <exon start="111381" stop="111370"/>
                    <exon start="110504" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSPSFSAGYLPRRKCASSWLDSMQLVRPPYEPIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="114951" PGL_stop="113902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114951" e_stop="114856"/>
            <exon e_start="114772" e_stop="114622"/>
            <exon e_start="114536" e_stop="113902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.471" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114951" e_stop="114856" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="114855" i_stop="114773" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114772" e_stop="114622" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.471" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="114536" e_stop="113902" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114951" stop="114856"/>
              <exon start="114772" stop="114622"/>
              <exon start="114536" stop="113902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACTCAAAGCTCCGTGCAAAGATTGCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATT : AGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT : GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCT</gDNA_template>
            <first_frame> G  L  K  A  P  C  K  D  C  *  F  W  V  G  Q  V  I  P  R  R  Q  K  S  H  K  H  C  H  C  W  H  I  :  R  I  Y  G  S  R  I  L  G  T  W  S  I  D  R  K  S  R  C  L  Q  L  W  S  S  S  N  G  N  C  Y  W  K  A  K  *  Q  E  H  K  *  *  K  Y  R  K  L  S  F  H   : C  V  G  L  L  S  T  R  Y  S  G  G  T  I  R  S  E  S  H  V  A  Q  L  Q  H  H  Q  C  E  K  *  D  R  E  S  F  T  C  G  A  F  V  H  S  R  D  P  N  S  T  S  I  H  V  *  G  I  T  D  D  P  R  E  R  R  R  A  A  G  T  Y  *  S  T  I  C  *  R  E  H  H  G  T  S  W  S  L  G  E  V  F  A  *  S  R  *  F  *  F  N  C  Q  L  I  S  *  F  I  L  P  Q  M  M  I  F  Q  S  P  E  T  D  A  N  D  Y  K  H  H  F  A  S  C  S  *  R  S  *  *  S  S  S  *  L  *  Q  Q  L  C  I  S  S  K  Q  K  L  G  S  A  I  *  I  L  D  S  T  *  A  L  L  A  Q  E  Y  D  C  I  G  S  P  S  L  E  K  D  C  N  V  V  C  I  N  R  A  Q  C  N  N  I  V  Y  L  S  *  *  Y  S  L  S  V  Y  I  S </first_frame>
            <second_frame>  D  S  K  L  R  A  K  I  A  D  F  G  L  A  R  S  F  Q  E  D  K  S  H  I  S  T  A  I  A  G  T  L :   G  Y  M  A  P  E  Y  L  A  H  G  Q  L  T  E  K  A  D  V  Y  S  F  G  V  L  L  M  E  I  V  T  G  R  Q  N  N  R  S  I  N  D  E  N  T  E  S  L  V  S  I  :  V  W  D  Y  Y  Q  R  G  I  V  E  E  L  F  D  P  S  L  M  L  H  N  Y  N  T  I  N  V  K  N  E  I  A  R  V  L  H  V  G  L  L  C  T  Q  E  I  Q  T  V  R  P  S  M  S  K  A  L  R  M  I  L  E  K  E  E  E  L  P  A  P  T  N  P  P  F  V  D  E  N  T  M  E  L  H  G  P  W  E  K  Y  S  L  S  Q  G  D  S  S  S  I  A  N  L  S  H  S  S  F  Y  P  R  *  *  Y  F  K  A  L  K  L  M  L  T  I  I  S  I  I  S  P  R  A  L  D  D  H  S  N  R  A  V  S  Y  N  N  N  C  V  S  V  P  N  K  S  W  G  R  L  S  E  F  S  I  L  L  K  L  C  *  H  R  S  M  I  V  *  D  L  L  H  W  K  R  I  V  T  *  Y  V  *  I  G  L  S  V  I  T  *  F  I  C  L  N  D  I  L  *  V  F  I  F   </second_frame>
            <third_frame>   T  Q  S  S  V  Q  R  L  L  I  L  G  W  P  G  H  S  K  K  T  K  V  T  *  A  L  P  L  L  A  H   : *  D  I  W  L  Q  N  T  W  H  M  V  N  *  Q  K  K  Q  M  F  T  A  L  E  F  F  *  W  K  L  L  L  E  G  K  I  T  G  A  *  M  M  K  I  Q  K  A  *  F  P  L :   C  G  I  T  I  N  A  V  *  W  R  N  Y  S  I  R  V  S  C  C  T  T  T  T  P  S  M  *  K  M  R  S  R  E  F  Y  M  W  G  F  C  A  L  K  R  S  K  Q  Y  V  H  P  C  L  R  H  Y  G  *  S  S  R  K  K  K  S  C  R  H  L  L  I  H  H  L  L  T  R  T  P  W  N  F  M  V  L  G  R  S  I  R  L  V  K  V  I  L  V  Q  L  P  T  Y  L  I  V  H  F  T  P  D  D  D  I  S  K  P  *  N  *  C  *  R  L  *  A  S  F  R  L  V  L  L  T  I  I  V  I  E  Q  L  V  I  T  T  I  V  Y  Q  F  Q  T  K  V  G  V  G  Y  L  N  S  R  F  Y  L  S  F  V  S  T  G  V  *  L  Y  R  I  S  F  I  G  K  G  L  *  R  S  M  Y  K  *  G  S  V  *  *  H  S  L  F  V  L  M  I  F  F  E  C  L  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114950" stop="114856"/>
                    <exon start="114772" stop="114622"/>
                    <exon start="114536" stop="114201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLMEIVTGRQNNRSINDENTESLVSIVWDYYQRGIVEELFDPSLMLHNYNTINVKNEIARVLHVGLLCTQEIQTVRPSMSKALRMILEKEEELPAPTNPPFVDENTMELHGPWEKYSLSQGDSSSIANLSHSSFYPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="148094" PGL_stop="149525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148094" e_stop="148467"/>
            <exon e_start="148945" e_stop="149076"/>
            <exon e_start="149202" e_stop="149525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="0.660" acc_prob="0.886" e_score="0.992"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="148094" e_stop="148467" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="148468" i_stop="148944" i_length="477"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="148945" e_stop="149076" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.660" acc_prob="0.886">
            <gDNA_intron_boundary i_start="149077" i_stop="149201" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="149202" e_stop="149525" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148094" stop="148467"/>
              <exon start="148945" stop="149066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148328" stop="148467"/>
              <exon start="148945" stop="149076"/>
              <exon start="149202" stop="149525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596143" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATGAGTGGCTCGACATTCCTTGGATGAAGGACTATTACAACTTTGGGTTTGATCACTTCAGTATGACCTGGAGGAAAGTTGGTATCCGGGGTCTTCTTGATTACCTTTTAGGGAATGCTGGTCCATTTGCTTCAGGGGACTGGATACTTCCTGATCTTACCATCCAGGGGTCAATCAAGTTGAACAGACACTTGCATACATTTCCGCAAACATACTACTTCAGCTATGCTACCAAGCATCCCACAAAAGTTATGGGTTTTGCAGTTCCTTCTGGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAG : GGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAACGTGGCATCTG : GTACTATAAAATTATAGAAGGCGACCACATTTTCTTCGTCGTGAATCGTGAAAGAGCTGGAGTTCAATTCGATTTGATCTACAACAGCATATTCGAGCGCTGCAGGAAACATGTCTTAAGAAAGACAACAGCACTGCCAAACCAAGTAACTCCTGAATAGTCAGTAAGATACTTTTCTCATTTGTTTATGAAATACTGTATTATCACATTCTTTGTAGTTCTTTTACACGCTGTCGAAAATCTATTTCGTAAAACGAAATAAGATTTTACGGTCAATGTCTCTCACACTGTTCTTGTCTGTATGTAATTTGAACAGAGATGCAA</gDNA_template>
            <first_frame> V  Y  E  W  L  D  I  P  W  M  K  D  Y  Y  N  F  G  F  D  H  F  S  M  T  W  R  K  V  G  I  R  G  L  L  D  Y  L  L  G  N  A  G  P  F  A  S  G  D  W  I  L  P  D  L  T  I  Q  G  S  I  K  L  N  R  H  L  H  T  F  P  Q  T  Y  Y  F  S  Y  A  T  K  H  P  T  K  V  M  G  F  A  V  P  S  G  I  R  G  I  H  P  L  L  F  I  R  V  L  Q  M  S  Q  W  R  H  P  Q  H  V  S  P  P  Y  K  G  Y  R :   D  E  D  W  W  D  N  D  G  A  L  N  T  I  S  M  T  H  P  R  L  P  V  E  H  P  S  C  L  V  I  K  D  S  D  C  Q  P  L  Q  R  G  I  W :   Y  Y  K  I  I  E  G  D  H  I  F  F  V  V  N  R  E  R  A  G  V  Q  F  D  L  I  Y  N  S  I  F  E  R  C  R  K  H  V  L  R  K  T  T  A  L  P  N  Q  V  T  P  E  *  S  V  R  Y  F  S  H  L  F  M  K  Y  C  I  I  T  F  F  V  V  L  L  H  A  V  E  N  L  F  R  K  T  K  *  D  F  T  V  N  V  S  H  T  V  L  V  C  M  *  F  E  Q  R  C   </first_frame>
            <second_frame>  F  M  S  G  S  T  F  L  G  *  R  T  I  T  T  L  G  L  I  T  S  V  *  P  G  G  K  L  V  S  G  V  F  L  I  T  F  *  G  M  L  V  H  L  L  Q  G  T  G  Y  F  L  I  L  P  S  R  G  Q  S  S  *  T  D  T  C  I  H  F  R  K  H  T  T  S  A  M  L  P  S  I  P  Q  K  L  W  V  L  Q  F  L  L  A  F  E  G  Y  I  L  C  Y  S  L  E  S  C  K  *  A  N  G  G  I  L  N  M  F  L  L  R  I  R  A  I   : G  M  K  I  G  G  T  M  T  V  L  S  T  P  Y  L  *  H  I  L  V  C  R  L  N  T  L  V  A  L  *  L  K  I  L  I  A  S  R  C  N  V  A  S   : G  T  I  K  L  *  K  A  T  T  F  S  S  S  *  I  V  K  E  L  E  F  N  S  I  *  S  T  T  A  Y  S  S  A  A  G  N  M  S  *  E  R  Q  Q  H  C  Q  T  K  *  L  L  N  S  Q  *  D  T  F  L  I  C  L  *  N  T  V  L  S  H  S  L  *  F  F  Y  T  L  S  K  I  Y  F  V  K  R  N  K  I  L  R  S  M  S  L  T  L  F  L  S  V  C  N  L  N  R  D  A  </second_frame>
            <third_frame>   L  *  V  A  R  H  S  L  D  E  G  L  L  Q  L  W  V  *  S  L  Q  Y  D  L  E  E  S  W  Y  P  G  S  S  *  L  P  F  R  E  C  W  S  I  C  F  R  G  L  D  T  S  *  S  Y  H  P  G  V  N  Q  V  E  Q  T  L  A  Y  I  S  A  N  I  L  L  Q  L  C  Y  Q  A  S  H  K  S  Y  G  F  C  S  S  F  W  H  S  R  D  T  S  S  A  I  H  *  S  P  A  N  E  P  M  A  A  S  S  T  C  F  S  S  V  *  G  L  *  :  G  *  R  L  V  G  Q  *  R  C  S  Q  H  H  I  Y  D  T  S  S  F  A  G  *  T  P  *  L  P  C  N  *  R  F  *  L  P  A  V  A  T  W  H  L  :  V  L  *  N  Y  R  R  R  P  H  F  L  R  R  E  S  *  K  S  W  S  S  I  R  F  D  L  Q  Q  H  I  R  A  L  Q  E  T  C  L  K  K  D  N  S  T  A  K  P  S  N  S  *  I  V  S  K  I  L  F  S  F  V  Y  E  I  L  Y  Y  H  I  L  C  S  S  F  T  R  C  R  K  S  I  S  *  N  E  I  R  F  Y  G  Q  C  L  S  H  C  S  C  L  Y  V  I  *  T  E  M  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="148094" stop="148467"/>
                    <exon start="148945" stop="149076"/>
                    <exon start="149202" stop="149361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYEWLDIPWMKDYYNFGFDHFSMTWRKVGIRGLLDYLLGNAGPFASGDWILPDLTIQGSIKLNRHLHTFPQTYYFSYATKHPTKVMGFAVPSGIRGIHPLLFIRVLQMSQWRHPQHVSPPYKGYRDEDWWDNDGALNTISMTHPRLPVEHPSCLVIKDSDCQPLQRGIWYYKIIEGDHIFFVVNRERAGVQFDLIYNSIFERCRKHVLRKTTALPNQVTPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="150465" PGL_stop="152135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150465" e_stop="151014"/>
            <exon e_start="151846" e_stop="152135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.958"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="150465" e_stop="151014" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="151846" e_stop="152135" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150465" stop="151014"/>
              <exon start="151846" stop="152135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGAAAAGAAGAAGAAGAAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA : GGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACTCCCCCATTACGAGGTGTCTGGTGGCAGACGTGACGGCATGGAATCGCGCGTAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATGA</gDNA_template>
            <first_frame> *  G  W  D  F  C  S  Y  F  T  S  L  R  D  S  I  T  S  A  S  L  I  I  S  K  S  S  S  *  I  S  R  T  *  F  W  *  D  R  R  N  D  P  W  *  *  *  Q  C  C  S  C  Q  C  Q  *  H  R  D  S  L  L  K  L  *  D  K  E  R  K  V  L  E  G  K  E  E  E  E  E  Q  E  Q  E  E  Q  K  R  N  E  P  S  R  T  R  F  *  G  F  Q  F  *  A  S  P  N  R  R  C  P  P  W  I  S  T  S  F  S  *  T  *  R  R  S  D  Y  *  R  T  R  R  T  R  D  F  R  R  I  E  R  G  F  L  S  K  Y  M  S  S  S  R  G  N  H  Q  K  W  P  N  *  S  L  S  K  *  L  Y  Y  C  C  C  H  P  *  A  F  L  T  *  L  L  C  Q   : R  L  R  W  I  N  I  A  R  Y  N  T  N  R  W  E  N  R  E  V  I  T  V  K  W  Y  Y  S  Q  G  I  *  T  H  *  R  D  Q  S  R  T  R  R  E  L  P  R  H  C  L  V  L  *  C  F  S  L  F  I  S  *  R  L  C  C  I  G  T  P  P  L  R  G  V  W  W  Q  T  *  R  H  G  I  A  R  R  K  R  R  W  Q  P  P  I  A  *  * </first_frame>
            <second_frame>  K  V  G  I  F  A  A  I  L  L  V  C  A  I  L  S  P  L  L  A  S  S  F  P  N  H  R  P  E  F  L  E  H  D  S  G  K  T  D  V  T  I  H  G  D  N  N  N  V  V  H  A  N  V  N  D  I  A  I  P  C  S  N  Y  E  T  R  N  E  R  S  L  K  E  K  K  K  K  K  N  K  N  K  K  N  K  K  E  M  N  H  H  E  H  D  F  E  A  F  N  F  E  H  P  Q  I  E  G  V  R  H  G  Y  P  Q  V  F  P  E  H  N  V  D  P  I  T  K  E  H  E  E  P  E  I  L  E  G  L  R  E  G  F  Y  Q  N  T  C  P  Q  A  E  E  I  I  R  N  G  L  I  R  A  F  Q  N  D  S  T  I  A  A  A  I  P  R  L  F  L  H  D  C  F  V  K  :  G  C  D  G  S  I  L  L  D  T  T  P  T  G  G  K  I  E  K  L  S  P  S  N  G  I  T  V  K  G  F  E  L  I  D  E  I  K  A  E  L  E  E  N  C  P  G  I  V  S  C  S  D  V  L  A  Y  L  S  R  D  A  F  V  A  S  G  L  P  H  Y  E  V  S  G  G  R  R  D  G  M  E  S  R  V  E  N  V  V  G  N  L  P  L  P  D   </second_frame>
            <third_frame>   R  L  G  F  L  Q  L  F  Y  *  F  A  R  F  Y  H  L  C  *  P  H  H  F  Q  I  I  V  L  N  F  *  N  M  I  L  V  R  Q  T  *  R  S  M  V  I  I  T  M  L  F  M  P  M  S  M  T  S  R  F  L  A  Q  I  M  R  Q  G  T  K  G  P  *  R  K  R  R  R  R  R  T  R  T  R  R  T  K  K  K  *  T  I  T  N  T  I  L  R  L  S  I  L  S  I  P  K  *  K  V  S  A  M  D  I  H  K  F  F  L  N  I  T  *  I  R  L  L  K  N  T  K  N  Q  R  F  *  K  D  *  E  R  V  F  I  K  I  H  V  L  K  Q  R  K  S  S  E  M  A  *  L  E  P  F  K  M  T  L  L  L  L  L  P  S  L  G  F  S  Y  M  I  A  L  S  K :   V  A  M  D  Q  Y  C  S  I  Q  H  Q  P  V  G  K  *  R  S  Y  H  R  Q  M  V  L  Q  S  R  D  L  N  S  L  T  R  S  K  Q  N  S  K  R  T  A  Q  A  L  S  R  A  L  M  F  *  P  I  Y  L  V  T  P  L  L  H  R  D  S  P  I  T  R  C  L  V  A  D  V  T  A  W  N  R  A  *  K  T  S  L  A  T  S  H  C  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150466" stop="151014"/>
                    <exon start="151846" stop="152133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGIFAAILLVCAILSPLLASSFPNHRPEFLEHDSGKTDVTIHGDNNNVVHANVNDIAIPCSNYETRNERSLKEKKKKKNKNKKNKKEMNHHEHDFEAFNFEHPQIEGVRHGYPQVFPEHNVDPITKEHEEPEILEGLREGFYQNTCPQAEEIIRNGLIRAFQNDSTIAAAIPRLFLHDCFVKGCDGSILLDTTPTGGKIEKLSPSNGITVKGFELIDEIKAELEENCPGIVSCSDVLAYLSRDAFVASGLPHYEVSGGRRDGMESRVENVVGNLPLPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 109 chains have been computed
$ 
$ memory statistics:
$ 68624 bytes spliced alignments in total
$ 32 spliced alignments have been stored
$ 2144 bytes was the average size of a spliced alignment
$ 29736 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1565 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:56:27
-->
