<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:41:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289190" ref_strand="-" ref_description="SGN-E289190 [cLES-18-L10]">
      <seq>gattcaatgtattttggtactgagaaacttggaggacaaaatatttagattattgtatcggaaagtggttggccttttgaaggacacccttccggtacttttgaaaacgcgatgacttattatacaaacttgattaatcatgtgaaaggaggggcaggaaccccaaagaaaccaggaagggctatagaaacctatttattcgccatgtttgatgaaaatagaaaggatggaaaaccaagtgagcaacattttgggctctttaaacctgaccagaggccaaagtatcaactcaaatttgattaatgatcccatattataatccatatatagatattttatgttatggatatgaataatcaataaatgataggatatgtgagaaaaatgtatggcctcttttgtgttccttgatatcataacattaatattgaagtatttttaataaaataggtatttttattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4348" stop="3284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4048" g_stop="3584" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="496"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E289190" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4048" e_stop="3584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAGATAGGTATTTTAATTGAAA</genome_strand>
        <mrna_strand>GATTCAATGTATTTTGGTACTGAGAAACTTGGAGGACAAAATATTTAGATTATTGTATCGGAAAGTGGTTGGCCTTTTGAAGGACACCCTTCCGGTACTTTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACCCCAAAGAAACCAGGAAGGGCTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGGCTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATCCCATATTATAATCCATATATAGATATTTTATGTTATGGATATGAATAATCAATAAATGATAGGATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAAATAGGTATTTTTATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744521" ref_strand="+" ref_description="SGN-E744521 [GI|170379]">
      <seq>tcaatttccaattttgctatggcttttctaagttctctcttagcttcccttttacttgttgggcttctaatccaaataacaggagcgcagcctatcggagtatgttatggaaaaattgccaataatttaccatcggatcaagatgtcataaaattatataattcgaataacatcaagaaaatgagaatttactttccagaaacaaatgtctttaatgccctcaaaggaagtaacattgaaataattcttgatgtcccaaatcaagatcttgaagccctagccaatccttccaaacgccaaggttgggttcaagataatataagaaatcactttccggatgttaaattcaaatatatagccgttggaaacgaagttgatccaggtagagacagtggtaaatacgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcagggttgcaaaatcaaatcaaggtctcaaccgcgacatatttagggcttttaaccaacacctacccacctagagatagcatttttcgcgatgaatataaaagtttcatcaatcccataattggatttctatcaagacataatcttccacttttagccaatatttacccttattttggccatgctgatgataatgttcctcttccttatgcacttttcaagcaacaagggctaaacgatgcaggatatcaaaatcttttcgatgcccttgtggattcaatgtattttgctactgagaaacttggaggacaaaatattgagattattgtatcggaaagtggttggccttctgaaggacacccttccgctactcttgaaaacgcgatgacttattatacaaacttgattaatcatgtgaaaggaggggcaggaacaccaaagaaaccaggaaggactatagaaacctatttattcgccatgtttgatgaaaatagaaaggatggaaaaccaagtgagcaacattttggactctttaaacctgaccagaggccaaagtatcaactcaaatttgattaatgataccatattataatcaatatatagatattttatgttatgtatatgaataatcaataaatgatagtatatgtgagaaaaatgtatggcctcttttgtgttccttgatatcataacattaatattgaagtatttttaataagataggtattttaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4926" stop="3286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4851" g_stop="4829" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="129" r_length="22" r_score="0.652"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4828" i_stop="4646" i_length="183">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4645" g_stop="3586" g_length="1060"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="1189" r_length="1060" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E744521" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1083</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4851" e_stop="4829"/>
          <exon e_start="4645" e_stop="3586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAGTCACAAATAAATATAGTAACCTTAAATCTAATATTTCAATTTTTTTTTAGATTTTTTATTTTTTCGATAAATCTTAAAAATGAGTAATTGACTAATAAAAAATATAAAAAGTATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTT-CAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAGATAGGTATTTTAATTGA</genome_strand>
        <mrna_strand>TGGAAAAATTGCCAATAATT-TA.......................................................................................................................................................................................CCATCGGATCAAGATGTCATAAAATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCAATCCTTCCAAACGCCAA-GGTTGGGTTCAAGATAATATAAGAAATCACTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAGATAGGTATTTTAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374966" ref_strand="+" ref_description="SGN-E374966 [TUS-15-O3](-)">
      <seq>ccttattttggccatgctgatgataatgttccttttccttatgcacttttcaagcaacaaggggttaacgatgcaggatatcaaaatttttttgaagcccctgtggattcaatgtattttggtactgagaaacttggagggcaaaatatttagattattggattggaaagtgggtggccttttgaaggacacccttccgctacttttgaaaacgcgatgactttttatacaaacttgatttattatgtgaaaggaggggcagggacccccaaaaaaccaggaagggctatagaaacctatttatttgccatgtttgatgaaaatagaaaggatgggaaaccaagtgagccaccttttgggcttttttaacctggccaaagggcaaaggatcaactcaaatttgatttatgattccctattataatccatatatagatattttatgttatggatatgaataatccataaatgataggatatgttagaaaaaaggatggccttttttgtggtccttgatattataacctttataattaaggattttttattagatagggttttttatttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4453" stop="3284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4153" g_stop="3599" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="599"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E374966" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4153" e_stop="3599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAGATAG</genome_strand>
        <mrna_strand>CCTTATTTTGGCCATGCTGATGATAATGTTCCTTTTCCTTATGCACTTTTCAAGCAACAAGGGGTTAACGATGCAGGATATCAAAATTTTTTTGAAGCCCCTGTGGATTCAATGTATTTTGGTACTGAGAAACTTGGAGGGCAAAATATTTAGATTATTGGATTGGAAAGTGGGTGGCCTTTTGAAGGACACCCTTCCGCTACTTTTGAAAACGCGATGACTTTTTATACAAACTTGATTTATTATGTGAAAGGAGGGGCAGGGACCCCCAAAAAACCAGGAAGGGCTATAGAAACCTATTTATTTGCCATGTTTGATGAAAATAGAAAGGATGGGAAACCAAGTGAGCCACCTTTTGGGCTTTTTTAACCTGGCCAAAGGGCAAAGGATCAACTCAAATTTGATTTATGATTCCCTATTATAATCCATATATAGATATTTTATGTTATGGATATGAATAATCCATAAATGATAGGATATGTTAGAAAAAAGGATGGCCTTTTTTGTGGTCCTTGATATTATAACCTTTATAATTAAGGATTTTTTATTAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544136" ref_strand="+" ref_description="SGN-E544136 [TUS-66-F1](-)">
      <seq>gccgttgaaaacgaagttgatccaggtagagacagtggtaaatacgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcagggttgcaaaatcaaatcaaggtctcaaccgcgacatatttagggcttttaaccaacacctacccacctagagatagcatttttcgcgatgaatataaaagtttcatcaatcccataattggatttctatcaagacataatcttccacttttagccaatatttacccttattttggccatgctgatgataatgttcctcttccttatgcacttttcaagcaacaagggctaaacgatgcaggatatcaaaatcttttcgatgcccttgtggattcaatgtattttgctactgagaaacttggaggacaaaatattgagattattgtatcggaaagtggttggccttctgaaggacacccttccgctactcttgaaaacgcgatgacttattatacaaacttgattaatcatgtgaaaggaggggcaggaacaccaaagaaaccaggaaggactatagaaacctatttattcgccatgtttgatgaaaatagaaaggatggaaaaccaagtgagcaacattttggactctttaaacctgaccagaggccaaagtatcaactcaaatttgattaatgataccatattataatcaatatatagatattttatgttatgtatatgaataatcaataaatgatagtatatgtgagaaaaatgtatggcctcttttgtgttccttgatatcataacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4717" stop="3322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4417" g_stop="3616" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E544136" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4417" e_stop="3616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAG</genome_strand>
        <mrna_strand>GCCGTTGAAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354230" ref_strand="+" ref_description="SGN-E354230 [cTOS-16-I16]">
      <seq>tagagatagcatttttcgcgatgaatataaaagtttcatcaatcccataattggatttctatcaagacataatcttccacttttagccaatatttacccttattttggccatgctgatgataatgttcctcttccttatgcacttttcaagcaacaagggctaaacgatgcaggatatcaaaatcttttcgatgcccttgtggattcaatgtattttgctactgagaaacttggaggacaaaatattgagattattgtatcggaaagtggttggccttctgaaggacacccttccgctactcttgaaaacgcgatgacttattatacaaacttgattaatcatgtgaaaggaggggcaggaacaccaaagaaaccaggaaggactatagaaacctatttattcgccatgtttgatgaaaatagaaaggatggaaaaccaagtgagcaacattttggactcttttaacctgaccagaagccaaagtatcaactcaaatttgattaatgataccatattataatcaatatatagatattttatggtatggatatgaataatcaataaatgatagtatatgtgagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4550" stop="3364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4250" g_stop="3665" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E354230" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4250" e_stop="3665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAA</genome_strand>
        <mrna_strand>TAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTTAACCTGACCAGAAGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGGTATGGATATGAATAATCAATAAATGATAGTATATGTGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624414" ref_strand="+" ref_description="SGN-E624414 [GI|26422795]">
      <seq>cccttttacttgttgggctgctaatccaaattacaggagcgcagcctatcggagtatgctatggaaaaattgccaataatttaccatcagatcaagatgtcataaaattatataatgctaataacatcaagaaactgagaatttactatccagatacaaatgtctttaatgccctcaaaggaagtaacattgaaataattcttgatgtcccaaatcaagatcttgaagccctagccaatccttcaaatgccaatggttgggttcaagataatataagaaatcattttcccgatgttaaattcaaatatatagccgttggaaatgaagttgatcctggtagagctagtggtaaatatgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcaggattgcaaaatcaaattaaggtctcaaccgcgacatatctagggctcttaaccaacacctacccacctaaagatagcatttttcgcgaagaatataaaagtttcattaatcctataattggatttctagcaagacataatcttccactcttagccaatatttacccttattttgcccatgctgatgataatgttcctctttcttatgcactcttcaagcaacaagggctaaacgatgcaggatatcaaaaccttttcgatgcccttgtggattcaatgtattttgctacggagaaacttggaggacaaaatattgagattattgtatcggaaagtggttggccttctgagggacacccttcagcaactctggaaaatgcgaggacttattatacgaatttaattaatcatgtgaaaggaggagctggaacaccaaagaaacctggaaagactatagaaacttatttattcacgatgtttgatgaaaatagaaaggatggaaaaccaagtgagcaacattttggactcttttatcctgataagaggccaaagtatcaactcaattttaattaatgatagcatattataattaatatatagatatttaatataatatatgaataataaggaagaaatggtatgtttttatcttcaataaatgatagtatatttaattaaaatatgtaatgagaaaatgtatggcctcttttgtgttccttgatatcaaaattaatattaagtatttttaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4926" stop="3300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4728" g_stop="3674" g_length="1055"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1053" r_length="1053" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1158" polyA_stop="1169"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E624414" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1055</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4728" e_stop="3674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATAT</genome_strand>
        <mrna_strand>CCCTTTTACTTGTTGGGCTGCTAATCCAAATTACAGGAGCGCAGCCTATCGGAGTATGCTATGGAAAAATTGCCAATAATTTACCATCAGATCAAGATGTCATAAAATTATATAATGCTAATAACATCAAGAAACTGAGAATTTACTATCCAGATACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCAATCCTTCAAATGCCAATGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCCGATGTTAAATTCAAATATATAGCCGTTGGAAATGAAGTTGATCCTGGTAGAGCTAGTGGTAAATATGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGATTGCAAAATCAAATTAAGGTCTCAACCGCGACATATCTAGGGCTCTTAACCAACACCTACCCACCTAAAGATAGCATTTTTCGCGAAGAATATAAAAGTTTCATTAATCCTATAATTGGATTTCTAGCAAGACATAATCTTCCACTCTTAGCCAATATTTACCCTTATTTTGCCCATGCTGATGATAATGTTCCTCTTTCTTATGCACTCTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAACCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACGGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAGGGACACCCTTCAGCAACTCTGGAAAATGCGAGGACTTATTATACGAATTTAATTAATCATGTGAAAGGAGGAGCTGGAACACCAAAGAAACCTGGAAAGACTATAGAAACTTATTTATTCACGATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTTATCCTGATAAGAGGCCAAAGTATCAACTCAATTTTAATTAATGATAGCATATTATAATTAATATATAGATATTTAAT-ATA-ATATATGAATAATAAGGAAGAAATGGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400668" ref_strand="+" ref_description="SGN-E400668 [PPC-1-D12]">
      <seq>attatataatgctaataacatcaagaaactgagaatttactatccagatacaaatgtctttaatgccctcaaaggaagtaacattgaaataattcttgatgtcccaaatcaagatcttgaagccctagccaatccttcaaatgccaatggttgggttcaagataatataagaaatcattttcccgatgttaaattcaaatatatagccgttggaaatgaagttgatcctggtagagctagtggtaaatatgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcaggattgcaaaatcaaattaaggtctcaaccgcgacatatctagggctcttaaccaacacctacccacctaaagatagcatttttcgagaagaatataaaagtttcattaatcctataattggatttctagcaagacataatcttccactcttagccaatatttacccttattttgcccatgctgatgataatgttcctctttcttatgcacttttcaagcaacaagggctaaacgatgcaggatatcaaaaccttttcgatgcccttgtggattcaatgtattttgctacggagaaacttggaggacaaaatattgagattattgtatcggaaagtggttggccttctgagggacacccttcagcaactctgggaaatgcgaggacttattatacgaatttaattaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4922" stop="3608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4622" g_stop="3908" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E400668" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4622" e_stop="3908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCAT</genome_strand>
        <mrna_strand>ATTATATAATGCTAATAACATCAAGAAACTGAGAATTTACTATCCAGATACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCAATCCTTCAAATGCCAATGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCCGATGTTAAATTCAAATATATAGCCGTTGGAAATGAAGTTGATCCTGGTAGAGCTAGTGGTAAATATGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGATTGCAAAATCAAATTAAGGTCTCAACCGCGACATATCTAGGGCTCTTAACCAACACCTACCCACCTAAAGATAGCATTTTTCGAGAAGAATATAAAAGTTTCATTAATCCTATAATTGGATTTCTAGCAAGACATAATCTTCCACTCTTAGCCAATATTTACCCTTATTTTGCCCATGCTGATGATAATGTTCCTCTTTCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAACCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACGGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAGGGACACCCTTCAGCAACTCTGGGAAATGCGAGGACTTATTATACGAATTTAATTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206503" ref_strand="+" ref_description="SGN-E206503 [cLEC-23-J19]">
      <seq>gaaaatgagaatttactttccagaaacaaatgtctttaatgccctcaaaggaagtaacattgaaataattcttgatgtcccaaatcaagatcttgaagccctagccactccttcaaacgccaacggttgggttcaagataatataagaaatcattttccggatgttaaattcaaatatatagccgttggaaacgaagttgatccatgtagagacagtggtaaatacgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcagggttgcaaaatcaaatcaaggtctcaaccgcgacatatttagggcttttaaccaacacctacccacctagagatagcatttttcgcgatgaatataaaagtttcatcaatcccataattggatttctatcaagacataatcttccacttttagccaatatttacccttattttggccatgctgatgataatgttcctcttgcttatgcacttttcaagcaacaagggctaaacgatgcaggatatcaaaatcttttcgatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4898" stop="3754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4598" g_stop="4054" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E206503" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4598" e_stop="4054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCC</genome_strand>
        <mrna_strand>GAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCATGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTGCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205819" ref_strand="+" ref_description="SGN-E205819 [cLEC-20-C10]">
      <seq>aattatataattcgaataacatcaagaaaatgagaatttgctttccagaaacaaatgtctttaatgccctcaaaggaagtaacattgaaataattcttgatgtcccaaatcaagatcttgaagccctagccactccttcaaacgccaacggttgggttcaagataatataagaaatcattttccggatgttaaattcaaatatatagccgttggaaacgaagttgatccaggtagagacagtggtaaatacgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcagggttgcaaaatcaaatcaaggtctcaaccgcgacatatttagggcttttaaccaacacctacccacctagagatagcatttttcgcgatgaatataaaagtttcatcaatcccataattggatttctatcaagacataatcttccacttttagccaatatttacccttattttggccatgctgatgataatgttcctcttccttatgcacttttcaagcaacaagggctaaacgatgcaggatatcaaaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4923" stop="3763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4623" g_stop="4063" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E205819" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4623" e_stop="4063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTT</genome_strand>
        <mrna_strand>AATTATATAATTCGAATAACATCAAGAAAATGAGAATTTGCTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401418" ref_strand="+" ref_description="SGN-E401418 [PPC-4-K1]">
      <seq>aagtaacattgaaataattcttgatgtcccaaatcaagatcttgaatccctagccaatccttcaaatgccaatggttgggttcaagataatataagaaatcattttcccgatgttaaattcaaatatatagccgttggaaatgaagttgatcctggtagagagagtggtaaatatgcacgatttgttggtccagcaatggaaaatatttacaacgcgttatcatcagcagggttgcaaaatcaaatcaaggtctcaacatcgacatattcagggctcttaaccaacacctacccacctagagatagcatttttcgcgaagaatataaaaggttcattaatcctataattggatttctagcacgacataatcttccactcttagccaatatttacccttattttgcccatattgataacactaacgccgttcctctttcttatgcacttttcaatcaacaagggagaaatgatgcaggatatcaatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4847" stop="3763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4547" g_stop="4063" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E401418" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4547" e_stop="4063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGAT--GA-TAA---TGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTT</genome_strand>
        <mrna_strand>AAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAATCCCTAGCCAATCCTTCAAATGCCAATGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCCGATGTTAAATTCAAATATATAGCCGTTGGAAATGAAGTTGATCCTGGTAGAGAGAGTGGTAAATATGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACATCGACATATTCAGGGCTCTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGAAGAATATAAAAGGTTCATTAATCCTATAATTGGATTTCTAGCACGACATAATCTTCCACTCTTAGCCAATATTTACCCTTATTTTGCCCATATTGATAACACTAACGCCGTTCCTCTTTCTTATGCACTTTTCAATCAACAAGGGAGAAATGATGCAGGATATCAATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205405" ref_strand="+" ref_description="SGN-E205405 [cLEC-28-O9]">
      <seq>gccctagccactcctttaaacgccaacgggcgggttcaagataatctaagaaatgattttccggatgttaaattcaaatatatagccgttggaaacgaagttgatccaggtagagacagtgggaaatacgcacgatttgttggtccatcaatggaaaatatttacaacgcgttatcatcagcagggttgcaaaatcaaatcaaggtctcaaccgcgacatatttagggcttttaaccaacacctacccacctaaagatagcatttttcgcgatgaatataaaagtttcatcaatcccataattggatttctatcaagacataatcttccactgttagccaatatttacccttattttggccatgctgatgataatgttcctcttccttatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="4801" stop="3807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4501" g_stop="4107" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E205405" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4501" e_stop="4107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACT</genome_strand>
        <mrna_strand>GCCCTAGCCACTCCTTTAAACGCCAACGGGCGGGTTCAAGATAATCTAAGAAATGATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGGAAATACGCACGATTTGTTGGTCCATCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAAAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTGTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434208" ref_strand="+" ref_description="SGN-E434208 [STM-59-J5]">
      <seq>taaaatttcttcatgtgttatgtggaatgaagggtaaaattatggatgctcaccatgagttagatgtcattcttgaaaacatcatcaatgagcacaagaataatggtgaattaggaggtgaaggtttaattgccacattgctaagactaatgaaagagggaggttttcaatttccaatcaccaaagacaatatcaaagctattatttttgacatatttgttgccggaaccgagacttcatcaacaacaattgattgggcgatggtggaaatgatgaggaatccaaatgtactctccaaagctcaagcagaagtaagaaacgcgtttagaggtaaagaaacatttgatgaaaatgacgtcgaagaattgaaatacctaaagttggtcgttaaagaaagtttcagactccatcctccacttccccttttgctcccaagagaatgtagggaagaagtagacataaatggctacaatattcctttgaaaacaaaagttatggttaatgcatgggctatcggaagagatcctaaatattggaatgatgcagaatgtttcaagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="9049" stop="7795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8749" g_stop="8541" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8540" i_stop="8448" i_length="93">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8447" g_stop="8095" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="561" r_length="352" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E434208" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8749" e_stop="8541"/>
          <exon e_start="8447" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTTCATGTGTTATGTGGAATGAAGAGTAAAATCATGGATGTCCACCATGAATTAGATGCCATTCTTGAAAACATCATCAATGAGCACAAAAACAATGGTGAATTAGGAGGTGAAGGTTTAGTTTCCACATTGCTAAGACTAATGAAAGAGGGGGGCCTTCAATTTCCCATCACCAACGACAACATCAAAGCTATTATTTTTGTAAGTATATAATATATGACATAATTCATACCCTCACTATTATTGTATTTGGGAGAAGATAATGTAATATTGTAACTTGATTTATAAATGAAGGACATATTTGCCGCGGGGAACAGAAACTTCTTCAGCGACAATTGATTGGATCATGGTGGAAATGATGAGAAATCCAAATGTACTCTCCAAAGCTCAAGAAGAGGTAAGAAACGCGTTCAAAGGTAAAGAAACATTTGATGAAAATGATGTCGAAGAATTGAAATACCTAAAGTTGGTCGTTAAAGAAAGTTTTAGACTGCATCCTCCATTTCCCCTTTTGCTCCCAAGGGAATGTAGGGAAGAAGTAGAAATAAATGGATACACTATTCCTTTGAAAACAAAAGTTATGGTTAACGCATGGGCTATTGGAAGAGATCCTAAATATTGGGATGACGCAGAAAGCTTCAAACCTG</genome_strand>
        <mrna_strand>TAAAATTTCTTCATGTGTTATGTGGAATGAAGGGTAAAATTATGGATGCTCACCATGAGTTAGATGTCATTCTTGAAAACATCATCAATGAGCACAAGAATAATGGTGAATTAGGAGGTGAAGGTTTAATTGCCACATTGCTAAGACTAATGAAAGAGGGAGGTTTTCAATTTCCAATCACCAAAGACAATATCAAAGCTATTATTTTT.............................................................................................GACATATTTGTTGC-CGGAACCGAGACTTCATCAACAACAATTGATTGGGCGATGGTGGAAATGATGAGGAATCCAAATGTACTCTCCAAAGCTCAAGCAGAAGTAAGAAACGCGTTTAGAGGTAAAGAAACATTTGATGAAAATGACGTCGAAGAATTGAAATACCTAAAGTTGGTCGTTAAAGAAAGTTTCAGACTCCATCCTCCACTTCCCCTTTTGCTCCCAAGAGAATGTAGGGAAGAAGTAGACATAAATGGCTACAATATTCCTTTGAAAACAAAAGTTATGGTTAATGCATGGGCTATCGGAAGAGATCCTAAATATTGGAATGATGCAGAATGTTTCAAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405102" ref_strand="+" ref_description="SGN-E405102 [PPC-16-F3]">
      <seq>agtaaaatttcttcatgtgttatgtggaatgaaaggtaaaattatggatgctcaccatgagttagatgtcattcttgaaaacatcatcaatgagcacaagaataatggtgaattaggaggtgaaggtttaattgccacattgctaagactaatgaaagagggaggttttcaatttccaatcaccaaagacaatatcaaagctattatttttgacatatttgttgccggaaccgagacttcatcaacaacaattgattgggcgatggtggaaatgatgaggaatccaaatgtactctccaaagctcaagcagaagtaagaaacgcgtttagaagtaaagaaacatttgatgaaaatgacgtcgaagaattgaaatacctaaagttggtcgttaaagaaagtttcagactccatcctccacttccccttttgctcccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="9051" stop="7920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8751" g_stop="8541" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8540" i_stop="8448" i_length="93">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8447" g_stop="8220" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="438" r_length="227" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E405102" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8751" e_stop="8541"/>
          <exon e_start="8447" e_stop="8220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAAATTTCTTCATGTGTTATGTGGAATGAAGAGTAAAATCATGGATGTCCACCATGAATTAGATGCCATTCTTGAAAACATCATCAATGAGCACAAAAACAATGGTGAATTAGGAGGTGAAGGTTTAGTTTCCACATTGCTAAGACTAATGAAAGAGGGGGGCCTTCAATTTCCCATCACCAACGACAACATCAAAGCTATTATTTTTGTAAGTATATAATATATGACATAATTCATACCCTCACTATTATTGTATTTGGGAGAAGATAATGTAATATTGTAACTTGATTTATAAATGAAGGACATATTTGCCGCGGGGAACAGAAACTTCTTCAGCGACAATTGATTGGATCATGGTGGAAATGATGAGAAATCCAAATGTACTCTCCAAAGCTCAAGAAGAGGTAAGAAACGCGTTCAAAGGTAAAGAAACATTTGATGAAAATGATGTCGAAGAATTGAAATACCTAAAGTTGGTCGTTAAAGAAAGTTTTAGACTGCATCCTCCATTTCCCCTTTTGCTCCCAAG</genome_strand>
        <mrna_strand>AGTAAAATTTCTTCATGTGTTATGTGGAATGAAAGGTAAAATTATGGATGCTCACCATGAGTTAGATGTCATTCTTGAAAACATCATCAATGAGCACAAGAATAATGGTGAATTAGGAGGTGAAGGTTTAATTGCCACATTGCTAAGACTAATGAAAGAGGGAGGTTTTCAATTTCCAATCACCAAAGACAATATCAAAGCTATTATTTTT.............................................................................................GACATATTTGTTGC-CGGAACCGAGACTTCATCAACAACAATTGATTGGGCGATGGTGGAAATGATGAGGAATCCAAATGTACTCTCCAAAGCTCAAGCAGAAGTAAGAAACGCGTTTAGAAGTAAAGAAACATTTGATGAAAATGACGTCGAAGAATTGAAATACCTAAAGTTGGTCGTTAAAGAAAGTTTCAGACTCCATCCTCCACTTCCCCTTTTGCTCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722625" ref_strand="+" ref_description="SGN-E722625 [FC17DD02]">
      <seq>gatcctaaagtttgtacctgatcaaattttcagtagagagagaaagagattagttttagagagagaaagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaaaaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacacgtaatttgcagttagagaataaagcaatgccatcggagaagcatttagatgagaatgggcgagtcgtacacttgacaaacaaacctttactatcagatggcgctgtggagaaatccgacaggtgttgtggggagcatggaatttgctctcatcaggttcttcgtgatggagaacatgatcatgatgccagtgttattcgaaacaagatgaccagaaaggcatcattcaagttgtcatggcgttgcaaaggtgaaaaaagtgatcagaaaaaacacgacatcgtctcttttgaaaagggaaacataacaactgctgaacgcagcagtaaacaaatttctttgaagtgggaatctcccccacaaacggtgcttatattgacaaagccaaattcaactgctgttagaatactttgttcagaattggtcagatggctaaaagagcagaaaagcttgaacattgtcgttgaaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21842" stop="27856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22141" g_stop="22289" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="297" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="417" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25324" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="611" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25325" i_stop="25954" i_length="630">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25955" g_stop="26068" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="725" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26069" i_stop="26229" i_length="161">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26230" g_stop="26324" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="820" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26325" i_stop="27512" i_length="1188">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27513" g_stop="27556" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="864" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E722625" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22141" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25324"/>
          <exon e_start="25955" e_stop="26068"/>
          <exon e_start="26230" e_stop="26324"/>
          <exon e_start="27513" e_stop="27556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTAAAGTTAGTAACTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAGGTAGATCCATGTAGACCTATTCTGTTTGCACTATAACTTTCCTTGTTGCTCAACTTTTTGTCTGTCGTGAATTGATTAGTGTGAATATGCTTGATTTGGCCTCACTAGAATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATCATGTTGTAAATGATTTAAATAATGTAAGTGTCCTCATTGTTGAAGGGGATTCTCAGTGCAACTGGTTAAATAAGTTGTTGTCATGTGACCTTGAGTTCGACTTGTGGAAACAGTCTCTTGCAGAAATGTAGGGTAAGGCTGTATACAATAAACTCTTGTGGTCAGACCCTTCCCCGGACCCTGTGCATAGCGGAAGCTTAGTGCGACGAGCTTCCCTATAAGTGTCCTCCGATTGTTACAGACTCCTAGCAGTACTGATTTTGTTAGTTATACAAATTACTTTGAGGCTGTTATTGTCGCAAGATATTTCAATGTCGGTGAATTATTGTGCTTTAATTGCTCAATATTGAATGCAGAATGAACGAGACAAGATCTTTCTGTCCCGTGTCCTATTTGTTATATTCTAATGCTTTTATGGTTTACTCTTGAAATATTGCCTATTAATAATTCATTTAATGAAACAGGCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTTTGAAAAGGGAAACATAACAACTGCTGAACGCAGCAGTAAACAAGTATGTCTACTTGTACAGTTTTCTTGCCTTGTTTGGCGATGATAACAGAACTTCAAATGAATACCTTAGGCGCTTTAAAATATGCTTTCCGCTAAACAAACTTATCGAAAAACACTTGTGTCTGAGCGGGGAATCATTTGTTTATTCTTTCTCTTTTTCAGATTTCTTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAGGTAGAATATTAGAGTATAATCATTTTTTTTATCCGCTTTTGGTCTTTCTGTGAAAAAATGTACTAGAACGCAATGGTAATGCTTGTTTTTACGCTAAACGTTTGTAAGGTTAACCCTCGGCAGATATAGGACTGGTCAAATGATTTGCTTGAATTAGATAAATAGATCTTTAACAGCTAACGTTTTCAAGCAGAAGGTAACTAGTTACATCAGTTAACATGTCCGTCTGTTCGAGTTTGAGTTTCCTCATCATTCATCACCCGACATTCCAATAGTTCTTACATGCTCGGCCTCACAAGACTTAACGATAAATGTCATCCTCTAACAACACACATCTAGCTTTAGCTTCTTTTCTGAGATTCTTGTGTGCGTTGTCCTTTCCTTTTTTGGGAACTTCCAAAATGGTTACCTCGTTTTAATCAACTAAATAGGAAATTCAGAGTATGCTTAGCAAAATAGCAATGTTGTTAGATAGACTCCCTTCTTAAATACACGTTTCCCAAAGGGACGGATTCACCTATTTTTGTGCTTGGGGGATGATTTGGAACGAAAATCAAATAAGAAGAGAAAATCATTACTTTTATATGGGAAAGCCTCGAAGCATATCTAAGGATTTCCTTCATTTATTAATAATGTTGCAAGCTGATTCTAGGTTTCAGTGATTAGTTTCAAGAATCAATGATAATTTGGTAATTTGTCTTGGTACCCATTGGAATGGATGAGGTGCGCTTAAGCTAGCTTGGACACCACCATTACGAAAAAATGAAAAATAAAATGGCAATTCTTCTTTTGCAGTTACTCATTAAGAATTTCAGTGATATATCTTTAGTCACGTCATAGCATTTACTTGTTATATATAGGGTCCATTTTGTCTTGAATATCAAATCCTCCCTGTTATCACTCATCTCCAATTATTATGTTTTTGATAAAATCATATAATCATTGTGTTGTTGGATTCCTTTCTCACTTTCTAGTTCTCGTATTTTCATTGTCTGACCTTAGCTACAGAGATAAAGTTGAAAATAGGGAAAAAAACCACGAAGTTTCAAAGTTCGGTACAAAATTTTGGTTACATATGTTGCATTCCTTCATCACTTTTTAGTTCTCGTATTTCCTTTTGATTCTTCATTTAATTGGTTACATATGTTTGAATTTATTAGAGGCTTATCTATATCTTTTCTTCTCTAGATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGC</genome_strand>
        <mrna_strand>GATCCTAAAGTTTGTACCTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAAAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTTTGAAAAGGGAAACATAACAACTGCTGAACGCAGCAGTAAACAA.................................................................................................................................................................ATTTCTTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407630" ref_strand="+" ref_description="SGN-E407630 [PPI-8-A17]">
      <seq>tgtaactgatatattttcagtagagagagaaagagatagttttagagagagaaggagagaggtgtttggtgaattcttgatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaaatgctagtgttctgccactggaaaacacgtttagcgattcgcttgccatgttgaattctgagaaggctgtagaagaacttattcaacagcctattcttcatgggattgatgatcatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaagggaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacgcataatttgcagttagagaataaagcaatgccaccacagaagcatttggatgagaatgggcaagtcgtacacttgacaaacaaacctttactatcagatggtgctgtgaagaaatccgacaggtgttgtggggagcatggaatctgctctcatcaggttcttcgtgatggagaacatgatcatgatgccagtgttgctccaaacaagatggccataaaggcatcattcaagttgtcatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21854" stop="26277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22153" g_stop="22289" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="282" r_length="148" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="402" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25324" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="596" r_length="194" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25325" i_stop="25954" i_length="630">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25955" g_stop="25977" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="619" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E407630" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22153" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25324"/>
          <exon e_start="25955" e_stop="25977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAGGTAGATCCATGTAGACCTATTCTGTTTGCACTATAACTTTCCTTGTTGCTCAACTTTTTGTCTGTCGTGAATTGATTAGTGTGAATATGCTTGATTTGGCCTCACTAGAATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATCATGTTGTAAATGATTTAAATAATGTAAGTGTCCTCATTGTTGAAGGGGATTCTCAGTGCAACTGGTTAAATAAGTTGTTGTCATGTGACCTTGAGTTCGACTTGTGGAAACAGTCTCTTGCAGAAATGTAGGGTAAGGCTGTATACAATAAACTCTTGTGGTCAGACCCTTCCCCGGACCCTGTGCATAGCGGAAGCTTAGTGCGACGAGCTTCCCTATAAGTGTCCTCCGATTGTTACAGACTCCTAGCAGTACTGATTTTGTTAGTTATACAAATTACTTTGAGGCTGTTATTGTCGCAAGATATTTCAATGTCGGTGAATTATTGTGCTTTAATTGCTCAATATTGAATGCAGAATGAACGAGACAAGATCTTTCTGTCCCGTGTCCTATTTGTTATATTCTAATGCTTTTATGGTTTACTCTTGAAATATTGCCTATTAATAATTCATTTAATGAAACAGGCATCATTCAAGTTGTCATGGCG</genome_strand>
        <mrna_strand>TGTAACTGAT-ATATTTTCAGTAGAGAGAGAAAGAGA-TAGTTTTAGAGAGAGAAGGAGAGAGGTGTTTGGTGAATTCTTG-ATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGCTAGTGTTCTGCCACTGGAAAACACGTTTAGCGATTCGCTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCTATTCTTCATGGGATTGATGATCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGGAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACGCATAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCACCACAGAAGCATTTGGATGAGAATGGGCAAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGTGCTGTGAAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATCTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTGCTCCAAACAAGATGGCCATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATTCAAGTTGTCATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212979" ref_strand="+" ref_description="SGN-E212979 [cLEC-72-O13]">
      <seq>actgatcaaattttcagtagagagagaaagagattagttttagagagagaaagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggctttctgcacaagctgaggcttctgaatggaagcgtaaatatgatttggagaggacacgtaatttgcagttagagaataaagcatgccatcggagaagcatttagatgagaatgggcgagtcgtacacttgacaaacaacctttactatcagatggcgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21857" stop="25512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22157" g_stop="22289" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="281" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="402" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25212" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="482" r_length="80" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E212979" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22157" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGC-TTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGT</genome_strand>
        <mrna_strand>ACTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGATTTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAAC-AACCTTTACTATCAGATGGCGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271009" ref_strand="+" ref_description="SGN-E271009 [cLEM-22-F11]">
      <seq>actgatcaaattttcagtccagagagaaagagattagttttagagagagagagagggaagtgtctggtgaattgttgaatttttcatgtcaatgaaacacactactatgtctacaaacaaacacacctgtaatggaagtgcttgtgttttgccactggaaaactcctttagcgaatcacttgccatgtcgaattctgagaaagctgtagaagaacttattcaacagccaattcttcacaggattgatgaccatctgattgagtttgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21857" stop="24653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22157" g_stop="22289" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24353" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="269" r_length="136" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E271009" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22157" e_stop="22289"/>
          <exon e_start="24218" e_stop="24353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCG</genome_strand>
        <mrna_strand>ACTGATCAAATTTTCAGTCCAGAGAGAAAGAGATTAGTTTTAGAGAGAGAGAGAGGGAAGTGTCTGGTGAATTGTTGAATTTTTCATGTCAATGAAACACACTACTATGTCTACAAACAAACACACCTGTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTTGTGTTTTGCCACTGGAAAACTCCTTTAGCGAATCACTTGCCATGTCGAATTCTGAGAAAGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACAGGATTGATGACCATCTGATTGAGTTTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300699" ref_strand="+" ref_description="SGN-E300699 [cLEW-8-I7]">
      <seq>aaattttcagtcgagagagaatgttatttgtttttgagagagaaagagggaagtgttcggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattgtagaggacacgtaatttgcagttcgagaataaagcaatgccatcggagaagcatttagatgagaatgggcgagtcgtacacttgacaaacaaacctttactatcagatggcgctgtggagaaatccgacaggtgttgtggggagcatggaatctgctctcatcaagttctccgtgatggaaaacatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21864" stop="25587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22164" g_stop="22289" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="274" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="394" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25287" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="551" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E300699" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22164" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCA</genome_strand>
        <mrna_strand>AAATTTTCAGTCGAGAGAGAATGTTATTTGTTTTTGAGAGAGAAAGAGGGAAGTGTTCGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGTAGAGGACACGTAATTTGCAGTTCGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATCTGCTCTCATCAAGTTCTCCGTGATGGAAAACATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313059" ref_strand="+" ref_description="SGN-E313059 [cTOA-14-B19]">
      <seq>ttttcagtagagagagaaagagattagttttagagagagaaagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacacgtaatttgcagttagagaataaagcaatgccatcggagaagcatttagatgataatgggcgagtcgtacacttgacaaacaaacctttactatcagatggcgctgtggagaaatccgacaggtgttgtggggagcatggaatttgctctcatcangttcttcgtgatggagaacatgatcatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21867" stop="25592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22167" g_stop="22289" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="271" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="391" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25292" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="553" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E313059" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22167" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATG</genome_strand>
        <mrna_strand>TTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCATCGGAGAAGCATTTAGATGATAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCANGTTCTTCGTGATGGAGAACATGATCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415291" ref_strand="+" ref_description="SGN-E415291 [STM-21-G13]">
      <seq>tttcagtagagagagaaagagatagttttagagagagaaggagagaggtgtttggtgaattcttgatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaaatgctagtgttctgccactggaaaacacgtttagcgattcgcttgccatgttgaattctgagaaggctgtagaagaacttattcaacagcctattcttcatgggattgatgatcatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaagggaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacgcataatttgcagttagagaataaagcaatgccaccagagaagcatttggatgagaatgggcaagtcgtacacttgacaaacaaacctttactatcagatggtgctgtgaagaaatccgacaggtgttgtggggagcatggaatttgctctcatcangttcttcgtgatggagaacatgatcatgatgccagtgttgttccaaacaagatggccagaaaggcatcattcaagttgtcatggtgttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21868" stop="26284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22289" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="268" r_length="148" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="388" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25324" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="582" r_length="194" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25325" i_stop="25954" i_length="630">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25955" g_stop="25984" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="612" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E415291" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25324"/>
          <exon e_start="25955" e_stop="25984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAGGTAGATCCATGTAGACCTATTCTGTTTGCACTATAACTTTCCTTGTTGCTCAACTTTTTGTCTGTCGTGAATTGATTAGTGTGAATATGCTTGATTTGGCCTCACTAGAATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATCATGTTGTAAATGATTTAAATAATGTAAGTGTCCTCATTGTTGAAGGGGATTCTCAGTGCAACTGGTTAAATAAGTTGTTGTCATGTGACCTTGAGTTCGACTTGTGGAAACAGTCTCTTGCAGAAATGTAGGGTAAGGCTGTATACAATAAACTCTTGTGGTCAGACCCTTCCCCGGACCCTGTGCATAGCGGAAGCTTAGTGCGACGAGCTTCCCTATAAGTGTCCTCCGATTGTTACAGACTCCTAGCAGTACTGATTTTGTTAGTTATACAAATTACTTTGAGGCTGTTATTGTCGCAAGATATTTCAATGTCGGTGAATTATTGTGCTTTAATTGCTCAATATTGAATGCAGAATGAACGAGACAAGATCTTTCTGTCCCGTGTCCTATTTGTTATATTCTAATGCTTTTATGGTTTACTCTTGAAATATTGCCTATTAATAATTCATTTAATGAAACAGGCATCATTCAAGTTGTCATGGCGTTGCAAA</genome_strand>
        <mrna_strand>TTTCAGTAGAGAGAGAAAGAGA-TAGTTTTAGAGAGAGAAGGAGAGAGGTGTTTGGTGAATTCTTG-ATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGCTAGTGTTCTGCCACTGGAAAACACGTTTAGCGATTCGCTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCTATTCTTCATGGGATTGATGATCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGGAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACGCATAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCACCAGAGAAGCATTTGGATGAGAATGGGCAAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGTGCTGTGAAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCANGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTGTTCCAAACAAGATGGCCAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATTCAAGTTGTCATGGTGTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475518" ref_strand="+" ref_description="SGN-E475518 [cSTB-40-E2]">
      <seq>tttcagtagagagagaaagagatagttttagagagagaaggagagaggtgtttggtgaattcttgatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaaatgctagtgttctgccactggaaaacacgtttagcgattcgcttgccatgttgaattctgagaaggctgtagaagaacttattcaacagcctattcttcatgggattgatgatcatctgattgactttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaagggaaagcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21868" stop="24842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22289" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="268" r_length="148" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24542" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="353" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E475518" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATT</genome_strand>
        <mrna_strand>TTTCAGTAGAGAGAGAAAGAGA-TAGTTTTAGAGAGAGAAGGAGAGAGGTGTTTGGTGAATTCTTG-ATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGCTAGTGTTCTGCCACTGGAAAACACGTTTAGCGATTCGCTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCTATTCTTCATGGGATTGATGATCATCTGATTGACTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGGAAAGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396481" ref_strand="+" ref_description="SGN-E396481 [TUS-16-G1]">
      <seq>agtagagagagaaagagattagttttagagagagaaagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacacgtaatttgcagttagagaataaagcaatgccatcggagaagcatttagatgagaatgggcgagtcgtacacttgacaaacaaacctttactatcagatggcgctgtggagaaatccgacaggtgttgtggggagcatggaatttgctctcatcaggttcttcgtgatggagaacatgatcatgatgccagtgttattcgaaacaagatgaccaaaaaggcatcattcaagttgtcatggcgttgcaaaggtgaaaaaagtgatcagaaaaaacacgacatcgtctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21872" stop="26325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22172" g_stop="22289" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="266" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="386" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25324" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="580" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25325" i_stop="25954" i_length="630">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25955" g_stop="26025" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="651" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E396481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22172" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25324"/>
          <exon e_start="25955" e_stop="26025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAGGTAGATCCATGTAGACCTATTCTGTTTGCACTATAACTTTCCTTGTTGCTCAACTTTTTGTCTGTCGTGAATTGATTAGTGTGAATATGCTTGATTTGGCCTCACTAGAATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATCATGTTGTAAATGATTTAAATAATGTAAGTGTCCTCATTGTTGAAGGGGATTCTCAGTGCAACTGGTTAAATAAGTTGTTGTCATGTGACCTTGAGTTCGACTTGTGGAAACAGTCTCTTGCAGAAATGTAGGGTAAGGCTGTATACAATAAACTCTTGTGGTCAGACCCTTCCCCGGACCCTGTGCATAGCGGAAGCTTAGTGCGACGAGCTTCCCTATAAGTGTCCTCCGATTGTTACAGACTCCTAGCAGTACTGATTTTGTTAGTTATACAAATTACTTTGAGGCTGTTATTGTCGCAAGATATTTCAATGTCGGTGAATTATTGTGCTTTAATTGCTCAATATTGAATGCAGAATGAACGAGACAAGATCTTTCTGTCCCGTGTCCTATTTGTTATATTCTAATGCTTTTATGGTTTACTCTTGAAATATTGCCTATTAATAATTCATTTAATGAAACAGGCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTT</genome_strand>
        <mrna_strand>AGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206009" ref_strand="+" ref_description="SGN-E206009 [cLEC-20-D5]">
      <seq>gtagagagagaaagagattagttttagagagagaaagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgcctttttaaaagggtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21873" stop="24667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22173" g_stop="22289" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="22609" i_length="320">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.082" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22610" g_stop="22623" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="129" r_length="12" r_score="0.643"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22624" i_stop="24217" i_length="1594">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E206009" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22173" e_stop="22289"/>
          <exon e_start="22610" e_stop="22623"/>
          <exon e_start="24218" e_stop="24365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA</genome_strand>
        <mrna_strand>GTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT................................................................................................................................................................................................................................................................................................................................-GGAAGT-GCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAG--GGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202387" ref_strand="+" ref_description="SGN-E202387 [cLEC-6-J24]">
      <seq>aagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacacgtaatttgcagttagagaataaagcaatgccatcggagaagcatttagatgagaatgggcgagtcgtacacttgacaaacaaacctttactatcagatggcgctgtggagaaatccgacaggtgttgtggggagcatggaatttgctctcatcacgttcttcgtgatggagaacatgatcatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21907" stop="25592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22207" g_stop="22289" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="231" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="351" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25292" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="513" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E202387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22207" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATG</genome_strand>
        <mrna_strand>AAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCACGTTCTTCGTGATGGAGAACATGATCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200718" ref_strand="+" ref_description="SGN-E200718 [cLEC-9-C7]">
      <seq>aagagggaagtgtttggtgaattgttgaatttttcatgtcaatgaaacagactcctatgtctccaaacaaacacacctctaatggaagtgctagtgttttgccactggaaaacgcctttagcgaatcacttgccatgttgaattctgagaaggctgtagaagaacttattcaacagccaattcttcacgggattgatgaccatctgattgagtttgccgaggctttgagaactgtcgcaaaggcactaagacaagctgctgaaggaaaggcttctgcacaagctgaggcttctgaatggaagcgtaaatatgaattggagaggacacgtaatttgcagttagagaataaagcaatgccatcggagaagcatttagatgagaatgggcgagtcgtacacttgacaaacaaacctttactatcagatggcgctgtggagaaatccgacaggtgttgtggggagcatggaatttgctctcatcaggttcttcgtgatggagaacatgatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="21907" stop="25591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22207" g_stop="22289" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928">
            <donor d_prob="0.060" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24218" g_stop="24365" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="231" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24577" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="351" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25131" g_stop="25291" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="512" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E200718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22207" e_stop="22289"/>
          <exon e_start="24218" e_stop="24365"/>
          <exon e_start="24458" e_stop="24577"/>
          <exon e_start="25131" e_stop="25291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAATGTAAGCTTACCCTCCCACCCCCCACCCCCACCCCACCCACCCCCCTTTTTTTTTGTTTGAGTTTTTAATTTATTTTTCCAATATGAAATCTGTTGAATTTAACTGAATTTTATAGTTCTATTGAATGGAGAATTGTTTGGTTTAGCTGAATTGTTGATTAAATATAGAAAATCTATCATTGGTCATTTCGCAAGTCAATTGAGTTGTTAATTGTGGTGATTTATAGTACTTTTTTACGTAGTTTTTTTGGAGGCAAATTGTTATAAGGTGTTAGGACTTTGAATCTCGAAATTTGAACTGTGTCACGTAAATTGGGACAGAGGGAGTAGATTTTGTTAGAATGTATGGTTTTTGCTTAGATATAAGTCAATGGCATGTAGAAATGATTTCTAGTAGTTTCTTTTGGGTGATTGAGATAGTTGAATTAATGATTTATGAAATAATCATGGTTAATTGGAAGTTTTTATATGCATTAATGACAAGTGTTGTTATCGAGGGAGATGTTTTGGGGGTATTAGCTCCATCGGTGGTAGAGTCAGGATTTTTATTAAGGGGTGTTTGCAGGATAAAGTAGACACAGGGAAGTCAACATATAGTATAGGCATAAAGCAAAAAAAGAAAAATTTGACCTAGCTAAATAGTGTAATTTTCGGGGAAAGGGTGTTGTTTGACGCCCCTTACCAAGCACGGTGGAAGCGTGGTGATTGACTTTTTTTCCTTGTTAAATTGGAATGGCTAAGGTGGACATTTTTTGAGCAATTTCATTGTTGCATCAAGCTATTTCGATGATCAATTGAACTATAGGATCCTCCGAATTGCTTTAGCTACTACGATATTGAGTGTTGTCATTTAGCGTATTCAAGAAAATCTTAAGACTTTAGGTTGAATCCTCATCGGTAAGTCTGTTCTCATTAAATCTTGCATTTTCTCTCTTTACTGAACTTATTGAGCGATTAGCTCTGCTCCAGGCTAACGTTTTATTATGTCAACCACTTCAAACTCCAAAGAATTAAGCTCGTTGAGCCCCTAAAGAGAAAAATAAAATCATTAGTAGACATGTCGATCCTAAAACGAGTTACATGTTCAGAAGAGTATGAGAGATATATAATAACTTTTCTGAAATGTAATGGTTGTGTTCATATCATTTCACTCTATTTATTCTTATAGCTAGTTGATGAACTTTCCCTAGACTTTTCTTTACTGCAAACCTATTTTTATGTTATGATTCACTTAAGTTCCTCCCTGTGAAAAATTCGTGGACGCTCTCTATATCTCGGGACTTTTTATCAGCTCATGATATCCAATTCATGATCAAAATATTTGGAGAGACTCCACTTTTGTTTTCAATTTGTTTCTTGAAATGAAGATAATCCTGTTTTATGCATCTGATTTTAAGATAATGTTTTATGGTAATTTAGTATTAATAATGAGTAGCAGCTGCGAGTTCCTTGTCAACATAAAGAAAATAATGAATAGAAGTACGAGATACAGGGAACGGAAAAGGCACAAGATGAAATAATGTGATCTTACAGTTTTTTAAGTTCGGTCTCCTTCTAAGGTTTAGATATTGTTTAAACTAAAACCAGTATACTAACATCACGTACGAGGGTATGTTCGTTTATTTTTATTTTTATTTTCTTAAAAATGTCATCTATGAAATGTTGCGCGAGTACTGTTGTACACGAAGTATGTTGAAGCTCTTTCTGGCCTATTGCATTTCACAATAATCGACAAAACTTTTAAAAGTTTCATAAGAACTTATGATATTTAATCTCTTCTTCTATGAATGCAACGCCTCTTGTTTGTTGAGATTCTGATGATCTATTATATCTACGACGCTTCCTTGTGTATTAGACATTGATACTGTGTTTTGTACATTACTCGTTGTCTTTGTCTCTATAACATCCTGCAATGCTTTTTCTAAATAGGGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAAGTATGATCTGCTTTTGCTATGATTACTTATTTGGCGGTGTTTGGAATTTGCAACACTATATGATACAAATATTTTTCTCTTCCATTTATTAGCTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAGGTACTCCCCCAAAGAGGACTTTTGTGTTACTATAAAACATATGTTGTTGCAGCAGTTGCATACAGCTGAAATTTATTTATGTGTTGTTCACTGGTTGCCTCTCAATCTTTGTTTCTCTCGTCTAAGATCACCTTTCCTATTCTTCATGGGTACCGGATCCATGTATAATCGTATCTAAGTATTGATCCATTTCTCCTTTCAAACAAACTGTTACTCTATCTTCTACTTTTTCTCACAAAGTAATAAAATCTTATCAAAGCTAACGATCACAATATCTTTCTAGTGTTAGGAACACCAATTACTAAAATGCTTGCTTAGACATTATAGCTTAAATTATTGTCTACTGCTTTTTCTCGTAAAGTAAATAAAATCTTTATCAATGAAATGATGATCCCAAATAGGAACGTCGATTACTAAAATGCTTGCTTAGATGTTCTAGCTGAATCCTCTATTTTTGTTAAATCCCAAATTGAAGCACTAAATGGTTTCTATCGAATTACATTTGTTAGTAGAATCCTTGCTTTATGGTAAAATAAGTTGGCTTCCATTGTAGCAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGAT</genome_strand>
        <mrna_strand>AAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA............................................................................................CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247185" ref_strand="+" ref_description="SGN-E247185 [cLEF-46-L18]">
      <seq>aatccgacaggtgttgtggggagcatggaacttgctctcatcaagttcttcgtgatggagaacatgatcatgatgccagtgttattcgaaacaagatgaccagaaaggcatcattcaagttgtcatggcgttgcaaaggtgaaaaaagtgatcagaaaaaacacgacatcgtctcttttgaaaagggaaacataacaactgctgaacgcagcagtaaacaaatttctttgaagtgggaatctcccccacaaacggtgcttatattgacaaagccaaattcaacttctgttagaatactttgttcagaattggtcagatggctaaaagagcagaaaagcttgaacattgtcgttgaaccgcgggtgcgcactgaacttctaacagagtcgtcgtactaccagtttgtacaaacttgggaaaatgacaaggaaattatgtctctccactcaaaggttgatcttgttgtaactctcggtggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="24918" stop="28610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25218" g_stop="25324" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25325" i_stop="25954" i_length="630">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25955" g_stop="26068" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="221" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26069" i_stop="26229" i_length="161">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26230" g_stop="26324" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="316" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26325" i_stop="27512" i_length="1188">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27513" g_stop="27619" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="423" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27620" i_stop="28250" i_length="631">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28251" g_stop="28310" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="483" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E247185" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25218" e_stop="25324"/>
          <exon e_start="25955" e_stop="26068"/>
          <exon e_start="26230" e_stop="26324"/>
          <exon e_start="27513" e_stop="27619"/>
          <exon e_start="28251" e_stop="28310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAGGTAGATCCATGTAGACCTATTCTGTTTGCACTATAACTTTCCTTGTTGCTCAACTTTTTGTCTGTCGTGAATTGATTAGTGTGAATATGCTTGATTTGGCCTCACTAGAATTTTTATATATATATATATATATATATATATATATATATATATATATATATATATCATGTTGTAAATGATTTAAATAATGTAAGTGTCCTCATTGTTGAAGGGGATTCTCAGTGCAACTGGTTAAATAAGTTGTTGTCATGTGACCTTGAGTTCGACTTGTGGAAACAGTCTCTTGCAGAAATGTAGGGTAAGGCTGTATACAATAAACTCTTGTGGTCAGACCCTTCCCCGGACCCTGTGCATAGCGGAAGCTTAGTGCGACGAGCTTCCCTATAAGTGTCCTCCGATTGTTACAGACTCCTAGCAGTACTGATTTTGTTAGTTATACAAATTACTTTGAGGCTGTTATTGTCGCAAGATATTTCAATGTCGGTGAATTATTGTGCTTTAATTGCTCAATATTGAATGCAGAATGAACGAGACAAGATCTTTCTGTCCCGTGTCCTATTTGTTATATTCTAATGCTTTTATGGTTTACTCTTGAAATATTGCCTATTAATAATTCATTTAATGAAACAGGCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTTTGAAAAGGGAAACATAACAACTGCTGAACGCAGCAGTAAACAAGTATGTCTACTTGTACAGTTTTCTTGCCTTGTTTGGCGATGATAACAGAACTTCAAATGAATACCTTAGGCGCTTTAAAATATGCTTTCCGCTAAACAAACTTATCGAAAAACACTTGTGTCTGAGCGGGGAATCATTTGTTTATTCTTTCTCTTTTTCAGATTTCTTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAGGTAGAATATTAGAGTATAATCATTTTTTTTATCCGCTTTTGGTCTTTCTGTGAAAAAATGTACTAGAACGCAATGGTAATGCTTGTTTTTACGCTAAACGTTTGTAAGGTTAACCCTCGGCAGATATAGGACTGGTCAAATGATTTGCTTGAATTAGATAAATAGATCTTTAACAGCTAACGTTTTCAAGCAGAAGGTAACTAGTTACATCAGTTAACATGTCCGTCTGTTCGAGTTTGAGTTTCCTCATCATTCATCACCCGACATTCCAATAGTTCTTACATGCTCGGCCTCACAAGACTTAACGATAAATGTCATCCTCTAACAACACACATCTAGCTTTAGCTTCTTTTCTGAGATTCTTGTGTGCGTTGTCCTTTCCTTTTTTGGGAACTTCCAAAATGGTTACCTCGTTTTAATCAACTAAATAGGAAATTCAGAGTATGCTTAGCAAAATAGCAATGTTGTTAGATAGACTCCCTTCTTAAATACACGTTTCCCAAAGGGACGGATTCACCTATTTTTGTGCTTGGGGGATGATTTGGAACGAAAATCAAATAAGAAGAGAAAATCATTACTTTTATATGGGAAAGCCTCGAAGCATATCTAAGGATTTCCTTCATTTATTAATAATGTTGCAAGCTGATTCTAGGTTTCAGTGATTAGTTTCAAGAATCAATGATAATTTGGTAATTTGTCTTGGTACCCATTGGAATGGATGAGGTGCGCTTAAGCTAGCTTGGACACCACCATTACGAAAAAATGAAAAATAAAATGGCAATTCTTCTTTTGCAGTTACTCATTAAGAATTTCAGTGATATATCTTTAGTCACGTCATAGCATTTACTTGTTATATATAGGGTCCATTTTGTCTTGAATATCAAATCCTCCCTGTTATCACTCATCTCCAATTATTATGTTTTTGATAAAATCATATAATCATTGTGTTGTTGGATTCCTTTCTCACTTTCTAGTTCTCGTATTTTCATTGTCTGACCTTAGCTACAGAGATAAAGTTGAAAATAGGGAAAAAAACCACGAAGTTTCAAAGTTCGGTACAAAATTTTGGTTACATATGTTGCATTCCTTCATCACTTTTTAGTTCTCGTATTTCCTTTTGATTCTTCATTTAATTGGTTACATATGTTTGAATTTATTAGAGGCTTATCTATATCTTTTCTTCTCTAGATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATGGTAAGTGGTAAAACTTTTACCTTTAGATAAAGTAAGCTAAAAAGTGTATATAACTCTTCGAATCTTCACTTTAACGTTATGTTGTGTGGCCAAATCTTGGATTATGGATTCATTTTTTGCCTTTTTTTTAAAAATCTGTTTAGGCTTTTCGTGTGTGGAAATTATTACTGATGATCTGGTCCTTTTTCGATTAACAACTCAAAACAAGCATCCGCTTTGTTGCTTTTGTTATCTTACCGTACTATTGTGTAGTTTTAAGTTTGTTCGCCATTTTAACCGAGAAGCAACCATTTTCTCGTAAAACTTTTCTGCTTACCTAAATGTCAGCTATTACGAGACTTCTTCTTTCCCTTTCAACCAACTTCAAGCTATGTTGCTCGGTCTCTCCAAAAATGATGCTGCATCCGTGTCGGATCCTTCAAACATGCCTTAGTTCTGAAGGATCCGAAACACACCCATCGACATTTTTTGAAGAGTCCGAGCTACATAGACTTCAAGTACAGATGAGCACATGTAATCTCTAGAGATGTTGTGGATGAGAAGCTTAAAATAGTAACAATGTTTTTGTCGTATCTGTTATAATTATGAAAAGATAATGCTAATTGGTACGGTAACTTCTTGTTTGTCGCAGACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATG</genome_strand>
        <mrna_strand>AATCCGACAGGTGTTGTGGGGAGCATGGAACTTGCTCTCATCAAGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTTTGAAAAGGGAAACATAACAACTGCTGAACGCAGCAGTAAACAA.................................................................................................................................................................ATTTCTTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTTCTGTTAGAATACTTTGTTCAGAATTGGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205751" ref_strand="+" ref_description="SGN-E205751 [cLEC-21-F4]">
      <seq>tttgaagtgggaatctcccccacaaacggtgcttatattgacaaagccaaattcaactgctgttagaatactttgttcagaattggtcagatggctaaaagagcagaaaagcttgaacattgtcgttgaaccgcgggtgcgcactgaacttctaacagagtcgtcgtactaccagtttgtacaaacttgggaaaatgacaaggaaattatgtctctccactcaaaggttgatcttgttgtaactctcggtggggatggaaccgtcctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttgtatccttttcttccttttaaaagattttcgttcatatatgtggtatacgtaggctacaatgtgctactctaattacatcattacatggaaataaaagaaatgaaaccgaactcctatcgatagatatataaacctgtcttttaaacatacaacacagaagcctgagtattactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="25935" stop="28997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26235" g_stop="26324" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26325" i_stop="27512" i_length="1188">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27513" g_stop="27619" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="197" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27620" i_stop="28250" i_length="631">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28251" g_stop="28324" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="271" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28441" g_stop="28697" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="528" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E205751" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26235" e_stop="26324"/>
          <exon e_start="27513" e_stop="27619"/>
          <exon e_start="28251" e_stop="28324"/>
          <exon e_start="28441" e_stop="28697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAGGTAGAATATTAGAGTATAATCATTTTTTTTATCCGCTTTTGGTCTTTCTGTGAAAAAATGTACTAGAACGCAATGGTAATGCTTGTTTTTACGCTAAACGTTTGTAAGGTTAACCCTCGGCAGATATAGGACTGGTCAAATGATTTGCTTGAATTAGATAAATAGATCTTTAACAGCTAACGTTTTCAAGCAGAAGGTAACTAGTTACATCAGTTAACATGTCCGTCTGTTCGAGTTTGAGTTTCCTCATCATTCATCACCCGACATTCCAATAGTTCTTACATGCTCGGCCTCACAAGACTTAACGATAAATGTCATCCTCTAACAACACACATCTAGCTTTAGCTTCTTTTCTGAGATTCTTGTGTGCGTTGTCCTTTCCTTTTTTGGGAACTTCCAAAATGGTTACCTCGTTTTAATCAACTAAATAGGAAATTCAGAGTATGCTTAGCAAAATAGCAATGTTGTTAGATAGACTCCCTTCTTAAATACACGTTTCCCAAAGGGACGGATTCACCTATTTTTGTGCTTGGGGGATGATTTGGAACGAAAATCAAATAAGAAGAGAAAATCATTACTTTTATATGGGAAAGCCTCGAAGCATATCTAAGGATTTCCTTCATTTATTAATAATGTTGCAAGCTGATTCTAGGTTTCAGTGATTAGTTTCAAGAATCAATGATAATTTGGTAATTTGTCTTGGTACCCATTGGAATGGATGAGGTGCGCTTAAGCTAGCTTGGACACCACCATTACGAAAAAATGAAAAATAAAATGGCAATTCTTCTTTTGCAGTTACTCATTAAGAATTTCAGTGATATATCTTTAGTCACGTCATAGCATTTACTTGTTATATATAGGGTCCATTTTGTCTTGAATATCAAATCCTCCCTGTTATCACTCATCTCCAATTATTATGTTTTTGATAAAATCATATAATCATTGTGTTGTTGGATTCCTTTCTCACTTTCTAGTTCTCGTATTTTCATTGTCTGACCTTAGCTACAGAGATAAAGTTGAAAATAGGGAAAAAAACCACGAAGTTTCAAAGTTCGGTACAAAATTTTGGTTACATATGTTGCATTCCTTCATCACTTTTTAGTTCTCGTATTTCCTTTTGATTCTTCATTTAATTGGTTACATATGTTTGAATTTATTAGAGGCTTATCTATATCTTTTCTTCTCTAGATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATGGTAAGTGGTAAAACTTTTACCTTTAGATAAAGTAAGCTAAAAAGTGTATATAACTCTTCGAATCTTCACTTTAACGTTATGTTGTGTGGCCAAATCTTGGATTATGGATTCATTTTTTGCCTTTTTTTTAAAAATCTGTTTAGGCTTTTCGTGTGTGGAAATTATTACTGATGATCTGGTCCTTTTTCGATTAACAACTCAAAACAAGCATCCGCTTTGTTGCTTTTGTTATCTTACCGTACTATTGTGTAGTTTTAAGTTTGTTCGCCATTTTAACCGAGAAGCAACCATTTTCTCGTAAAACTTTTCTGCTTACCTAAATGTCAGCTATTACGAGACTTCTTCTTTCCCTTTCAACCAACTTCAAGCTATGTTGCTCGGTCTCTCCAAAAATGATGCTGCATCCGTGTCGGATCCTTCAAACATGCCTTAGTTCTGAAGGATCCGAAACACACCCATCGACATTTTTTGAAGAGTCCGAGCTACATAGACTTCAAGTACAGATGAGCACATGTAATCTCTAGAGATGTTGTGGATGAGAAGCTTAAAATAGTAACAATGTTTTTGTCGTATCTGTTATAATTATGAAAAGATAATGCTAATTGGTACGGTAACTTCTTGTTTGTCGCAGACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATGGAACCGTCCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTC</genome_strand>
        <mrna_strand>TTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATGGAACCGTCCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTTAAACATACAACACAGAAGCCTGAGTATTACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205602" ref_strand="+" ref_description="SGN-E205602 [cLEC-21-D1]">
      <seq>tttgaagtgggaatctcccccacaaacggtgcttatattgacaaagccaaattcaactgctgttagaatactttgttcagaattggtcagatggctaaaagagcagaaaagcttgaacattgtcgttgaaccgcgggtgcgcactgaacttctaacagagtcgtcgtactaccagtttgtacaaacttgggaaaatgacaaggaaattatgtctctccactcaaaggttgatcttgttgtaactctcggtggggatggaaccgtcctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaagttctcttggcttcatgaccccgttttgtatccttttcttccttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="25935" stop="28841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26235" g_stop="26324" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26325" i_stop="27512" i_length="1188">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27513" g_stop="27619" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="197" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27620" i_stop="28250" i_length="631">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28251" g_stop="28324" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="271" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28441" g_stop="28541" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="372" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E205602" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26235" e_stop="26324"/>
          <exon e_start="27513" e_stop="27619"/>
          <exon e_start="28251" e_stop="28324"/>
          <exon e_start="28441" e_stop="28541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAGGTAGAATATTAGAGTATAATCATTTTTTTTATCCGCTTTTGGTCTTTCTGTGAAAAAATGTACTAGAACGCAATGGTAATGCTTGTTTTTACGCTAAACGTTTGTAAGGTTAACCCTCGGCAGATATAGGACTGGTCAAATGATTTGCTTGAATTAGATAAATAGATCTTTAACAGCTAACGTTTTCAAGCAGAAGGTAACTAGTTACATCAGTTAACATGTCCGTCTGTTCGAGTTTGAGTTTCCTCATCATTCATCACCCGACATTCCAATAGTTCTTACATGCTCGGCCTCACAAGACTTAACGATAAATGTCATCCTCTAACAACACACATCTAGCTTTAGCTTCTTTTCTGAGATTCTTGTGTGCGTTGTCCTTTCCTTTTTTGGGAACTTCCAAAATGGTTACCTCGTTTTAATCAACTAAATAGGAAATTCAGAGTATGCTTAGCAAAATAGCAATGTTGTTAGATAGACTCCCTTCTTAAATACACGTTTCCCAAAGGGACGGATTCACCTATTTTTGTGCTTGGGGGATGATTTGGAACGAAAATCAAATAAGAAGAGAAAATCATTACTTTTATATGGGAAAGCCTCGAAGCATATCTAAGGATTTCCTTCATTTATTAATAATGTTGCAAGCTGATTCTAGGTTTCAGTGATTAGTTTCAAGAATCAATGATAATTTGGTAATTTGTCTTGGTACCCATTGGAATGGATGAGGTGCGCTTAAGCTAGCTTGGACACCACCATTACGAAAAAATGAAAAATAAAATGGCAATTCTTCTTTTGCAGTTACTCATTAAGAATTTCAGTGATATATCTTTAGTCACGTCATAGCATTTACTTGTTATATATAGGGTCCATTTTGTCTTGAATATCAAATCCTCCCTGTTATCACTCATCTCCAATTATTATGTTTTTGATAAAATCATATAATCATTGTGTTGTTGGATTCCTTTCTCACTTTCTAGTTCTCGTATTTTCATTGTCTGACCTTAGCTACAGAGATAAAGTTGAAAATAGGGAAAAAAACCACGAAGTTTCAAAGTTCGGTACAAAATTTTGGTTACATATGTTGCATTCCTTCATCACTTTTTAGTTCTCGTATTTCCTTTTGATTCTTCATTTAATTGGTTACATATGTTTGAATTTATTAGAGGCTTATCTATATCTTTTCTTCTCTAGATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATGGTAAGTGGTAAAACTTTTACCTTTAGATAAAGTAAGCTAAAAAGTGTATATAACTCTTCGAATCTTCACTTTAACGTTATGTTGTGTGGCCAAATCTTGGATTATGGATTCATTTTTTGCCTTTTTTTTAAAAATCTGTTTAGGCTTTTCGTGTGTGGAAATTATTACTGATGATCTGGTCCTTTTTCGATTAACAACTCAAAACAAGCATCCGCTTTGTTGCTTTTGTTATCTTACCGTACTATTGTGTAGTTTTAAGTTTGTTCGCCATTTTAACCGAGAAGCAACCATTTTCTCGTAAAACTTTTCTGCTTACCTAAATGTCAGCTATTACGAGACTTCTTCTTTCCCTTTCAACCAACTTCAAGCTATGTTGCTCGGTCTCTCCAAAAATGATGCTGCATCCGTGTCGGATCCTTCAAACATGCCTTAGTTCTGAAGGATCCGAAACACACCCATCGACATTTTTTGAAGAGTCCGAGCTACATAGACTTCAAGTACAGATGAGCACATGTAATCTCTAGAGATGTTGTGGATGAGAAGCTTAAAATAGTAACAATGTTTTTGTCGTATCTGTTATAATTATGAAAAGATAATGCTAATTGGTACGGTAACTTCTTGTTTGTCGCAGACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATGGAACCGTCCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAA</genome_strand>
        <mrna_strand>TTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATGGAACCGTCCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAAGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241806" ref_strand="+" ref_description="SGN-E241806 [cLED-27-E3]">
      <seq>cctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcgtattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacaccgatctgcccacattgtgtatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28140" stop="29888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28318" g_stop="28324" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28441" g_stop="28519" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28722" g_stop="29029" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="394" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29433" g_stop="29588" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="550" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E241806" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28318" e_stop="28324"/>
          <exon e_start="28441" e_stop="28519"/>
          <exon e_start="28722" e_stop="29029"/>
          <exon e_start="29433" e_stop="29588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCA</genome_strand>
        <mrna_strand>CCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCGTATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCGATCTGCCCACATTGTGTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233419" ref_strand="+" ref_description="SGN-E233419 [cLED-9-H13]">
      <seq>cctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28140" stop="29859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28318" g_stop="28324" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28441" g_stop="28519" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28722" g_stop="29029" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="394" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29433" g_stop="29559" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="521" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E233419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28318" e_stop="28324"/>
          <exon e_start="28441" e_stop="28519"/>
          <exon e_start="28722" e_stop="29029"/>
          <exon e_start="29433" e_stop="29559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCAT</genome_strand>
        <mrna_strand>CCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240116" ref_strand="+" ref_description="SGN-E240116 [cLED-32-M6]">
      <seq>cctttgggcagcttcaatgttcaaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28140" stop="29319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28318" g_stop="28324" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28441" g_stop="28519" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28722" g_stop="29019" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="384" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E240116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28318" e_stop="28324"/>
          <exon e_start="28441" e_stop="28519"/>
          <exon e_start="28722" e_stop="29019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGGGTACGTAGCTAGTTTTGTCTTTTTCTTAACTAGAATTTTATATTCTACCATGTGGTTTTGATAAACATTTCATGGCGGGAGAGTGCTTAATAATTGCAACATATTTTATATTGCAGGCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGT</genome_strand>
        <mrna_strand>CCTTTGG....................................................................................................................GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241387" ref_strand="+" ref_description="SGN-E241387 [cLED-28-L5]">
      <seq>caaaggtccagttcctccggttgttccattttctttaggttctcttggcttcatgaccccgttttatagtgagcgttacaaggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28155" stop="29914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28455" g_stop="28519" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28722" g_stop="29029" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="373" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29433" g_stop="29614" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="555" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E241387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28455" e_stop="28519"/>
          <exon e_start="28722" e_stop="29029"/>
          <exon e_start="29433" e_stop="29614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTCTCTGTTTAGCTTTAACATTTCCAGATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCAT</genome_strand>
        <mrna_strand>CAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT..........................................................................................................................................................................................................ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553629" ref_strand="-" ref_description="SGN-E553629 [cTSC-1-L2]">
      <seq>acaaggaatatctcgattcaattcttcgtggtcccataagcataacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatctggtaaggaaatgagaggttttccgaatatgacttgtttcgaagcagagagatcttgatacatatatacacctatatatatatataagttcaaatgtagaactaactatgaggatgatgagtctcaactttaggtgctttattgttgtttttaacttagacatataattacaataataagaatatagaaggaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28434" stop="30260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28734" g_stop="29029" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29960" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="824" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E553629" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553629" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28734" e_stop="29029"/>
          <exon e_start="29433" e_stop="29960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTT</genome_strand>
        <mrna_strand>ACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATAACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307953" ref_strand="+" ref_description="SGN-E307953 [cLEZ-7-P4]">
      <seq>ggaatatctcgattcaattcttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaagggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28438" stop="29835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28738" g_stop="29029" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29535" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="395" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E307953" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28738" e_stop="29029"/>
          <exon e_start="29433" e_stop="29535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACA</genome_strand>
        <mrna_strand>GGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAAGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376904" ref_strand="+" ref_description="SGN-E376904 [TUS-19-N1]">
      <seq>ttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatcttgtaaggaaatgagaggtttttcgaatatgacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28458" stop="30100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28758" g_stop="29029" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29800" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="640" r_length="368" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E376904" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28758" e_stop="29029"/>
          <exon e_start="29433" e_stop="29800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGT</genome_strand>
        <mrna_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTTGTAAGGAAATGAGAGGTTTTTCGAATATGACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232956" ref_strand="+" ref_description="SGN-E232956 [cLED-6-A24]">
      <seq>ttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatctggtaaggaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28458" stop="30078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28758" g_stop="29029" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29778" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="618" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E232956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28758" e_stop="29029"/>
          <exon e_start="29433" e_stop="29778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAG</genome_strand>
        <mrna_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240235" ref_strand="+" ref_description="SGN-E240235 [cLED-25-D13]">
      <seq>ttcgtggtcccataagcattacactgaggcatcgtctccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28458" stop="29896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28758" g_stop="29029" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29596" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="436" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E240235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28758" e_stop="29029"/>
          <exon e_start="29433" e_stop="29596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGA</genome_strand>
        <mrna_strand>TTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203626" ref_strand="+" ref_description="SGN-E203626 [cLEC-15-D24]">
      <seq>tccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgcgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28494" stop="29913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28794" g_stop="29029" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29613" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="417" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E203626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28794" e_stop="29029"/>
          <exon e_start="29433" e_stop="29613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCA</genome_strand>
        <mrna_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGCGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205099" ref_strand="+" ref_description="SGN-E205099 [cLEC-16-I5]">
      <seq>tccagtgtcacgtgattagagattcagctaaaagtgatctggatagtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28494" stop="29901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28794" g_stop="29029" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29601" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="405" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E205099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28794" e_stop="29029"/>
          <exon e_start="29433" e_stop="29601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCC</genome_strand>
        <mrna_strand>TCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597920" ref_strand="+" ref_description="SGN-E597920 [73586]">
      <seq>gtgaagagcccatacttgttctcaacgaagtcacaattgaccgtgggatttcatcatttttaacaaatctagaatgctattgcgataattcttttgttacctgcgtacaaggggatggcttaattttgtcgacaacatctggaagcactgcatattctcttgcagctggaggatcaatggtccatcctcaggttcctggcatcctctttacacctatctgcccacattctttatcctttcgtcctctcattttgcccgagtatgtgacaatccgagtacaagtacctttcaacagtagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggctacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacgtagcatacacgaaggtcttcactggaatttgaggaagacgcagtcttttgatggccctcgtgagacatgatcatctgtactaaccgtttatctgataaggaaatgagaggttttccgaatatgtcttatttcaaagcagagagatcatgatacatatatacacctatatatatataagttcaaatgtagacttaactatgaggatgatgagtctcaactttaggtgctttatggtgttgtaacttagacatataatcataataataagaatatagaaggaagtttgtaccaaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28539" stop="30266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28839" g_stop="29029" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29972" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="727" r_length="536" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E597920" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28839" e_stop="29029"/>
          <exon e_start="29433" e_stop="29972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTT</genome_strand>
        <mrna_strand>GTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACCTGCGTACAAGGGGATGGCTTAATTTTGTCGACAACATCTGGAAGCACTGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGTCCTCTCATTTTGCCCGAGTATGTGACAATCCGAGTACAAGTACCTTTCAACAGTAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCTACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGTAGCATACACGAAGGTCTTCACTGGAATTTGAGGAAGACGCAGTCTTTTGATGGCCCTCGTGAGACATGATCATCTGTACTAACCGTTTATCTGATAAGGAAATGAGAGGTTTTCCGAATATGTCTTATTTCAAAGCAGAGAGATCATGATACATATATACACC--TATATATATATAAGTTCAAATGTAGACTTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTA-TGGTG-TTGTAACTTAGACATATAATCATAATAATAAGAATATAGAAGGAAGTTTGTACCAAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376903" ref_strand="+" ref_description="SGN-E376903 [TUS-19-N1](-)">
      <seq>tttcatcatttttaacaaatctaaaatgctattccgataattcttttgttacttgggtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctctactaaccatttatctggtaaggaaatgagaggttttccgaatatgacttgtttcgaagcagagagatcttgatacatatatacccctatatatatatataagttcaaatgtagaactaactatgaggatgatgagtctcaactttaggtgctttattgttgtttttaacttagacatataattacaataataagaatatagaaggaagtttataccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28587" stop="42386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28887" g_stop="29029" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29963" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="674" r_length="531" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29964" i_stop="30013" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30014" g_stop="30040" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="701" r_length="27" r_score="0.407"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E376903" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28887" e_stop="29029"/>
          <exon e_start="29433" e_stop="29963"/>
          <exon e_start="30014" e_stop="30040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTTTTGTTTAGTTATTTTTATGCGAAATTTTCGCGTATCGACAGGTGAGTGATAAAAAGATCTATGGGAAG</genome_strand>
        <mrna_strand>TTTCATCATTTTTAACAAATCTAAAATGCTATTCCGATAATTCTTTTGTTACTTGGGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACCCCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATA..................................................CCAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391524" ref_strand="+" ref_description="SGN-E391524 [TUS-16-G1](-)">
      <seq>gttacttgcgtacaaggggatggcttaattttatcgacaacatctggaagcacagcatattctcttgcagctggaggatcaatggtccatcctcaggttcccggcatcctctttacacctatctgcccacattctttatcctttcgccctctcattttgcccgagtatgtgacaatacgagtacaagtacctttcaacagcagaggtcatgcatgggcgtcatttgatggaaaagacaggaaaaagttagcaccgggagacgcccttgtttgtagcatggcaacttggcctgtaccaactgcatgtcaagctgattccaccagtgactttttacggagcatacatgaaggtcttcactggaatttgaggaagacgcaatcttttgatggccctcgtgagacgtgatcatctttactaaccatttatctggtaaggaaatgagaggttttccgaatatgacttgtttcgaagcagagagatcttgatacatatatacacctatatatatatataagttcaaatgtagaactaactatgaggatgatgagtctcaactttaggtgctttattgttgtttttaacttagacatataattacaataataagaatatagaaggaagtttataccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="28634" stop="42384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28934" g_stop="29029" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29433" g_stop="29966" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="630" r_length="534" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29967" i_stop="30216" i_length="250">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30217" g_stop="30229" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="643" r_length="13" r_score="0.462"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E391524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28934" e_stop="29029"/>
          <exon e_start="29433" e_stop="29966"/>
          <exon e_start="30217" e_stop="30229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAGGTAAATCCTCTCATACTCGTCACTTTTATAACGATTTATCTCAAGCTGACATGATTTGTTTTAATAAGCTACTGCTGGTTAGTAATAATTCTGGACGTGTTATAAGTTATCCGGGTCTAACAGTTATTTTACTGCAACTTAGGCTGAGTGTCTGTTGGAAAAACCCCTCTACCTTTAAGGTAGGGGTAAGGTTTGCGTACAATTTACCCTTCCCAGACCTCACTTTGTGGGATTACACTGAATATGTTGTTGTCGTAGATAGATTTTTGCTTCCATGTTTAGTATTTCATTTTGCAATTAGCACAATGACGATGCAATGTGTTTTTCCATAGTTATCTCTATTTGATGTCTTTCGAGTTGATTATAACCTTAACAGCATTACTGTTATGACCAAAAATTGCAGGTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTTTTGTTTAGTTATTTTTATGCGAAATTTTCGCGTATCGACAGGTGAGTGATAAAAAGATCTATGGGAAGGAATTAGCATACTGACTCGCTTTCATCCTTCGTGTTCAGGGGCGTAGCTATGTTATAGTCAGTGTGTACAATTAGACACCTTTTGTTGAGAAGTATCGTATACATAAGTAAAATGATACATGAAGTGATTAAATAACATAATTTGAATACCTTTCGTGAATCTCTCCTTTTGACAGAATCTCATTAACA</genome_strand>
        <mrna_strand>GTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTTTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCA..........................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415292" ref_strand="+" ref_description="SGN-E415292 [STM-21-G13]">
      <seq>aacttccttctatatttttattattatgattatatgtctaagttacaaacaacaataaagcacctaaagttgagactcatcatcctcatagttaattctacatttgaacttatatatatataggtgtatatatgtatcatgatccctctgcttcgaaacaagacatattcggaaaacctctcatttccttatcagataaacggttagaacatatgatcatgtctctcgagggccatcaaaagattgcgtcttcctcaaattccagtgaagaccttcgtgtatgctgcgtaaaaagtcactggtggaatcagcttgacatgcagttggtacaggccaagtagccattgctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="-" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="30259" stop="29305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29959" g_stop="29605" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="-" ref_id="SGN-E415292" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29959" e_stop="29605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCCTTCTATATTCTTATTATTGTAATTATATGTCTAAGTTAAAAACAACAATAAAGCACCTAAAGTTGAGACTCATCATCCTCATAGTTAGTTCTACATTTGAACTTATATATATATATAGGTGTATATATGTATCAAGATCTCTCTGCTTCGAAACAAGTCATATTCGGAAAACCTCTCATTTCCTTACCAGATAAATGGTTAGTAGAGATGATCACGTCTCACGAGGGCCATCAAAAGATTGCGTCTTCCTCAAATTCCAGTGAAGACCTTCATGTATGCTCCGTAAAAAGTCACTGGTGGAATCAGCTTGACATGCAGTTGGTACAGGCCAAGTTGCCA-TGCTACAAA</genome_strand>
        <mrna_strand>AACTTCCTTCTATATTTTTATTATTATGATTATATGTCTAAGTTACAAACAACAATAAAGCACCTAAAGTTGAGACTCATCATCCTCATAGTTAATTCTACATTTGAACTTATATATATAT--AGGTGTATATATGTATCATGATCCCTCTGCTTCGAAACAAGACATATTCGGAAAACCTCTCATTTCCTTATCAGATAAACGGTTAGAACATATGATCATGTCTCTCGAGGGCCATCAAAAGATTGCGTCTTCCTCAAATTCCAGTGAAGACCTTCGTGTATGCTGCGTAAAAAGTCACTGGTGGAATCAGCTTGACATGCAGTTGGTACAGGCCAAGTAGCCATTGCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326551" ref_strand="+" ref_description="SGN-E326551 [cTOC-17-J11]">
      <seq>ctcgtgccgcttttgtcggcttttacaccactcagtcttctacacagagtgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatgggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35859" stop="39095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36152" g_stop="36351" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="371" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="564" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38795" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="659" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E326551" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36152" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTG-AAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACAT-GGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAAT</genome_strand>
        <mrna_strand>CTCGTGCCGCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328443" ref_strand="+" ref_description="SGN-E328443 [cTOC-21-D22]">
      <seq>tcttttgtcggcttttacaccactcagtcttctacacagagtgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaccaacgcttaaatacagtgctgctgctatcttacaactggctaatgggtctgaaacatacccaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35860" stop="39320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36160" g_stop="36351" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="363" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="555" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="717" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="0.84"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38998" g_stop="39020" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="740" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E328443" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36160" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTG-AAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCT</genome_strand>
        <mrna_strand>TCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGC-ACCAACGCTTAAATACAGTGCTGCTGCTATCTTACAACTGGCTAATG......................................................................................................................................GGTCTGAAACATACCCAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337348" ref_strand="+" ref_description="SGN-E337348 [cTOE-18-I10]">
      <seq>tcagtcttctacacagagtgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35883" stop="39056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36183" g_stop="36351" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="340" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="532" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38756" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="588" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E337348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36183" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAA-AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</genome_strand>
        <mrna_strand>TCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559861" ref_strand="+" ref_description="SGN-E559861 [19425]">
      <seq>tacacagagtctgctgtaaggtgaaaatagatagagagctcacaaaaatggcgacgaaaacagtgtgtgtaactggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagccaaggagagactccacttgttcaaagcaaacctgctggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacagacggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35916" stop="37832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36190" g_stop="36351" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="329" r_length="170" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E559861" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36190" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACACAGAGTGCTGTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG</genome_strand>
        <mrna_strand>TACACAGAGTCTGCTGTAAGGTG-AAAATAG--ATAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCCAAGGAGAGACTCCACTTGTTCAAAGCAAACCTGCTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468351" ref_strand="+" ref_description="SGN-E468351 [cSTB-3-K18]">
      <seq>cacagagtgtgttgttaggtggaaattgatagagagagctcacaaaaatggcgacgaaaacagtgtgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaagagagactccgcttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35915" stop="38428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36192" g_stop="36351" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="329" r_length="170" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38128" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="368" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E468351" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36192" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAGTGCTGTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAAT</genome_strand>
        <mrna_strand>CACAGAGTGTGTTGTTAGGTG-GAAATTGATAGAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAAGAGAGACTCCGCTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477077" ref_strand="+" ref_description="SGN-E477077 [cSTB-47-K23]">
      <seq>cacagagtgtgttgttaggtggaaattgatagagagagctcagaaaaatggcgacgaaaacagtgtgtgtaactggaggttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaggagagactgcgcttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacaggcggagatgattgatcctgctctgaaggggacacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35915" stop="38427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36192" g_stop="36351" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="329" r_length="170" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38127" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="367" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E477077" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36192" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAGTGCTGTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAA</genome_strand>
        <mrna_strand>CACAGAGTGTGTTGTTAGGTG-GAAATTGATAGAGAGAGCTCAGAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGGTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAGGAGAGACTGCGCTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGATTGATCCTGCTCTGAAGGGGACACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472780" ref_strand="+" ref_description="SGN-E472780 [cSTB-29-L12]">
      <seq>gtgtgttgttaggtggaaattgatagagagagctcacaaaaatggcgacgaaaacagtgtgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaggagagactccgcttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttaggagagtggttttgacatcatctgttgctgcagttgctttcaatggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35915" stop="38512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36198" g_stop="36351" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="323" r_length="170" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38212" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="446" r_length="123" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E472780" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36198" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCTGTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAG</genome_strand>
        <mrna_strand>GTGTGTTGTTAGGTG-GAAATTGATAGAGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAGGAGAGACTCCGCTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292398" ref_strand="+" ref_description="SGN-E292398 [cLET-1-J3]">
      <seq>tgctgttaggtgaaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattanctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35901" stop="39105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36201" g_stop="36351" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="323" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="515" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38805" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="620" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E292398" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36201" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTAGGTGAAAAA--AAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGC</genome_strand>
        <mrna_strand>TGCTGTTAGGTGAAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTANCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298956" ref_strand="+" ref_description="SGN-E298956 [cLET-42-G6]">
      <seq>tgctgttaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctactttttaccttggagtcaaggatccacaggtggagatgattgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35901" stop="38406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36201" g_stop="36351" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="322" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38106" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="339" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E298956" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36201" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTAGGTGAAAAA-AAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCC</genome_strand>
        <mrna_strand>TGCTGTTAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTACTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585405" ref_strand="+" ref_description="SGN-E585405 [67864]">
      <seq>gctgttaggtgaaaatagatagagagagctcaaaaaaatggcgacgaaaacagtgtgtgtaacaggagcttcaggctacatagcttcatggctagtcaaattcttgcttcagcgtggttatactgtcaaagccactgttcgcgatcccaatgataaaaaaaagacagatcacttgacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtggttttgacatcatctattgctgcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacctggtggtcagatcctgacttttgcagagaatcacagaactggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttaccataaaccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35902" stop="39092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36202" g_stop="36351" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="319" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="511" r_length="192" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38792" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="603" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E585405" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36202" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGC</genome_strand>
        <mrna_strand>GCTGTTAGGTG-AAAATAGATAGAGAGAGCTCAAAAAAATGGCGACGAAAACAGTGTGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTCTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGACAGATCACTTGACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGTTTTGACATCATCTATTGCTGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACCTGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACCATAAACCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440113" ref_strand="+" ref_description="SGN-E440113 [cSTA-15-G5]">
      <seq>gttttgtgaaaatagatagagagctcacaaaaatggcgacgaaaacagtgtgtgtaactggaggttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccaccgttcgcgatcccaatgataaaaaaaaggtagatcacttaacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacagacggagatgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtggttttgacatcatctattgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35916" stop="38537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36205" g_stop="36351" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="314" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38237" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="462" r_length="148" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E440113" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36205" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTG</genome_strand>
        <mrna_strand>GTTTTGTGAA-AATAGATAGA--GAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGGTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACCGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGGTAGATCACTTAACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGTTTTGACATCATCTATTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745501" ref_strand="+" ref_description="SGN-E745501 [GI|47105287]">
      <seq>gaggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35908" stop="39924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36207" g_stop="36351" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="316" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="508" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="671" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="858" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39351" g_stop="39623" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1131" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1132" polyA_stop="1147"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E745501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1130</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36207" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGA-AAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAAC</genome_strand>
        <mrna_strand>GAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249645" ref_strand="+" ref_description="SGN-E249645 [cLEF-56-D3]">
      <seq>taggtgaaaaaaaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35907" stop="37791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36207" g_stop="36351" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37491" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="275" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E249645" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36207" e_stop="36351"/>
          <exon e_start="37363" e_stop="37491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTG-AAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTC</genome_strand>
        <mrna_strand>TAGGTGAAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404069" ref_strand="+" ref_description="SGN-E404069 [PPC-12-H7]">
      <seq>gtgaaaatagatagagacctcacaaaaatggcgacgaaaacagtgtgtgtaactggatcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccactgttcgcgatccaaatgataaaaaaaaggtagatcacttaacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttgaagtcaaggatccagagacggagatgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtgggtttgacatcatctgttgcgtcagttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35916" stop="38501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36213" g_stop="36351" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="309" r_length="170" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38201" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="421" r_length="112" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E404069" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36213" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTT</genome_strand>
        <mrna_strand>GTGAAAATAGATAGAGACCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGATCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACTGTTCGCGATCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGGTAGATCACTTAACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGAAGTCAAGGATCCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGGTTTGACATCATCTGTTGCGTCAGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729745" ref_strand="+" ref_description="SGN-E729745 [LA21DH07]">
      <seq>aaagaaagagagagctcacaaaaatggcgatgaaaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgccagctttaccctacactgaaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggctaaccgtacaaagagccaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35917" stop="39713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36217" g_stop="36351" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="305" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="497" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="660" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="848" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39351" g_stop="39413" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="912" r_length="64" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E729745" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36217" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTG-AAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAA-CGTAGAAAGAGCCAAAAAATT</genome_strand>
        <mrna_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAAAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCCAGCTTTACCCTACACTGAAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGCTAACCGTACAAAGAGCCAAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366110" ref_strand="+" ref_description="SGN-E366110 [cLPT-15-G24]">
      <seq>aaagatagatagagctcacaaaaatggcgatgaaaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctacttgaagaaggttcatttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35917" stop="38557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36217" g_stop="36351" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="305" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38257" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="473" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E366110" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36217" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGAT</genome_strand>
        <mrna_strand>AAAGATAGATAGAGCTCACAAAAATGGCGATGAAAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTTGAAGAAGGTTCATTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338104" ref_strand="+" ref_description="SGN-E338104 [cTOE-13-K7]">
      <seq>aaagaaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35917" stop="38509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36217" g_stop="36351" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="305" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38209" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="425" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E338104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36217" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGC</genome_strand>
        <mrna_strand>AAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289508" ref_strand="+" ref_description="SGN-E289508 [cLET-3-K11]">
      <seq>aaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35921" stop="39070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36221" g_stop="36351" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="301" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="493" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38770" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="563" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E289508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36221" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCG</genome_strand>
        <mrna_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329573" ref_strand="+" ref_description="SGN-E329573 [cTOD-11-N17]">
      <seq>aaagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35921" stop="39016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36221" g_stop="36351" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="301" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="493" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38716" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="509" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E329573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36221" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTT</genome_strand>
        <mrna_strand>AAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279451" ref_strand="+" ref_description="SGN-E279451 [cLER-11-J14]">
      <seq>aagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatgaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35922" stop="39073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36222" g_stop="36351" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="300" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="492" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38773" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="565" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E279451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36222" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATA</genome_strand>
        <mrna_strand>AAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305523" ref_strand="+" ref_description="SGN-E305523 [cLEX-15-P22]">
      <seq>gagagagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacaacatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcacttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35923" stop="38545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36222" g_stop="36351" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="300" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38245" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="456" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E305523" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36222" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACA</genome_strand>
        <mrna_strand>GAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAACATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCACTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470211" ref_strand="+" ref_description="SGN-E470211 [cSTB-17-G16]">
      <seq>agagagctcacaaaaatggcgacgaaaacagtgtgtgtaactggaggttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgtcaaagccaccgttcgcgatcccaatgataaaaaaaaggtagatcacttaacatcccttgatggagctaaggagagactccacttgttcaaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccttggagtcaaggatccacagacggagatgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttagaagagtggttttgacatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35925" stop="38485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36225" g_stop="36351" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="297" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38186" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="394" r_length="97" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E470211" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36225" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTG</genome_strand>
        <mrna_strand>AGAGAGCTCACAAAAATGGCGACGAAAACAGTGTGTGTAACTGGAGGTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTCAAAGCCACCGTTCGCGATCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATAAAAAAAAGGTAGATCACTTAACATCCCTTGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGAAGAGTGGTTTTGACATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323916" ref_strand="+" ref_description="SGN-E323916 [cTOC-3-M15]">
      <seq>gagagctcacaaaaatggcgatgagaacagtatgtgtaacaggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35926" stop="37762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36226" g_stop="36351" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37462" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="226" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E323916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36226" e_stop="36351"/>
          <exon e_start="37363" e_stop="37462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGC</genome_strand>
        <mrna_strand>GAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288582" ref_strand="+" ref_description="SGN-E288582 [cLES-8-N9]">
      <seq>ggagcttcaggctacatagcttcatggctagtcaaatttttgcttcagcgtggttatactgttaaagctactgttcgcgatctcaatgatcaaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="35967" stop="38591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36267" g_stop="36351" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="255" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="447" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E288582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36267" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG</genome_strand>
        <mrna_strand>GGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346643" ref_strand="+" ref_description="SGN-E346643 [cTOF-28-C1]">
      <seq>tttttgcttcagcgtggttatactgttaaagccactgttcgcgatctcaaatgatcaaaaaaggtagatcacttgacatccctggatggagctaaggagagactccacttgttcaaagcggacctactggaaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcgggnttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatgggtctgaaacatacccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="36003" stop="39317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36303" g_stop="36351" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011">
            <donor d_prob="0.862" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37363" g_stop="37532" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="220" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="412" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="576" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38998" g_stop="39017" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="596" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E346643" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36303" e_stop="36351"/>
          <exon e_start="37363" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCAGTTTGTACTCTTTATCTTCATTTTCCCTTGAATAGAATCGTGAAAAAAATGGATTTCTGAAGTTATGTGATTATTTGTGTTTTTTTCATAGTATATGGACATTTGAATGATTTGTTGTTCGATTTCTGTAATTTTAGTTTTTTAGATTAGCTAGGGCTAATTTTTTTTTTTTGAGAATGACTGGTTTGATAATTTTATGATTGTTTGATTATTGGATGTTAATTACATACATATGGAGGGAGATGGTAGGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGATCGTAGCTTGTAGATGTAGATAGGTTATTTCAGAAATAATGTAGTAAATTTACATAGTGTTGAGTTAGATTAAGATGATTATGCCTTAAATGTGTAGATAAAGCGGAAGTGATTGTGATCCTTTTGATTTTCGTTGCTTACACATATTTGAATGATTTGGTGTTCATTTTGTGTAGTTTTAGTCAGTTGCTCGGACTCTTCAATGATGTCAAGGGGTGCGTGTCGGATTCGCTGAAAGTAGTGATTTTTGGAGAATTCGAGACGGGTGCGGCATTGAAAGTGAAGAGTCTGTGCAACTTAGGTTTTAGTTTATTTTAATTTGAAGGGTACTAGAAATTTGAGAACACTGCAATTGTTGATATTTATGCTTTGCTTTCGCTTTCTGTCTTTTTTACTGTTGGAATAGTTTTCTGAGAATGACTGGTTTAATAATATTATAGTATTTGTTAATTGTTGGATGGTAAGAACAACAATACCATACTCGGTGTAATAACACAATGTAGGGGTCCGGGCACAATGTACATAGACCTTACTGTAGCTTGTAGAAGTAGAGAGGCTTGACTTAAAATCTGATGTAATAATTCTTTTAGTATTGAGTTAGCCTAAGATTGTTTGATTATGCCTTAAATATGTAGATAATGTTTGTAAGCTAGTTTGACCCTACTTTGTGCTTTTATATTGTGTTCTTTAATGTAATATTTTTTTTTTATTTGAATCCACCTGCAGA-TGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGG-AAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGC-GGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAAT</genome_strand>
        <mrna_strand>TTTTTGCTTCAGCGTGGTTATACTGTTAAAGCCACTGTTCGCGATCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATC-AAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGGNTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GGTCTGAAACATACCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297788" ref_strand="+" ref_description="SGN-E297788 [cLET-38-O18]">
      <seq>tggatggagctaaggagagactccacttgttcaaagcggacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcccccttgcacatattctggcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37096" stop="39375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37396" g_stop="37532" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="492" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38998" g_stop="39075" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="570" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E297788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37396" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTG</genome_strand>
        <mrna_strand>TGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCCCCCTTGCACATATTCTGGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466900" ref_strand="+" ref_description="SGN-E466900 [cPRO-26-M22]">
      <seq>ttcgcttgttcaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttaggagagtggttttgacatcatctgttgctgcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcagtttgttgcaaccaacacttaatacaagtgctgctgccatcttacaattgctaaatggttctgaaacatacccaaattctacacttggttgggttaatgtgaaagatgttgccctcgcgcatattctggcttttgaaaacccttcagctaatggtagatatttgatggtggagtcagttgcacactactctgagatagtaaagatattgcgcgagctttaccctacaatgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgttgaaagatccaaaaaattgggtattgaattcattcccttggctgaaagcctcaaggaaactgctgaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37117" stop="39767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37417" g_stop="37532" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="307" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="470" r_length="163" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="657" r_length="187" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39351" g_stop="39467" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="774" r_length="117" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E466900" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37417" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTT</genome_strand>
        <mrna_strand>TTCGCTTGTTC-AAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCAGTTTGTTGCAACCAACACTTAATACAAGTGCTGCTGCCATCTTACAATTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACACTTGGTTGGGTTAATGTGAAAGATGTTGCCCTCGCGCATATTCTGGCTTTTGAAAACCCTTCAGCTAATGGTAGATATTTGATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTAAAGATATTGCGCGAGCTTTACCCTACAATGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTTGAAAGATCCAAAAAATTGGGTATTGAATTCATTCCCTTGGCTGAAAGCCTCAAGGAAACTGCTGAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465240" ref_strand="+" ref_description="SGN-E465240 [cPRO-20-D3]">
      <seq>tccgcttgttcaagcaaacctactggaagaaggttcctttgatgctgttgttgaggggtgtgaaggtgtatttcatacagcatctcctttttaccatggagtcaaggatccacaggcggagttgattgatcctgcactgaaggggacacttaatgttcttgaatcagttgcgaagacaccatctgttaggagagtggttttgacatcatctgttgctgcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37117" stop="39056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37417" g_stop="37532" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="307" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38701" g_stop="38756" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="363" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E465240" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37417" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</genome_strand>
        <mrna_strand>TCCGCTTGTTC-AAGCAAACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGTGTATTTCATACAGCATCTCCTTTTTACCATGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGTTGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGAATCAGTTGCGAAGACACCATCTGTTAGGAGAGTGGTTTTGACATCATCTGTTGCTGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345295" ref_strand="+" ref_description="SGN-E345295 [cTOF-13-F6]">
      <seq>tgaaggcgtgtttcatacagcatctcctttttaccttggagtcaaggatccacaggtggagatgattgatcctgcactgaaggggacacttaatgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37178" stop="39674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37478" g_stop="37532" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38090" g_stop="38281" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="247" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="410" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="597" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39351" g_stop="39374" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="621" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E345295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37478" e_stop="37532"/>
          <exon e_start="38090" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAGGTTCCTCACTCAATTTTCTTGATTAATATGGTTTTGACCTGTATTGCTGAGAATCTATTAAAGTTTCCCCTGGTGCATGTTGGATACGTCAAAACTAGTGTGTTTTGGAGGATCTGAAATGGTTGTGACAACATTTTTGTATAGTCTAAGCAACATAGGTGTTGACGTCTACCTTTGCTAGCTTACTCTTTTGGAATTCATAGTTAGTCTTGTTATAGCTTTCCTTTGTTATTCACTAATTTTTGTTCTTTCTGCTATTACCAAAGTTATTTTTCAAATTGTTATGGTACTTCTCTGTCGCGGGCAAAGTGCTCAACACGTTTGAGCCTTGTTTCAGGGCCTATGTTTGCCTGTGACAACACTGAGCTATAGTACTGTATTTTAAGATACTGTCTTGAAGGCTTACTGTTGTTCACCTTTATTAGGTAAACGTAAGAAAATCTTACCTACCAAAACTGGTGGTTGTCATCTTGGAACCGTTCGTCCTATTTCTCTGTTCTAGTCTTTGGTTCTTCCATATGTTGATGTAATGGATTAGACCTATTGTTAACGTGCAGGTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTAC</genome_strand>
        <mrna_strand>TGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342141" ref_strand="+" ref_description="SGN-E342141 [cTOF-10-K14]">
      <seq>atgttcttggatcagttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagaaaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgtttttgtgatccgcaactttaatgggtgtcggttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37827" stop="39918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38127" g_stop="38281" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="318" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="505" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39351" g_stop="39618" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="776" r_length="271" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E342141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38127" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCG-TTTTGTGATCCGCAACTTTAAT-GGTGTC-GTTAAGTT</genome_strand>
        <mrna_strand>ATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAAAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTTGTGATCCGCAACTTTAATGGGTGTCGGTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238257" ref_strand="+" ref_description="SGN-E238257 [cLED-22-D24]">
      <seq>gaattcggcacgaggttgcaaagacaccatctgttagaagagtggtcttgacatcatctgttgcagcagttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaggagaaagctttcgatatggttacaataaacccagcagtggttataggcggattgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgctgcccttgcacatatcctggcatttgaaaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37833" stop="39383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38127" g_stop="38281" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="318" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38998" g_stop="39083" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="404" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E238257" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38127" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCT</genome_strand>
        <mrna_strand>GAATTCGGCACGAGGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAGTGGTTATAGGCGGATTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGCTGCCCTTGCACATATCCTGGCATTTGAAAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552004" ref_strand="+" ref_description="SGN-E552004 [cTSB-2-I21]">
      <seq>agttgctttcaatggcaagccaagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttacaagtgtttgtgcatttggttttggcttggtgtttatgttatgtgcaagatctgtaccaggatggttctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37894" stop="40054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38194" g_stop="38281" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="251" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="438" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39351" g_stop="39763" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="851" r_length="413" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E552004" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38194" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCT</genome_strand>
        <mrna_strand>AGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGGTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266462" ref_strand="+" ref_description="SGN-E266462 [cLEI-3-N6]">
      <seq>aagaacccctgaagtggtggttgatgaaacatggtggtcagatcctgacttttgcagagaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="37915" stop="39770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38215" g_stop="38281" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="230" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="417" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39351" g_stop="39470" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="537" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E266462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38215" e_stop="38281"/>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAGGTGCTGTTCTTAACTTTTTGTTTTCCATATGCAGCTCCGTTGTTTCATAATCCGTTGAGCAATATAAAATATAACTAGTTGACAATTACTGCTAATCTGTTTATTCCTTTTTCTTTGGATTGGATCTACGTAAATTTGAACACAGTTGAATTCAGTTCTAGTATCACCTGAATATTCCATTTCCTTTTAACAATTGAACCATTTATATATTTGATCAAAGACGTTACGTTAAGTGTTCCATTTACATCTTACACATTCTTGTCGAAACATTTAAATCAGAAATGCTCATTATAATCATCTTAACTGGTGCTCAATCATTTCTGTTTGTATCTTTATACACTAATCTTCTTTTGGGGGAGATCCTGGTGATAGCTCTTTTTGGAGCTAATTATGGACTTATCTGTTGTTGCTTTTACCAGCTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAA</genome_strand>
        <mrna_strand>AAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356180" ref_strand="+" ref_description="SGN-E356180 [cTOS-20-K12]">
      <seq>agaatcacagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="38394" stop="39985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="173" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="360" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39351" g_stop="39696" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="706" r_length="346" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E356180" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCA</genome_strand>
        <mrna_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352238" ref_strand="+" ref_description="SGN-E352238 [cTOS-13-P1]">
      <seq>agaatccagctctggtatgtgctttcgaagacattagctgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaactttccgtggatgtagttgaatcaaagatacgatcgatgtgatcttngtgtttggaggttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="38397" stop="39985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38701" g_stop="38863" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="172" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="359" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39351" g_stop="39689" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="699" r_length="340" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E352238" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38701" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTT-GTGTTTGGAGGTTACAAGTGT</genome_strand>
        <mrna_strand>CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACTTTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTNGTGTTTGGAGGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350135" ref_strand="+" ref_description="SGN-E350135 [cTOS-4-A19]">
      <seq>tgaggatgctgcgtggaagtttgtgaaagagaaagctttcgatatggttacaataaacccagcaatggttataggcggtttgttgcaaccaacgcttaatacaagtgctgctgctatcttacaactgctaaatggttctgaaacatacccaaattctacatttggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttacaagtgtttgtgcatttggttttggcttgttgtttatgttatgtgcaagatctgtacccaggatggtctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="38430" stop="40054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38730" g_stop="38863" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38998" g_stop="39184" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="321" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39351" g_stop="39764" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="735" r_length="414" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E350135" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38730" e_stop="38863"/>
          <exon e_start="38998" e_stop="39184"/>
          <exon e_start="39351" e_stop="39764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATGGTATGCTTTATCTTAAAGCAGCTGATTTGTCTTTGATCTCATCATCTGAACTTAGTTGTTTTATTTTTGGTCCTGTTCATGTTACGACAATATGTTTGAATTCATTGGTAAAGTTTAATTTTGCTCTGCTGCAGGTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTA-CCAGGATGGTTCTGTATGTTTTTCTT</genome_strand>
        <mrna_strand>TGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG......................................................................................................................................GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCCAGGATGG-TCTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236270" ref_strand="-" ref_description="SGN-E236270 [cLED-20-G23]">
      <seq>tggttgggttaacgtgaaagatgtcgcccttgcacatattctggcatttgaaaacccttcagctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaacacctttcgtcctatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatgcggtcgatgtgatcttgtgtttggaggttccaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="38726" stop="39985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39026" g_stop="39184" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39351" g_stop="39685" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="494" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="514"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E236270" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39026" e_stop="39184"/>
          <exon e_start="39351" e_stop="39685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAA</genome_strand>
        <mrna_strand>TGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAACACCTTTCGTCCTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATGCGGTCGATGTGATCTTGTGTTTGGAGGTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215606" ref_strand="+" ref_description="SGN-E215606 [cLEL-15-G19](-)">
      <seq>ctaatggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcaagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="38788" stop="39985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39088" g_stop="39184" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39351" g_stop="39685" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="432" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="447"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E215606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39088" e_stop="39184"/>
          <exon e_start="39351" e_stop="39685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAA</genome_strand>
        <mrna_strand>CTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCAAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243476" ref_strand="-" ref_description="SGN-E243476 [cLED-34-H11]">
      <seq>ggtagatatttaatggtggagtcagttgcacactactctgagatagttaagatattacgcgagctttaccctacactgaagcttccagaaaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcgatgtgatcttgtgtttggaggttacaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="38793" stop="39985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39093" g_stop="39184" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39351" g_stop="39685" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="427" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="448"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E243476" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243476" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39093" e_stop="39184"/>
          <exon e_start="39351" e_stop="39685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAA</genome_strand>
        <mrna_strand>GGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219351" ref_strand="+" ref_description="SGN-E219351 [cLEL-11-B23](-)">
      <seq>aaagtgtgctgatgataagccatttacgccaacgtaccaggttaacgtagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagagaagaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatccatgtgatcttgtgtttggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="39049" stop="39977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39182" g_stop="39184" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39351" g_stop="39674" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="327" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="355"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E219351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39182" e_stop="39184"/>
          <exon e_start="39351" e_stop="39674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAGTTTCTTCTACGTGTAATATCTTCGATAAGATTTTTCTTTGTGAAATGTGCTTCTTTGTTTTTGACGTGCCGTGTTTCTCAAAGTGCATAAAGCTAGAGCGACTAGTAGAGGTTTACTTTAAATTCTTTTCTTGGCTCAAAGTTTTCGGTTGAACTCTCCAGGTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTT</genome_strand>
        <mrna_strand>AAA......................................................................................................................................................................GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCCATGTGATCTTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219107" ref_strand="+" ref_description="SGN-E219107 [cLEL-11-B24](-)">
      <seq>tagaaagagccaaaaaattgggtattgaattcattcctttggcggaaagcgtcaaggaaacagctgaaagcttgaaagaaaaaaagttttactgaaatgcttagccttattgtgaatgaatctggaaattgtagagaacatgcttatgtacaccttcatgttttactaaaacctttcgtattatgtcgttttgtgatccgcaactttaatggtgtcgttaagtttaaacattccgtggatgtagttgaatcaaagatacgatcaatgtgatcttgtgtttggaaaaaccaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="39095" stop="39977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39395" g_stop="39674" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="308"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E219107" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39395" e_stop="39674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTT</genome_strand>
        <mrna_strand>TAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAAAAAAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCAATGTGATCTTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291305" ref_strand="+" ref_description="SGN-E291305 [cLET-2-M9]">
      <seq>gacagcgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatagtggttacaatgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctattagaagaaggttcatttgatgctgtagttgatggatgtgaaggtgtattccatacagcgtctcctttttactactctgttacagacccacaggctgaattacttgatcctgctgttaagggaacactcaatcttctcgggtcatgtgccaaagcaccatcagtaaaacgagttgttttaacgtcttccatagctgcagttgcttacagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcaaagacattggctgaggatgctgcgtggaagtttgtgaaggagaaaggcattgatatggttgtagtaaaccctgctatggttattggtcctctgttacagcctacacttaataccagttctgctgcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="41828" stop="46002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42133" g_stop="42231" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42232" i_stop="43371" i_length="1140">
            <donor d_prob="0.385" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43372" g_stop="43541" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="280" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43542" i_stop="44577" i_length="1036">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44578" g_stop="44769" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="472" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44770" i_stop="45554" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45555" g_stop="45702" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="620" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E291305" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42133" e_stop="42231"/>
          <exon e_start="43372" e_stop="43541"/>
          <exon e_start="44578" e_stop="44769"/>
          <exon e_start="45555" e_stop="45702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTATTTTTTGTGTACTCTTTTTATTTTAGGAAAATGAGTGTTTTTTGTGGGTTATTTGGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCT</genome_strand>
        <mrna_strand>CAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATAGTGGTTACAATGTGAAGGCTTCTGTTCGTGATCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418349" ref_strand="+" ref_description="SGN-E418349 [STM-27-G10]">
      <seq>ctgacagcgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatcgtggttatactgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctgttagaagaaggttcatttgacgctgtggttgatggatgtgaaggtgtattccatacagcgtctcctttttactactccgttacagacccacaggccgaattacttgatcctgctgttaagggaacactcaatcttcttggttcatgtgccaaagcaccatcagtaaaacgagttgttttaacatcttccatagctgcagttgcttatagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcgaagacattggctgaggatgctgcgtggaagtttgtgaaggagaaagggattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="41828" stop="45927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42133" g_stop="42231" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="112" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42232" i_stop="43371" i_length="1140">
            <donor d_prob="0.385" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43372" g_stop="43541" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="282" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43542" i_stop="44577" i_length="1036">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44578" g_stop="44769" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="474" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44770" i_stop="45554" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45555" g_stop="45627" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="547" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E418349" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42133" e_stop="42231"/>
          <exon e_start="43372" e_stop="43541"/>
          <exon e_start="44578" e_stop="44769"/>
          <exon e_start="45555" e_stop="45627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTATTTTTTGTGTACTCTTTTTATTTTAGGAAAATGAGTGTTTTTTGTGGGTTATTTGGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATA</genome_strand>
        <mrna_strand>CAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTGTTAGAAGAAGGTTCATTTGACGCTGTGGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCCGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTTGGTTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACATCTTCCATAGCTGCAGTTGCTTATAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCGAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGGATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441114" ref_strand="+" ref_description="SGN-E441114 [cSTA-29-O21]">
      <seq>ctgacagcgttaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatcgtggttatactgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccattgagaggcttcacttgatcaaagcaaacctgttagaagaaggttcatttgacgctgtggttgatggatgtgaaggtgtattccatacagcgtctcctttttactactccgttacagacccacaggccgaattacttgatcctgctgttaagggaacactcaatcttcttggttcatgtgccaaagcaccatcagtaaaacgagttgttttaacatcttccatagctgcagttgcttatagtggtcagcctcggacacctgaggttgtggttgatgagagctggtggaccagtccagactactgcaaagaaaaacagctctggtatgtcctctcgaagacattggctgaggatgctgcgtggaagtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="41834" stop="45908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42133" g_stop="42231" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="112" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42232" i_stop="43371" i_length="1140">
            <donor d_prob="0.385" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43372" g_stop="43541" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="282" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43542" i_stop="44577" i_length="1036">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44578" g_stop="44769" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="474" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44770" i_stop="45554" i_length="785">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45555" g_stop="45608" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="528" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E441114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42133" e_stop="42231"/>
          <exon e_start="43372" e_stop="43541"/>
          <exon e_start="44578" e_stop="44769"/>
          <exon e_start="45555" e_stop="45608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTATTTTTTGTGTACTCTTTTTATTTTAGGAAAATGAGTGTTTTTTGTGGGTTATTTGGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAGGTGTGCATGTATTTTCTTCTTTCTTTTTGAGCACATTCAAAGACAAATGAAGGTATTGCCCATTGAAATAGCTAGTATTGAGCTAGTCTTACCATTATTGTATGTTTTGTTATATTCGTGGTCAATGTCTCTCTTGACAAATTACAGTGTGATACTGTTGCATAAATGTGGAGCTGGGAAGGCTAGGGATCTACAGAAGTTGTAACAAAATATACGCTGTATCTAAATTTGTGATGAATTAGACGCACTTTGATTAAAATTACTTTTATCATGGTTTTGTATTGGTATGGATGTAAGAAGGACCAGACACATTTCTCTTATTTAATAATATCAACAAGAGCTCATTAACCGCGGTTCTTGACAACATGACTAGCTGATCCAATTTAAAGAATTTCTGAGTGCTTTAGTCACTGCACTATTTCTTATTAATATCATAAGTTTCTATGTTTGCAGTTATGTCAACTTAAGTTTCTGAGGTGTTCATCCAAACACTTCTCTGGTTGGTGTAGTATTAGGAATACACATTTTTCTTGGAGATGTGTGTTTTAAAGCTAGGCAGTTTCAATAACTTTTTAAGTGTAATGAATCATCTGATCTTGGTCACTTATATCATCTGTTTTATATGTGACATTGACCTGTTATGATTGAAAGCTATGATATTAGTTGCAATGTGTCCTGTTAGTGGCCTTGTTTGTTTGCATGTTTAAATAAAGCATTCACATCCCATTGTTTCTTTCCTAGATTTCAATTGTTAACGTCTCTCTATTTTCTCCTGTTCCTTTTAGCTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTG</genome_strand>
        <mrna_strand>CAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCATTGAGAGGCTTCACTTGATCAAAGCAAACCTGTTAGAAGAAGGTTCATTTGACGCTGTGGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCCGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTTGGTTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACATCTTCCATAGCTGCAGTTGCTTATAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTATGTCCTCTCGAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438917" ref_strand="+" ref_description="SGN-E438917 [cSTA-10-A10]">
      <seq>cgaaaacagtgtgtgtaacaggagcttcaggttacatagcttcatggctagtcaaattcttgctacatcgtggttacactgtgaaggcttctgttcgtgatccaaatgatcccaagaaaacgcagcacttgctttctcttggtggggccaaggagaggcttcacttgttcaaagcaaacctgttagaagaaggttcatttgacgctgtggttgatggatgtgaaggtgtattccatacagcatctcctttttactactccgttacagacccacaggccgaattacttgatcctgctgttaagggaacactcaatcttcttggttcatgtgccaaagcaccatcagtaaaacgagttgttttaacatcttccatagctgcagttgcttatagtggtcagcctcggacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="41828" stop="45012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42133" g_stop="42231" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="105" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42232" i_stop="43371" i_length="1140">
            <donor d_prob="0.385" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43372" g_stop="43541" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="275" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43542" i_stop="44577" i_length="1036">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44578" g_stop="44712" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="410" r_length="135" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E438917" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42133" e_stop="42231"/>
          <exon e_start="43372" e_stop="43541"/>
          <exon e_start="44578" e_stop="44712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAAGTTTGTATTTTTTGTGTACTCTTTTTATTTTAGGAAAATGAGTGTTTTTTGTGGGTTATTTGGGGTTTGGATTCATTTGATGGAGAAATGGGGATATGGGTTTGTTATTTTTTTATGTGGGTATTGATTCTTGGAAAAAAAAAGTGGTACAAAAAAATTGGTTTTTTGTGTGTCATGATTGGTTTTTTTGTGCGTCATGTAATTGATTTGTTGTACTTTATGATGGTGTTGGGTTGTTTGGATCTTGGAATATTAGGTTATGAAGATCATATGCTTTGATTGTTTGTTGGATTATGTTGATCGTCTTATCTAAAAGCTTAAACTATTAGGGGGTTTGTTTGGAATGTGGAATGGTGGTTGTGATTATGGTGGACTGATTTTGCTAGTTCACCATAATCACAACAGATTTTCAATTTGGTATATTAGTGATGTTGTGATTATGGTGAACTGCCTTTGCCATGTAAAGCCACCACTCATGTATTCATTTTCATAGGAAATGAGGAAATCCACCTGGTTGGGCAGAAAAGCAAAATCATCTGCTGAGAGTTCTCATTAAATTAGCCGAATCCCTGCACCCGTATCTGTACCTAGATTCATACCCCCGAATTTTTTTAATTTAGATTATGAAGGATGCGTCCTCTAGATTCATACACTCTTCTTTTTTTAGTTTTTTACTTTGAGACTTTATACTCAATAGATAATCTTTTGACGTCCAGTAAAAATACATCTTAGAGCAAACCAACTCGCAAGCAGTTCCATAGGTTACAGTTAATCAATTAACCACAACTCGCTCTTGAACCAAGTGATATGGTGCCTATGCAGATCCCTTTCTTCCATTATATTGTGTTCTTAGCTATGTCTGTCTTGAATCAAGGGAGATTTTAGATCTTTTGAGACAATCACATCATGTGATAGAGTGTACTTTTCTCTTTTTACCACACTTATCAAATAAATTCAGTGTAGTAAAGAAAAAAAATCATAAGGTTGATCTTGTTTCACTCATCACTGTGACTTAAACTTTCAGCTCTCCGCTTATTTTATAATTTGGACAACAGAAAAACTAGATATTTCATTCTTCGCCCGTGCTATAGGTCATGTTTACTGCTTATGTGTTGAATGCGTTATGATATTTTCGTGCAGATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAGGTTCTTTCCGTTCTTGTAAATCTGATTTTACTTACCTTCATTCTAGGTAGTGTAATGGCAGTTTCTATGTATTGATAAAAGTATTGCGGTCAGCATCTTTATTAGCTTAATATCAAGTAACTTTAGTTATCAATGACAAGTATTCAGATCAGATGACACAAGTGACAAATGAACCATCTGGTACATTAAAGGAGCTAGATGCTATGCTGATGAACCATAACATGAGTCCTGTTTCTTTGAATCAGATACTATACAATTTCCATTTACTCTGCTCCTGGTTATTTTACCATTTGCCTGGCCCGATTTGTATATCTTTCTCTTTCTTTTTGAAGTTTCATTATTCTTTCAAGTTCCTTTTGTATGCTTGGCTGTTTGGTAAATAAATCTAAGACTGTGTAATACGATTGAAAGATGTAACAGTTTAGTTTCAAGATATCCTTTCATCATTGTTACTTCTCCCCTCTTGTAAATTAAGTTAGTTACATCCTACTAGAGTGAAATTCTCAAATTAATATATTAAGTACCTAACTGAAATAGTGTGAGAAAATTTTGAATTATGTCTGTAAGATAATACTCCTTGACAGTTCACTCTCTGCTTTGGCTCAACTCTTGTTTAATGATTATAAAACTATACGGTTATGGTTGGTCGAGGAAAGTTTACAGTGAGCAGGGTTCACCTCCTTAAAGGACAAGTTGCGACAGTGGCTTGAACATCATGAGAGGATAATTAAATTATAGCATACAGCTATTGGAATTACTATTTTCTCATTTCAATGTACTTGATGTGTTATTATGAAGCTTAAGAATTTTGTAATCTTATTTTGGAGTTTGTTTTATGGACTTTAACTAGTTGATATAGTTCAAATTTGGTAGTCACATGAGATTATTCACGTTCTCTAGAAAATGAAATGTGTGGTAGCCATGTTAAAAACCAACATCCGACTTGTTTTCAATGGTACTTAAAGTAAGTTAGCTTGTTTGTCCTTCTAGAGTTGGCTCCCATTTCAAATCAACTCTACATCTCCCCATATTTCAGGCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCT</genome_strand>
        <mrna_strand>CAGTGTGTGTAACAGGAGCTTCAGGTTACATAGCTTCATGGCTAGTCAAATTCTTGCTACATCGTGGTTACACTGTGAAGGCTTCTGTTCGTGATCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTGTTAGAAGAAGGTTCATTTGACGCTGTGGTTGATGGATGTGAAGGTGTATTCCATACAGCATCTCCTTTTTACTACTCCGTTACAGACCCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTTGGTTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACATCTTCCATAGCTGCAGTTGCTTATAGTGGTCAGCCTCGGACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217513" ref_strand="+" ref_description="SGN-E217513 [cLEL-21-I23](-)">
      <seq>gtttactacccttgaagaaagcatcaaagaaactgttgaaagtttgaaggaaaagaagttttttggaggttcatcttctatgtaaaaggcttctcaaagcttttatggttttgttgaacaattactacccaccccaccctaccctacacactttttttttttacttcttttagctaattatagaatcgagaagtcgaatggtatatccgttaataaatttcgatcagatgaggttgaaatttgttctatatctagagatttttacagactggtttgatagaagaaattagaacactattgttgtgttttgttgagtttggtttgtaggagaaaaccaaatggatttattgatatttgaagatttgtgttgaatccaaaattttcaggctcaatatctaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="47308" stop="48311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47608" g_stop="48011" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="418"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E217513" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47608" e_stop="48011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTACCCTTGAAGAAAGCATCAAAGAAACTGTTGAAAGTTTGAAGGAAAAGAAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAA-TACTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAATA</genome_strand>
        <mrna_strand>GTTTACTACCCTTGAAGAAAGCATCAAAGAAACTGTTGAAAGTTTGAAGGAAAAGAAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATTACTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217233" ref_strand="+" ref_description="SGN-E217233 [cLEL-21-I23](-)">
      <seq>aagttttttggaggttaatcttctatgtaaaaggcttctcaaagcttttatggttttgttgaacaatacctacccaccccaccctaccctacacactttttttttttacttcttttagctaattatagaatcgagaagtcgaatggtatatccgttaataaatttcgatcagatgaggttgaaatttgttctatatctagagatttttacagactggtttgatagaagaaattagaacactattgttgtgttttgttgagtttggtttgtaggagaaaaccaaatggatttattgatatttgaagatttgtgttgaatccaccactttcaggctcaatatctaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="47363" stop="48311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47663" g_stop="48011" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="363"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E217233" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47663" e_stop="48011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATA-CTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAATA</genome_strand>
        <mrna_strand>AAGTTTTTTGGAGGTTAATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATACCTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCACCACTTTCAGGCTCAATATCTAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359035" ref_strand="+" ref_description="SGN-E359035 [cLHT-11-I23]">
      <seq>agggtatagcattgtggcaagagtcattctatttccatgcatagttgtatttctaatgattgagttacgaagaaggcatttgtcgatttatgatgcaattgaaagtttcctgctcggtgagaacaatttcacgcccattagatattccaactccaacataagaaagatgactagaaactttaaagagaaactaggccagggaggttatggttcagtatataaaggcaagcttcaaagtggtcctaatgtagcagtgaagatcttgagcaagcccaaagccgatggacaagactttatcaacgaggttgctacaatcgggaggattcatcatgttaacatagtgcaacttattggctattgtgctgagagatgtaagcgtgctctcgtatatgacttcatgcctaaaggatcacttgaaaagtacatcacacctcgaggaggagctgaattattaagttggaaaagaaagtttgaaattgctcttggagttgctcgaggtattgaatacttgcatcgaggttgtgacattcagattctacattttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="70293" stop="71444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70593" g_stop="71144" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E359035" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70593" e_stop="71144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATAGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCACGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAAGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTCATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTACAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTCGAGAAGGAGGAGCTGAACTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</genome_strand>
        <mrna_strand>AGGGTATAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATTGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCTCGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAGGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTTATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTGCAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTC--G-AGGAGGAGCTGAATTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415768" ref_strand="-" ref_description="SGN-E415768 [STM-21-L14]">
      <seq>aatttcattccaaaactatctgattttggtcttgcaaaatcatacccgacggataagagcattgttactctaacagcagccaggggaacaattggttatgtagctccagagttgatcaacagaagcattggtccaatatcttataaggcagatgtctatagctttggaatgttactcattgatatcgtaggcttgaaaacaaactcggcagccagagaggatatgtcaagccagtatttcccacattggatttatgatcagctcgacaagggaaaggagattgaagtactagacgagacacatgatgacgtaaagaagctgactttagttgctttgtggtgcatacaaatgaatccactcgatcgtccctcaatgactaaagtagtggaaatgcttgaaggcgaattacaagcattgcaaatgcctcccaggccctctgaatcgcgggaaccatgttcattggaattcaatctaattagttcttcaataagctcaactgagtctgtgaagttgcttgagagttgttctgattctgcaaaaatagatgtaattgttgcttgacatcacatattatgtacgtaattcgtgttgttctgaataaaatatcaagttcatgctaaattttaagatgttgttcaaaaaaaaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="70873" stop="72076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71173" g_stop="71767" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="656"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E415768" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415768" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71173" e_stop="71767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCATTCCGAAACTATCTGATTTTGGTCTTGCAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTT</genome_strand>
        <mrna_strand>AATTTCATTCCAAAACTATCTGATTTTGGTCTTGCAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGCCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTATAAGGCAGATGTCTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGCAGCCAGAGAGGATATGTCAAGCCAGTATTTCCCACATTGGATTTATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGATGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCGTCCCTCAATGACTAAAGTAGTGGAAATGCTTGAAGGCGAATTACAAGCATTGCAAATGCCTCCCAGGCCCTCTGAATCGCGGGAACCATGTTCATTGGAATTCAATCTAATTAGTTCTTCAATAAGCTCAACTGAGTCTGTGAAGTTGCTTGAGAGTTGTTCTGATTCTGCAAAAATAGATGTAATTGTTGCTTGACATCACATATTATGTACGTAATTCGTGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412493" ref_strand="-" ref_description="SGN-E412493 [STM-16-I22]">
      <seq>caaaatcatacccgacggataagagcattgttactctaacagcagccaggggaacaattggttatgtagctccagagttgatcaacagaagcattggtccaatatcttataaggcagatgtctatagctttggaatgttactcattgatatcgtaggcttgaaaacaaactcggcagccagagaggatatgtccagccagtatttcccacattggatttatgatcaactcgacaagggaaaggagattgaagtactagacgagacacatgatgacataaagaagctgactttagttgctttgtggtgcatacaaatgaatccactcgatcgtccctcaatgactagagtagtggaaatgcttgaaggtgaattacaaacattgcaaacgcctcccaggccctctgaatcgctgcaagcacgttcattggaattcaatctaagtagttcttcaataagctcaactgagtctgtgaagttgcttgagagttgttctgattcagccaaaatagatgtaattgttgcttgacatcacatattatgtacgtaattcgtgttgttctgaataaaatatcaagttcataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="70907" stop="72076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71207" g_stop="71767" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="595"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E412493" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412493" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71207" e_stop="71767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTT</genome_strand>
        <mrna_strand>CAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGCCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTATAAGGCAGATGTCTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGCAGCCAGAGAGGATATGTCCAGCCAGTATTTCCCACATTGGATTTATGATCAACTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGATGACATAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCGTCCCTCAATGACTAGAGTAGTGGAAATGCTTGAAGGTGAATTACAAACATTGCAAACGCCTCCCAGGCCCTCTGAATCGCTGCAAGCACGTTCATTGGAATTCAATCTAAGTAGTTCTTCAATAAGCTCAACTGAGTCTGTGAAGTTGCTTGAGAGTTGTTCTGATTCAGCCAAAATAGATGTAATTGTTGCTTGACATCACATATTATGTACGTAATTCGTGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411585" ref_strand="-" ref_description="SGN-E411585 [STM-14-N12]">
      <seq>ataagagcattgtttctctaacagcagtcaggggaacaattggatatgtagctccagagttgatcaacagaagcattggtccaatatcttataaggcagatgtctatagctttggaatgttactcattgatatcgtaggcttggaaacaaactaggcagccagagaggatatgtcaagccagtatttcccacattggatttatgatcagctcgacaagggaaaggagattgaagtactagacgagacacatgaagacgtaaagaagctgactttagttgctttgtggtgcatacaaatgaatccacttgatcgtccctcaatgactaaagtagtagaaatgcttgaaggcgaattacaagcactgcaaacgcctcccaggccttttgaatcgcgggaaccatgttcattggaattcaatctaattagttcttcaacaagctcaactgagtctgtgaagttgcttgagagttgttctgattctgcaaaaatagatgtaattgttgcttgacatcacatattatgtacgtaattcgtgttgttctgaataaaatatcaagttcatgctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="70925" stop="72076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71225" g_stop="71767" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="589"/>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E411585" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411585" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71225" e_stop="71767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTT</genome_strand>
        <mrna_strand>ATAAGAGCATTGTTTCTCTAACAGCAGTCAGGGGAACAATTGGATATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTATAAGGCAGATGTCTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGGAAACAAACTAGGCAGCCAGAGAGGATATGTCAAGCCAGTATTTCCCACATTGGATTTATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTTGATCGTCCCTCAATGACTAAAGTAGTAGAAATGCTTGAAGGCGAATTACAAGCACTGCAAACGCCTCCCAGGCCTTTTGAATCGCGGGAACCATGTTCATTGGAATTCAATCTAATTAGTTCTTCAACAAGCTCAACTGAGTCTGTGAAGTTGCTTGAGAGTTGTTCTGATTCTGCAAAAATAGATGTAATTGTTGCTTGACATCACATATTATGTACGTAATTCGTGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540456" ref_strand="+" ref_description="SGN-E540456 [TUS-60-L22](-)">
      <seq>aaaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="75683" stop="76776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75983" g_stop="76476" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E540456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75983" e_stop="76476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</genome_strand>
        <mrna_strand>AAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288943" ref_strand="+" ref_description="SGN-E288943 [cLES-17-G8]">
      <seq>aaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="75684" stop="76776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75984" g_stop="76476" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E288943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75984" e_stop="76476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</genome_strand>
        <mrna_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540458" ref_strand="+" ref_description="SGN-E540458 [TUS-60-L22]">
      <seq>aaatagtcacaaaactaacaccaatggcttctttactaatgtcatcttcattactagcccatatcgaaggatctaactacaggagaaccaggaacgaagggttttcctccctctccgcgcattcaaataggagaagagtgctaaaagttaatgcatttactaaggatgaaaaaattgtgaaaaaaaaggaggaaaaaaagagcattggatcaagaagggaatgggctttagccataatggctatagtagctacaagttcatttgcaagtgttgttatggctgaggaaccaaaggcagggacacttgaggcaaagaaaaagtatgcacctatttgtgtcacaatgccaactgctagaatatgtcacaagtaaaatttagacgcggaatcgggatttaagtttaataggtcgtaacttttaagatttttaattattagtgaagttgttgtaatgttaaaattataggttcaggtctaatatagtctgtgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0095M15-mCUub/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0095M15.1" temp_strand="+" temp_description="C01HBa0095M15.1  AC238929.5 htgs_phase:1 submitted_to_sgn_as:C01HBa0095M15 upload_account_name:manual">
        <position start="75684" stop="76776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75984" g_stop="76476" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0095M15.1" gen_strand="+" ref_id="SGN-E540458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0095M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75984" e_stop="76476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</genome_strand>
        <mrna_strand>AAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>97</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4851" PGL_stop="3584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4728" e_stop="3584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="4728" e_stop="3584" e_length="1145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4728" stop="3674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4623" stop="4063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4622" stop="3908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4598" stop="4054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4547" stop="4063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4501" stop="4107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4417" stop="3616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4250" stop="3665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4153" stop="3599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4048" stop="3584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289190" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAGATAGGTATTTTAATTGAAA</gDNA_template>
            <first_frame> N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  N  Y  I  I  R  I  T  S  R  K  *  E  F  T  F  Q  K  Q  M  S  L  M  P  S  K  E  V  T  L  K  *  F  L  M  S  Q  I  K  I  L  K  P  *  P  L  L  Q  T  P  T  V  G  F  K  I  I  *  E  I  I  F  R  M  L  N  S  N  I  *  P  L  E  T  K  L  I  Q  V  E  T  V  V  N  T  H  D  L  L  V  Q  Q  W  K  I  F  T  T  R  Y  H  Q  Q  G  C  K  I  K  S  R  S  Q  P  R  H  I  *  G  F  *  P  T  P  T  H  L  E  I  A  F  F  A  M  N  I  K  V  S  S  I  P  *  L  D  F  Y  Q  D  I  I  F  H  F  *  P  I  F  T  L  I  L  A  M  L  M  I  M  F  L  F  L  M  H  F  S  S  N  K  G  *  T  M  Q  D  I  K  I  F  S  M  P  L  W  I  Q  C  I  L  L  L  R  N  L  E  D  K  I  L  R  L  L  Y  R  K  V  V  G  L  L  K  D  T  L  P  L  L  L  K  T  R  *  L  I  I  Q  T  *  L  I  M  *  K  E  G  Q  E  H  Q  R  N  Q  E  G  L  *  K  P  I  Y  S  P  C  L  M  K  I  E  R  M  E  N  Q  V  S  N  I  L  D  S  L  N  L  T  R  G  Q  S  I  N  S  N  L  I  N  D  T  I  L  *  S  I  Y  R  Y  F  M  L  C  I  *  I  I  N  K  *  *  Y  M  *  E  K  C  M  A  S  F  V  F  L  D  I  I  T  L  I  L  K  Y  F  *  *  D  R  Y  F  N  *   </first_frame>
            <second_frame>  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  I  I  *  F  E  *  H  Q  E  N  E  N  L  L  S  R  N  K  C  L  *  C  P  Q  R  K  *  H  *  N  N  S  *  C  P  K  S  R  S  *  S  P  S  H  S  F  K  R  Q  R  L  G  S  R  *  Y  K  K  S  F  S  G  C  *  I  Q  I  Y  S  R  W  K  R  S  *  S  R  *  R  Q  W  *  I  R  T  I  C  W  S  S  N  G  K  Y  L  Q  R  V  I  I  S  R  V  A  K  S  N  Q  G  L  N  R  D  I  F  R  A  F  N  Q  H  L  P  T  *  R  *  H  F  S  R  *  I  *  K  F  H  Q  S  H  N  W  I  S  I  K  T  *  S  S  T  F  S  Q  Y  L  P  L  F  W  P  C  *  *  *  C  S  S  S  L  C  T  F  Q  A  T  R  A  K  R  C  R  I  S  K  S  F  R  C  P  C  G  F  N  V  F  C  Y  *  E  T  W  R  T  K  Y  *  D  Y  C  I  G  K  W  L  A  F  *  R  T  P  F  R  Y  S  *  K  R  D  D  L  L  Y  K  L  D  *  S  C  E  R  R  G  R  N  T  K  E  T  R  K  D  Y  R  N  L  F  I  R  H  V  *  *  K  *  K  G  W  K  T  K  *  A  T  F  W  T  L  *  T  *  P  E  A  K  V  S  T  Q  I  *  L  M  I  P  Y  Y  N  Q  Y  I  D  I  L  C  Y  V  Y  E  *  S  I  N  D  S  I  C  E  K  N  V  W  P  L  L  C  S  L  I  S  *  H  *  Y  *  S  I  F  N  K  I  G  I  L  I  E  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  L  Y  N  S  N  N  I  K  K  M  R  I  Y  F  P  E  T  N  V  F  N  A  L  K  G  S  N  I  E  I  I  L  D  V  P  N  Q  D  L  E  A  L  A  T  P  S  N  A  N  G  W  V  Q  D  N  I  R  N  H  F  P  D  V  K  F  K  Y  I  A  V  G  N  E  V  D  P  G  R  D  S  G  K  Y  A  R  F  V  G  P  A  M  E  N  I  Y  N  A  L  S  S  A  G  L  Q  N  Q  I  K  V  S  T  A  T  Y  L  G  L  L  T  N  T  Y  P  P  R  D  S  I  F  R  D  E  Y  K  S  F  I  N  P  I  I  G  F  L  S  R  H  N  L  P  L  L  A  N  I  Y  P  Y  F  G  H  A  D  D  N  V  P  L  P  Y  A  L  F  K  Q  Q  G  L  N  D  A  G  Y  Q  N  L  F  D  A  L  V  D  S  M  Y  F  A  T  E  K  L  G  G  Q  N  I  E  I  I  V  S  E  S  G  W  P  S  E  G  H  P  S  A  T  L  E  N  A  M  T  Y  Y  T  N  L  I  N  H  V  K  G  G  A  G  T  P  K  K  P  G  R  T  I  E  T  Y  L  F  A  M  F  D  E  N  R  K  D  G  K  P  S  E  Q  H  F  G  L  F  K  P  D  Q  R  P  K  Y  Q  L  K  F  D  *  *  Y  H  I  I  I  N  I  *  I  F  Y  V  M  Y  M  N  N  Q  *  M  I  V  Y  V  R  K  M  Y  G  L  F  C  V  P  *  Y  H  N  I  N  I  E  V  F  L  I  R  *  V  F  *  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4726" stop="3746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALATPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFINPIIGFLSRHNLPLLANIYPYFGHADDNVPLPYALFKQQGLNDAGYQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPSATLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSEQHFGLFKPDQRPKYQLKFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4851" e_stop="4829"/>
            <exon e_start="4645" e_stop="3584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.652">
            <gDNA_exon_boundary e_start="4851" e_stop="4829" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4828" i_stop="4646" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="4645" e_stop="3584" e_length="1062"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4851" stop="4829"/>
              <exon start="4645" stop="3586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4623" stop="4063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4622" stop="3908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4598" stop="4054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4547" stop="4063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4501" stop="4107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4417" stop="3616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4250" stop="3665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4153" stop="3599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4048" stop="3584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289190" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAAAGTCACAAATAAATATA : NNNNNNNNNNNNNNNNNNNTAAAATTATATAATTCGAATAACATCAAGAAAATGAGAATTTACTTTCCAGAAACAAATGTCTTTAATGCCCTCAAAGGAAGTAACATTGAAATAATTCTTGATGTCCCAAATCAAGATCTTGAAGCCCTAGCCACTCCTTCAAACGCCAACGGTTGGGTTCAAGATAATATAAGAAATCATTTTCCGGATGTTAAATTCAAATATATAGCCGTTGGAAACGAAGTTGATCCAGGTAGAGACAGTGGTAAATACGCACGATTTGTTGGTCCAGCAATGGAAAATATTTACAACGCGTTATCATCAGCAGGGTTGCAAAATCAAATCAAGGTCTCAACCGCGACATATTTAGGGCTTTTAACCAACACCTACCCACCTAGAGATAGCATTTTTCGCGATGAATATAAAAGTTTCATCAATCCCATAATTGGATTTCTATCAAGACATAATCTTCCACTTTTAGCCAATATTTACCCTTATTTTGGCCATGCTGATGATAATGTTCCTCTTCCTTATGCACTTTTCAAGCAACAAGGGCTAAACGATGCAGGATATCAAAATCTTTTCGATGCCCTTGTGGATTCAATGTATTTTGCTACTGAGAAACTTGGAGGACAAAATATTGAGATTATTGTATCGGAAAGTGGTTGGCCTTCTGAAGGACACCCTTCCGCTACTCTTGAAAACGCGATGACTTATTATACAAACTTGATTAATCATGTGAAAGGAGGGGCAGGAACACCAAAGAAACCAGGAAGGACTATAGAAACCTATTTATTCGCCATGTTTGATGAAAATAGAAAGGATGGAAAACCAAGTGAGCAACATTTTGGACTCTTTAAACCTGACCAGAGGCCAAAGTATCAACTCAAATTTGATTAATGATACCATATTATAATCAATATATAGATATTTTATGTTATGTATATGAATAATCAATAAATGATAGTATATGTGAGAAAAATGTATGGCCTCTTTTGTGTTCCTTGATATCATAACATTAATATTGAAGTATTTTTAATAAGATAGGTATTTTAATTGAAA</gDNA_template>
            <first_frame> *  K  S  H  K  *  I  Y :   F  F  F  F  F  F  *  N  Y  I  I  R  I  T  S  R  K  *  E  F  T  F  Q  K  Q  M  S  L  M  P  S  K  E  V  T  L  K  *  F  L  M  S  Q  I  K  I  L  K  P  *  P  L  L  Q  T  P  T  V  G  F  K  I  I  *  E  I  I  F  R  M  L  N  S  N  I  *  P  L  E  T  K  L  I  Q  V  E  T  V  V  N  T  H  D  L  L  V  Q  Q  W  K  I  F  T  T  R  Y  H  Q  Q  G  C  K  I  K  S  R  S  Q  P  R  H  I  *  G  F  *  P  T  P  T  H  L  E  I  A  F  F  A  M  N  I  K  V  S  S  I  P  *  L  D  F  Y  Q  D  I  I  F  H  F  *  P  I  F  T  L  I  L  A  M  L  M  I  M  F  L  F  L  M  H  F  S  S  N  K  G  *  T  M  Q  D  I  K  I  F  S  M  P  L  W  I  Q  C  I  L  L  L  R  N  L  E  D  K  I  L  R  L  L  Y  R  K  V  V  G  L  L  K  D  T  L  P  L  L  L  K  T  R  *  L  I  I  Q  T  *  L  I  M  *  K  E  G  Q  E  H  Q  R  N  Q  E  G  L  *  K  P  I  Y  S  P  C  L  M  K  I  E  R  M  E  N  Q  V  S  N  I  L  D  S  L  N  L  T  R  G  Q  S  I  N  S  N  L  I  N  D  T  I  L  *  S  I  Y  R  Y  F  M  L  C  I  *  I  I  N  K  *  *  Y  M  *  E  K  C  M  A  S  F  V  F  L  D  I  I  T  L  I  L  K  Y  F  *  *  D  R  Y  F  N  *   </first_frame>
            <second_frame>  K  K  V  T  N  K  Y   : I  F  F  F  F  F  F  K  I  I  *  F  E  *  H  Q  E  N  E  N  L  L  S  R  N  K  C  L  *  C  P  Q  R  K  *  H  *  N  N  S  *  C  P  K  S  R  S  *  S  P  S  H  S  F  K  R  Q  R  L  G  S  R  *  Y  K  K  S  F  S  G  C  *  I  Q  I  Y  S  R  W  K  R  S  *  S  R  *  R  Q  W  *  I  R  T  I  C  W  S  S  N  G  K  Y  L  Q  R  V  I  I  S  R  V  A  K  S  N  Q  G  L  N  R  D  I  F  R  A  F  N  Q  H  L  P  T  *  R  *  H  F  S  R  *  I  *  K  F  H  Q  S  H  N  W  I  S  I  K  T  *  S  S  T  F  S  Q  Y  L  P  L  F  W  P  C  *  *  *  C  S  S  S  L  C  T  F  Q  A  T  R  A  K  R  C  R  I  S  K  S  F  R  C  P  C  G  F  N  V  F  C  Y  *  E  T  W  R  T  K  Y  *  D  Y  C  I  G  K  W  L  A  F  *  R  T  P  F  R  Y  S  *  K  R  D  D  L  L  Y  K  L  D  *  S  C  E  R  R  G  R  N  T  K  E  T  R  K  D  Y  R  N  L  F  I  R  H  V  *  *  K  *  K  G  W  K  T  K  *  A  T  F  W  T  L  *  T  *  P  E  A  K  V  S  T  Q  I  *  L  M  I  P  Y  Y  N  Q  Y  I  D  I  L  C  Y  V  Y  E  *  S  I  N  D  S  I  C  E  K  N  V  W  P  L  L  C  S  L  I  S  *  H  *  Y  *  S  I  F  N  K  I  G  I  L  I  E  </second_frame>
            <third_frame>   K  K  S  Q  I  N  I  :  F  F  F  F  F  F  L  K  L  Y  N  S  N  N  I  K  K  M  R  I  Y  F  P  E  T  N  V  F  N  A  L  K  G  S  N  I  E  I  I  L  D  V  P  N  Q  D  L  E  A  L  A  T  P  S  N  A  N  G  W  V  Q  D  N  I  R  N  H  F  P  D  V  K  F  K  Y  I  A  V  G  N  E  V  D  P  G  R  D  S  G  K  Y  A  R  F  V  G  P  A  M  E  N  I  Y  N  A  L  S  S  A  G  L  Q  N  Q  I  K  V  S  T  A  T  Y  L  G  L  L  T  N  T  Y  P  P  R  D  S  I  F  R  D  E  Y  K  S  F  I  N  P  I  I  G  F  L  S  R  H  N  L  P  L  L  A  N  I  Y  P  Y  F  G  H  A  D  D  N  V  P  L  P  Y  A  L  F  K  Q  Q  G  L  N  D  A  G  Y  Q  N  L  F  D  A  L  V  D  S  M  Y  F  A  T  E  K  L  G  G  Q  N  I  E  I  I  V  S  E  S  G  W  P  S  E  G  H  P  S  A  T  L  E  N  A  M  T  Y  Y  T  N  L  I  N  H  V  K  G  G  A  G  T  P  K  K  P  G  R  T  I  E  T  Y  L  F  A  M  F  D  E  N  R  K  D  G  K  P  S  E  Q  H  F  G  L  F  K  P  D  Q  R  P  K  Y  Q  L  K  F  D  *  *  Y  H  I  I  I  N  I  *  I  F  Y  V  M  Y  M  N  N  Q  *  M  I  V  Y  V  R  K  M  Y  G  L  F  C  V  P  *  Y  H  N  I  N  I  E  V  F  L  I  R  *  V  F  *  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4849" stop="4829"/>
                    <exon start="4645" stop="3746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSQINIFFFFFFLKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALATPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFINPIIGFLSRHNLPLLANIYPYFGHADDNVPLPYALFKQQGLNDAGYQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPSATLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSEQHFGLFKPDQRPKYQLKFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8751" PGL_stop="8095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8751" e_stop="8541"/>
            <exon e_start="8447" e_stop="8095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.923"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="8751" e_stop="8541" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="8540" i_stop="8448" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="8447" e_stop="8095" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8751" stop="8541"/>
              <exon start="8447" stop="8220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8749" stop="8541"/>
              <exon start="8447" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAAATTTCTTCATGTGTTATGTGGAATGAAGAGTAAAATCATGGATGTCCACCATGAATTAGATGCCATTCTTGAAAACATCATCAATGAGCACAAAAACAATGGTGAATTAGGAGGTGAAGGTTTAGTTTCCACATTGCTAAGACTAATGAAAGAGGGGGGCCTTCAATTTCCCATCACCAACGACAACATCAAAGCTATTATTTTT : GACATATTTGCCGCGGGGAACAGAAACTTCTTCAGCGACAATTGATTGGATCATGGTGGAAATGATGAGAAATCCAAATGTACTCTCCAAAGCTCAAGAAGAGGTAAGAAACGCGTTCAAAGGTAAAGAAACATTTGATGAAAATGATGTCGAAGAATTGAAATACCTAAAGTTGGTCGTTAAAGAAAGTTTTAGACTGCATCCTCCATTTCCCCTTTTGCTCCCAAGGGAATGTAGGGAAGAAGTAGAAATAAATGGATACACTATTCCTTTGAAAACAAAAGTTATGGTTAACGCATGGGCTATTGGAAGAGATCCTAAATATTGGGATGACGCAGAAAGCTTCAAACCTG</gDNA_template>
            <first_frame> T  K  I  S  S  C  V  M  W  N  E  E  *  N  H  G  C  P  P  *  I  R  C  H  S  *  K  H  H  Q  *  A  Q  K  Q  W  *  I  R  R  *  R  F  S  F  H  I  A  K  T  N  E  R  G  G  P  S  I  S  H  H  Q  R  Q  H  Q  S  Y  Y  F   : *  H  I  C  R  G  E  Q  K  L  L  Q  R  Q  L  I  G  S  W  W  K  *  *  E  I  Q  M  Y  S  P  K  L  K  K  R  *  E  T  R  S  K  V  K  K  H  L  M  K  M  M  S  K  N  *  N  T  *  S  W  S  L  K  K  V  L  D  C  I  L  H  F  P  F  C  S  Q  G  N  V  G  K  K  *  K  *  M  D  T  L  F  L  *  K  Q  K  L  W  L  T  H  G  L  L  E  E  I  L  N  I  G  M  T  Q  K  A  S  N  L </first_frame>
            <second_frame>  L  K  F  L  H  V  L  C  G  M  K  S  K  I  M  D  V  H  H  E  L  D  A  I  L  E  N  I  I  N  E  H  K  N  N  G  E  L  G  G  E  G  L  V  S  T  L  L  R  L  M  K  E  G  G  L  Q  F  P  I  T  N  D  N  I  K  A  I  I  F  :  D  I  F  A  A  G  N  R  N  F  F  S  D  N  *  L  D  H  G  G  N  D  E  K  S  K  C  T  L  Q  S  S  R  R  G  K  K  R  V  Q  R  *  R  N  I  *  *  K  *  C  R  R  I  E  I  P  K  V  G  R  *  R  K  F  *  T  A  S  S  I  S  P  F  A  P  K  G  M  *  G  R  S  R  N  K  W  I  H  Y  S  F  E  N  K  S  Y  G  *  R  M  G  Y  W  K  R  S  *  I  L  G  *  R  R  K  L  Q  T   </second_frame>
            <third_frame>   *  N  F  F  M  C  Y  V  E  *  R  V  K  S  W  M  S  T  M  N  *  M  P  F  L  K  T  S  S  M  S  T  K  T  M  V  N  *  E  V  K  V  *  F  P  H  C  *  D  *  *  K  R  G  A  F  N  F  P  S  P  T  T  T  S  K  L  L  F  L :   T  Y  L  P  R  G  T  E  T  S  S  A  T  I  D  W  I  M  V  E  M  M  R  N  P  N  V  L  S  K  A  Q  E  E  V  R  N  A  F  K  G  K  E  T  F  D  E  N  D  V  E  E  L  K  Y  L  K  L  V  V  K  E  S  F  R  L  H  P  P  F  P  L  L  L  P  R  E  C  R  E  E  V  E  I  N  G  Y  T  I  P  L  K  T  K  V  M  V  N  A  W  A  I  G  R  D  P  K  Y  W  D  D  A  E  S  F  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8596" stop="8541"/>
                    <exon start="8447" stop="8096"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRGAFNFPSPTTTSKLLFLTYLPRGTETSSATIDWIMVEMMRNPNVLSKAQEEVRNAFKGKETFDENDVEELKYLKLVVKESFRLHPPFPLLLPRECREEVEINGYTIPLKTKVMVNAWAIGRDPKYWDDAESFKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22141" PGL_stop="30229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22141" e_stop="22289"/>
            <exon e_start="24218" e_stop="24365"/>
            <exon e_start="24458" e_stop="24577"/>
            <exon e_start="25131" e_stop="25324"/>
            <exon e_start="25955" e_stop="26068"/>
            <exon e_start="26230" e_stop="26324"/>
            <exon e_start="27513" e_stop="27619"/>
            <exon e_start="28251" e_stop="28324"/>
            <exon e_start="28441" e_stop="28697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.060" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22141" e_stop="22289" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.060" acc_prob="0.989">
            <gDNA_intron_boundary i_start="22290" i_stop="24217" i_length="1928"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24218" e_stop="24365" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24366" i_stop="24457" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24458" e_stop="24577" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.825" acc_prob="0.965">
            <gDNA_intron_boundary i_start="24578" i_stop="25130" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25131" e_stop="25324" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25325" i_stop="25954" i_length="630"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25955" e_stop="26068" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.982">
            <gDNA_intron_boundary i_start="26069" i_stop="26229" i_length="161"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26230" e_stop="26324" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.844" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26325" i_stop="27512" i_length="1188"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27513" e_stop="27619" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.939">
            <gDNA_intron_boundary i_start="27620" i_stop="28250" i_length="631"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28251" e_stop="28324" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="28441" e_stop="28697" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22141" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25324"/>
              <exon start="25955" stop="26068"/>
              <exon start="26230" stop="26324"/>
              <exon start="27513" stop="27556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22153" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25324"/>
              <exon start="25955" stop="25977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22157" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22157" stop="22289"/>
              <exon start="24218" stop="24353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22164" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22167" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25324"/>
              <exon start="25955" stop="25984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22172" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25324"/>
              <exon start="25955" stop="26025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22207" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22207" stop="22289"/>
              <exon start="24218" stop="24365"/>
              <exon start="24458" stop="24577"/>
              <exon start="25131" stop="25291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25218" stop="25324"/>
              <exon start="25955" stop="26068"/>
              <exon start="26230" stop="26324"/>
              <exon start="27513" stop="27619"/>
              <exon start="28251" stop="28310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26235" stop="26324"/>
              <exon start="27513" stop="27619"/>
              <exon start="28251" stop="28324"/>
              <exon start="28441" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26235" stop="26324"/>
              <exon start="27513" stop="27619"/>
              <exon start="28251" stop="28324"/>
              <exon start="28441" stop="28541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCTAAAGTTAGTAACTGATCAAATTTTCAGTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT : GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA : CTGTCGCAAAGGCACTAAGACAAGCTGCTGAAGGAAAGGCTTCTGCACAAGCTGAGGCTTCTGAATGGAAGCGTAAATATGAATTGGAGAGGACACGTAATTTGCAGTTAGAGAATAAAG : CAATGCCATCGGAGAAGCATTTAGATGAGAATGGGCGAGTCGTACACTTGACAAACAAACCTTTACTATCAGATGGCGCTGTGGAGAAATCCGACAGGTGTTGTGGGGAGCATGGAATTTGCTCTCATCAGGTTCTTCGTGATGGAGAACATGATCATGATGCCAGTGTTATTCGAAACAAGATGACCAGAAAG : GCATCATTCAAGTTGTCATGGCGTTGCAAAGGTGAAAAAAGTGATCAGAAAAAACACGACATCGTCTCTTTTGAAAAGGGAAACATAACAACTGCTGAACGCAGCAGTAAACAA : ATTTCTTTGAAGTGGGAATCTCCCCCACAAACGGTGCTTATATTGACAAAGCCAAATTCAACTGCTGTTAGAATACTTTGTTCAGAATTGGTCAG : ATGGCTAAAAGAGCAGAAAAGCTTGAACATTGTCGTTGAACCGCGGGTGCGCACTGAACTTCTAACAGAGTCGTCGTACTACCAGTTTGTACAAACTTGGGAAAATG : ACAAGGAAATTATGTCTCTCCACTCAAAGGTTGATCTTGTTGTAACTCTCGGTGGGGATGGAACCGTCCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTTGTATCCTTTTCTTCCTTTTAAAAGATTTTCGTTCATATATGTGGTATACGTAGGCTACAATGTGCTACTCTAATTACATCATTACATGGAAATAAAAGAAATGAAACCGAACTCCTATCGATAGATATATAAACCTGTCTTTAAAACATACAACACAGAAGCATGATTATTACTCTTC</gDNA_template>
            <first_frame> H  P  K  V  S  N  *  S  N  F  Q  *  R  E  K  E  I  S  F  R  E  R  K  R  E  V  F  G  E  L  L  N  F  S  C  Q  *  N  R  L  L  C  L  Q  T  N  T  P  L  M :   E  V  L  V  F  C  H  W  K  T  P  L  A  N  H  L  P  C  *  I  L  R  R  L  *  K  N  L  F  N  S  Q  F  F  T  G  L  M  T  I  *  L  S  L  P  R  L  *  E  :  L  S  Q  R  H  *  D  K  L  L  K  E  R  L  L  H  K  L  R  L  L  N  G  S  V  N  M  N  W  R  G  H  V  I  C  S  *  R  I  K  :  Q  C  H  R  R  S  I  *  M  R  M  G  E  S  Y  T  *  Q  T  N  L  Y  Y  Q  M  A  L  W  R  N  P  T  G  V  V  G  S  M  E  F  A  L  I  R  F  F  V  M  E  N  M  I  M  M  P  V  L  F  E  T  R  *  P  E  R :   H  H  S  S  C  H  G  V  A  K  V  K  K  V  I  R  K  N  T  T  S  S  L  L  K  R  E  T  *  Q  L  L  N  A  A  V  N  K :   F  L  *  S  G  N  L  P  H  K  R  C  L  Y  *  Q  S  Q  I  Q  L  L  L  E  Y  F  V  Q  N  W  S   : D  G  *  K  S  R  K  A  *  T  L  S  L  N  R  G  C  A  L  N  F  *  Q  S  R  R  T  T  S  L  Y  K  L  G  K  M  :  T  R  K  L  C  L  S  T  Q  R  L  I  L  L  *  L  S  V  G  M  E  P  S  F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  V  S  F  S  S  F  *  K  I  F  V  H  I  C  G  I  R  R  L  Q  C  A  T  L  I  T  S  L  H  G  N  K  R  N  E  T  E  L  L  S  I  D  I  *  T  C  L  *  N  I  Q  H  R  S  M  I  I  T  L  </first_frame>
            <second_frame>  I  L  K  L  V  T  D  Q  I  F  S  R  E  R  K  R  L  V  L  E  R  E  R  G  K  C  L  V  N  C  *  I  F  H  V  N  E  T  D  S  Y  V  S  K  Q  T  H  L  *   : W  K  C  *  C  F  A  T  G  K  R  L  *  R  I  T  C  H  V  E  F  *  E  G  C  R  R  T  Y  S  T  A  N  S  S  R  D  *  *  P  S  D  *  V  C  R  G  F  E  N :   C  R  K  G  T  K  T  S  C  *  R  K  G  F  C  T  S  *  G  F  *  M  E  A  *  I  *  I  G  E  D  T  *  F  A  V  R  E  *  S :   N  A  I  G  E  A  F  R  *  E  W  A  S  R  T  L  D  K  Q  T  F  T  I  R  W  R  C  G  E  I  R  Q  V  L  W  G  A  W  N  L  L  S  S  G  S  S  *  W  R  T  *  S  *  C  Q  C  Y  S  K  Q  D  D  Q  K   : G  I  I  Q  V  V  M  A  L  Q  R  *  K  K  *  S  E  K  T  R  H  R  L  F  *  K  G  K  H  N  N  C  *  T  Q  Q  *  T   : N  F  F  E  V  G  I  S  P  T  N  G  A  Y  I  D  K  A  K  F  N  C  C  *  N  T  L  F  R  I  G  Q  :  M  A  K  R  A  E  K  L  E  H  C  R  *  T  A  G  A  H  *  T  S  N  R  V  V  V  L  P  V  C  T  N  L  G  K  * :   Q  G  N  Y  V  S  P  L  K  G  *  S  C  C  N  S  R  W  G  W  N  R  P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L  Y  P  F  L  P  F  K  R  F  S  F  I  Y  V  V  Y  V  G  Y  N  V  L  L  *  L  H  H  Y  M  E  I  K  E  M  K  P  N  S  Y  R  *  I  Y  K  P  V  F  K  T  Y  N  T  E  A  *  L  L  L  F </second_frame>
            <third_frame>   S  *  S  *  *  L  I  K  F  S  V  E  R  E  R  D  *  F  *  R  E  K  E  G  S  V  W  *  I  V  E  F  F  M  S  M  K  Q  T  P  M  S  P  N  K  H  T  S  N  :  G  S  A  S  V  L  P  L  E  N  A  F  S  E  S  L  A  M  L  N  S  E  K  A  V  E  E  L  I  Q  Q  P  I  L  H  G  I  D  D  H  L  I  E  F  A  E  A  L  R   : T  V  A  K  A  L  R  Q  A  A  E  G  K  A  S  A  Q  A  E  A  S  E  W  K  R  K  Y  E  L  E  R  T  R  N  L  Q  L  E  N  K   : A  M  P  S  E  K  H  L  D  E  N  G  R  V  V  H  L  T  N  K  P  L  L  S  D  G  A  V  E  K  S  D  R  C  C  G  E  H  G  I  C  S  H  Q  V  L  R  D  G  E  H  D  H  D  A  S  V  I  R  N  K  M  T  R  K  :  A  S  F  K  L  S  W  R  C  K  G  E  K  S  D  Q  K  K  H  D  I  V  S  F  E  K  G  N  I  T  T  A  E  R  S  S  K  Q  :  I  S  L  K  W  E  S  P  P  Q  T  V  L  I  L  T  K  P  N  S  T  A  V  R  I  L  C  S  E  L  V  R :   W  L  K  E  Q  K  S  L  N  I  V  V  E  P  R  V  R  T  E  L  L  T  E  S  S  Y  Y  Q  F  V  Q  T  W  E  N   : D  K  E  I  M  S  L  H  S  K  V  D  L  V  V  T  L  G  G  D  G  T  V  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F  C  I  L  F  F  L  L  K  D  F  R  S  Y  M  W  Y  T  *  A  T  M  C  Y  S  N  Y  I  I  T  W  K  *  K  K  *  N  R  T  P  I  D  R  Y  I  N  L  S  L  K  H  T  T  Q  K  H  D  Y  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22227" stop="22289"/>
                    <exon start="24218" stop="24365"/>
                    <exon start="24458" stop="24577"/>
                    <exon start="25131" stop="25324"/>
                    <exon start="25955" stop="26068"/>
                    <exon start="26230" stop="26324"/>
                    <exon start="27513" stop="27619"/>
                    <exon start="28251" stop="28324"/>
                    <exon start="28441" stop="28572"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVEFFMSMKQTPMSPNKHTSNGSASVLPLENAFSESLAMLNSEKAVEELIQQPILHGIDDHLIEFAEALRTVAKALRQAAEGKASAQAEASEWKRKYELERTRNLQLENKAMPSEKHLDENGRVVHLTNKPLLSDGAVEKSDRCCGEHGICSHQVLRDGEHDHDASVIRNKMTRKASFKLSWRCKGEKSDQKKHDIVSFEKGNITTAERSSKQISLKWESPPQTVLILTKPNSTAVRILCSELVRWLKEQKSLNIVVEPRVRTELLTESSYYQFVQTWENDKEIMSLHSKVDLVVTLGGDGTVLWAASMFKGPVPPVVPFSLGSLGFMTPFCILFFLLKDFRSYMWYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28318" e_stop="28324"/>
            <exon e_start="28441" e_stop="28519"/>
            <exon e_start="28722" e_stop="29029"/>
            <exon e_start="29433" e_stop="29966"/>
            <exon e_start="30217" e_stop="30229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.758" e_score="1.000"/>
          <exon-only e_score="0.462"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28318" e_stop="28324" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28441" e_stop="28519" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.824">
            <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28722" e_stop="29029" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29433" e_stop="29966" e_length="534"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.758">
            <gDNA_intron_boundary i_start="29967" i_stop="30216" i_length="250"/>
          </intron>
          <exon e_serial="5" e_score="0.462">
            <gDNA_exon_boundary e_start="30217" e_stop="30229" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28455" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28734" stop="29029"/>
              <exon start="29433" stop="29960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28738" stop="29029"/>
              <exon start="29433" stop="29535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28794" stop="29029"/>
              <exon start="29433" stop="29613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28794" stop="29029"/>
              <exon start="29433" stop="29601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28934" stop="29029"/>
              <exon start="29433" stop="29966"/>
              <exon start="30217" stop="30229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT : ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG : GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCA : AATCTCATTAACA</gDNA_template>
            <first_frame> P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L :   *  *  A  L  Q  G  I  S  R  F  N  S  S  W  S  H  K  H  Y  T  E  A  S  S  P  V  S  R  D  *  R  F  S  *  K  *  S  G  *  *  R  A  H  T  C  S  Q  R  S  H  N  *  P  W  D  F  I  I  F  N  K  S  R  M  L  L  R  *  F  F  C  Y  L  R  T  R  G  W  L  N  F  I  D  N  I  W  K  H  S  I  F  S  C  S  W  R  I  N  G  P  S  S   : G  S  R  H  P  L  Y  T  Y  L  P  T  F  F  I  L  S  P  S  H  F  A  R  V  C  D  N  T  S  T  S  T  F  Q  Q  Q  R  S  C  M  G  V  I  *  W  K  R  Q  E  K  V  S  T  G  R  R  P  C  L  *  H  G  N  L  A  C  T  N  C  M  S  S  *  F  H  Q  *  L  F  T  E  H  T  *  R  S  S  L  E  F  E  E  D  A  I  F  *  W  P  S  *  D  V  I  I  S  T  N  H  L  S  G  K  E  M  R  G  F  P  N  M  T  C  F  E  A  E  R  S  *  Y  I  Y  T  P  I  Y  I  Y  K  F  K  C  R  T  N  Y  E  D  D  E  S  Q  L  *  V  L  Y  C  C  F  *  L  R  H  I  I  T  I  I  R  I  *  K  E  V  Y  T   : K  S  H  *   </first_frame>
            <second_frame>  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F   : Y  S  E  R  Y  K  E  Y  L  D  S  I  L  R  G  P  I  S  I  T  L  R  H  R  L  Q  C  H  V  I  R  D  S  A  K  S  D  L  D  S  E  E  P  I  L  V  L  N  E  V  T  I  D  R  G  I  S  S  F  L  T  N  L  E  C  Y  C  D  N  S  F  V  T  C  V  Q  G  D  G  L  I  L  S  T  T  S  G  S  T  A  Y  S  L  A  A  G  G  S  M  V  H  P  Q  :  V  P  G  I  L  F  T  P  I  C  P  H  S  L  S  F  R  P  L  I  L  P  E  Y  V  T  I  R  V  Q  V  P  F  N  S  R  G  H  A  W  A  S  F  D  G  K  D  R  K  K  L  A  P  G  D  A  L  V  C  S  M  A  T  W  P  V  P  T  A  C  Q  A  D  S  T  S  D  F  L  R  S  I  H  E  G  L  H  W  N  L  R  K  T  Q  S  F  D  G  P  R  E  T  *  S  S  L  L  T  I  Y  L  V  R  K  *  E  V  F  R  I  *  L  V  S  K  Q  R  D  L  D  T  Y  I  H  L  Y  I  Y  I  S  S  N  V  E  L  T  M  R  M  M  S  L  N  F  R  C  F  I  V  V  F  N  L  D  I  *  L  Q  *  *  E  Y  R  R  K  F  I  P  :  N  L  I  N  </second_frame>
            <third_frame>   F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  :  I  V  S  V  T  R  N  I  S  I  Q  F  F  V  V  P  *  A  L  H  *  G  I  V  S  S  V  T  *  L  E  I  Q  L  K  V  I  W  I  V  K  S  P  Y  L  F  S  T  K  S  Q  L  T  V  G  F  H  H  F  *  Q  I  *  N  A  I  A  I  I  L  L  L  L  A  Y  K  G  M  A  *  F  Y  R  Q  H  L  E  A  Q  H  I  L  L  Q  L  E  D  Q  W  S  I  L  R :   F  P  A  S  S  L  H  L  S  A  H  I  L  Y  P  F  A  L  S  F  C  P  S  M  *  Q  Y  E  Y  K  Y  L  S  T  A  E  V  M  H  G  R  H  L  M  E  K  T  G  K  S  *  H  R  E  T  P  L  F  V  A  W  Q  L  G  L  Y  Q  L  H  V  K  L  I  P  P  V  T  F  Y  G  A  Y  M  K  V  F  T  G  I  *  G  R  R  N  L  L  M  A  L  V  R  R  D  H  L  Y  *  P  F  I  W  *  G  N  E  R  F  S  E  Y  D  L  F  R  S  R  E  I  L  I  H  I  Y  T  Y  I  Y  I  *  V  Q  M  *  N  *  L  *  G  *  *  V  S  T  L  G  A  L  L  L  F  L  T  *  T  Y  N  Y  N  N  K  N  I  E  G  S  L  Y  Q :   I  S  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28319" stop="28324"/>
                    <exon start="28441" stop="28519"/>
                    <exon start="28722" stop="29029"/>
                    <exon start="29433" stop="29741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWAASMFKGPVPPVVPFSLGSLGFMTPFYSERYKEYLDSILRGPISITLRHRLQCHVIRDSAKSDLDSEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGHAWASFDGKDRKKLAPGDALVCSMATWPVPTACQADSTSDFLRSIHEGLHWNLRKTQSFDGPRET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28318" e_stop="28324"/>
            <exon e_start="28441" e_stop="28519"/>
            <exon e_start="28722" e_stop="29029"/>
            <exon e_start="29433" e_stop="29963"/>
            <exon e_start="30014" e_stop="30040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.407"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28318" e_stop="28324" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28441" e_stop="28519" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.824">
            <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28722" e_stop="29029" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29433" e_stop="29963" e_length="531"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29964" i_stop="30013" i_length="50"/>
          </intron>
          <exon e_serial="5" e_score="0.407">
            <gDNA_exon_boundary e_start="30014" e_stop="30040" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28455" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28734" stop="29029"/>
              <exon start="29433" stop="29960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28738" stop="29029"/>
              <exon start="29433" stop="29535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28794" stop="29029"/>
              <exon start="29433" stop="29613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28794" stop="29029"/>
              <exon start="29433" stop="29601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28887" stop="29029"/>
              <exon start="29433" stop="29963"/>
              <exon start="30014" stop="30040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT : ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG : GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATA : GTGAGTGATAAAAAGATCTATGGGAAG</gDNA_template>
            <first_frame> P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L :   *  *  A  L  Q  G  I  S  R  F  N  S  S  W  S  H  K  H  Y  T  E  A  S  S  P  V  S  R  D  *  R  F  S  *  K  *  S  G  *  *  R  A  H  T  C  S  Q  R  S  H  N  *  P  W  D  F  I  I  F  N  K  S  R  M  L  L  R  *  F  F  C  Y  L  R  T  R  G  W  L  N  F  I  D  N  I  W  K  H  S  I  F  S  C  S  W  R  I  N  G  P  S  S   : G  S  R  H  P  L  Y  T  Y  L  P  T  F  F  I  L  S  P  S  H  F  A  R  V  C  D  N  T  S  T  S  T  F  Q  Q  Q  R  S  C  M  G  V  I  *  W  K  R  Q  E  K  V  S  T  G  R  R  P  C  L  *  H  G  N  L  A  C  T  N  C  M  S  S  *  F  H  Q  *  L  F  T  E  H  T  *  R  S  S  L  E  F  E  E  D  A  I  F  *  W  P  S  *  D  V  I  I  S  T  N  H  L  S  G  K  E  M  R  G  F  P  N  M  T  C  F  E  A  E  R  S  *  Y  I  Y  T  P  I  Y  I  Y  K  F  K  C  R  T  N  Y  E  D  D  E  S  Q  L  *  V  L  Y  C  C  F  *  L  R  H  I  I  T  I  I  R  I  *  K  E  V  Y   : S  E  *  *  K  D  L  W  E  </first_frame>
            <second_frame>  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F   : Y  S  E  R  Y  K  E  Y  L  D  S  I  L  R  G  P  I  S  I  T  L  R  H  R  L  Q  C  H  V  I  R  D  S  A  K  S  D  L  D  S  E  E  P  I  L  V  L  N  E  V  T  I  D  R  G  I  S  S  F  L  T  N  L  E  C  Y  C  D  N  S  F  V  T  C  V  Q  G  D  G  L  I  L  S  T  T  S  G  S  T  A  Y  S  L  A  A  G  G  S  M  V  H  P  Q  :  V  P  G  I  L  F  T  P  I  C  P  H  S  L  S  F  R  P  L  I  L  P  E  Y  V  T  I  R  V  Q  V  P  F  N  S  R  G  H  A  W  A  S  F  D  G  K  D  R  K  K  L  A  P  G  D  A  L  V  C  S  M  A  T  W  P  V  P  T  A  C  Q  A  D  S  T  S  D  F  L  R  S  I  H  E  G  L  H  W  N  L  R  K  T  Q  S  F  D  G  P  R  E  T  *  S  S  L  L  T  I  Y  L  V  R  K  *  E  V  F  R  I  *  L  V  S  K  Q  R  D  L  D  T  Y  I  H  L  Y  I  Y  I  S  S  N  V  E  L  T  M  R  M  M  S  L  N  F  R  C  F  I  V  V  F  N  L  D  I  *  L  Q  *  *  E  Y  R  R  K  F  I  :  V  S  D  K  K  I  Y  G  K </second_frame>
            <third_frame>   F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  :  I  V  S  V  T  R  N  I  S  I  Q  F  F  V  V  P  *  A  L  H  *  G  I  V  S  S  V  T  *  L  E  I  Q  L  K  V  I  W  I  V  K  S  P  Y  L  F  S  T  K  S  Q  L  T  V  G  F  H  H  F  *  Q  I  *  N  A  I  A  I  I  L  L  L  L  A  Y  K  G  M  A  *  F  Y  R  Q  H  L  E  A  Q  H  I  L  L  Q  L  E  D  Q  W  S  I  L  R :   F  P  A  S  S  L  H  L  S  A  H  I  L  Y  P  F  A  L  S  F  C  P  S  M  *  Q  Y  E  Y  K  Y  L  S  T  A  E  V  M  H  G  R  H  L  M  E  K  T  G  K  S  *  H  R  E  T  P  L  F  V  A  W  Q  L  G  L  Y  Q  L  H  V  K  L  I  P  P  V  T  F  Y  G  A  Y  M  K  V  F  T  G  I  *  G  R  R  N  L  L  M  A  L  V  R  R  D  H  L  Y  *  P  F  I  W  *  G  N  E  R  F  S  E  Y  D  L  F  R  S  R  E  I  L  I  H  I  Y  T  Y  I  Y  I  *  V  Q  M  *  N  *  L  *  G  *  *  V  S  T  L  G  A  L  L  L  F  L  T  *  T  Y  N  Y  N  N  K  N  I  E  G  S  L  * :   *  V  I  K  R  S  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28319" stop="28324"/>
                    <exon start="28441" stop="28519"/>
                    <exon start="28722" stop="29029"/>
                    <exon start="29433" stop="29741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWAASMFKGPVPPVVPFSLGSLGFMTPFYSERYKEYLDSILRGPISITLRHRLQCHVIRDSAKSDLDSEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGHAWASFDGKDRKKLAPGDALVCSMATWPVPTACQADSTSDFLRSIHEGLHWNLRKTQSFDGPRET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28318" e_stop="28324"/>
            <exon e_start="28441" e_stop="28519"/>
            <exon e_start="28722" e_stop="29029"/>
            <exon e_start="29433" e_stop="29972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28318" e_stop="28324" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28325" i_stop="28440" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28441" e_stop="28519" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.824">
            <gDNA_intron_boundary i_start="28520" i_stop="28721" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28722" e_stop="29029" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="29030" i_stop="29432" i_length="403"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29433" e_stop="29972" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="28324"/>
              <exon start="28441" stop="28519"/>
              <exon start="28722" stop="29019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28455" stop="28519"/>
              <exon start="28722" stop="29029"/>
              <exon start="29433" stop="29614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28734" stop="29029"/>
              <exon start="29433" stop="29960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28738" stop="29029"/>
              <exon start="29433" stop="29535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28758" stop="29029"/>
              <exon start="29433" stop="29596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28794" stop="29029"/>
              <exon start="29433" stop="29613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28794" stop="29029"/>
              <exon start="29433" stop="29601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28839" stop="29029"/>
              <exon start="29433" stop="29972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTGG : GCAGCTTCAATGTTCAAAGGTCCAGTTCCTCCGGTTGTTCCATTTTCTTTAGGTTCTCTTGGCTTCATGACCCCGTTTT : ATAGTGAGCGTTACAAGGAATATCTCGATTCAATTCTTCGTGGTCCCATAAGCATTACACTGAGGCATCGTCTCCAGTGTCACGTGATTAGAGATTCAGCTAAAAGTGATCTGGATAGTGAAGAGCCCATACTTGTTCTCAACGAAGTCACAATTGACCGTGGGATTTCATCATTTTTAACAAATCTAGAATGCTATTGCGATAATTCTTTTGTTACTTGCGTACAAGGGGATGGCTTAATTTTATCGACAACATCTGGAAGCACAGCATATTCTCTTGCAGCTGGAGGATCAATGGTCCATCCTCAG : GTTCCCGGCATCCTCTTTACACCTATCTGCCCACATTCTTTATCCTTTCGCCCTCTCATTTTGCCCGAGTATGTGACAATACGAGTACAAGTACCTTTCAACAGCAGAGGTCATGCATGGGCGTCATTTGATGGAAAAGACAGGAAAAAGTTAGCACCGGGAGACGCCCTTGTTTGTAGCATGGCAACTTGGCCTGTACCAACTGCATGTCAAGCTGATTCCACCAGTGACTTTTTACGGAGCATACATGAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTACTAACCATTTATCTGGTAAGGAAATGAGAGGTTTTCCGAATATGACTTGTTTCGAAGCAGAGAGATCTTGATACATATATACACCTATATATATATATAAGTTCAAATGTAGAACTAACTATGAGGATGATGAGTCTCAACTTTAGGTGCTTTATTGTTGTTTTTAACTTAGACATATAATTACAATAATAAGAATATAGAAGGAAGTTTATACCATTTTTT</gDNA_template>
            <first_frame> P  L   : G  S  F  N  V  Q  R  S  S  S  S  G  C  S  I  F  F  R  F  S  W  L  H  D  P  V  L :   *  *  A  L  Q  G  I  S  R  F  N  S  S  W  S  H  K  H  Y  T  E  A  S  S  P  V  S  R  D  *  R  F  S  *  K  *  S  G  *  *  R  A  H  T  C  S  Q  R  S  H  N  *  P  W  D  F  I  I  F  N  K  S  R  M  L  L  R  *  F  F  C  Y  L  R  T  R  G  W  L  N  F  I  D  N  I  W  K  H  S  I  F  S  C  S  W  R  I  N  G  P  S  S   : G  S  R  H  P  L  Y  T  Y  L  P  T  F  F  I  L  S  P  S  H  F  A  R  V  C  D  N  T  S  T  S  T  F  Q  Q  Q  R  S  C  M  G  V  I  *  W  K  R  Q  E  K  V  S  T  G  R  R  P  C  L  *  H  G  N  L  A  C  T  N  C  M  S  S  *  F  H  Q  *  L  F  T  E  H  T  *  R  S  S  L  E  F  E  E  D  A  I  F  *  W  P  S  *  D  V  I  I  S  T  N  H  L  S  G  K  E  M  R  G  F  P  N  M  T  C  F  E  A  E  R  S  *  Y  I  Y  T  P  I  Y  I  Y  K  F  K  C  R  T  N  Y  E  D  D  E  S  Q  L  *  V  L  Y  C  C  F  *  L  R  H  I  I  T  I  I  R  I  *  K  E  V  Y  T  I  F  </first_frame>
            <second_frame>  L  W  :  A  A  S  M  F  K  G  P  V  P  P  V  V  P  F  S  L  G  S  L  G  F  M  T  P  F   : Y  S  E  R  Y  K  E  Y  L  D  S  I  L  R  G  P  I  S  I  T  L  R  H  R  L  Q  C  H  V  I  R  D  S  A  K  S  D  L  D  S  E  E  P  I  L  V  L  N  E  V  T  I  D  R  G  I  S  S  F  L  T  N  L  E  C  Y  C  D  N  S  F  V  T  C  V  Q  G  D  G  L  I  L  S  T  T  S  G  S  T  A  Y  S  L  A  A  G  G  S  M  V  H  P  Q  :  V  P  G  I  L  F  T  P  I  C  P  H  S  L  S  F  R  P  L  I  L  P  E  Y  V  T  I  R  V  Q  V  P  F  N  S  R  G  H  A  W  A  S  F  D  G  K  D  R  K  K  L  A  P  G  D  A  L  V  C  S  M  A  T  W  P  V  P  T  A  C  Q  A  D  S  T  S  D  F  L  R  S  I  H  E  G  L  H  W  N  L  R  K  T  Q  S  F  D  G  P  R  E  T  *  S  S  L  L  T  I  Y  L  V  R  K  *  E  V  F  R  I  *  L  V  S  K  Q  R  D  L  D  T  Y  I  H  L  Y  I  Y  I  S  S  N  V  E  L  T  M  R  M  M  S  L  N  F  R  C  F  I  V  V  F  N  L  D  I  *  L  Q  *  *  E  Y  R  R  K  F  I  P  F  F </second_frame>
            <third_frame>   F  G :   Q  L  Q  C  S  K  V  Q  F  L  R  L  F  H  F  L  *  V  L  L  A  S  *  P  R  F  :  I  V  S  V  T  R  N  I  S  I  Q  F  F  V  V  P  *  A  L  H  *  G  I  V  S  S  V  T  *  L  E  I  Q  L  K  V  I  W  I  V  K  S  P  Y  L  F  S  T  K  S  Q  L  T  V  G  F  H  H  F  *  Q  I  *  N  A  I  A  I  I  L  L  L  L  A  Y  K  G  M  A  *  F  Y  R  Q  H  L  E  A  Q  H  I  L  L  Q  L  E  D  Q  W  S  I  L  R :   F  P  A  S  S  L  H  L  S  A  H  I  L  Y  P  F  A  L  S  F  C  P  S  M  *  Q  Y  E  Y  K  Y  L  S  T  A  E  V  M  H  G  R  H  L  M  E  K  T  G  K  S  *  H  R  E  T  P  L  F  V  A  W  Q  L  G  L  Y  Q  L  H  V  K  L  I  P  P  V  T  F  Y  G  A  Y  M  K  V  F  T  G  I  *  G  R  R  N  L  L  M  A  L  V  R  R  D  H  L  Y  *  P  F  I  W  *  G  N  E  R  F  S  E  Y  D  L  F  R  S  R  E  I  L  I  H  I  Y  T  Y  I  Y  I  *  V  Q  M  *  N  *  L  *  G  *  *  V  S  T  L  G  A  L  L  L  F  L  T  *  T  Y  N  Y  N  N  K  N  I  E  G  S  L  Y  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28319" stop="28324"/>
                    <exon start="28441" stop="28519"/>
                    <exon start="28722" stop="29029"/>
                    <exon start="29433" stop="29741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWAASMFKGPVPPVVPFSLGSLGFMTPFYSERYKEYLDSILRGPISITLRHRLQCHVIRDSAKSDLDSEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTIRVQVPFNSRGHAWASFDGKDRKKLAPGDALVCSMATWPVPTACQADSTSDFLRSIHEGLHWNLRKTQSFDGPRET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="22173" e_stop="22289"/>
            <exon e_start="22610" e_stop="22623"/>
            <exon e_start="24218" e_stop="24365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.060" acc_prob="0.082" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="0.643"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22173" e_stop="22289" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.060" acc_prob="0.082">
            <gDNA_intron_boundary i_start="22290" i_stop="22609" i_length="320"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="22610" e_stop="22623" e_length="14"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="22624" i_stop="24217" i_length="1594"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="24218" e_stop="24365" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22173" stop="22289"/>
              <exon start="22610" stop="22623"/>
              <exon start="24218" stop="24365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGAGAGAGAAAGAGATTAGTTTTAGAGAGAGAAAGAGGGAAGTGTTTGGTGAATTGTTGAATTTTTCATGTCAATGAAACAGACTCCTATGTCTCCAAACAAACACACCTCTAAT : AGGGAGTAGATTTT : GGAAGTGCTAGTGTTTTGCCACTGGAAAACGCCTTTAGCGAATCACTTGCCATGTTGAATTCTGAGAAGGCTGTAGAAGAACTTATTCAACAGCCAATTCTTCACGGGATTGATGACCATCTGATTGAGTTTGCCGAGGCTTTGAGAA</gDNA_template>
            <first_frame> V  E  R  E  R  D  *  F  *  R  E  K  E  G  S  V  W  *  I  V  E  F  F  M  S  M  K  Q  T  P  M  S  P  N  K  H  T  S  N  :  R  E  *  I  L :   E  V  L  V  F  C  H  W  K  T  P  L  A  N  H  L  P  C  *  I  L  R  R  L  *  K  N  L  F  N  S  Q  F  F  T  G  L  M  T  I  *  L  S  L  P  R  L  *  E </first_frame>
            <second_frame>  *  R  E  K  E  I  S  F  R  E  R  K  R  E  V  F  G  E  L  L  N  F  S  C  Q  *  N  R  L  L  C  L  Q  T  N  T  P  L  I :   G  S  R  F   : W  K  C  *  C  F  A  T  G  K  R  L  *  R  I  T  C  H  V  E  F  *  E  G  C  R  R  T  Y  S  T  A  N  S  S  R  D  *  *  P  S  D  *  V  C  R  G  F  E   </second_frame>
            <third_frame>   R  E  R  K  R  L  V  L  E  R  E  R  G  K  C  L  V  N  C  *  I  F  H  V  N  E  T  D  S  Y  V  S  K  Q  T  H  L  *   : *  G  V  D  F  :  G  S  A  S  V  L  P  L  E  N  A  F  S  E  S  L  A  M  L  N  S  E  K  A  V  E  E  L  I  Q  Q  P  I  L  H  G  I  D  D  H  L  I  E  F  A  E  A  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0095M15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29959" PGL_stop="29605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29959" e_stop="29605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="29959" e_stop="29605" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29959" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTCCTTCTATATTCTTATTATTGTAATTATATGTCTAAGTTAAAAACAACAATAAAGCACCTAAAGTTGAGACTCATCATCCTCATAGTTAGTTCTACATTTGAACTTATATATATATATAGGTGTATATATGTATCAAGATCTCTCTGCTTCGAAACAAGTCATATTCGGAAAACCTCTCATTTCCTTACCAGATAAATGGTTAGTAGAGATGATCACGTCTCACGAGGGCCATCAAAAGATTGCGTCTTCCTCAAATTCCAGTGAAGACCTTCATGTATGCTCCGTAAAAAGTCACTGGTGGAATCAGCTTGACATGCAGTTGGTACAGGCCAAGTTGCCATGCTACAAA</gDNA_template>
            <first_frame> N  F  L  L  Y  S  Y  Y  C  N  Y  M  S  K  L  K  T  T  I  K  H  L  K  L  R  L  I  I  L  I  V  S  S  T  F  E  L  I  Y  I  Y  R  C  I  Y  V  S  R  S  L  C  F  E  T  S  H  I  R  K  T  S  H  F  L  T  R  *  M  V  S  R  D  D  H  V  S  R  G  P  S  K  D  C  V  F  L  K  F  Q  *  R  P  S  C  M  L  R  K  K  S  L  V  E  S  A  *  H  A  V  G  T  G  Q  V  A  M  L  Q  </first_frame>
            <second_frame>  T  S  F  Y  I  L  I  I  V  I  I  C  L  S  *  K  Q  Q  *  S  T  *  S  *  D  S  S  S  S  *  L  V  L  H  L  N  L  Y  I  Y  I  G  V  Y  M  Y  Q  D  L  S  A  S  K  Q  V  I  F  G  K  P  L  I  S  L  P  D  K  W  L  V  E  M  I  T  S  H  E  G  H  Q  K  I  A  S  S  S  N  S  S  E  D  L  H  V  C  S  V  K  S  H  W  W  N  Q  L  D  M  Q  L  V  Q  A  K  L  P  C  Y  K </second_frame>
            <third_frame>   L  P  S  I  F  L  L  L  *  L  Y  V  *  V  K  N  N  N  K  A  P  K  V  E  T  H  H  P  H  S  *  F  Y  I  *  T  Y  I  Y  I  *  V  Y  I  C  I  K  I  S  L  L  R  N  K  S  Y  S  E  N  L  S  F  P  Y  Q  I  N  G  *  *  R  *  S  R  L  T  R  A  I  K  R  L  R  L  P  Q  I  P  V  K  T  F  M  Y  A  P  *  K  V  T  G  G  I  S  L  T  C  S  W  Y  R  P  S  C  H  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29868" stop="29605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLHLNLYIYIGVYMYQDLSASKQVIFGKPLISLPDKWLVEMITSHEGHQKIASSSNSSEDLHVCSVKSHWWNQLDMQLVQAKLPCYK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29959" stop="29759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLLYSYYCNYMSKLKTTIKHLKLRLIILIVSSTFELIYIYRCIYVSRSLCFETSHIRKTSHFLTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36152" PGL_stop="39764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36152" e_stop="36351"/>
            <exon e_start="37363" e_stop="37532"/>
            <exon e_start="38090" e_stop="38281"/>
            <exon e_start="38701" e_stop="38863"/>
            <exon e_start="38998" e_stop="39184"/>
            <exon e_start="39351" e_stop="39764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="36152" e_stop="36351" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36352" i_stop="37362" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37363" e_stop="37532" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37533" i_stop="38089" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38090" e_stop="38281" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38282" i_stop="38700" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38701" e_stop="38863" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="38864" i_stop="38997" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38998" e_stop="39184" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="39185" i_stop="39350" i_length="166"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="39351" e_stop="39764" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36152" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36160" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36183" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36190" stop="36351"/>
              <exon start="37363" stop="37532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36192" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36192" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36198" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36201" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36201" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36202" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36205" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36207" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36207" stop="36351"/>
              <exon start="37363" stop="37491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36213" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36217" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36217" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36217" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36221" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36221" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36222" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36222" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36225" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36226" stop="36351"/>
              <exon start="37363" stop="37462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36267" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36303" stop="36351"/>
              <exon start="37363" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37396" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37417" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37417" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37478" stop="37532"/>
              <exon start="38090" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38127" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38127" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38194" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38215" stop="38281"/>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38701" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38730" stop="38863"/>
              <exon start="38998" stop="39184"/>
              <exon start="39351" stop="39764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39026" stop="39184"/>
              <exon start="39351" stop="39685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39088" stop="39184"/>
              <exon start="39351" stop="39685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39093" stop="39184"/>
              <exon start="39351" stop="39685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243476" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39182" stop="39184"/>
              <exon start="39351" stop="39674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39395" stop="39674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATATCTCTTTTGTCGGCTTTTACACCACTCAGTCTTCTACACAGAGTGCTGTTAGGTGAAAAAAAGAAAGAGAGAGCTCACAAAAATGGCGATGAGAACAGTATGTGTAACAGGAGCTTCAGGCTACATAGCTTCATGGCTAGTCAAATTTTTGCTTCAGCGTGGTTATACTGTTAAAGCTACTGTTCGCGATCTCA : ATGATCAAAAAAAGGTAGATCACTTGACATCCCTGGATGGAGCTAAGGAGAGACTCCACTTGTTCAAAGCGGACCTACTGGAAGAAGGTTCCTTTGATGCTGTTGTTGAGGGGTGTGAAGGCGTGTTTCATACAGCATCTCCTTTTTACCTTGGAGTCAAGGATCCACAG : GTGGAGATGATTGATCCTGCACTGAAGGGGACACTTAATGTTCTTGGATCAGTTGCAAAGACACCATCTGTTAGAAGAGTGGTCTTGACATCATCTGTTGCAGCAGTTGCTTTCAATGGCAAGCCAAGAACCCCTGAAGTGGTGGTTGATGAAACATGGTGGTCAGATCCTGACTTTTGCAGAGAATCACAG : CTCTGGTATGTGCTTTCGAAGACATTAGCTGAGGATGCTGCGTGGAAGTTTGTGAAAGAGAAAGCTTTCGATATGGTTACAATAAACCCAGCAATGGTTATAGGCGGTTTGTTGCAACCAACGCTTAATACAAGTGCTGCTGCTATCTTACAACTGCTAAATG : GTTCTGAAACATACCCAAATTCTACATTTGGTTGGGTTAACGTGAAAGATGTCGCCCTTGCACATATTCTGGCATTTGAAAACCCTTCAGCTAATGGTAGATATTTAATGGTGGAGTCAGTTGCACACTACTCTGAGATAGTTAAGATATTACGCGAGCTTTACCCTACACTGAAGCTTCCAGAAAA : GTGTGCTGATGATAAGCCATTTACGCCAACGTACCAGGTTAACGTAGAAAGAGCCAAAAAATTGGGTATTGAATTCATTCCTTTGGCGGAAAGCGTCAAGGAAACAGCTGAAAGCTTGAAAGAGAAGAAGTTTTACTGAAATGCTTAGCCTTATTGTGAATGAATCTGGAAATTGTAGAGAACATGCTTATGTACACCTTCATGTTTTACTAAAACCTTTCGTATTATGTCGTTTTGTGATCCGCAACTTTAATGGTGTCGTTAAGTTTAAACATTCCGTGGATGTAGTTGAATCAAAGATACGATCGATGTGATCTTGTGTTTGGAGGTTACAAGTGTTTGTGCATTTGGTTTTGGCTTGTTGTTTATGTTATGTGCAAGATCTGTACCAGGATGGTTCTGTATGTTTTTCTT</gDNA_template>
            <first_frame> C  I  S  L  L  S  A  F  T  P  L  S  L  L  H  R  V  L  L  G  E  K  K  K  E  R  A  H  K  N  G  D  E  N  S  M  C  N  R  S  F  R  L  H  S  F  M  A  S  Q  I  F  A  S  A  W  L  Y  C  *  S  Y  C  S  R  S  Q :   *  S  K  K  G  R  S  L  D  I  P  G  W  S  *  G  E  T  P  L  V  Q  S  G  P  T  G  R  R  F  L  *  C  C  C  *  G  V  *  R  R  V  S  Y  S  I  S  F  L  P  W  S  Q  G  S  T   : G  G  D  D  *  S  C  T  E  G  D  T  *  C  S  W  I  S  C  K  D  T  I  C  *  K  S  G  L  D  I  I  C  C  S  S  C  F  Q  W  Q  A  K  N  P  *  S  G  G  *  *  N  M  V  V  R  S  *  L  L  Q  R  I  T   : A  L  V  C  A  F  E  D  I  S  *  G  C  C  V  E  V  C  E  R  E  S  F  R  Y  G  Y  N  K  P  S  N  G  Y  R  R  F  V  A  T  N  A  *  Y  K  C  C  C  Y  L  T  T  A  K  W :   F  *  N  I  P  K  F  Y  I  W  L  G  *  R  E  R  C  R  P  C  T  Y  S  G  I  *  K  P  F  S  *  W  *  I  F  N  G  G  V  S  C  T  L  L  *  D  S  *  D  I  T  R  A  L  P  Y  T  E  A  S  R  K  :  V  C  *  *  *  A  I  Y  A  N  V  P  G  *  R  R  K  S  Q  K  I  G  Y  *  I  H  S  F  G  G  K  R  Q  G  N  S  *  K  L  E  R  E  E  V  L  L  K  C  L  A  L  L  *  M  N  L  E  I  V  E  N  M  L  M  Y  T  F  M  F  Y  *  N  L  S  Y  Y  V  V  L  *  S  A  T  L  M  V  S  L  S  L  N  I  P  W  M  *  L  N  Q  R  Y  D  R  C  D  L  V  F  G  G  Y  K  C  L  C  I  W  F  W  L  V  V  Y  V  M  C  K  I  C  T  R  M  V  L  Y  V  F  L </first_frame>
            <second_frame>  V  Y  L  F  C  R  L  L  H  H  S  V  F  Y  T  E  C  C  *  V  K  K  R  K  R  E  L  T  K  M  A  M  R  T  V  C  V  T  G  A  S  G  Y  I  A  S  W  L  V  K  F  L  L  Q  R  G  Y  T  V  K  A  T  V  R  D  L   : N  D  Q  K  K  V  D  H  L  T  S  L  D  G  A  K  E  R  L  H  L  F  K  A  D  L  L  E  E  G  S  F  D  A  V  V  E  G  C  E  G  V  F  H  T  A  S  P  F  Y  L  G  V  K  D  P  Q  :  V  E  M  I  D  P  A  L  K  G  T  L  N  V  L  G  S  V  A  K  T  P  S  V  R  R  V  V  L  T  S  S  V  A  A  V  A  F  N  G  K  P  R  T  P  E  V  V  V  D  E  T  W  W  S  D  P  D  F  C  R  E  S  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  A  F  D  M  V  T  I  N  P  A  M  V  I  G  G  L  L  Q  P  T  L  N  T  S  A  A  A  I  L  Q  L  L  N   : G  S  E  T  Y  P  N  S  T  F  G  W  V  N  V  K  D  V  A  L  A  H  I  L  A  F  E  N  P  S  A  N  G  R  Y  L  M  V  E  S  V  A  H  Y  S  E  I  V  K  I  L  R  E  L  Y  P  T  L  K  L  P  E  K :   C  A  D  D  K  P  F  T  P  T  Y  Q  V  N  V  E  R  A  K  K  L  G  I  E  F  I  P  L  A  E  S  V  K  E  T  A  E  S  L  K  E  K  K  F  Y  *  N  A  *  P  Y  C  E  *  I  W  K  L  *  R  T  C  L  C  T  P  S  C  F  T  K  T  F  R  I  M  S  F  C  D  P  Q  L  *  W  C  R  *  V  *  T  F  R  G  C  S  *  I  K  D  T  I  D  V  I  L  C  L  E  V  T  S  V  C  A  F  G  F  G  L  L  F  M  L  C  A  R  S  V  P  G  W  F  C  M  F  F   </second_frame>
            <third_frame>   Y  I  S  F  V  G  F  Y  T  T  Q  S  S  T  Q  S  A  V  R  *  K  K  E  R  E  S  S  Q  K  W  R  *  E  Q  Y  V  *  Q  E  L  Q  A  T  *  L  H  G  *  S  N  F  C  F  S  V  V  I  L  L  K  L  L  F  A  I  S  :  M  I  K  K  R  *  I  T  *  H  P  W  M  E  L  R  R  D  S  T  C  S  K  R  T  Y  W  K  K  V  P  L  M  L  L  L  R  G  V  K  A  C  F  I  Q  H  L  L  F  T  L  E  S  R  I  H  R :   W  R  *  L  I  L  H  *  R  G  H  L  M  F  L  D  Q  L  Q  R  H  H  L  L  E  E  W  S  *  H  H  L  L  Q  Q  L  L  S  M  A  S  Q  E  P  L  K  W  W  L  M  K  H  G  G  Q  I  L  T  F  A  E  N  H  S :   S  G  M  C  F  R  R  H  *  L  R  M  L  R  G  S  L  *  K  R  K  L  S  I  W  L  Q  *  T  Q  Q  W  L  *  A  V  C  C  N  Q  R  L  I  Q  V  L  L  L  S  Y  N  C  *  M  :  V  L  K  H  T  Q  I  L  H  L  V  G  L  T  *  K  M  S  P  L  H  I  F  W  H  L  K  T  L  Q  L  M  V  D  I  *  W  W  S  Q  L  H  T  T  L  R  *  L  R  Y  Y  A  S  F  T  L  H  *  S  F  Q  K   : S  V  L  M  I  S  H  L  R  Q  R  T  R  L  T  *  K  E  P  K  N  W  V  L  N  S  F  L  W  R  K  A  S  R  K  Q  L  K  A  *  K  R  R  S  F  T  E  M  L  S  L  I  V  N  E  S  G  N  C  R  E  H  A  Y  V  H  L  H  V  L  L  K  P  F  V  L  C  R  F  V  I  R  N  F  N  G  V  V  K  F  K  H  S  V  D  V  V  E  S  K  I  R  S  M  *  S  C  V  W  R  L  Q  V  F  V  H  L  V  L  A  C  C  L  C  Y  V  Q  D  L  Y  Q  D  G  S  V  C  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36210" stop="36351"/>
                    <exon start="37363" stop="37532"/>
                    <exon start="38090" stop="38281"/>
                    <exon start="38701" stop="38863"/>
                    <exon start="38998" stop="39184"/>
                    <exon start="39351" stop="39489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKKRKRELTKMAMRTVCVTGASGYIASWLVKFLLQRGYTVKATVRDLNDQKKVDHLTSLDGAKERLHLFKADLLEEGSFDAVVEGCEGVFHTASPFYLGVKDPQVEMIDPALKGTLNVLGSVAKTPSVRRVVLTSSVAAVAFNGKPRTPEVVVDETWWSDPDFCRESQLWYVLSKTLAEDAAWKFVKEKAFDMVTINPAMVIGGLLQPTLNTSAAAILQLLNGSETYPNSTFGWVNVKDVALAHILAFENPSANGRYLMVESVAHYSEIVKILRELYPTLKLPEKCADDKPFTPTYQVNVERAKKLGIEFIPLAESVKETAESLKEKKFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39470" stop="39664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRSFTEMLSLIVNESGNCREHAYVHLHVLLKPFVLCRFVIRNFNGVVKFKHSVDVVESKIRSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="42133" PGL_stop="45702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42133" e_stop="42231"/>
            <exon e_start="43372" e_stop="43541"/>
            <exon e_start="44578" e_stop="44769"/>
            <exon e_start="45555" e_stop="45702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.385" acc_prob="0.999" e_score="0.949"/>
          <exon-intron don_prob="0.892" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="42133" e_stop="42231" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.385" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42232" i_stop="43371" i_length="1140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43372" e_stop="43541" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="0.921">
            <gDNA_intron_boundary i_start="43542" i_stop="44577" i_length="1036"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44578" e_stop="44769" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="44770" i_stop="45554" i_length="785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45555" e_stop="45702" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42133" stop="42231"/>
              <exon start="43372" stop="43541"/>
              <exon start="44578" stop="44769"/>
              <exon start="45555" stop="45702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42133" stop="42231"/>
              <exon start="43372" stop="43541"/>
              <exon start="44578" stop="44769"/>
              <exon start="45555" stop="45627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42133" stop="42231"/>
              <exon start="43372" stop="43541"/>
              <exon start="44578" stop="44769"/>
              <exon start="45555" stop="45608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42133" stop="42231"/>
              <exon start="43372" stop="43541"/>
              <exon start="44578" stop="44712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTGTGTGTAACAGGAGCTTCTGGTTTCATAGCTTCATGGCTAGTCAAATTATTGCTAAATCGTGGTTATACTGTGAAGGCTTCTGTTCGTGATCCAA : ATGATCCCAAGAAAACGCAGCACTTGCTTTCTCTTGGTGGGGCCAAGGAGAGGCTTCACTTGTTCAAAGCAAACCTATTAGAAGAAGGTTCATTTGATGCTGTAGTTGATGGATGTGAAGGTGTATTCCATACAGCGTCTCCTTTTTACTACTCTGTTACAGACCCACAG : GCTGAATTACTTGATCCTGCTGTTAAGGGAACACTCAATCTTCTCGGGTCATGTGCCAAAGCACCATCAGTAAAACGAGTTGTTTTAACGTCTTCCATAGCTGCAGTTGCTTACAGTGGTCAGCCTCGGACACCTGAGGTTGTGGTTGATGAGAGCTGGTGGACCAGTCCAGACTACTGCAAAGAAAAACAG : CTCTGGTATGTCCTCTCAAAGACATTGGCTGAGGATGCTGCGTGGAAGTTTGTGAAGGAGAAAGGCATTGATATGGTTGTAGTAAACCCTGCTATGGTTATTGGTCCTCTGTTACAGCCTACACTTAATACCAGTTCTGCTGCAGTCT</gDNA_template>
            <first_frame> *  C  V  *  Q  E  L  L  V  S  *  L  H  G  *  S  N  Y  C  *  I  V  V  I  L  *  R  L  L  F  V  I  Q  :  M  I  P  R  K  R  S  T  C  F  L  L  V  G  P  R  R  G  F  T  C  S  K  Q  T  Y  *  K  K  V  H  L  M  L  *  L  M  D  V  K  V  Y  S  I  Q  R  L  L  F  T  T  L  L  Q  T  H  R :   L  N  Y  L  I  L  L  L  R  E  H  S  I  F  S  G  H  V  P  K  H  H  Q  *  N  E  L  F  *  R  L  P  *  L  Q  L  L  T  V  V  S  L  G  H  L  R  L  W  L  M  R  A  G  G  P  V  Q  T  T  A  K  K  N  S :   S  G  M  S  S  Q  R  H  W  L  R  M  L  R  G  S  L  *  R  R  K  A  L  I  W  L  *  *  T  L  L  W  L  L  V  L  C  Y  S  L  H  L  I  P  V  L  L  Q  S </first_frame>
            <second_frame>  S  V  C  N  R  S  F  W  F  H  S  F  M  A  S  Q  I  I  A  K  S  W  L  Y  C  E  G  F  C  S  *  S  K :   *  S  Q  E  N  A  A  L  A  F  S  W  W  G  Q  G  E  A  S  L  V  Q  S  K  P  I  R  R  R  F  I  *  C  C  S  *  W  M  *  R  C  I  P  Y  S  V  S  F  L  L  L  C  Y  R  P  T   : G  *  I  T  *  S  C  C  *  G  N  T  Q  S  S  R  V  M  C  Q  S  T  I  S  K  T  S  C  F  N  V  F  H  S  C  S  C  L  Q  W  S  A  S  D  T  *  G  C  G  *  *  E  L  V  D  Q  S  R  L  L  Q  R  K  T   : A  L  V  C  P  L  K  D  I  G  *  G  C  C  V  E  V  C  E  G  E  R  H  *  Y  G  C  S  K  P  C  Y  G  Y  W  S  S  V  T  A  Y  T  *  Y  Q  F  C  C  S   </second_frame>
            <third_frame>   V  C  V  T  G  A  S  G  F  I  A  S  W  L  V  K  L  L  L  N  R  G  Y  T  V  K  A  S  V  R  D  P   : N  D  P  K  K  T  Q  H  L  L  S  L  G  G  A  K  E  R  L  H  L  F  K  A  N  L  L  E  E  G  S  F  D  A  V  V  D  G  C  E  G  V  F  H  T  A  S  P  F  Y  Y  S  V  T  D  P  Q  :  A  E  L  L  D  P  A  V  K  G  T  L  N  L  L  G  S  C  A  K  A  P  S  V  K  R  V  V  L  T  S  S  I  A  A  V  A  Y  S  G  Q  P  R  T  P  E  V  V  V  D  E  S  W  W  T  S  P  D  Y  C  K  E  K  Q  :  L  W  Y  V  L  S  K  T  L  A  E  D  A  A  W  K  F  V  K  E  K  G  I  D  M  V  V  V  N  P  A  M  V  I  G  P  L  L  Q  P  T  L  N  T  S  S  A  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42135" stop="42231"/>
                    <exon start="43372" stop="43541"/>
                    <exon start="44578" stop="44769"/>
                    <exon start="45555" stop="45701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCVTGASGFIASWLVKLLLNRGYTVKASVRDPNDPKKTQHLLSLGGAKERLHLFKANLLEEGSFDAVVDGCEGVFHTASPFYYSVTDPQAELLDPAVKGTLNLLGSCAKAPSVKRVVLTSSIAAVAYSGQPRTPEVVVDESWWTSPDYCKEKQLWYVLSKTLAEDAAWKFVKEKGIDMVVVNPAMVIGPLLQPTLNTSSAAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47608" PGL_stop="48011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47608" e_stop="48011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="47608" e_stop="48011" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47608" stop="48011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47663" stop="48011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTACTACCCTTGAAGAAAGCATCAAAGAAACTGTTGAAAGTTTGAAGGAAAAGAAGTTTTTTGGAGGTTCATCTTCTATGTAAAAGGCTTCTCAAAGCTTTTATGGTTTTGTTGAACAATACTACCCACCCCACCCTACCCTACACACTTTTTTTTTTTACTTCTTTTAGCTAATTATAGAATCGAGAAGTCGAATGGTATATCCGTTAATAAATTTCGATCAGATGAGGTTGAAATTTGTTCTATATCTAGAGATTTTTACAGACTGGTTTGATAGAAGAAATTAGAACACTATTGTTGTGTTTTGTTGAGTTTGGTTTGTAGGAGAAAACCAAATGGATTTATTGATATTTGAAGATTTGTGTTGAATCCAAAATTTTCAGGCTCAATATCTAATTAATA</gDNA_template>
            <first_frame> V  Y  Y  P  *  R  K  H  Q  R  N  C  *  K  F  E  G  K  E  V  F  W  R  F  I  F  Y  V  K  G  F  S  K  L  L  W  F  C  *  T  I  L  P  T  P  P  Y  P  T  H  F  F  F  L  L  L  L  A  N  Y  R  I  E  K  S  N  G  I  S  V  N  K  F  R  S  D  E  V  E  I  C  S  I  S  R  D  F  Y  R  L  V  *  *  K  K  L  E  H  Y  C  C  V  L  L  S  L  V  C  R  R  K  P  N  G  F  I  D  I  *  R  F  V  L  N  P  K  F  S  G  S  I  S  N  *   </first_frame>
            <second_frame>  F  T  T  L  E  E  S  I  K  E  T  V  E  S  L  K  E  K  K  F  F  G  G  S  S  S  M  *  K  A  S  Q  S  F  Y  G  F  V  E  Q  Y  Y  P  P  H  P  T  L  H  T  F  F  F  Y  F  F  *  L  I  I  E  S  R  S  R  M  V  Y  P  L  I  N  F  D  Q  M  R  L  K  F  V  L  Y  L  E  I  F  T  D  W  F  D  R  R  N  *  N  T  I  V  V  F  C  *  V  W  F  V  G  E  N  Q  M  D  L  L  I  F  E  D  L  C  *  I  Q  N  F  Q  A  Q  Y  L  I  N  </second_frame>
            <third_frame>   L  L  P  L  K  K  A  S  K  K  L  L  K  V  *  R  K  R  S  F  L  E  V  H  L  L  C  K  R  L  L  K  A  F  M  V  L  L  N  N  T  T  H  P  T  L  P  Y  T  L  F  F  F  T  S  F  S  *  L  *  N  R  E  V  E  W  Y  I  R  *  *  I  S  I  R  *  G  *  N  L  F  Y  I  *  R  F  L  Q  T  G  L  I  E  E  I  R  T  L  L  L  C  F  V  E  F  G  L  *  E  K  T  K  W  I  Y  *  Y  L  K  I  C  V  E  S  K  I  F  R  L  N  I  *  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0095M15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="70593" PGL_stop="71144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70593" e_stop="71144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="70593" e_stop="71144" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70593" stop="71144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTTTAGCATTGTGGCAAGAGTCATTCTATTTCCATGCATAGTTGTATTTCTAATGATAGAGTTACGAAGAAGGCATTTGTCGATTTATGATGCAATTGAAAGTTTCCTGCACGGTGAGAACAATTTCACGCCCATTAGATATTCCAACTCCAACATAAGAAAGATGACTAGAAACTTTAAAGAGAAACTAGGCCAAGGAGGTTATGGTTCAGTATATAAAGGCAAGCTTCAAAGTGGTCCTAATGTAGCAGTGAAGATCTTGAGCAAGCCCAAAGCCGATGGACAAGACTTCATCAACGAGGTTGCTACAATCGGGAGGATTCATCATGTTAACATAGTACAACTTATTGGCTATTGTGCTGAGAGATGTAAGCGTGCTCTCGTATATGACTTCATGCCTAAAGGATCACTTGAAAAGTACATCACACCTCGAGAAGGAGGAGCTGAACTATTAAGTTGGAAAAGAAAGTTTGAAATTGCTCTTGGAGTTGCTCGAGGTATTGAATACTTGCATCGAGGTTGTGACATTCAGATTCTACATTTTGACAT</gDNA_template>
            <first_frame> R  V  *  H  C  G  K  S  H  S  I  S  M  H  S  C  I  S  N  D  R  V  T  K  K  A  F  V  D  L  *  C  N  *  K  F  P  A  R  *  E  Q  F  H  A  H  *  I  F  Q  L  Q  H  K  K  D  D  *  K  L  *  R  E  T  R  P  R  R  L  W  F  S  I  *  R  Q  A  S  K  W  S  *  C  S  S  E  D  L  E  Q  A  Q  S  R  W  T  R  L  H  Q  R  G  C  Y  N  R  E  D  S  S  C  *  H  S  T  T  Y  W  L  L  C  *  E  M  *  A  C  S  R  I  *  L  H  A  *  R  I  T  *  K  V  H  H  T  S  R  R  R  S  *  T  I  K  L  E  K  K  V  *  N  C  S  W  S  C  S  R  Y  *  I  L  A  S  R  L  *  H  S  D  S  T  F  *  H </first_frame>
            <second_frame>  G  F  S  I  V  A  R  V  I  L  F  P  C  I  V  V  F  L  M  I  E  L  R  R  R  H  L  S  I  Y  D  A  I  E  S  F  L  H  G  E  N  N  F  T  P  I  R  Y  S  N  S  N  I  R  K  M  T  R  N  F  K  E  K  L  G  Q  G  G  Y  G  S  V  Y  K  G  K  L  Q  S  G  P  N  V  A  V  K  I  L  S  K  P  K  A  D  G  Q  D  F  I  N  E  V  A  T  I  G  R  I  H  H  V  N  I  V  Q  L  I  G  Y  C  A  E  R  C  K  R  A  L  V  Y  D  F  M  P  K  G  S  L  E  K  Y  I  T  P  R  E  G  G  A  E  L  L  S  W  K  R  K  F  E  I  A  L  G  V  A  R  G  I  E  Y  L  H  R  G  C  D  I  Q  I  L  H  F  D   </second_frame>
            <third_frame>   G  L  A  L  W  Q  E  S  F  Y  F  H  A  *  L  Y  F  *  *  *  S  Y  E  E  G  I  C  R  F  M  M  Q  L  K  V  S  C  T  V  R  T  I  S  R  P  L  D  I  P  T  P  T  *  E  R  *  L  E  T  L  K  R  N  *  A  K  E  V  M  V  Q  Y  I  K  A  S  F  K  V  V  L  M  *  Q  *  R  S  *  A  S  P  K  P  M  D  K  T  S  S  T  R  L  L  Q  S  G  G  F  I  M  L  T  *  Y  N  L  L  A  I  V  L  R  D  V  S  V  L  S  Y  M  T  S  C  L  K  D  H  L  K  S  T  S  H  L  E  K  E  E  L  N  Y  *  V  G  K  E  S  L  K  L  L  L  E  L  L  E  V  L  N  T  C  I  E  V  V  T  F  R  F  Y  I  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70594" stop="71142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSIVARVILFPCIVVFLMIELRRRHLSIYDAIESFLHGENNFTPIRYSNSNIRKMTRNFKEKLGQGGYGSVYKGKLQSGPNVAVKILSKPKADGQDFINEVATIGRIHHVNIVQLIGYCAERCKRALVYDFMPKGSLEKYITPREGGAELLSWKRKFEIALGVARGIEYLHRGCDIQILHFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="71173" PGL_stop="71767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71173" e_stop="71767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="71173" e_stop="71767" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71173" stop="71767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415768" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71207" stop="71767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412493" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71225" stop="71767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411585" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCATTCCGAAACTATCTGATTTTGGTCTTGCAAAATCATACCCGACGGATAAGAGCATTGTTACTCTAACAGCAGTCAGGGGAACAATTGGTTATGTAGCTCCAGAGTTGATCAACAGAAGCATTGGTCCAATATCTTGTAAGGCAGATGTTTATAGCTTTGGAATGTTACTCATTGATATCGTAGGCTTGAAAACAAACTCGGTAGCCAGAGAGGATATGTCAAGCCAATACTTCCCACATTGGATATATGATCAGCTCGACAAGGGAAAGGAGATTGAAGTACTAGACGAGACACATGAAGACGTAAAGAAGCTGACTTTAGTTGCTTTGTGGTGCATACAAATGAATCCACTCGATCATCCTTCAATGACTAGAGTAGTGGAAATGCTTGAAGGCGATTTACAAGCATTGCAAACGCCTCCTAGGTCCTCTGAATCGCGTGAACCATGTTCGTTGGAGTTCAATTTAACTAGTTCTTCAATGAACTCAACTGAGTCTGTGAAGTTGCTAGAGAGTTGTTCTGATTCTGCAATAATAGATGTAATTGTTGTTTGACATCACACGTTATGTACCTAATTCATGTTGTTTT</gDNA_template>
            <first_frame> N  F  I  P  K  L  S  D  F  G  L  A  K  S  Y  P  T  D  K  S  I  V  T  L  T  A  V  R  G  T  I  G  Y  V  A  P  E  L  I  N  R  S  I  G  P  I  S  C  K  A  D  V  Y  S  F  G  M  L  L  I  D  I  V  G  L  K  T  N  S  V  A  R  E  D  M  S  S  Q  Y  F  P  H  W  I  Y  D  Q  L  D  K  G  K  E  I  E  V  L  D  E  T  H  E  D  V  K  K  L  T  L  V  A  L  W  C  I  Q  M  N  P  L  D  H  P  S  M  T  R  V  V  E  M  L  E  G  D  L  Q  A  L  Q  T  P  P  R  S  S  E  S  R  E  P  C  S  L  E  F  N  L  T  S  S  S  M  N  S  T  E  S  V  K  L  L  E  S  C  S  D  S  A  I  I  D  V  I  V  V  *  H  H  T  L  C  T  *  F  M  L  F  </first_frame>
            <second_frame>  I  S  F  R  N  Y  L  I  L  V  L  Q  N  H  T  R  R  I  R  A  L  L  L  *  Q  Q  S  G  E  Q  L  V  M  *  L  Q  S  *  S  T  E  A  L  V  Q  Y  L  V  R  Q  M  F  I  A  L  E  C  Y  S  L  I  S  *  A  *  K  Q  T  R  *  P  E  R  I  C  Q  A  N  T  S  H  I  G  Y  M  I  S  S  T  R  E  R  R  L  K  Y  *  T  R  H  M  K  T  *  R  S  *  L  *  L  L  C  G  A  Y  K  *  I  H  S  I  I  L  Q  *  L  E  *  W  K  C  L  K  A  I  Y  K  H  C  K  R  L  L  G  P  L  N  R  V  N  H  V  R  W  S  S  I  *  L  V  L  Q  *  T  Q  L  S  L  *  S  C  *  R  V  V  L  I  L  Q  *  *  M  *  L  L  F  D  I  T  R  Y  V  P  N  S  C  C  F </second_frame>
            <third_frame>   F  H  S  E  T  I  *  F  W  S  C  K  I  I  P  D  G  *  E  H  C  Y  S  N  S  S  Q  G  N  N  W  L  C  S  S  R  V  D  Q  Q  K  H  W  S  N  I  L  *  G  R  C  L  *  L  W  N  V  T  H  *  Y  R  R  L  E  N  K  L  G  S  Q  R  G  Y  V  K  P  I  L  P  T  L  D  I  *  S  A  R  Q  G  K  G  D  *  S  T  R  R  D  T  *  R  R  K  E  A  D  F  S  C  F  V  V  H  T  N  E  S  T  R  S  S  F  N  D  *  S  S  G  N  A  *  R  R  F  T  S  I  A  N  A  S  *  V  L  *  I  A  *  T  M  F  V  G  V  Q  F  N  *  F  F  N  E  L  N  *  V  C  E  V  A  R  E  L  F  *  F  C  N  N  R  C  N  C  C  L  T  S  H  V  M  Y  L  I  H  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71173" stop="71733"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFIPKLSDFGLAKSYPTDKSIVTLTAVRGTIGYVAPELINRSIGPISCKADVYSFGMLLIDIVGLKTNSVAREDMSSQYFPHWIYDQLDKGKEIEVLDETHEDVKKLTLVALWCIQMNPLDHPSMTRVVEMLEGDLQALQTPPRSSESREPCSLEFNLTSSSMNSTESVKLLESCSDSAIIDVIVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="75983" PGL_stop="76476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75983" e_stop="76476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75983" e_stop="76476" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75983" stop="76476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75984" stop="76476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75984" stop="76476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAGTCACAAAACTAACACCAATGGCTTCTTTACTAATGTCATCTTCATTACTAGCCCATATCGAAGGATCTAACTACAGGAGAACCAGGAACGAAGGGTTTTCCTCCCTCTCCGCGCATTCAAATAGGAGAAGAGTGCTAAAAGTTAATGCATTTACTAAGGATGAAAAAATTGTGAAAAAAAAGGAGGAAAAAAAGAGCATTGGATCAAGAAGGGAATGGGCTTTAGCCATAATGGCTATAGTAGCTACAAGTTCATTTGCAAGTGTTGTTATGGCTGAGGAACCAAAGGCAGGGACACTTGAGGCAAAGAAAAAGTATGCACCTATTTGTGTCACAATGCCAACTGCTAGAATATGTCACAAGTAAAATTTAGACGCGGAATCGGGATTTAAGTTTAATAGGTCGTAACTTTTAAGATTTTTAATTATTAGTGAAGTTGTTGTAATGTTAAAATTATAGGTTCAGGTCTAATATAGTCTGTGTTGAAA</gDNA_template>
            <first_frame> K  I  V  T  K  L  T  P  M  A  S  L  L  M  S  S  S  L  L  A  H  I  E  G  S  N  Y  R  R  T  R  N  E  G  F  S  S  L  S  A  H  S  N  R  R  R  V  L  K  V  N  A  F  T  K  D  E  K  I  V  K  K  K  E  E  K  K  S  I  G  S  R  R  E  W  A  L  A  I  M  A  I  V  A  T  S  S  F  A  S  V  V  M  A  E  E  P  K  A  G  T  L  E  A  K  K  K  Y  A  P  I  C  V  T  M  P  T  A  R  I  C  H  K  *  N  L  D  A  E  S  G  F  K  F  N  R  S  *  L  L  R  F  L  I  I  S  E  V  V  V  M  L  K  L  *  V  Q  V  *  Y  S  L  C  *   </first_frame>
            <second_frame>  K  *  S  Q  N  *  H  Q  W  L  L  Y  *  C  H  L  H  Y  *  P  I  S  K  D  L  T  T  G  E  P  G  T  K  G  F  P  P  S  P  R  I  Q  I  G  E  E  C  *  K  L  M  H  L  L  R  M  K  K  L  *  K  K  R  R  K  K  R  A  L  D  Q  E  G  N  G  L  *  P  *  W  L  *  *  L  Q  V  H  L  Q  V  L  L  W  L  R  N  Q  R  Q  G  H  L  R  Q  R  K  S  M  H  L  F  V  S  Q  C  Q  L  L  E  Y  V  T  S  K  I  *  T  R  N  R  D  L  S  L  I  G  R  N  F  *  D  F  *  L  L  V  K  L  L  *  C  *  N  Y  R  F  R  S  N  I  V  C  V  E  </second_frame>
            <third_frame>   N  S  H  K  T  N  T  N  G  F  F  T  N  V  I  F  I  T  S  P  Y  R  R  I  *  L  Q  E  N  Q  E  R  R  V  F  L  P  L  R  A  F  K  *  E  K  S  A  K  S  *  C  I  Y  *  G  *  K  N  C  E  K  K  G  G  K  K  E  H  W  I  K  K  G  M  G  F  S  H  N  G  Y  S  S  Y  K  F  I  C  K  C  C  Y  G  *  G  T  K  G  R  D  T  *  G  K  E  K  V  C  T  Y  L  C  H  N  A  N  C  *  N  M  S  Q  V  K  F  R  R  G  I  G  I  *  V  *  *  V  V  T  F  K  I  F  N  Y  *  *  S  C  C  N  V  K  I  I  G  S  G  L  I  *  S  V  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0095M15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75983" stop="76354"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIVTKLTPMASLLMSSSLLAHIEGSNYRRTRNEGFSSLSAHSNRRRVLKVNAFTKDEKIVKKKEEKKSIGSRREWALAIMAIVATSSFASVVMAEEPKAGTLEAKKKYAPICVTMPTARICHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 212 chains have been computed
$ 
$ memory statistics:
$ 254776 bytes spliced alignments in total
$ 97 spliced alignments have been stored
$ 2626 bytes was the average size of a spliced alignment
$ 18504 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1850 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 263 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:44:02
-->
