<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:34:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565787" ref_strand="+" ref_description="SGN-U565787 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|217074926|gb|ACJ85823.1| (e_value=4e-33) unknown; (*ATH) AT3G05050.1 (e_value=7e-38) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr3:1408619-1411807 REVERSE | Aliases: T12H1.1, T12H1_1; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=2e-39) Putative serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610; ">
      <seq>gggggattgattcttttatgattatactcttttcttgtcttacagcaaagaaacgttgaagactacagacaccacataaaactctctctctcttatttcctatttttggctcagatttgatcaacccagcaagtgttgtagattctgagttgattgtggaaattggttggttaatccatgagaatgttgagttatgaagtgtagacctgaaagatggggtgtgttttgggtcgggaagcttcatcaggcttagtacacaatggcagagaggagaaaagggaaggtgcacattatgagaagaagagtcagagcattagcgctgaatccactgaaacttttgaggtcaagggggctgaaaatgtaactgttgacactgaagttgtggaagccgatgaaggtgatgaaactaagaaggatgacaagacggagcatgacggaaaatctaggaaagaaaagagaaggtcgaagcctgatccaagattaagtaatccacctaagcataaacatggggagcaggttgctgctggatggccttcctggctctctgctcatgttggggaagcaattgatggttggctcccacgacgcgctgacacttttgagaaaattgataagattggccaangggacatacagtaatgtctacaaggcgagagatactgttactggtaaaattgttgctctaaagaaagtgcgttttgacaatctagaacctgagagtgtgagattcatggctagagaaattataattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="7758" stop="9860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8054" g_stop="8185" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8186" i_stop="8826" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8827" g_stop="9309" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="615" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9310" i_stop="9421" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9422" g_stop="9560" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="755" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U565787" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8054" e_stop="8185"/>
          <exon e_start="8827" e_stop="9309"/>
          <exon e_start="9422" e_stop="9560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGATTGATTCTTTTATGATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAAACTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAAGTAATTTCCACTTACCCCTTTTTTTTTTGATGCTTTTCTTGGACTTTTACTAGAATAAAGACTGTCATTTTCATGTTTGTGGACGTGTTTGTAGTTTTTGTTAATTTGGGTATTAGGGTTTTTATCGTTTTGTAGATGTATCTTTGTTGCTACAGTGTGGGTCTGTCTTGGTGGGTTTTATTTTGGGTCAGATGAAAAGATTGATTTGGGTTTGACTGTGAATCTGAAACTGGGTGACAAGTGCGACCAAGTAAAAGGGTTGTTTCTGTTTTTGTTTTGGAGTTGTAATTGATGGTTGATGTGTGTTAGTTTCTGAGAAGAAGGGGGTTACTGTTATGATTGTTTGTTGACTATGTTTGAATCTGTGATAATTTTGTCTAATTGACCACCCCTTTTTAAAAAAATTACCAAACTTTGCCCAGTGTTGGAGTAATTGTTTCTTTGGATTCTTCTTGTTTATGGGGCGGGCAAGGTTGGGGGGCTTTGTCATGGGTCCTTAAGATTTGATGCTAAGTAGGGAACTCAACTATTGCCAATTTAATGATTTACTGTTTTTTTTCCTTTTCTCTAGCCTATTTAATGATTTACTCTTTTTTCTTGCTTGGCCAATTTAATTATGGACTATCATATTGCTTTTGTAGGTGTTGTAGATTCTGAGTTGATTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGATAAGGTAGCTTTTAAGATTTCTTTTTGTTTTCCTTGATACATTTCAAGTTCTCTCGAGTCCTGAATTAAACTTTTGCTTTTGATGATTAACAATCTGCCTCTGTTTTTCTTAATAGATTGGCCAA-GGGACATACAGTAATGTCTACAAGGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAATCTAGAACCTGAGAGTGTGAGATTCATGGCTAGAGAAATTATAATTTTGC</genome_strand>
        <mrna_strand>GGGGGATTGATTCTTTTATGATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAAACTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAGATTCTGAGTTGATTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGATAAG................................................................................................................ATTGGCCAANGGGACATACAGTAATGTCTACAAGGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAATCTAGAACCTGAGAGTGTGAGATTCATGGCTAGAGAAATTATAATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567609" ref_strand="+" ref_description="SGN-U567609 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351981|emb|CAO42971.1| (e_value=1e-90) unnamed; (*ATH) AT1G54610.1 (e_value=6e-85) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr1:20397429-20400853 REVERSE | Aliases: T22H22.5, T22H22_5; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=5e-84) Putative serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610; ">
      <seq>ggtcggatcttctcctcgacaattctggcattctcagaattgctgactttggactggctactattttcgatccttctcataagcatcaaatgactagtcgagtggttactctctggtatagaccaccagagctgcttctaggtgctactgattatggcgtaggtattgatttatggagtgcacgttgcatcttagctgagttattggctggaaaacccattatgcctggtcggactgaggtagaacaattgcataatatatataaactctgtggttcaccatcagaagagtactggaagaagtccaagttgccgaatgcaacacttttcaagcctcgagaaccctacagacgatgcattaaagagactcttaaagattttcctcagtcttcacttcccctgattgatacattacttgcaattgatcccgcagaacgcaagacggctactgatgcattacgaagtgaatttttcaatacagagccatatgcctgtgatccctctagtcttccaaaatatcctccaaccaaggaaatggatgccaaacggcgggatgatgaagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="9599" stop="13518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9899" g_stop="10137" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10138" i_stop="10854" i_length="717">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.130" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10855" g_stop="11082" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="467" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11083" i_stop="13120" i_length="2038">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13121" g_stop="13218" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="565" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U567609" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9899" e_stop="10137"/>
          <exon e_start="10855" e_stop="11082"/>
          <exon e_start="13121" e_stop="13218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAATCTTCTTCTTGACAATTCTGGCATTCTCAGAATTGCTGACTTTGGACTGGCTACTATTTTCGATCCTTCTCATAAGCATCAAATGACTAGTCGAGTGGTTACTCTCTGGTATAGACCACCAGAGCTGCTTCTAGGTGCTACTGATTATGGTGTAGGTATTGATTTATGGAGTGCAGGTTGCATCTTAGCTGAGTTATTGGCTGGAAAACCCATTATGCCTGGTCGGACTGAGGTAATCGCCGTAGTTTGTTATAAATTTTCTGTAGTAATATGTTATAAATTGCTGTAGTTTTGCAAGGGTTTCTTGTAATAGACCCAAAGCGACTTATTACTATTTACAAGGCCCAGTTTATCAACATGAGAAATTCAGCAGAGTCCATTAGGATAATCTATATGCTCAGGGAAAGTGAACTCTCTATAATTGTCAGTTTCAAAAATGAACTCTCTTTAATTGGTTACTATCTTTGGAATGATGGTCTCAATGATAAGAGTATCTGAATTCCGACCCATGGATGATTAGGCTGTGTGCCATTTCTACCAGTATTGCCAATTTTGGAAATTGAATAAAAGCGATCAATTCTGTGAGGAACAATGGTTTTTACTAGCTCTTATTGGATAACAACCTAACAACATTTATAAGGGTGATGTTTGCATACTACGTCTCTAAAATTGAAAGAAAACTGTGGACAGTATGTGTTTTTATCTTTAAATTGATTCTGTTTCTTGCCAGTAGCTTTAGACTGTCTCTTGTATTTTTCTGGAATCAGGAGTACTCTATCTGGGAGATCGTTTAATTAGCATTTATTTTGATACTTCCAAGGCTACAAACTATAGAATTTCTGTGACAAGTATCCCAACTGACTTTAAGCTTGTATGGAATGTGTTAATACACAGGAATGTTTTTATTTCCCTGCATGAGTTATTAACAGCAATTTTTTCTGTCACTAAGGTAGAACAATTGCATAAGATATATAAACTCTGTGGTTCACCATCAGAGGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAGGAGACTTTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCCCGCAGAACGCAAGACGGCTACTGATGCATTACGAAGTGAAGTGAGTAGTTTCTGTGTCCAAATTGTCTTGTTCTAATTAGTAGTTTTGTTCTCCTTTCACTGCCAACCATCTTTTGAAGAAAGCTTTTTTTTTTTTTTAAAGAATTATAATATCTTGGGGTCATTAACTCCTTTTGCTGGCACAGATTAGTAAGGTTAAGAGCCTAATTACATGATAGATACTAAAATAGAGGTATTTGCTATGCTTTCTCTAGTGGTAGAAGAAATTTCCACAAGTCTTACCAGGTAGGGCTGTACCAAAGTTATGCTCTCTGTGAGATATAAACTAGTTTAAATGGGTTTGGGTACTATACCTGTGACTTTTATGTTAGGAAGCTCTGTAGCTTGAAGGTATTGGTGTAAATGAGAAATTGCCAATAGCCTCACTTTTTTCTGATGACCGTGGTGTCCAGGCCAGCTTTCGCTCACCTCGACTAATTCCACGAGACACCTGCCACCTCCCATTTGTTATTACAAAATTCTTGCCATATAATTTTGGTTTGGTAATAAGTCAGTTCTGCAGTCGTTCGGTACTTCTAGTACAGCCCTTGGCAGATTTATTTGCTACTTGTGATGTTTTAAGTTTGGATTCTCTGGTGAAAACTTTTAGCAAGTGATCAGTCGTTTGGAACTTTTTAGTGTTTAGTTTGCTATTGGGTTATTTTTGTCACTTGTTTTTGAGTTCAGGTTCGCTGGTGAAAAGTAAAATACGGTATTAAATGTCTGCAGTGAGTAATTTACACTTCGCTTATGCAGACTATTGACTATTCAAAGAAAAGAATAACCATCAGTACTCCCTCTATTAAAAAATGTTCACTCTTTGCTTGCAAATATCCATAGCTTAGTGAACCACTGACCTTTTACAATGTATTTTATTTTGAAACTGGTAACATTGAGATATGAGGTAAATTATAATTTATACTACTGCTCATTTAGGTTGTGAATATCTATTTAGTGTTAAAAGATAATTGTTGTCATCAAGTTTGTAGCCTGTTTGGCCAAGCTTTTGAAACTAAAAGCACTTGTATCAAAATACACAGTAGTTTGTTCTGGAGAGTTGAGGTGTTTGGAATAGTTAGTATAAATTGCCAAGCTTCTTTAAGCCTCAGGCTGGAGCTTAGTTAATGGTTGGAGCTTCGTGAGACCTAGTTTTAATAAGATGGGTAACATCAGACCAAACACTTGACATAAAACAAATTGCTCAATTTCAAGCTGTATAGTGGACAATTTGACCCTTCTCTGAAAAATAGATTATTTTCTTGATCAAATAAATGTAATCTCATTCATAAACATGGCCCAAAACTTGGCTATGTACAAAGGTTGAAGGTTATACCACAAAAGGTAAAGAATCTACAAAAAGAAATGATTCTCTACAAACATCAAATCTTCTATACAGTTGGAACTTGTATGGGTGCACCAAAAGAAAACAAGAGATTGGACGCTACTTCTCAACAGAGAAAAACTTGACTCTACCCCTTCAAAAGCTCCCCTATTTATCTCTCCACAGTCCACACCACCCACATTAATGCTAGTAAAACTACATTCCATGCTCTACATCTTCTCCTTTTCTCCCACTCTTTCAACTGAACATCAGTTCTTTCCATTTAATTGGTCCCAATGGGCTCTTTGCTCCAAATTGATCAAATCAACCCTTAATATGCAAAAAGAGCCAAACAAAATTTGGATGGAGTACAATTTGAACTGTGTTTGATAATCCTTAATGTTCACGGATAAAGCAAAATATATTTGTAATTTCAGTTTTATTGACATAGAGGAGTAGGACAAGTAAGACATCAAATAGTTTAGCTTGAAGGAACAAAAGAAATAATAGTTATGAGCTATTTAACTACTTTTCCCACTGTCATTCTTTCTTGGTGCAGCACTACGTCATTCTTTTTTCTGGTGTTCTTGTATAGCATGTGTTATTGTGATATACCGTGTCTTCTCTTAACCTGAACACATCATTTTAAATAACGTGTTTCACTTGTATTCTTATGCTGTTGCCTTCTTCTATGGTTAATAAAGTTCAATTTCTGCAGTTTTTCAATACAGAGCCATATGCCTGTGATCCCTCTAGTCTTCCAAAATATCCTCCAACCAAGGAAATGGATGCCAAACGGCGGGATGATGAAGCTAG</genome_strand>
        <mrna_strand>GGTCGGATCTTCTCCTCGACAATTCTGGCATTCTCAGAATTGCTGACTTTGGACTGGCTACTATTTTCGATCCTTCTCATAAGCATCAAATGACTAGTCGAGTGGTTACTCTCTGGTATAGACCACCAGAGCTGCTTCTAGGTGCTACTGATTATGGCGTAGGTATTGATTTATGGAGTGCACGTTGCATCTTAGCTGAGTTATTGGCTGGAAAACCCATTATGCCTGGTCGGACTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACAATTGCATAATATATATAAACTCTGTGGTTCACCATCAGAAGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAAGAGACTCTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCCCGCAGAACGCAAGACGGCTACTGATGCATTACGAAGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAATACAGAGCCATATGCCTGTGATCCCTCTAGTCTTCCAAAATATCCTCCAACCAAGGAAATGGATGCCAAACGGCGGGATGATGAAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576500" ref_strand="+" ref_description="SGN-U576500 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147783622|emb|CAN68143.1| (e_value=2e-86) hypothetical; (*ATH) AT4G15770.1 (e_value=4e-42) |; (*SWP) sp|Q9WV50|NIP7_RAT (e_value=5e-59) 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7; ">
      <seq>ggtancaactcaattatgatatcactaattgtaattgtataacagtatgtagaatgtagagttaaacacaattncattacacaaattaaaaatcccaagaaaaaccctaaattncaagaaacacagtagcaatcactcaaaaatttcaattaccagtaattaaagatcatcttccatcctcaaatactctccaatatcagcttgatgaagcactacaattccattcggatccattttccggcaatcctgagtactcttcgctgcaaccccaaatcccaatggcacatccgacatcgaaaacacaaccacaccatcatgatcactaatactctctgtaatccttccaactccacctttcaatacattatttccataaagaaaactcatctcagacgtgggtttcagccacactttgtgtttcgcgtgtgcagctaagagacccaaacattgaaccgtgagatgaaatttacctcccttggtgaatttccctaactgggttcccagcgaaactaagttatctcgctttacgttggttgctcgcttgaccagagattctgatacgtagtaaactctgtttctctggagacgaaagcagtaacggccgggagtgttgtcggtaccttcgtgagatgggttttccactatgttcttcagattgtttccgacgaatttgtgtagcttttcgaacacctgtgttgtttcttgctcatctagcggtcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="24269" stop="22948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23969" g_stop="23248" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-U576500" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23969" e_stop="23248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACAACTCAATTATGATATCACTAATTGTAATTGTATAACAGTATGTAGAATGTAGAGTTAAACACAATTACATTACACAAATTAAAAATCCCAAGAAAAACCCTAAATTCCAAGAAACACAGTAGCAATCACTCAAAAATTTCAATTACCAGTAATTAAAGATCATCTTCCATCCTCAAATACTCTCCAATATCAGCTTGATGAAGCACTACAATTCCATTCGGATCCATTTTCCGGCAATCCTGAGTACTCTTCGCTGCAACCCCAAATCCCAATGGCACATCCGACATCGAAAACACAACCACACCATCATGATCACTAATACTCTCTGTAATCCTTCCAACTCCACCTTTCAATACATTATTTCCATAAAGAAAACTCATCTCAGACGTGGGTTTCAGCCACACTTTGTGTTTCGCGTGTGCAGCTAAGAGACCCAAGCATTGAACCGTGAGATGAAATTTACCTCCCTTGGTGAATTTCCCTAACTGGGTTCCCAGCGAAACTAAGTTATCTCGCTTTACGTTGGTTGCTCGCTTGACCAGAGATTCTGATACGTAGTAAACTCTGTTTCTCTGGAGACGAAAGCAGTAACGGCCGGGAGTGTTGTCGGTACCTTCGTGAGATGGGTTTTCCACTATGTTCTTCAGATTGTTTCCGACGAATTTGTGTAGCTTTTCGAACACCTGTGTTGTTTCTTGCTCATCTAGCGGTCGCA</genome_strand>
        <mrna_strand>GGTANCAACTCAATTATGATATCACTAATTGTAATTGTATAACAGTATGTAGAATGTAGAGTTAAACACAATTNCATTACACAAATTAAAAATCCCAAGAAAAACCCTAAATTNCAAGAAACACAGTAGCAATCACTCAAAAATTTCAATTACCAGTAATTAAAGATCATCTTCCATCCTCAAATACTCTCCAATATCAGCTTGATGAAGCACTACAATTCCATTCGGATCCATTTTCCGGCAATCCTGAGTACTCTTCGCTGCAACCCCAAATCCCAATGGCACATCCGACATCGAAAACACAACCACACCATCATGATCACTAATACTCTCTGTAATCCTTCCAACTCCACCTTTCAATACATTATTTCCATAAAGAAAACTCATCTCAGACGTGGGTTTCAGCCACACTTTGTGTTTCGCGTGTGCAGCTAAGAGACCCAAACATTGAACCGTGAGATGAAATTTACCTCCCTTGGTGAATTTCCCTAACTGGGTTCCCAGCGAAACTAAGTTATCTCGCTTTACGTTGGTTGCTCGCTTGACCAGAGATTCTGATACGTAGTAAACTCTGTTTCTCTGGAGACGAAAGCAGTAACGGCCGGGAGTGTTGTCGGTACCTTCGTGAGATGGGTTTTCCACTATGTTCTTCAGATTGTTTCCGACGAATTTGTGTAGCTTTTCGAACACCTGTGTTGTTTCTTGCTCATCTAGCGGTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567206" ref_strand="+" ref_description="SGN-U567206 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157351987|emb|CAO42977.1| (e_value=1e-81) unnamed; (*ATH) AT1G54570.1 (e_value=6e-65) | Symbol: None | esterase/lipase/thioesterase family protein, contains Interpro entry IPR000379 | chr1:20384145-20388688 REVERSE | Aliases: T22H22.2, T22H22_2; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=5e-64) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570; ">
      <seq>ttttgaactgcgcatttgctttcttatcttgataaattgtcaagaattttgtaaattattttgtattttggatgttaggtttcagtagttcaagcaactccacatgtatgtgaactcattttagccacgcatctgattaaagtttgtggctttaagcttctttgatgtgattaaaggagttttgcaatttcaagattctttttttttttggaaaaattaggaattcgtttcgggtttctttcactttcactatcaaaaactattgtttttgtctttccctttgatgggagtggtggaaaaagtgtctttaaaatatgagatatttatctgctagctttcttgtgctgttttcataaaacattacagtatttctacagaagtttgaaactttgcagtttgtggccatttgttgcaaaccatggcttctcttctgcataatttctgggcagtccctcgttttggtcttagtccggactataagcctcactgtatagctcggttcgcatgcttagctaacagggactctacatttttgtcttcagattctgttatagttaatggtgtgtcctccattgaagaaaaggagaaaagtagcacaataattgatgtgaaaaatagtcatctggctccagctattaaggagaagaacaaggaggatattcaaaacaagttggaaactctttgggatgatggatatggaactcaaactgttaaggattatcttgagataggatcagagattattaagcctgatggaggtcctccgcggtggtttactcccatatcagctggccctcctttggaagactctcctctcctcctttttctgccaggaatggatggcactggcatgggtcttgttttgcatgagaaggctcttgggaaagtttttcaggtttggtgcttgcatattcctgtgtatgatcgaacaccatttgatgaactggtgaaattcgtcgggagaactgtgaggatgaagcatgcttcatctccaaacaagccaatttatttagttggagattcatttggagggtgcttggctcttgccattgctgctcataaccctgagattgaccttgttctgatattagctaatccagcaacttcatttgacaggacacaactccaacctttgcttcctcttctggagtctctgcctgatgaatttcatgttacagtcccttatcttctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="25718" stop="29894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26018" g_stop="26849" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26850" i_stop="27095" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27096" g_stop="27147" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="885" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27148" i_stop="28396" i_length="1249">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28397" g_stop="28452" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="941" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28453" i_stop="29241" i_length="789">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29242" g_stop="29400" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1100" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29401" i_stop="29500" i_length="100">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29501" g_stop="29594" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="1194" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U567206" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1193</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26018" e_stop="26849"/>
          <exon e_start="27096" e_stop="27147"/>
          <exon e_start="28397" e_stop="28452"/>
          <exon e_start="29242" e_stop="29400"/>
          <exon e_start="29501" e_stop="29594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACTGCGCATTTGCTTTCTTATCTTGATAAATTGTCAAGAATTTTGTAAATTATTTTGTATTTTGGATGTTAGGTTTCAGTAGTTCAAGCAACTCCACATGTATGTGAACTCATTTTAGCCACGCATCTGATTAAAGTTTGTGGCTTTAAGCTTCTTTGATGTGATTAAAGGAGTTTTGCAATTTCAAGATTC-TTTTTTTTTTGGAAAAATTAGGAATTCGTTTCTGGTTTCTTTCACTTTCACTATCAATAACTATTGTTTTTGTCTTTCCCTTTGATGGGAGTGGTGGAAAAAGTGTCTTTAAAATATGAGATATTTATCTGCTAGCTTTCTTGTGCTGTTTTCATAAAACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAGGTAATCTTCAAAATCAAAAGAAAAATAACACTATAACATGTTTTTATATTAGTTTAGTGGTACAGATAGGGGAATTGATATCAGTTTGGTAGTCCTAAAATTTGAGGAAAGATCAATCCAATGTAGCAGTACGTTTCAGCAAGGTCATGCATGCTGTTCCTAGGATACAATTTTTATTATTAAATGTGTGGAGGGTTTCTCTTAATATTTTTGGATGACTTACTAGAATGCAATTCCAATGTATAGGAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGAGAAGGCTCTTGGGAAGTAAGTCCAAGCACTCTTCTATAATGTGTAATAATACTTTTCTGGTTCTGGTATAATTCCTATTGATGCTTAGGTAGCAATCAGCTAGCTTCATGATTCCACTAGTATGAGATACTGTAACTTAAGCTGGCCTCGTCAAATTGTGCGCACGTAATAAATATGAGACCAATGCCAATACCTTTCTCGTTGTTTTGGCTAAGATCAAGTATTGTACAACATCAATCACAATTGCTTTAGGCCTAGATTATTTGTTCTCCACTTATCTTTTTGCACCTTAAATGTTGCAAAAGACATTTCACTTTCTTGTGTCAAAGCAGATATAAAAGATTATTGATTTAAATTTAGTGGTCTGTATCCTACAATGCAATCTTCTTATATTTAAAGCTGTCAGTTGAGTGTGGCTTTGAGGTAGTGAGCTCCATATGATTAAATAATCTTGGAACTTGATATCCAAGTGCTATGATTATTTAGTTGAAAAAATATTGCTCCTGTGCTTCGTAAAGATGTAGTGGCTTTATTAATGGCATCATAGACTTCTATTTATTTGCTTCATAAATTTCTGGTTATAACAGTTGATGTCTATGTACTGTAGCAAGTCAAATCGTACAGTTGATGACTATTTATTGTATTAAATCAAATCACCTTTACAATACTACTGTATCATGTAAAGAAGTTTATGCATAGGAGCGGGGGTAGCTGCTGCGGGTTTCCCTTGTCATCAAAAAAAAATTACCACTGTATCATGTAAAGAAAGTACGAAGTGGGAACACTTCGGTAGTTTATTATGTTTAGGACTTCAGTATGTGTTCTAATCCAAGCATGGAATGTAATTATATCTTCTGCTTGTCGTTTCTATCAAAGATTGGGCACACTGGAAGTAAAAGATTCGTATAAGTGATATCTATTACTAGGATATTAATTTTACTATTATATATATGTGTTTATATTTAACTTCTTATTCACTTTTAGTTTTATTTTGTATGATGACGACATGAGTTGAGGTTAAATGGAGATGTGAGGATTATATAGCCGCAATTGTTCGGGATCGAGGCATAGTAGTTATTATTGTTGTTGCTTGTTGTGCTTACCCTGACTATATATACTCGTGGTAGAAAAGTTTGTTAACATTTTGTAGGCTATGATGCTTAATTTCGTATAATAGGGCTCGCTACTTATGGTTAAACAGTTCACTGGCCTTTCCGTTAGCACTTCAGTTCAAATTCTTGACTGAAGAATTGCTTGTTTGCAGAGTTTTTCAGGTTTGGTGCTTGCATATTCCTGTGTATGATCGAACACCATTTGATGGTATAGTATTTCTTCCCTTTATTTAGTGCTTTGTGCAAATATTGGTTGGTCCAACGAAGAACCTGTCTATTGTGAATTTATATTTATACTTGCAATAAGTATCAATTTAGAAACATTACAATACTATCACAGAGCGAAAGAGGTTTCTGTTACAAAGATCCATTGGTGTTTTAATTTGCGAGCTTGAAAGAATGAATTTGGGCAACTACTTGAAGAAGACACACTGAGGTTGATGGAAAGAAATCAACATATAGGGCATTATTTGATATTCTGCATGTCTCTCCAATTATCTCACATCTCTCTCTTTTAACTGATCAAATTAAGAAGTAAATTCTACATGCTTAGGAAATAAAGATTACGGAGAGAAGAAATTGGCGCTTATACTTTCTTTGTTTTCTACTTCTTTCTTCTTTCAGTCTGTTATCTTTTGGGACTTTTTAGTGGGGCGGAAAGGACTTGGCACAAGTTGGAAGGTTCTTTGTAGTTGTCTTCGTATGGTTAACTGCCAGTCGAAGTGTTAAAAACACGAAAAAATGGTTAAAGGTCTAATTTTCCTGCTTCGGAGAGTGGGGATCGAGGAAAGCAAAATGGTGTTTTTGTGGGTTCAGGGACTTGGGAGTTTGGCTGTTACTGTTTCAAAGCTTGGAATTCAGTTGTGATGTCAGAATATTTACTTTGACATATGTTGATTTATCTGAATGTGTTTTGGTTATGGAGCATCTGCATGTGAGATTTATCACAGCTGGAAAAGAACAAAGTTTGGTTATAGTCTATTTTCTTAAATTATAGAACTGGTGAAATTCGTCGGGAGAACTGTGAGGATGAAGCATGCTTCATCTCCAAACAAGCCAATTTATTTAGTTGGAGATTCATTTGGAGGGTGCTTGGCTCTTGCCATTGCTGCTCATAACCCTGAGATTGACCTTGTTCTGATATTAGCTAATCCAGGTAAGCTATCAGAAGGAGAGCCTTTCCTTATTGTAACTCTTTCTGGTATGCCACTGTATTAATGATCCATTATCTAATATTTAGTTTCTACATTTTTCAGCAACTTCATTTGACAGGACACAACTCCAACCTTTGCTTCCTCTTCTGGAGTCTCTGCCTGATGAATTTCATGTTACAGTCCCTTATCTTCTGAG</genome_strand>
        <mrna_strand>TTTTGAACTGCGCATTTGCTTTCTTATCTTGATAAATTGTCAAGAATTTTGTAAATTATTTTGTATTTTGGATGTTAGGTTTCAGTAGTTCAAGCAACTCCACATGTATGTGAACTCATTTTAGCCACGCATCTGATTAAAGTTTGTGGCTTTAAGCTTCTTTGATGTGATTAAAGGAGTTTTGCAATTTCAAGATTCTTTTTTTTTTTGGAAAAATTAGGAATTCGTTTCGGGTTTCTTTCACTTTCACTATCAAAAACTATTGTTTTTGTCTTTCCCTTTGATGGGAGTGGTGGAAAAAGTGTCTTTAAAATATGAGATATTTATCTGCTAGCTTTCTTGTGCTGTTTTCATAAAACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAG......................................................................................................................................................................................................................................................GAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGAGAAGGCTCTTGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTCAGGTTTGGTGCTTGCATATTCCTGTGTATGATCGAACACCATTTGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTGAAATTCGTCGGGAGAACTGTGAGGATGAAGCATGCTTCATCTCCAAACAAGCCAATTTATTTAGTTGGAGATTCATTTGGAGGGTGCTTGGCTCTTGCCATTGCTGCTCATAACCCTGAGATTGACCTTGTTCTGATATTAGCTAATCCAG....................................................................................................CAACTTCATTTGACAGGACACAACTCCAACCTTTGCTTCCTCTTCTGGAGTCTCTGCCTGATGAATTTCATGTTACAGTCCCTTATCTTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573513" ref_strand="+" ref_description="SGN-U573513 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157351987|emb|CAO42977.1| (e_value=2e-71) unnamed; (*ATH) AT1G54570.1 (e_value=8e-71) | Symbol: None | esterase/lipase/thioesterase family protein, contains Interpro entry IPR000379 | chr1:20384145-20388688 REVERSE | Aliases: T22H22.2, T22H22_2; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=7e-70) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570; ">
      <seq>ggccagcaacttttttaagttgcttgcaacaaagtcacatgttctgttgtatcctggtggtgcccgtgaggccttacatcgtaagggagaagagtacaaggtgatatggcctgaccaaccagaattcatcagaatggctgcaaaatttggtgcgacaattgtgccatttggggttgtaggagaagatgatatagcacagttagttctcgactatgacgacctaaaaagtatacctatattgggtgatcggataaggagtgagaacgaagaggcagccaggaggggcttagcagtcagggcggacatggacggggagattgccaaccaaatgttgtatatccctggccttttacctaagatacccggtcgtttttacttcttttttgggaaaccaattcatacaaagggaaggcaagacctggtgaaagatagagaaaaagcaagagaattatacttgcaggtaaaatctgaagttcaaaataacatgaattatttgcttaagaaaagagaggaggatccttaccggaacttcatcgatcgaaccatgtatagagcattttctgccacttctggtgatgtcccaacatttgatttttagatgaccagttagaagtccgattatttttttttttgggtaaaggctcttacccattgtttaattctatgttgtaatttttttaaaaaaatatttatgttccaatatgagcaagctttccttcccccaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="37442" stop="41440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37741" g_stop="37825" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37826" i_stop="39195" i_length="1370">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39196" g_stop="39309" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="199" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40490" g_stop="40587" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40709" g_stop="41141" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="733" r_length="436" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U573513" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37741" e_stop="37825"/>
          <exon e_start="39196" e_stop="39309"/>
          <exon e_start="40490" e_stop="40587"/>
          <exon e_start="40709" e_stop="41141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGCAACTTTTTTAAGTTGCTTGCAACAAAGTCACATGTTCTGTTGTATCCTGGTGGTGCCCGTGAGGCCTTACATCGTAAGGTGTGTTATAATCTTCTCCTTGGTTAATTCCATCTTCTATATTTCTCAAAATGGAATCTTCGTACAATCCTTATTCATGCATTCACCTAGAAGTATAATAAAATTGCTATCGCTTTAAAATCATTGTCAATTCCAGTTCCTTACCTTTTTGCTAAAATTACTGGTACTTAATACTGGAATTTTCTGCTTGAAGATGCATTTTCTTCTGTTATAAAGGATTTTAACGAATAGTTGGACAACTTCATTTTTCTTTTGAATTTGATGACGACATCTTGCAATGCAAAGATAACAAAGCAATGTCATTTTGTTGTTAAATGAGTAAAGGTTTCATGTAATCCATACTATCCGTGCCATTATCAGCATTTCAGCTGTAAATGGTTTTTAGATGCCTTAGAGAATCCATGCCCTTCTTGAGTCTTGTAGACCCAAGGTTTTCTCCAATTTATTGGATTGAGATGTTAATTTTAAATTTTATTTTTTTCTTTCTTTTTGTAAATGAACTTGTAAGGAAAAATCGAGAATTTACTATTGAAAGCAACGTAATCGTAGATATTGTCACCCTAATTCAATGGAAGTGTTGAATTACGAGAACGTCCTCATTTAAAAGTTAAAAATTATTACAGTGGAGTCACATATATTTATTTAATTATGTCTTTAACATGCTGGTCAACTCTTTTTCATGGACCAAGCACATGAAACTTTTTTGATGAGAGGTGTCGTTGAAGCTCGAATTCCCAACACTTGTGTTGGCTCTGCTACCATGTAGAAAATAAGAAAAGAGAAAGATGTATTGAACTGGCGATATGATGAATGCATAACACACTTTATGTGTCAACCAGAATGCACATAACATTTGTTCAATGTGGATAATATCGTAGTTACGAATTTAATCCTGAAATGTAACTCTATACTATGTTATTTTAACCGTCAATACTTCACTTCTAACATAACACAACAAGCACCTTATATTCTTGAATTTCGACAGAGCTGACCAGGTACTCCCAATCTATGTTGCTCGGACTCTTCAAAAATGTCAACGGGTGCGTGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAGAATCTGACACGGGTGCGGCATCAAAGCGAGGAGTCCGCGCAACTTAGCTCCCAATAACAAAGTGATTATATTCTGGACATGTTTGGTTCTGATTTTCATCTCTTATTAGCTTTCTGTGCTGTTTTTTAACTGCTATTCACAAAGCTATCTTGAAGAGAAAAACTGGTGACTGGCTGTCACTCAGTGTACCTCATTACAATGAAAGAAAAATAACAATAACCTCATTTTCAAGTTAGAGTTTTCCCTTCTTTAGGTTATTTCCTTATGTTGATGGTTTTCTATTTGTTGTAGGGAGAAGAGTACAAGGTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAGGTTTGTTAGTCCTACATATTTTTTCCTTTGCAACATTAGAAGTAGTAATGATGCTCTTTTGGTTCCTCGATATTACGTCCCCAAAAAGCTTGTTAGCTTGTTTCCTTTCATGTTTGGAAGCTGCAAAGAGGTTTTCTCGTCTCTCGGGTATTTTGCATGTTTGGAGGAATTAACTTTGTAGGAGAAACTTAACTCATAGAAATTAAAAAAAGAGGAACAAGCAGGAAGTCTTCACTTATTCTCCTTTGACACGTATGTAGAAACTGGTTCAACTAAAAATGGATTATACTGAGGAGTTGCTTCTTCCCTTTTCTCACCATTTCCTGCCAAAGGGGGATTCTTGTACTTCTATCTTTCTTTTGTGCAACAAGTCAATGACAATTTCTATCTCAACCATCGGAAATCAGAAAACTAGTTACTCTGTGTTTCAATTTGTTTGCTTGGTTTTAACTCTGCACATAGTTTAAGTAAGTAAAGCAAATTTTTGAATCTTGTGGTTTTAAACTAAAGATATGTAGAATTTCAAAATGTCCTTCAATCTTGTGATCTTAAACATGTCACGTGGAAGTAAGAATTAAAGAGCTATCGAAAAAGGAAAAAGACATTCTTTTTAAGCAGACTAAAATGGAAAGTAAGACAAACAAATTCAGACGGAGGGGTTATATTTTACTTTTTGCATTTTGTTCCTATTATAAGCTGTTGATACTTTCATCTGATGAGATGAACAAATTTGAACACTCTTCAAGGCTTGAGCATTCTTTTCAGTGAAACTTGTGCATCTGTTTAACACCATTGACCCTTTATTTCTTCTTCTTTTTTTGAGGATACAAATATGACAGTCCAATCTAGCCAGTGAGCCACCATCCTGATTCATGTGATTCGATATATTTCTTAACTAGGTTCAACGAGTTAAAGTCTCAAAAATTAATAGTAAAAGATATCCTTCTTGGGAGGTGGATATTATTAATCCAAGAGATTAATCCAATGGTTTGGTTTTGGGGGTGGGGTGGGGGGGGGTGCAGCTTTGAGCTTAAGGTCAATTACCCATTGACTTTCTTGCCAAGCTCATGATTCCGCTAAGAAATAGTCCAAAATCAGAAATACGGACATTCAAATAGCAACATATTGAATGCATTCTATATACAGAACTGTTGCCTGATCTTATATGTTTTGATTGCAGTTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAGGTCATCTTCTAATATATTGTTTTTGTCTCATTCCTAATATTTGCTCCAAGCTCACTTGCTTCTTTCATTCTTAACCATTTATTTTTACACCCTTTAACCATCCCATTAAATTTTTCTATAGGGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTA-TTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAA-TTTTTT-AAAAAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCACCAATAACTAAG</genome_strand>
        <mrna_strand>GGCCAGCAACTTTTTTAAGTTGCTTGCAACAAAGTCACATGTTCTGTTGTATCCTGGTGGTGCCCGTGAGGCCTTACATCGTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGAGTACAAGGTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG.........................................................................................................................GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTTTTTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTTAAAAAAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCCCCAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573085" ref_strand="+" ref_description="SGN-U573085 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|6647432|sp|Q27409|FP1_MYTGA (e_value=4e-20) Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1) (MGFP-1); (*ATH) AT4G35800.1 (e_value=6e-14)  Symbol: None | DNA-directed RNA polymerase II largest subunit (RPB205) (RPII) (RPB1), nearly identical to P:P18616 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) {Arabidopsis thaliana} | chr4:16960661-16967896 REVERSE | Aliases: F4B14.7... ; (*SWP) sp|Q27409|FP1_MYTGA (e_value=3e-21) Adhesive plaque matrix protein OS=Mytilus galloprovincialis GN=FP1; ">
      <seq>caataaacataaagaaccagttatattctaaataatagttatggctagttttagcaagggtggaagttttaacagctatagtgactaccctgatcatgtttgtcgccctgtgattgttggacatagtgttgggggcttcatggtgagagctcaaagagttgttgaagttcgtcgtagttatggaatacccctgaatggtcatgtagatgagtacgatgtgcatgaagaatgggacgatgatagtccaaggaaagtcagtgacttcttccataaagttcataatgaagctagtcgaccaactcattccactcttttgagccctccaaagttgatcactgtaaggcctagttggacaagtgaagatcatgactctccaaagtatagggagcatcacgattttagtggcagccctcttcgtaataaatttgaagggtttcaccttcaaggtagtcgaggatcaagtccgtataagtacaagaatgatggttatggccactccatgggttctcccaaggctggccatgtgaaggactatggggtcaacaacacatgggattcaccaccaagatcaaggttaactgatgacgattgggatggcaggagagatcatgatgattatggcaagccaaaattcaatggaggttacaagataactagtgctccacttagccaggccacaaatgatataggcaagatccttggggtaggtagtaaacctttggctcctcctacttatgcaccaaaatcacattttccagcatcttactcaactccacatataaaagaaagttaccctgagagaactcaaggtgaaaagcctctggcttcacctgtttcaacccaatcatcctattatccaacgtcaaatccgataaccgaaaggaaagaaagttaccctgaaccaacaaaaggaacgaagcctctgtcttaccctgtttatacaaaacaaccatactcaccaacttcaaactaccctgaaacaaatcagggaccaaggcctctgttttcccctggctacacgcaacaatcgcattcaccaacttcaaacccgatacctcaaaggaaagagaactaccctgaaacagcacacggcacaaagcctctgtttacccctggctatacacaacaatcacattcaccaacttcaaacccgatacctcaaaggaaagagaactatcctgaaacagaacacagcgtaaagccttcgttttccactggttataaaccacaatcacattcaccaacttcaaacccaacacctcaaaggaaagaaagctacccagaaacaaaacacgacacaaaccctatgttttcccctgtttctacacaacaatcaactgaaaatccgacctctcaaaacaacgaaagtcacccaaagaagaaaaaaggttggacatctctgttttcctctccttctaagcaacaaccacaccctccaacatcacactcaacacctgatatgaaacaaagctaccctgatcatgaaactcaaggtttccacccctcatttaccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="41735" stop="44158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42034" g_stop="43226" g_length="1193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1192" r_length="1192" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43227" i_stop="43531" i_length="305">
            <donor d_prob="0.495" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43532" g_stop="43858" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1193" r_stop="1519" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U573085" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1520</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42034" e_stop="43226"/>
          <exon e_start="43532" e_stop="43858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTGAAACAGAACATGGCGTAAAGCCTTCGTTTTCCTCTGGTTATAAACCACAATTTCATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAAACAGAACACGGCGTAAAGCCTTGGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAAAAAGAACACAGCGTGAAGCCTTTGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACTTCAAACCCAACACCTCAAAGGGAAGAAAGCTATCCTGAAAAAGAACACAGCGTGAAGCCTTTGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTACCCAGAAAGAACACACGATACAAACCCTATGTTTTCCCCTGTTTCTACACAACAATCAACTGAAAATCCGACCTCTCAAAACAACGAAAGTCACCCAAAGAAGAAAAAAGGTTGGACATCTCTGTTTTCCTCTCCTTCTAAGCAACAACCACACCCTCCAACATCACACTCAACACCTGATATGAAACAAAGCTACCCTGATCATGAAACTCAAGGTTTCCACCCCTCATTTACCCCTTCT</genome_strand>
        <mrna_strand>CAATAAACATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTGAAACAGAACA-C.................................................................................................................................................................................................................................................................................................................AGCGTAAAGCCTTCGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTACCCAGAAACAAAACACGACACAAACCCTATGTTTTCCCCTGTTTCTACACAACAATCAACTGAAAATCCGACCTCTCAAAACAACGAAAGTCACCCAAAGAAGAAAAAAGGTTGGACATCTCTGTTTTCCTCTCCTTCTAAGCAACAACCACACCCTCCAACATCACACTCAACACCTGATATGAAACAAAGCTACCCTGATCATGAAACTCAAGGTTTCCACCCCTCATTTACCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594790" ref_strand="+" ref_description="SGN-U594790 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ataaaccacaattcattcacaacttcaaacccaacacctcaaaggaaagaaagctatcctgaaacagaacacggcgtaaagccttggttttccagggagttaaaccacaatcacattcaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="42954" stop="43681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43254" g_stop="43381" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U594790" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>128</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43254" e_stop="43381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACCACAATTTCATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAAACAGAACACGGCGTAAAGCCTTGGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACT</genome_strand>
        <mrna_strand>ATAAACCACAA-TTCATTCA-CAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAAACAGAACACGGCGTAAAGCCTTGGTTTTCCA-GGGAGTTAAACCACAATCACATTCACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574593" ref_strand="+" ref_description="SGN-U574593 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15241725|ref|NP_201024.1| (e_value=8e-47) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G62180.1 (e_value=7e-49) | Symbol: None | expressed protein, similar to PrMC3, Pinus radiata, GI:5487873 | chr5:24996070-24997075 REVERSE | Aliases: MMI9.26; (*SWP) sp|Q9LYC1|GI1L2_ARATH (e_value=4e-18) Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2; ">
      <seq>gatattaaacaccactaatattcatacctccatactatagtttgttagtttccagatttaactgccatgtctgatcaaattgtcatgtcaattgatccaaatgtcgacccttatggatgtttgggcattgttcgtaacagtgacgactctatcacacgtccacaaattcctcgttcatttttcagtactattcctgataatgatttctccgtctttataaaagattttgtcatcaattccactaaagacatgtgggctcgtatagtcacccctcgtgaagtactaaactcggaaattaaactccctcttgtagtatattttcacggtggaggattcgtaatggcagttactgtagacacaccaatcttacaaaagttttacacaacactcgcagtcgaaattccagcgataattgtatcagtcgattatcgatacgctccggaaaatcgactcccggcagcttacgatgattgcgtggaatcgctatattggatcaaaaatacccctaacgagctgttgaaaaaacacgctgatttgtccaaatgctttctattgggcactagtgctggtggcaacatagccnataacgtanggctacgtgtagctgangttagtgaatgccttnancctttagaaatcanagggttgattttacatcatgcattttttggtgggaatgaaaggacgaaatcggaattaagantagttcgtgataganattgcctctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="45171" stop="46500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45470" g_stop="46200" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U574593" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45470" e_stop="46200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAAACACCACTAATATTCATACCTCCAATACTATAGTTTGTTAGTTTCCAGATTTAACTGCCATGTCTGATCAAATTGTCATGTCAATTGATCCAAATGTCGACCCTTATGGATGTTTGGGCATTGTTCGTAACAGTGACGACTCTATCACACGTCCACAAATTCCTCGTTCATTTTTCAGTACTATTCCTGATAATGATTTCTCCGTCTTTATAAAAGATTTTGTCATCAATTCCACTAAAGACATGTGGGCTCGTATAGTCACCCCTCGTGAAGTACTAAACTCGGAAATTAAACTCCCTCTTGTAGTATATTTTCACGGTGGAGGATTCGTAATGGCAGTTACTGTAGACACACCAATCTTACAAAAGTTTTACACAACACTCGCAGTCGAAATTCCAGCGATAATTGTATCAGTCGATTATCGATACGCTCCGGAAAATCGACTCCCGGCAGCTTACGATGATTGCGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAACACGCTGATTTGTCCAAATGCTTTCTATTGGGCACTAGTGCTGGTGGCAACATAGCCTATAACGTAGGGCTACGTGTAGCTGAAGTTAGTGAATGCCTTAAGCCTTTAGAAATCAAAGGGTTGATTTTACATCATGCATTTTTTGGTGGGAATGAAAGGACGAAATCGGAATTAAGATTAGTTCGTGATAAGATATTGCCTCTTA</genome_strand>
        <mrna_strand>GATATTAAACACCACTAATATTCATACCTCC-ATACTATAGTTTGTTAGTTTCCAGATTTAACTGCCATGTCTGATCAAATTGTCATGTCAATTGATCCAAATGTCGACCCTTATGGATGTTTGGGCATTGTTCGTAACAGTGACGACTCTATCACACGTCCACAAATTCCTCGTTCATTTTTCAGTACTATTCCTGATAATGATTTCTCCGTCTTTATAAAAGATTTTGTCATCAATTCCACTAAAGACATGTGGGCTCGTATAGTCACCCCTCGTGAAGTACTAAACTCGGAAATTAAACTCCCTCTTGTAGTATATTTTCACGGTGGAGGATTCGTAATGGCAGTTACTGTAGACACACCAATCTTACAAAAGTTTTACACAACACTCGCAGTCGAAATTCCAGCGATAATTGTATCAGTCGATTATCGATACGCTCCGGAAAATCGACTCCCGGCAGCTTACGATGATTGCGTGGAATCGCTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAACACGCTGATTTGTCCAAATGCTTTCTATTGGGCACTAGTGCTGGTGGCAACATAGCCNATAACGTANGGCTACGTGTAGCTGANGTTAGTGAATGCCTTNANCCTTTAGAAATCANAGGGTTGATTTTACATCATGCATTTTTTGGTGGGAATGAAAGGACGAAATCGGAATTAAGANTAGTTCGTGAT-AGANATTGCCTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572785" ref_strand="+" ref_description="SGN-U572785 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|82697959|gb|ABB89014.1| (e_value=2e-65) CXE; (*ATH) AT5G62180.1 (e_value=1e-60) | Symbol: None | expressed protein, similar to PrMC3, Pinus radiata, GI:5487873 | chr5:24996070-24997075 REVERSE | Aliases: MMI9.26; (*SWP) sp|Q6L545|GID1_ORYSJ (e_value=4e-26) Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1; ">
      <seq>gattttcatggtggaagatttgtaatggcaattactgtaaacacaccgattttacaaaaattttgtgcaacacttgcggttgaaattccagcaataattgtatcggttgattaccgatacgcccccgaaaatcgactcccagcagcgtatgatgattgtgtggaatcgttatattggatcaaaaatacccctaacgagctgttgaaaaaatatgctgatttttcaaagtgttttctattgggcactagttctggtggcaacatagcgtacaacgtaagactacgtgtagctggagttggtgaaaatcttaagcctttagaaatcaaagggttaattttatatcatagtctttttggtggaaatgagaggacaaaatcggaattaagattagctcacgataagatgctgccccttaatgtgagtgatattatgtgggagctagggttgcctattggtagcgatcgcgatcatccatattgtaatccgatggtggagattcgatcaaatgaaaatttgtttgatcaagtgaaaatacaaggttggaagattctgatcattgactgtgatggtgatcctttggtcgatcgacagattgagttttcaaagatgttgaaggcaaaaggtgtgcaagttgtggattgttttagtgaaggaggatttcatggttgtgagtattttgatggcatgaagttgaaggaattgccccttgttgtaaaggaatttatgagaagtaattaattaaagtacttgtggcaagtgatctttaatttgaaagaaatatttgtaacaattatgaaaataggagtcccctctcagagctatactttgagataaaagaagaagccctgtttagatttcgagttctacagtttcaaaataagttgtgaagtatcgtccatatatatatctcaaaatgtactatttagagcgagatataccctttgtttaaaaagtgaagccaaatatatccttgttctacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="47443" stop="49019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47742" g_stop="48719" g_length="978"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="983" r_length="983" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U572785" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47742" e_stop="48719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGAGGATTTCATGGTTGTGAGTATTTTGATGGCATGAAGTTGAAGGAATTGACCCTTGTTGTAAAGGAATTTATGAGAAGTAATTAATTAAAGTACTTGTGGCAAGTGATCTTTAATTTGAAAGAAATATTTGTAACAATTATGAAAATAGGAGTCCACTCTCAGAGCTATACTCTGAGATAAAAGAAGAAGCACTGTTTAGATTTCGAGTTCTACAGTTTC-AAATAAGTTGTGAAGTATCGT-CATATATATATCTC-AAATGTACTACTTAGAGC-AGATATACCCTTTGTTTAAAAAGTGAAG-CAAATATATCCTTGTTCTACTTGT</genome_strand>
        <mrna_strand>GATTTTCATGGTGGAAGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAAGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGAGGATTTCATGGTTGTGAGTATTTTGATGGCATGAAGTTGAAGGAATTGCCCCTTGTTGTAAAGGAATTTATGAGAAGTAATTAATTAAAGTACTTGTGGCAAGTGATCTTTAATTTGAAAGAAATATTTGTAACAATTATGAAAATAGGAGTCCCCTCTCAGAGCTATACTTTGAGATAAAAGAAGAAGCCCTGTTTAGATTTCGAGTTCTACAGTTTCAAAATAAGTTGTGAAGTATCGTCCATATATATATCTCAAAATGTACTATTTAGAGCGAGATATACCCTTTGTTTAAAAAGTGAAGCCAAATATATCCTTGTTCTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574851" ref_strand="+" ref_description="SGN-U574851 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157346315|emb|CAO16012.1| (e_value=5e-106) unnamed; (*ATH) AT5G03800.1 (e_value=4e-89)  Symbol: EMB1899 | similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:At3g49170.1); similar to OSJNBa0060B20.9 [Oryza sativa (japonica cultivar-group)] (GB:XP_474905.1); contains InterPro domain PPR repeat (Inte... ; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=3e-50) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12; ">
      <seq>ggtgtccttgtgatatcagcttatagacacacttccacaaatttagttgattgttgccaaaagttcttttcctctatgcaatcctcatataacgtaaaccccacctcggagcattatgcaggttttgtaggtgtcttaggctattggggtctgctcgaagaagcagaaaagataattaatgcaatgccgtttgaaccaaaggcttctgtttggcatgctttgcttgatggttgtaggttacatgtgaatgctatcattggaaaaagggccatgaagaatatactttccattgtcccacaggatccttctactttcatactaaagtcaaatctttactcagcatctggaagatggcagtgttcggaacttgttagggcggagatgagggagaagggtatccaaaaaataccaggacgcagctggatcatatttggcgacaaggttcactccttctttgctagagacaaattgcattcacagtcaaaagacatatacagtggcttacaaatacttattttggagtgtctgaaagctggatatgtacctgatacaagtcttgtgcttcatgaagtagaggagcatcagaagaaagacttcttgttctaccacagtgcaaaactatctgtaacctttgggcttcttatgactagacctggaaaacctgttcgcgttatgaagaaatgtgcttctctgtggtgactgccatacatttcttcaaatatgtttctgttatcaccaagagagatatacacgtaagagacgcttcaggttttcatcattttgtaaatggaaaatgctcgtgcggggataattggtgctgagaaaagagatattttgatatttttagctgtagtcttacattgttgttttcaagatttttgtaactaatatttttaaacttgtgttagatatacaacaatttagatgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="50139" stop="48610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49840" g_stop="48910" g_length="931"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="933" r_length="933" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-U574851" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49840" e_stop="48910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCC-AAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAG-AATGTGCTTCTCTGTGGTGACTGCCATACA-TTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATCATTTTGTAAATGGTAAATGCTCGTGCGGGGATAATTGGTGCTGAGAAAAGAGATATTTTGATATTTTTAGCTGTAGTCTTACATTGTTGTTTTCAAGATTTTTGTAGCTAATATTTTTAAACCTGTTGTTAGATATACAACAATTAGAATGTATTTA</genome_strand>
        <mrna_strand>GGTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCCAAAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAGAAATGTGCTTCTCTGTGGTGACTGCCATACATTTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATCATTTTGTAAATGGAAAATGCTCGTGCGGGGATAATTGGTGCTGAGAAAAGAGATATTTTGATATTTTTAGCTGTAGTCTTACATTGTTGTTTTCAAGATTTTTGTAACTAATATTTTTAAACTTG-TGTTAGATATACAACAATTTAGATGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596688" ref_strand="+" ref_description="SGN-U596688 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggggcatagtataaatcttcccgggggatgctgaaagaactgtataataggtgttatcctttttcaaccatgaatgaacaagcagaattatacaaaatgtcgatgagtaagatagaggagatgcaattacaccgggcaaatatagatgtaaaattttctaccaactgcagaagtcgaacataccatcacaaagaattaactctggtagtactaatatacatgtaactggggagcttcacgccaccacaacaaattgagaagtcaaaaaccagaaggacccttctatatttggaaatggaaaaggaaagcaatgcttcgctctgggcattactataaacccttctctggaagatgcattaataacaaaatgcttcaaagtgttgccatggccagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="+" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="52148" stop="53115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52421" g_stop="52815" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="+" ref_id="SGN-U596688" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52421" e_stop="52815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATAGAATCAATCTTCCCATTTCATGCTGTAAGAACTGTATAATAGGTGTTATCCTTTTTCAACCATCAATGAACAAGCAGAATTATACAAAATGTCGATGAGTAAGATAGAGGAGATGCAATTACACCGGTCAAATATAGATGTAAAATTTTCTACCAACTGCAGAAGTCGAACATACCATCACAAAGAATTAACTCTGGTAGTACTAATATACATGTAACTGGGGAGCTTCACGCCACCACAACAAATTGAGAAGTCAAAAACCAGAAGGACCCTTCTATATTTGGAAATGGAAAAGGAAAGCAATGCTTCGCTCTGGGCATTACTATAAACCCTTCTCTGGAAGATGCATTAATAACAAAATGCTTCAAAGTGTTGCCATGGCCAGCC</genome_strand>
        <mrna_strand>GGGGCATAGTATAAATCTTCCCGGGGGATGCTGAAAGAACTGTATAATAGGTGTTATCCTTTTTCAACCATGAATGAACAAGCAGAATTATACAAAATGTCGATGAGTAAGATAGAGGAGATGCAATTACACCGGGCAAATATAGATGTAAAATTTTCTACCAACTGCAGAAGTCGAACATACCATCACAAAGAATTAACTCTGGTAGTACTAATATACATGTAACTGGGGAGCTTCACGCCACCACAACAAATTGAGAAGTCAAAAACCAGAAGGACCCTTCTATATTTGGAAATGGAAAAGGAAAGCAATGCTTCGCTCTGGGCATTACTATAAACCCTTCTCTGGAAGATGCATTAATAACAAAATGCTTCAAAGTGTTGCCATGGCCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564171" ref_strand="-" ref_description="SGN-U564171 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|7671528|emb|CAB89490.1| (e_value=9e-40) CRK1 protein [Beta vulgaris subsp. vulgaris]; (*ATH) AT1G54610.1 (e_value=5e-32) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr1:20397429-20400853 REVERSE | Aliases: T22H22.5, T22H22_5; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=4e-31) Putative serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610; ">
      <seq>acgccatcgtgaacgaacccgtgctggccctgctccagatgccaatgcagaaaatcaagctaatatcgacaggcgtcgcctaatcactcacgcaaatgcaaagagcaagactgagaagtttcccccaccacaccagaacggaggacttggcgttcccttgggtgcttcacatcacattgatccgtcccttgtccctccggatgtgccattcagttcgacctcattcacatattcaaaagaacctgtccagaattggtcaggccctttagtagagcctgcttcagctggtggaaggcggaagaagcatactgcaggcgatgccaaaaagcatttgtcaaagagaagatgagaagcagccttgttttgggtagcagcagagcgagagcttcagatgagtgtttctatggcctattctggaaataacattaaaagtggggggctggccatggcaacactttgaagcattttgttattaatgcatcttccagagaagggtttatagtaatgcccagagcgaagcattgctttccttttccatttccaaatatagaagggtccttctggtttttgacttctcaatttgttgtggtggcgtgaagctccccagttacatgtatattagtactaccagagttaattctttgtgatggtatgttcgacttctgcagttggtagaaaattttacatctatatttgaccggtgtaattgcatctcctctatcttactcaacgacattatgcataattctgcttgttcgttgatggttgaaaaaggatgtcacccattacacagttcttacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="54064" stop="52150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53764" g_stop="53695" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53694" i_stop="53183" i_length="512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53182" g_stop="52450" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="803" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-U564171" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564171" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53764" e_stop="53695"/>
          <exon e_start="53182" e_stop="52450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCATCGTGAACGAACCCGTGCTGGCCCTGCTCCAGATGCCAATGCAGAAAATCAAGCTAATATCGACGTATGCCATTGTGATATGTCTCCTTCTTTCTTATGGTTCTGTTATAGTTGAAGCTTCTTATTTTTATTTTTCTGATTTACTATGCCGCACATTATTTTATCATCACTTGTCTTGTTGTTTAGTGTCACCAAGAAAGTTTAAGTTTGAACAAAGTTTTTCATCAACTGTCAAATAAACAGAAATTTGGATGTAAAGTGGGAGATATGAGTAGCTAGTCTAAAGTAGACCAAGAGCAGTCACATAAGTTCTCTCTGTTATGCTTCCTTGGAGACTTATTAGAAGTCTTTGTTCCTTTTTTTCCTTTTACTTTAGCAAGTTTCAGGCTTGGCACTTTTCAATGGCATATAGGCTTCTTTATTTCATCTGTATAATTTTTGGGCCAAGTTTCAGTGGTGTATAGTCCTTCAGACAACGTTATACTCTCTACTTACATGATGACTACTGCATTAGTTTTATCAGTTGCTATGTTTGATTTTTTTAATTGGTATTTTGCCTATCTGTATACTTTGCAGAGGCGTCGCCTAATCACTCACGCAAATGCAAAGAGCAAGAGTGAGAAGTTTCCCCCACCACACCAGGACGGAGGACTTGGCGTTCCCTTGGGTGCTTCACATCACATTGATCCGTCCCTTGTCCCTCCGGATGTGCCATTCAGTTCGACCTCATTCACATATTCAAAAGAACCTGTCCAGAATTGGTCAGGCCCTTTAGTAGAGCCTGCTTCAGCTGGTGGAAGGCGGAAGAAGCATACTGCAGGCGATGCCAAAAAGCATTTGTCAAAGAGAAGATGAGAAGCAACCTTGTTTTGGGTAGCAGCAGAGCGAGAGCTTCAGATGAGTGTTTCTATGGCCTATTCTGGAAATAACATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCATCGACATTTTGTATAATTCTGCTTGTTCATTGATGGTTGAAAAAGGATAACACCTATTATACAGTTCTTACAGC</genome_strand>
        <mrna_strand>ACGCCATCGTGAACGAACCCGTGCTGGCCCTGCTCCAGATGCCAATGCAGAAAATCAAGCTAATATCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTCGCCTAATCACTCACGCAAATGCAAAGAGCAAGACTGAGAAGTTTCCCCCACCACACCAGAACGGAGGACTTGGCGTTCCCTTGGGTGCTTCACATCACATTGATCCGTCCCTTGTCCCTCCGGATGTGCCATTCAGTTCGACCTCATTCACATATTCAAAAGAACCTGTCCAGAATTGGTCAGGCCCTTTAGTAGAGCCTGCTTCAGCTGGTGGAAGGCGGAAGAAGCATACTGCAGGCGATGCCAAAAAGCATTTGTCAAAGAGAAGATGAGAAGCAGCCTTGTTTTGGGTAGCAGCAGAGCGAGAGCTTCAGATGAGTGTTTCTATGGCCTATTCTGGAAATAACATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCAACGACATTATGCATAATTCTGCTTGTTCGTTGATGGTTGAAAAAGGATGTCACCCATTACACAGTTCTTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601392" ref_strand="+" ref_description="SGN-U601392 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggtgagtgcagctttaaagttaagaggaatgccatctgtgttagcaaactagaagagagaatagtgttactgatcctagtaatctaagtatggaggtcttgtgcgcactttactttatctggcaacaatatgtcatttgcagtgtagaaatataaagtcagatatccgtgtctcgtgaaaaagatatttgtagcatacaggacttgcttgtcaacttgtcaatgctttagctttacattgttattgtaccatgtttggatgcaattgatcttttggaaatcttattcttctctcattggttttacagtttcaacaatgtaactatagaggccattgatatttgtaaattcattttttccatttctaattagaaataacaatattaaatattcacttctgggttccatctgatgcttgtgaaatggtgacaagctgttcattccatctcatcatgcaggctaagagccgctaataaagctacaggagatggtgctaagagagtacgccatcgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0123A07-0FYvz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0123A07.1" temp_strand="-" temp_description="C01HBa0123A07.1  AC238906.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0123A07 upload_account_name:manual">
        <position start="54566" stop="53452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54266" g_stop="53752" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0123A07.1" gen_strand="-" ref_id="SGN-U601392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0123A07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54266" e_stop="53752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGTGCAGCTTTAAAGTTAAGAGGAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTACTGATCCTAGTAATCTAAGTATGGAGGTCTTGTGCGCACTTTACTTTATCTGGCAACAATATGTCATTTGCAGTGTAGAAATATAAAGTCAGATATCCGTGTCTCGTGAAAAAGATATTTGTAGCATACAGGACTTGCTTGTCAACTTGTCAATGCTTTAGCTTTACATTGTTATTGTACCATGTTTGGATGCAATTGATCTTTTGGAAATCTTATTCTTCTCTCATTGGTTTTACAGTTTCAACAATGTAACTATAGAGGCCATTGATATTTGTAAATTCATTTTTTCCATTTCTAATTAGAAATAACAATATTAAATATTCACTTCTGGGTTCCATCTGATGCTTGTGAAATGGTGACAAGCTGTTCATTCCATCTCATCATGCAGGCTAAGAGCCGCTAATAAAGCTACAGGAGATGGTGCTAAGAGAGTACGCCATCGTGAA</genome_strand>
        <mrna_strand>GGTGAGTGCAGCTTTAAAGTTAAGAGGAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTACTGATCCTAGTAATCTAAGTATGGAGGTCTTGTGCGCACTTTACTTTATCTGGCAACAATATGTCATTTGCAGTGTAGAAATATAAAGTCAGATATCCGTGTCTCGTGAAAAAGATATTTGTAGCATACAGGACTTGCTTGTCAACTTGTCAATGCTTTAGCTTTACATTGTTATTGTACCATGTTTGGATGCAATTGATCTTTTGGAAATCTTATTCTTCTCTCATTGGTTTTACAGTTTCAACAATGTAACTATAGAGGCCATTGATATTTGTAAATTCATTTTTTCCATTTCTAATTAGAAATAACAATATTAAATATTCACTTCTGGGTTCCATCTGATGCTTGTGAAATGGTGACAAGCTGTTCATTCCATCTCATCATGCAGGCTAAGAGCCGCTAATAAAGCTACAGGAGATGGTGCTAAGAGAGTACGCCATCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8054" PGL_stop="9560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8054" e_stop="8185"/>
            <exon e_start="8827" e_stop="9309"/>
            <exon e_start="9422" e_stop="9560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="8054" e_stop="8185" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8186" i_stop="8826" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8827" e_stop="9309" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="9310" i_stop="9421" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="9422" e_stop="9560" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8054" stop="8185"/>
              <exon start="8827" stop="9309"/>
              <exon start="9422" stop="9560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCGATTGATTCTTTTATGATTATACTCTTTTCTTGTCTTACAGCAAAGAAACGTTGAAGACTACAGACACCACATAAAACTCTCTCTCTCTTATTTCCTATTTTTGGCTCAGATTTGATCAACCCAGCAA : GTGTTGTAGATTCTGAGTTGATTGTGGAAATTGGTTGGTTAATCCATGAGAATGTTGAGTTATGAAGTGTAGACCTGAAAGATGGGGTGTGTTTTGGGTCGGGAAGCTTCATCAGGCTTAGTACACAATGGCAGAGAGGAGAAAAGGGAAGGTGCACATTATGAGAAGAAGAGTCAGAGCATTAGCGCTGAATCCACTGAAACTTTTGAGGTCAAGGGGGCTGAAAATGTAACTGTTGACACTGAAGTTGTGGAAGCCGATGAAGGTGATGAAACTAAGAAGGATGACAAGACGGAGCATGACGGAAAATCTAGGAAAGAAAAGAGAAGGTCGAAGCCTGATCCAAGATTAAGTAATCCACCTAAGCATAAACATGGGGAGCAGGTTGCTGCTGGATGGCCTTCCTGGCTCTCTGCTCATGTTGGGGAAGCAATTGATGGTTGGCTCCCACGACGCGCTGACACTTTTGAGAAAATTGATAAG : ATTGGCCAAGGGACATACAGTAATGTCTACAAGGCGAGAGATACTGTTACTGGTAAAATTGTTGCTCTAAAGAAAGTGCGTTTTGACAATCTAGAACCTGAGAGTGTGAGATTCATGGCTAGAGAAATTATAATTTTGC</gDNA_template>
            <first_frame> V  R  L  I  L  L  *  L  Y  S  F  L  V  L  Q  Q  R  N  V  E  D  Y  R  H  H  I  K  L  S  L  S  Y  F  L  F  L  A  Q  I  *  S  T  Q  Q  :  V  L  *  I  L  S  *  L  W  K  L  V  G  *  S  M  R  M  L  S  Y  E  V  *  T  *  K  M  G  C  V  L  G  R  E  A  S  S  G  L  V  H  N  G  R  E  E  K  R  E  G  A  H  Y  E  K  K  S  Q  S  I  S  A  E  S  T  E  T  F  E  V  K  G  A  E  N  V  T  V  D  T  E  V  V  E  A  D  E  G  D  E  T  K  K  D  D  K  T  E  H  D  G  K  S  R  K  E  K  R  R  S  K  P  D  P  R  L  S  N  P  P  K  H  K  H  G  E  Q  V  A  A  G  W  P  S  W  L  S  A  H  V  G  E  A  I  D  G  W  L  P  R  R  A  D  T  F  E  K  I  D  K  :  I  G  Q  G  T  Y  S  N  V  Y  K  A  R  D  T  V  T  G  K  I  V  A  L  K  K  V  R  F  D  N  L  E  P  E  S  V  R  F  M  A  R  E  I  I  I  L  </first_frame>
            <second_frame>  S  D  *  F  F  Y  D  Y  T  L  F  L  S  Y  S  K  E  T  L  K  T  T  D  T  T  *  N  S  L  S  L  I  S  Y  F  W  L  R  F  D  Q  P  S  K :   C  C  R  F  *  V  D  C  G  N  W  L  V  N  P  *  E  C  *  V  M  K  C  R  P  E  R  W  G  V  F  W  V  G  K  L  H  Q  A  *  Y  T  M  A  E  R  R  K  G  K  V  H  I  M  R  R  R  V  R  A  L  A  L  N  P  L  K  L  L  R  S  R  G  L  K  M  *  L  L  T  L  K  L  W  K  P  M  K  V  M  K  L  R  R  M  T  R  R  S  M  T  E  N  L  G  K  K  R  E  G  R  S  L  I  Q  D  *  V  I  H  L  S  I  N  M  G  S  R  L  L  L  D  G  L  P  G  S  L  L  M  L  G  K  Q  L  M  V  G  S  H  D  A  L  T  L  L  R  K  L  I  R :   L  A  K  G  H  T  V  M  S  T  R  R  E  I  L  L  L  V  K  L  L  L  *  R  K  C  V  L  T  I  *  N  L  R  V  *  D  S  W  L  E  K  L  *  F  C </second_frame>
            <third_frame>   P  I  D  S  F  M  I  I  L  F  S  C  L  T  A  K  K  R  *  R  L  Q  T  P  H  K  T  L  S  L  L  F  P  I  F  G  S  D  L  I  N  P  A   : S  V  V  D  S  E  L  I  V  E  I  G  W  L  I  H  E  N  V  E  L  *  S  V  D  L  K  D  G  V  C  F  G  S  G  S  F  I  R  L  S  T  Q  W  Q  R  G  E  K  G  R  C  T  L  *  E  E  E  S  E  H  *  R  *  I  H  *  N  F  *  G  Q  G  G  *  K  C  N  C  *  H  *  S  C  G  S  R  *  R  *  *  N  *  E  G  *  Q  D  G  A  *  R  K  I  *  E  R  K  E  K  V  E  A  *  S  K  I  K  *  S  T  *  A  *  T  W  G  A  G  C  C  W  M  A  F  L  A  L  C  S  C  W  G  S  N  *  W  L  A  P  T  T  R  *  H  F  *  E  N  *  *   : D  W  P  R  D  I  Q  *  C  L  Q  G  E  R  Y  C  Y  W  *  N  C  C  S  K  E  S  A  F  *  Q  S  R  T  *  E  C  E  I  H  G  *  R  N  Y  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8905" stop="9309"/>
                    <exon start="9422" stop="9559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGCVLGREASSGLVHNGREEKREGAHYEKKSQSISAESTETFEVKGAENVTVDTEVVEADEGDETKKDDKTEHDGKSRKEKRRSKPDPRLSNPPKHKHGEQVAAGWPSWLSAHVGEAIDGWLPRRADTFEKIDKIGQGTYSNVYKARDTVTGKIVALKKVRFDNLEPESVRFMAREIIIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9899" PGL_stop="13218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9899" e_stop="10137"/>
            <exon e_start="10855" e_stop="11082"/>
            <exon e_start="13121" e_stop="13218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.130" e_score="0.975"/>
          <exon-intron don_prob="0.994" acc_prob="0.904" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="9899" e_stop="10137" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.130">
            <gDNA_intron_boundary i_start="10138" i_stop="10854" i_length="717"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="10855" e_stop="11082" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.904">
            <gDNA_intron_boundary i_start="11083" i_stop="13120" i_length="2038"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13121" e_stop="13218" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9899" stop="10137"/>
              <exon start="10855" stop="11082"/>
              <exon start="13121" stop="13218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCAAATCTTCTTCTTGACAATTCTGGCATTCTCAGAATTGCTGACTTTGGACTGGCTACTATTTTCGATCCTTCTCATAAGCATCAAATGACTAGTCGAGTGGTTACTCTCTGGTATAGACCACCAGAGCTGCTTCTAGGTGCTACTGATTATGGTGTAGGTATTGATTTATGGAGTGCAGGTTGCATCTTAGCTGAGTTATTGGCTGGAAAACCCATTATGCCTGGTCGGACTGAG : GTAGAACAATTGCATAAGATATATAAACTCTGTGGTTCACCATCAGAGGAGTACTGGAAGAAGTCCAAGTTGCCGAATGCAACACTTTTCAAGCCTCGAGAACCCTACAGACGATGCATTAAGGAGACTTTTAAAGATTTTCCTCAGTCTTCACTTCCCCTGATTGATACATTACTTGCAATTGATCCCGCAGAACGCAAGACGGCTACTGATGCATTACGAAGTGAA : TTTTTCAATACAGAGCCATATGCCTGTGATCCCTCTAGTCTTCCAAAATATCCTCCAACCAAGGAAATGGATGCCAAACGGCGGGATGATGAAGCTAG</gDNA_template>
            <first_frame> G  Q  I  F  F  L  T  I  L  A  F  S  E  L  L  T  L  D  W  L  L  F  S  I  L  L  I  S  I  K  *  L  V  E  W  L  L  S  G  I  D  H  Q  S  C  F  *  V  L  L  I  M  V  *  V  L  I  Y  G  V  Q  V  A  S  *  L  S  Y  W  L  E  N  P  L  C  L  V  G  L  R :   *  N  N  C  I  R  Y  I  N  S  V  V  H  H  Q  R  S  T  G  R  S  P  S  C  R  M  Q  H  F  S  S  L  E  N  P  T  D  D  A  L  R  R  L  L  K  I  F  L  S  L  H  F  P  *  L  I  H  Y  L  Q  L  I  P  Q  N  A  R  R  L  L  M  H  Y  E  V  N :   F  S  I  Q  S  H  M  P  V  I  P  L  V  F  Q  N  I  L  Q  P  R  K  W  M  P  N  G  G  M  M  K  L  </first_frame>
            <second_frame>  V  K  S  S  S  *  Q  F  W  H  S  Q  N  C  *  L  W  T  G  Y  Y  F  R  S  F  S  *  A  S  N  D  *  S  S  G  Y  S  L  V  *  T  T  R  A  A  S  R  C  Y  *  L  W  C  R  Y  *  F  M  E  C  R  L  H  L  S  *  V  I  G  W  K  T  H  Y  A  W  S  D  *   : G  R  T  I  A  *  D  I  *  T  L  W  F  T  I  R  G  V  L  E  E  V  Q  V  A  E  C  N  T  F  Q  A  S  R  T  L  Q  T  M  H  *  G  D  F  *  R  F  S  S  V  F  T  S  P  D  *  Y  I  T  C  N  *  S  R  R  T  Q  D  G  Y  *  C  I  T  K  *   : I  F  Q  Y  R  A  I  C  L  *  S  L  *  S  S  K  I  S  S  N  Q  G  N  G  C  Q  T  A  G  *  *  S  * </second_frame>
            <third_frame>   S  N  L  L  L  D  N  S  G  I  L  R  I  A  D  F  G  L  A  T  I  F  D  P  S  H  K  H  Q  M  T  S  R  V  V  T  L  W  Y  R  P  P  E  L  L  L  G  A  T  D  Y  G  V  G  I  D  L  W  S  A  G  C  I  L  A  E  L  L  A  G  K  P  I  M  P  G  R  T  E  :  V  E  Q  L  H  K  I  Y  K  L  C  G  S  P  S  E  E  Y  W  K  K  S  K  L  P  N  A  T  L  F  K  P  R  E  P  Y  R  R  C  I  K  E  T  F  K  D  F  P  Q  S  S  L  P  L  I  D  T  L  L  A  I  D  P  A  E  R  K  T  A  T  D  A  L  R  S  E  :  F  F  N  T  E  P  Y  A  C  D  P  S  S  L  P  K  Y  P  P  T  K  E  M  D  A  K  R  R  D  D  E  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9901" stop="10137"/>
                    <exon start="10855" stop="11082"/>
                    <exon start="13121" stop="13216"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLLLDNSGILRIADFGLATIFDPSHKHQMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKSKLPNATLFKPREPYRRCIKETFKDFPQSSLPLIDTLLAIDPAERKTATDALRSEFFNTEPYACDPSSLPKYPPTKEMDAKRRDDEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23969" PGL_stop="23248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23969" e_stop="23248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="23969" e_stop="23248" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23969" stop="23248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAACAACTCAATTATGATATCACTAATTGTAATTGTATAACAGTATGTAGAATGTAGAGTTAAACACAATTACATTACACAAATTAAAAATCCCAAGAAAAACCCTAAATTCCAAGAAACACAGTAGCAATCACTCAAAAATTTCAATTACCAGTAATTAAAGATCATCTTCCATCCTCAAATACTCTCCAATATCAGCTTGATGAAGCACTACAATTCCATTCGGATCCATTTTCCGGCAATCCTGAGTACTCTTCGCTGCAACCCCAAATCCCAATGGCACATCCGACATCGAAAACACAACCACACCATCATGATCACTAATACTCTCTGTAATCCTTCCAACTCCACCTTTCAATACATTATTTCCATAAAGAAAACTCATCTCAGACGTGGGTTTCAGCCACACTTTGTGTTTCGCGTGTGCAGCTAAGAGACCCAAGCATTGAACCGTGAGATGAAATTTACCTCCCTTGGTGAATTTCCCTAACTGGGTTCCCAGCGAAACTAAGTTATCTCGCTTTACGTTGGTTGCTCGCTTGACCAGAGATTCTGATACGTAGTAAACTCTGTTTCTCTGGAGACGAAAGCAGTAACGGCCGGGAGTGTTGTCGGTACCTTCGTGAGATGGGTTTTCCACTATGTTCTTCAGATTGTTTCCGACGAATTTGTGTAGCTTTTCGAACACCTGTGTTGTTTCTTGCTCATCTAGCGGTCGCA</gDNA_template>
            <first_frame> G  N  N  S  I  M  I  S  L  I  V  I  V  *  Q  Y  V  E  C  R  V  K  H  N  Y  I  T  Q  I  K  N  P  K  K  N  P  K  F  Q  E  T  Q  *  Q  S  L  K  N  F  N  Y  Q  *  L  K  I  I  F  H  P  Q  I  L  S  N  I  S  L  M  K  H  Y  N  S  I  R  I  H  F  P  A  I  L  S  T  L  R  C  N  P  K  S  Q  W  H  I  R  H  R  K  H  N  H  T  I  M  I  T  N  T  L  C  N  P  S  N  S  T  F  Q  Y  I  I  S  I  K  K  T  H  L  R  R  G  F  Q  P  H  F  V  F  R  V  C  S  *  E  T  Q  A  L  N  R  E  M  K  F  T  S  L  G  E  F  P  *  L  G  S  Q  R  N  *  V  I  S  L  Y  V  G  C  S  L  D  Q  R  F  *  Y  V  V  N  S  V  S  L  E  T  K  A  V  T  A  G  S  V  V  G  T  F  V  R  W  V  F  H  Y  V  L  Q  I  V  S  D  E  F  V  *  L  F  E  H  L  C  C  F  L  L  I  *  R  S   </first_frame>
            <second_frame>  V  T  T  Q  L  *  Y  H  *  L  *  L  Y  N  S  M  *  N  V  E  L  N  T  I  T  L  H  K  L  K  I  P  R  K  T  L  N  S  K  K  H  S  S  N  H  S  K  I  S  I  T  S  N  *  R  S  S  S  I  L  K  Y  S  P  I  S  A  *  *  S  T  T  I  P  F  G  S  I  F  R  Q  S  *  V  L  F  A  A  T  P  N  P  N  G  T  S  D  I  E  N  T  T  T  P  S  *  S  L  I  L  S  V  I  L  P  T  P  P  F  N  T  L  F  P  *  R  K  L  I  S  D  V  G  F  S  H  T  L  C  F  A  C  A  A  K  R  P  K  H  *  T  V  R  *  N  L  P  P  L  V  N  F  P  N  W  V  P  S  E  T  K  L  S  R  F  T  L  V  A  R  L  T  R  D  S  D  T  *  *  T  L  F  L  W  R  R  K  Q  *  R  P  G  V  L  S  V  P  S  *  D  G  F  S  T  M  F  F  R  L  F  P  T  N  L  C  S  F  S  N  T  C  V  V  S  C  S  S  S  G  R  </second_frame>
            <third_frame>   *  Q  L  N  Y  D  I  T  N  C  N  C  I  T  V  C  R  M  *  S  *  T  Q  L  H  Y  T  N  *  K  S  Q  E  K  P  *  I  P  R  N  T  V  A  I  T  Q  K  F  Q  L  P  V  I  K  D  H  L  P  S  S  N  T  L  Q  Y  Q  L  D  E  A  L  Q  F  H  S  D  P  F  S  G  N  P  E  Y  S  S  L  Q  P  Q  I  P  M  A  H  P  T  S  K  T  Q  P  H  H  H  D  H  *  Y  S  L  *  S  F  Q  L  H  L  S  I  H  Y  F  H  K  E  N  S  S  Q  T  W  V  S  A  T  L  C  V  S  R  V  Q  L  R  D  P  S  I  E  P  *  D  E  I  Y  L  P  W  *  I  S  L  T  G  F  P  A  K  L  S  Y  L  A  L  R  W  L  L  A  *  P  E  I  L  I  R  S  K  L  C  F  S  G  D  E  S  S  N  G  R  E  C  C  R  Y  L  R  E  M  G  F  P  L  C  S  S  D  C  F  R  R  I  C  V  A  F  R  T  P  V  L  F  L  A  H  L  A  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23810" stop="23535"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKIIFHPQILSNISLMKHYNSIRIHFPAILSTLRCNPKSQWHIRHRKHNHTIMITNTLCNPSNSTFQYIISIKKTHLRRGFQPHFVFRVCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23859" stop="23644"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPRNTVAITQKFQLPVIKDHLPSSNTLQYQLDEALQFHSDPFSGNPEYSSLQPQIPMAHPTSKTQPHHHDH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26018" PGL_stop="29594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26018" e_stop="26849"/>
            <exon e_start="27096" e_stop="27147"/>
            <exon e_start="28397" e_stop="28452"/>
            <exon e_start="29242" e_stop="29400"/>
            <exon e_start="29501" e_stop="29594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="26018" e_stop="26849" e_length="832"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26850" i_stop="27095" i_length="246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27096" e_stop="27147" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.691">
            <gDNA_intron_boundary i_start="27148" i_stop="28396" i_length="1249"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28397" e_stop="28452" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.921" acc_prob="0.865">
            <gDNA_intron_boundary i_start="28453" i_stop="29241" i_length="789"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29242" e_stop="29400" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.821" acc_prob="0.926">
            <gDNA_intron_boundary i_start="29401" i_stop="29500" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29501" e_stop="29594" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26018" stop="26849"/>
              <exon start="27096" stop="27147"/>
              <exon start="28397" stop="28452"/>
              <exon start="29242" stop="29400"/>
              <exon start="29501" stop="29594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAACTGCGCATTTGCTTTCTTATCTTGATAAATTGTCAAGAATTTTGTAAATTATTTTGTATTTTGGATGTTAGGTTTCAGTAGTTCAAGCAACTCCACATGTATGTGAACTCATTTTAGCCACGCATCTGATTAAAGTTTGTGGCTTTAAGCTTCTTTGATGTGATTAAAGGAGTTTTGCAATTTCAAGATTCTTTTTTTTTTGGAAAAATTAGGAATTCGTTTCTGGTTTCTTTCACTTTCACTATCAATAACTATTGTTTTTGTCTTTCCCTTTGATGGGAGTGGTGGAAAAAGTGTCTTTAAAATATGAGATATTTATCTGCTAGCTTTCTTGTGCTGTTTTCATAAAACATTACAGTATTTCTACAGAAGTTTGAAACTTTGCAGTTTGTGGCCATTTGTTGCAAACCATGGCTTCTCTTCTGCATAATTTCTGGGCAGTCCCTCGTTTTGGTCTTAGTCCGGACTATAAGCCTCACTGTATAGCTCGGTTCGCATGCTTAGCTAACAGGGACTCTACATTTTTGTCTTCAGATTCTGTTATAGTTAATGGTGTGTCCTCCATTGAAGAAAAGGAGAAAAGTAGCACAATAATTGATGTGAAAAATAGTCATCTGGCTCCAGCTATTAAGGAGAAGAACAAGGAGGATATTCAAAACAAGTTGGAAACTCTTTGGGATGATGGATATGGAACTCAAACTGTTAAGGATTATCTTGAGATAGGATCAGAGATTATTAAGCCTGATGGAGGTCCTCCGCGGTGGTTTACTCCCATATCAGCTGGCCCTCCTTTGGAAGACTCTCCTCTCCTCCTTTTTCTGCCAG : GAATGGATGGCACTGGCATGGGTCTTGTTTTGCATGAGAAGGCTCTTGGGAA : AGTTTTTCAGGTTTGGTGCTTGCATATTCCTGTGTATGATCGAACACCATTTGATG : AACTGGTGAAATTCGTCGGGAGAACTGTGAGGATGAAGCATGCTTCATCTCCAAACAAGCCAATTTATTTAGTTGGAGATTCATTTGGAGGGTGCTTGGCTCTTGCCATTGCTGCTCATAACCCTGAGATTGACCTTGTTCTGATATTAGCTAATCCAG : CAACTTCATTTGACAGGACACAACTCCAACCTTTGCTTCCTCTTCTGGAGTCTCTGCCTGATGAATTTCATGTTACAGTCCCTTATCTTCTGAG</gDNA_template>
            <first_frame> F  *  T  A  H  L  L  S  Y  L  D  K  L  S  R  I  L  *  I  I  L  Y  F  G  C  *  V  S  V  V  Q  A  T  P  H  V  C  E  L  I  L  A  T  H  L  I  K  V  C  G  F  K  L  L  *  C  D  *  R  S  F  A  I  S  R  F  F  F  F  W  K  N  *  E  F  V  S  G  F  F  H  F  H  Y  Q  *  L  L  F  L  S  F  P  L  M  G  V  V  E  K  V  S  L  K  Y  E  I  F  I  C  *  L  S  C  A  V  F  I  K  H  Y  S  I  S  T  E  V  *  N  F  A  V  C  G  H  L  L  Q  T  M  A  S  L  L  H  N  F  W  A  V  P  R  F  G  L  S  P  D  Y  K  P  H  C  I  A  R  F  A  C  L  A  N  R  D  S  T  F  L  S  S  D  S  V  I  V  N  G  V  S  S  I  E  E  K  E  K  S  S  T  I  I  D  V  K  N  S  H  L  A  P  A  I  K  E  K  N  K  E  D  I  Q  N  K  L  E  T  L  W  D  D  G  Y  G  T  Q  T  V  K  D  Y  L  E  I  G  S  E  I  I  K  P  D  G  G  P  P  R  W  F  T  P  I  S  A  G  P  P  L  E  D  S  P  L  L  L  F  L  P   : G  M  D  G  T  G  M  G  L  V  L  H  E  K  A  L  G  K :   V  F  Q  V  W  C  L  H  I  P  V  Y  D  R  T  P  F  D   : E  L  V  K  F  V  G  R  T  V  R  M  K  H  A  S  S  P  N  K  P  I  Y  L  V  G  D  S  F  G  G  C  L  A  L  A  I  A  A  H  N  P  E  I  D  L  V  L  I  L  A  N  P   : A  T  S  F  D  R  T  Q  L  Q  P  L  L  P  L  L  E  S  L  P  D  E  F  H  V  T  V  P  Y  L  L   </first_frame>
            <second_frame>  F  E  L  R  I  C  F  L  I  L  I  N  C  Q  E  F  C  K  L  F  C  I  L  D  V  R  F  Q  *  F  K  Q  L  H  M  Y  V  N  S  F  *  P  R  I  *  L  K  F  V  A  L  S  F  F  D  V  I  K  G  V  L  Q  F  Q  D  S  F  F  F  G  K  I  R  N  S  F  L  V  S  F  T  F  T  I  N  N  Y  C  F  C  L  S  L  *  W  E  W  W  K  K  C  L  *  N  M  R  Y  L  S  A  S  F  L  V  L  F  S  *  N  I  T  V  F  L  Q  K  F  E  T  L  Q  F  V  A  I  C  C  K  P  W  L  L  F  C  I  I  S  G  Q  S  L  V  L  V  L  V  R  T  I  S  L  T  V  *  L  G  S  H  A  *  L  T  G  T  L  H  F  C  L  Q  I  L  L  *  L  M  V  C  P  P  L  K  K  R  R  K  V  A  Q  *  L  M  *  K  I  V  I  W  L  Q  L  L  R  R  R  T  R  R  I  F  K  T  S  W  K  L  F  G  M  M  D  M  E  L  K  L  L  R  I  I  L  R  *  D  Q  R  L  L  S  L  M  E  V  L  R  G  G  L  L  P  Y  Q  L  A  L  L  W  K  T  L  L  S  S  F  F  C  Q  :  E  W  M  A  L  A  W  V  L  F  C  M  R  R  L  L  G   : K  F  F  R  F  G  A  C  I  F  L  C  M  I  E  H  H  L  M  :  N  W  *  N  S  S  G  E  L  *  G  *  S  M  L  H  L  Q  T  S  Q  F  I  *  L  E  I  H  L  E  G  A  W  L  L  P  L  L  L  I  T  L  R  L  T  L  F  *  Y  *  L  I  Q  :  Q  L  H  L  T  G  H  N  S  N  L  C  F  L  F  W  S  L  C  L  M  N  F  M  L  Q  S  L  I  F  *  </second_frame>
            <third_frame>   L  N  C  A  F  A  F  L  S  *  *  I  V  K  N  F  V  N  Y  F  V  F  W  M  L  G  F  S  S  S  S  N  S  T  C  M  *  T  H  F  S  H  A  S  D  *  S  L  W  L  *  A  S  L  M  *  L  K  E  F  C  N  F  K  I  L  F  F  L  E  K  L  G  I  R  F  W  F  L  S  L  S  L  S  I  T  I  V  F  V  F  P  F  D  G  S  G  G  K  S  V  F  K  I  *  D  I  Y  L  L  A  F  L  C  C  F  H  K  T  L  Q  Y  F  Y  R  S  L  K  L  C  S  L  W  P  F  V  A  N  H  G  F  S  S  A  *  F  L  G  S  P  S  F  W  S  *  S  G  L  *  A  S  L  Y  S  S  V  R  M  L  S  *  Q  G  L  Y  I  F  V  F  R  F  C  Y  S  *  W  C  V  L  H  *  R  K  G  E  K  *  H  N  N  *  C  E  K  *  S  S  G  S  S  Y  *  G  E  E  Q  G  G  Y  S  K  Q  V  G  N  S  L  G  *  W  I  W  N  S  N  C  *  G  L  S  *  D  R  I  R  D  Y  *  A  *  W  R  S  S  A  V  V  Y  S  H  I  S  W  P  S  F  G  R  L  S  S  P  P  F  S  A  R :   N  G  W  H  W  H  G  S  C  F  A  *  E  G  S  W  E  :  S  F  S  G  L  V  L  A  Y  S  C  V  *  S  N  T  I  *  * :   T  G  E  I  R  R  E  N  C  E  D  E  A  C  F  I  S  K  Q  A  N  L  F  S  W  R  F  I  W  R  V  L  G  S  C  H  C  C  S  *  P  *  D  *  P  C  S  D  I  S  *  S  S :   N  F  I  *  Q  D  T  T  P  T  F  A  S  S  S  G  V  S  A  *  *  I  S  C  Y  S  P  L  S  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26402" stop="26849"/>
                    <exon start="27096" stop="27147"/>
                    <exon start="28397" stop="28452"/>
                    <exon start="29242" stop="29400"/>
                    <exon start="29501" stop="29592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFAVCGHLLQTMASLLHNFWAVPRFGLSPDYKPHCIARFACLANRDSTFLSSDSVIVNGVSSIEEKEKSSTIIDVKNSHLAPAIKEKNKEDIQNKLETLWDDGYGTQTVKDYLEIGSEIIKPDGGPPRWFTPISAGPPLEDSPLLLFLPGMDGTGMGLVLHEKALGKVFQVWCLHIPVYDRTPFDELVKFVGRTVRMKHASSPNKPIYLVGDSFGGCLALAIAAHNPEIDLVLILANPATSFDRTQLQPLLPLLESLPDEFHVTVPYLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37741" PGL_stop="41141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37741" e_stop="37825"/>
            <exon e_start="39196" e_stop="39309"/>
            <exon e_start="40490" e_stop="40587"/>
            <exon e_start="40709" e_stop="41141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="37741" e_stop="37825" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37826" i_stop="39195" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39196" e_stop="39309" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39310" i_stop="40489" i_length="1180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40490" e_stop="40587" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40588" i_stop="40708" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="40709" e_stop="41141" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37741" stop="37825"/>
              <exon start="39196" stop="39309"/>
              <exon start="40490" stop="40587"/>
              <exon start="40709" stop="41141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCAGCAACTTTTTTAAGTTGCTTGCAACAAAGTCACATGTTCTGTTGTATCCTGGTGGTGCCCGTGAGGCCTTACATCGTAAG : GGAGAAGAGTACAAGGTGATATGGCCTGACCAACCAGAATTCATCAGAATGGCTGCAAAATTTGGTGCGACAATTGTGCCATTTGGGGTTGTAGGAGAAGATGATATAGCACAG : TTAGTTCTCGACTATGACGACCTAAAAAGTATACCTATATTGGGTGATCGGATAAGGAGTGAGAACGAAGAGGCAGCCAGGAGGGGCTTAGCAGTCAG : GGCGGACATGGACGGGGAGATTGCCAACCAAATGTTGTATATCCCTGGCCTTTTACCTAAGATACCCGGTCGTTTTTACTTCTTTTTTGGGAAACCAATTCATACAAAGGGAAGGCAAGACCTGGTGAAAGATAGAGAAAAAGCAAGAGAATTATACTTGCAGGTAAAATCTGAAGTTCAAAATAACATGAATTATTTGCTTAAGAAAAGAGAGGAGGATCCTTACCGGAACTTCATCGATCGAACCATGTATAGAGCATTTTCTGCCACTTCTGGTGATGTCCCAACATTTGATTTTTAGATGACCAGTTAGAAGTCCGATTATTATTTTTTTGGGTAAAGGCTCTTACCCATTGTTTAATTCTATGTTGTAATTTTTTAAAAAATATTTATGTTCCAATATGAGCAAGCTTTCCTTCCACCAATAACTAAG</gDNA_template>
            <first_frame> C  Q  Q  L  F  *  V  A  C  N  K  V  T  C  S  V  V  S  W  W  C  P  *  G  L  T  S  *   : G  R  R  V  Q  G  D  M  A  *  P  T  R  I  H  Q  N  G  C  K  I  W  C  D  N  C  A  I  W  G  C  R  R  R  *  Y  S  T   : V  S  S  R  L  *  R  P  K  K  Y  T  Y  I  G  *  S  D  K  E  *  E  R  R  G  S  Q  E  G  L  S  S  Q  :  G  G  H  G  R  G  D  C  Q  P  N  V  V  Y  P  W  P  F  T  *  D  T  R  S  F  L  L  L  F  W  E  T  N  S  Y  K  G  K  A  R  P  G  E  R  *  R  K  S  K  R  I  I  L  A  G  K  I  *  S  S  K  *  H  E  L  F  A  *  E  K  R  G  G  S  L  P  E  L  H  R  S  N  H  V  *  S  I  F  C  H  F  W  *  C  P  N  I  *  F  L  D  D  Q  L  E  V  R  L  L  F  F  W  V  K  A  L  T  H  C  L  I  L  C  C  N  F  L  K  N  I  Y  V  P  I  *  A  S  F  P  S  T  N  N  *  </first_frame>
            <second_frame>  A  S  N  F  F  K  L  L  A  T  K  S  H  V  L  L  Y  P  G  G  A  R  E  A  L  H  R  K  :  G  E  E  Y  K  V  I  W  P  D  Q  P  E  F  I  R  M  A  A  K  F  G  A  T  I  V  P  F  G  V  V  G  E  D  D  I  A  Q  :  L  V  L  D  Y  D  D  L  K  S  I  P  I  L  G  D  R  I  R  S  E  N  E  E  A  A  R  R  G  L  A  V  R :   A  D  M  D  G  E  I  A  N  Q  M  L  Y  I  P  G  L  L  P  K  I  P  G  R  F  Y  F  F  F  G  K  P  I  H  T  K  G  R  Q  D  L  V  K  D  R  E  K  A  R  E  L  Y  L  Q  V  K  S  E  V  Q  N  N  M  N  Y  L  L  K  K  R  E  E  D  P  Y  R  N  F  I  D  R  T  M  Y  R  A  F  S  A  T  S  G  D  V  P  T  F  D  F  *  M  T  S  *  K  S  D  Y  Y  F  F  G  *  R  L  L  P  I  V  *  F  Y  V  V  I  F  *  K  I  F  M  F  Q  Y  E  Q  A  F  L  P  P  I  T  K </second_frame>
            <third_frame>   P  A  T  F  L  S  C  L  Q  Q  S  H  M  F  C  C  I  L  V  V  P  V  R  P  Y  I  V  R :   E  K  S  T  R  *  Y  G  L  T  N  Q  N  S  S  E  W  L  Q  N  L  V  R  Q  L  C  H  L  G  L  *  E  K  M  I  *  H  S :   *  F  S  T  M  T  T  *  K  V  Y  L  Y  W  V  I  G  *  G  V  R  T  K  R  Q  P  G  G  A  *  Q  S   : G  R  T  W  T  G  R  L  P  T  K  C  C  I  S  L  A  F  Y  L  R  Y  P  V  V  F  T  S  F  L  G  N  Q  F  I  Q  R  E  G  K  T  W  *  K  I  E  K  K  Q  E  N  Y  T  C  R  *  N  L  K  F  K  I  T  *  I  I  C  L  R  K  E  R  R  I  L  T  G  T  S  S  I  E  P  C  I  E  H  F  L  P  L  L  V  M  S  Q  H  L  I  F  R  *  P  V  R  S  P  I  I  I  F  L  G  K  G  S  Y  P  L  F  N  S  M  L  *  F  F  K  K  Y  L  C  S  N  M  S  K  L  S  F  H  Q  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37742" stop="37825"/>
                    <exon start="39196" stop="39309"/>
                    <exon start="40490" stop="40587"/>
                    <exon start="40709" stop="41009"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASNFFKLLATKSHVLLYPGGAREALHRKGEEYKVIWPDQPEFIRMAAKFGATIVPFGVVGEDDIAQLVLDYDDLKSIPILGDRIRSENEEAARRGLAVRADMDGEIANQMLYIPGLLPKIPGRFYFFFGKPIHTKGRQDLVKDREKARELYLQVKSEVQNNMNYLLKKREEDPYRNFIDRTMYRAFSATSGDVPTFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="42034" PGL_stop="43858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42034" e_stop="43226"/>
            <exon e_start="43532" e_stop="43858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.495" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="42034" e_stop="43226" e_length="1193"/>
          </exon>
          <intron i_serial="1" don_prob="0.495" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43227" i_stop="43531" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="43532" e_stop="43858" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42034" stop="43226"/>
              <exon start="43532" stop="43858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAACATAAAGAACCAGTTATATTCTAAATAATAGTTATGGCTAGTTTTAGCAAGGGTGGAAGTTTTAACAGCTATAGTGACTACCCTGATCATGTTTGTCGCCCTGTGATTGTTGGACATAGTGTTGGGGGCTTCATGGTGAGAGCTCAAAGAGTTGTTGAAGTTCGTCGTAGTTATGGAATACCCCTGAATGGTCATGTAGATGAGTACGATGTGCATGAAGAATGGGACGATGATAGTCCAAGGAAAGTCAGTGACTTCTTCCATAAAGTTCATAATGAAGCTAGTCGACCAACTCATTCCACTCTTTTGAGCCCTCCAAAGTTGATCACTGTAAGGCCTAGTTGGACAAGTGAAGATCATGACTCTCCAAAGTATAGGGAGCATCACGATTTTAGTGGCAGCCCTCTTCGTAATAAATTTGAAGGGTTTCACCTTCAAGGTAGTCGAGGATCAAGTCCGTATAAGTACAAGAATGATGGTTATGGCCACTCCATGGGTTCTCCCAAGGCTGGCCATGTGAAGGACTATGGGGTCAACAACACATGGGATTCACCACCAAGATCAAGGTTAACTGATGACGATTGGGATGGCAGGAGAGATCATGATGATTATGGCAAGCCAAAATTCAATGGAGGTTACAAGATAACTAGTGCTCCACTTAGCCAGGCCACAAATGATATAGGCAAGATCCTTGGGGTAGGTAGTAAACCTTTGGCTCCTCCTACTTATGCACCAAAATCACATTTTCCAGCATCTTACTCAACTCCACATATAAAAGAAAGTTACCCTGAGAGAACTCAAGGTGAAAAGCCTCTGGCTTCACCTGTTTCAACCCAATCATCCTATTATCCAACGTCAAATCCGATAACCGAAAGGAAAGAAAGTTACCCTGAACCAACAAAAGGAACGAAGCCTCTGTCTTACCCTGTTTATACAAAACAACCATACTCACCAACTTCAAACTACCCTGAAACAAATCAGGGACCAAGGCCTCTGTTTTCCCCTGGCTACACGCAACAATCGCATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTACCCTGAAACAGCACACGGCACAAAGCCTCTGTTTACCCCTGGCTATACACAACAATCACATTCACCAACTTCAAACCCGATACCTCAAAGGAAAGAGAACTATCCTGAAACAGAACATG : AGCGTGAAGCCTTTGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTACCCAGAAAGAACACACGATACAAACCCTATGTTTTCCCCTGTTTCTACACAACAATCAACTGAAAATCCGACCTCTCAAAACAACGAAAGTCACCCAAAGAAGAAAAAAGGTTGGACATCTCTGTTTTCCTCTCCTTCTAAGCAACAACCACACCCTCCAACATCACACTCAACACCTGATATGAAACAAAGCTACCCTGATCATGAAACTCAAGGTTTCCACCCCTCATTTACCCCTTCT</gDNA_template>
            <first_frame> K  K  T  *  R  T  S  Y  I  L  N  N  S  Y  G  *  F  *  Q  G  W  K  F  *  Q  L  *  *  L  P  *  S  C  L  S  P  C  D  C  W  T  *  C  W  G  L  H  G  E  S  S  K  S  C  *  S  S  S  *  L  W  N  T  P  E  W  S  C  R  *  V  R  C  A  *  R  M  G  R  *  *  S  K  E  S  Q  *  L  L  P  *  S  S  *  *  S  *  S  T  N  S  F  H  S  F  E  P  S  K  V  D  H  C  K  A  *  L  D  K  *  R  S  *  L  S  K  V  *  G  A  S  R  F  *  W  Q  P  S  S  *  *  I  *  R  V  S  P  S  R  *  S  R  I  K  S  V  *  V  Q  E  *  W  L  W  P  L  H  G  F  S  Q  G  W  P  C  E  G  L  W  G  Q  Q  H  M  G  F  T  T  K  I  K  V  N  *  *  R  L  G  W  Q  E  R  S  *  *  L  W  Q  A  K  I  Q  W  R  L  Q  D  N  *  C  S  T  *  P  G  H  K  *  Y  R  Q  D  P  W  G  R  *  *  T  F  G  S  S  Y  L  C  T  K  I  T  F  S  S  I  L  L  N  S  T  Y  K  R  K  L  P  *  E  N  S  R  *  K  A  S  G  F  T  C  F  N  P  I  I  L  L  S  N  V  K  S  D  N  R  K  E  R  K  L  P  *  T  N  K  R  N  E  A  S  V  L  P  C  L  Y  K  T  T  I  L  T  N  F  K  L  P  *  N  K  S  G  T  K  A  S  V  F  P  W  L  H  A  T  I  A  F  T  N  F  K  P  D  T  S  K  E  R  E  L  P  *  N  S  T  R  H  K  A  S  V  Y  P  W  L  Y  T  T  I  T  F  T  N  F  K  P  D  T  S  K  E  R  E  L  S  *  N  R  T  * :   A  *  S  L  C  F  P  L  V  I  N  H  N  H  I  H  Q  L  Q  T  Q  H  L  K  G  K  K  A  T  Q  K  E  H  T  I  Q  T  L  C  F  P  L  F  L  H  N  N  Q  L  K  I  R  P  L  K  T  T  K  V  T  Q  R  R  K  K  V  G  H  L  C  F  P  L  L  L  S  N  N  H  T  L  Q  H  H  T  Q  H  L  I  *  N  K  A  T  L  I  M  K  L  K  V  S  T  P  H  L  P  L   </first_frame>
            <second_frame>  K  K  H  K  E  P  V  I  F  *  I  I  V  M  A  S  F  S  K  G  G  S  F  N  S  Y  S  D  Y  P  D  H  V  C  R  P  V  I  V  G  H  S  V  G  G  F  M  V  R  A  Q  R  V  V  E  V  R  R  S  Y  G  I  P  L  N  G  H  V  D  E  Y  D  V  H  E  E  W  D  D  D  S  P  R  K  V  S  D  F  F  H  K  V  H  N  E  A  S  R  P  T  H  S  T  L  L  S  P  P  K  L  I  T  V  R  P  S  W  T  S  E  D  H  D  S  P  K  Y  R  E  H  H  D  F  S  G  S  P  L  R  N  K  F  E  G  F  H  L  Q  G  S  R  G  S  S  P  Y  K  Y  K  N  D  G  Y  G  H  S  M  G  S  P  K  A  G  H  V  K  D  Y  G  V  N  N  T  W  D  S  P  P  R  S  R  L  T  D  D  D  W  D  G  R  R  D  H  D  D  Y  G  K  P  K  F  N  G  G  Y  K  I  T  S  A  P  L  S  Q  A  T  N  D  I  G  K  I  L  G  V  G  S  K  P  L  A  P  P  T  Y  A  P  K  S  H  F  P  A  S  Y  S  T  P  H  I  K  E  S  Y  P  E  R  T  Q  G  E  K  P  L  A  S  P  V  S  T  Q  S  S  Y  Y  P  T  S  N  P  I  T  E  R  K  E  S  Y  P  E  P  T  K  G  T  K  P  L  S  Y  P  V  Y  T  K  Q  P  Y  S  P  T  S  N  Y  P  E  T  N  Q  G  P  R  P  L  F  S  P  G  Y  T  Q  Q  S  H  S  P  T  S  N  P  I  P  Q  R  K  E  N  Y  P  E  T  A  H  G  T  K  P  L  F  T  P  G  Y  T  Q  Q  S  H  S  P  T  S  N  P  I  P  Q  R  K  E  N  Y  P  E  T  E  H   : E  R  E  A  F  V  F  H  W  L  *  T  T  I  T  F  T  N  F  K  P  N  T  S  K  E  R  K  L  P  R  K  N  T  R  Y  K  P  Y  V  F  P  C  F  Y  T  T  I  N  *  K  S  D  L  S  K  Q  R  K  S  P  K  E  E  K  R  L  D  I  S  V  F  L  S  F  *  A  T  T  T  P  S  N  I  T  L  N  T  *  Y  E  T  K  L  P  *  S  *  N  S  R  F  P  P  L  I  Y  P  F  </second_frame>
            <third_frame>   K  N  I  K  N  Q  L  Y  S  K  *  *  L  W  L  V  L  A  R  V  E  V  L  T  A  I  V  T  T  L  I  M  F  V  A  L  *  L  L  D  I  V  L  G  A  S  W  *  E  L  K  E  L  L  K  F  V  V  V  M  E  Y  P  *  M  V  M  *  M  S  T  M  C  M  K  N  G  T  M  I  V  Q  G  K  S  V  T  S  S  I  K  F  I  M  K  L  V  D  Q  L  I  P  L  F  *  A  L  Q  S  *  S  L  *  G  L  V  G  Q  V  K  I  M  T  L  Q  S  I  G  S  I  T  I  L  V  A  A  L  F  V  I  N  L  K  G  F  T  F  K  V  V  E  D  Q  V  R  I  S  T  R  M  M  V  M  A  T  P  W  V  L  P  R  L  A  M  *  R  T  M  G  S  T  T  H  G  I  H  H  Q  D  Q  G  *  L  M  T  I  G  M  A  G  E  I  M  M  I  M  A  S  Q  N  S  M  E  V  T  R  *  L  V  L  H  L  A  R  P  Q  M  I  *  A  R  S  L  G  *  V  V  N  L  W  L  L  L  L  M  H  Q  N  H  I  F  Q  H  L  T  Q  L  H  I  *  K  K  V  T  L  R  E  L  K  V  K  S  L  W  L  H  L  F  Q  P  N  H  P  I  I  Q  R  Q  I  R  *  P  K  G  K  K  V  T  L  N  Q  Q  K  E  R  S  L  C  L  T  L  F  I  Q  N  N  H  T  H  Q  L  Q  T  T  L  K  Q  I  R  D  Q  G  L  C  F  P  L  A  T  R  N  N  R  I  H  Q  L  Q  T  R  Y  L  K  G  K  R  T  T  L  K  Q  H  T  A  Q  S  L  C  L  P  L  A  I  H  N  N  H  I  H  Q  L  Q  T  R  Y  L  K  G  K  R  T  I  L  K  Q  N  M  :  S  V  K  P  L  F  S  T  G  Y  K  P  Q  S  H  S  P  T  S  N  P  T  P  Q  R  K  E  S  Y  P  E  R  T  H  D  T  N  P  M  F  S  P  V  S  T  Q  Q  S  T  E  N  P  T  S  Q  N  N  E  S  H  P  K  K  K  K  G  W  T  S  L  F  S  S  P  S  K  Q  Q  P  H  P  P  T  S  H  S  T  P  D  M  K  Q  S  Y  P  D  H  E  T  Q  G  F  H  P  S  F  T  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42065" stop="43226"/>
                    <exon start="43532" stop="43563"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVMASFSKGGSFNSYSDYPDHVCRPVIVGHSVGGFMVRAQRVVEVRRSYGIPLNGHVDEYDVHEEWDDDSPRKVSDFFHKVHNEASRPTHSTLLSPPKLITVRPSWTSEDHDSPKYREHHDFSGSPLRNKFEGFHLQGSRGSSPYKYKNDGYGHSMGSPKAGHVKDYGVNNTWDSPPRSRLTDDDWDGRRDHDDYGKPKFNGGYKITSAPLSQATNDIGKILGVGSKPLAPPTYAPKSHFPASYSTPHIKESYPERTQGEKPLASPVSTQSSYYPTSNPITERKESYPEPTKGTKPLSYPVYTKQPYSPTSNYPETNQGPRPLFSPGYTQQSHSPTSNPIPQRKENYPETAHGTKPLFTPGYTQQSHSPTSNPIPQRKENYPETEHEREAFVFHWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43539" stop="43802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCFPLVINHNHIHQLQTQHLKGKKATQKEHTIQTLCFPLFLHNNQLKIRPLKTTKVTQRRKKVGHLCFPLLLSNNHTLQHHTQHLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43254" e_stop="43381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="43254" e_stop="43381" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43254" stop="43381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAACCACAATTTCATTCACCAACTTCAAACCCAACACCTCAAAGGAAAGAAAGCTATCCTGAAACAGAACACGGCGTAAAGCCTTGGTTTTCCACTGGTTATAAACCACAATCACATTCACCAACT</gDNA_template>
            <first_frame> I  N  H  N  F  I  H  Q  L  Q  T  Q  H  L  K  G  K  K  A  I  L  K  Q  N  T  A  *  S  L  G  F  P  L  V  I  N  H  N  H  I  H  Q   </first_frame>
            <second_frame>  *  T  T  I  S  F  T  N  F  K  P  N  T  S  K  E  R  K  L  S  *  N  R  T  R  R  K  A  L  V  F  H  W  L  *  T  T  I  T  F  T  N  </second_frame>
            <third_frame>   K  P  Q  F  H  S  P  T  S  N  P  T  P  Q  R  K  E  S  Y  P  E  T  E  H  G  V  K  P  W  F  S  T  G  Y  K  P  Q  S  H  S  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0123A07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45470" PGL_stop="46200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45470" e_stop="46200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="45470" e_stop="46200" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45470" stop="46200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTAAACACCACTAATATTCATACCTCCAATACTATAGTTTGTTAGTTTCCAGATTTAACTGCCATGTCTGATCAAATTGTCATGTCAATTGATCCAAATGTCGACCCTTATGGATGTTTGGGCATTGTTCGTAACAGTGACGACTCTATCACACGTCCACAAATTCCTCGTTCATTTTTCAGTACTATTCCTGATAATGATTTCTCCGTCTTTATAAAAGATTTTGTCATCAATTCCACTAAAGACATGTGGGCTCGTATAGTCACCCCTCGTGAAGTACTAAACTCGGAAATTAAACTCCCTCTTGTAGTATATTTTCACGGTGGAGGATTCGTAATGGCAGTTACTGTAGACACACCAATCTTACAAAAGTTTTACACAACACTCGCAGTCGAAATTCCAGCGATAATTGTATCAGTCGATTATCGATACGCTCCGGAAAATCGACTCCCGGCAGCTTACGATGATTGCGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAACACGCTGATTTGTCCAAATGCTTTCTATTGGGCACTAGTGCTGGTGGCAACATAGCCTATAACGTAGGGCTACGTGTAGCTGAAGTTAGTGAATGCCTTAAGCCTTTAGAAATCAAAGGGTTGATTTTACATCATGCATTTTTTGGTGGGAATGAAAGGACGAAATCGGAATTAAGATTAGTTCGTGATAAGATATTGCCTCTTA</gDNA_template>
            <first_frame> N  I  K  H  H  *  Y  S  Y  L  Q  Y  Y  S  L  L  V  S  R  F  N  C  H  V  *  S  N  C  H  V  N  *  S  K  C  R  P  L  W  M  F  G  H  C  S  *  Q  *  R  L  Y  H  T  S  T  N  S  S  F  I  F  Q  Y  Y  S  *  *  *  F  L  R  L  Y  K  R  F  C  H  Q  F  H  *  R  H  V  G  S  Y  S  H  P  S  *  S  T  K  L  G  N  *  T  P  S  C  S  I  F  S  R  W  R  I  R  N  G  S  Y  C  R  H  T  N  L  T  K  V  L  H  N  T  R  S  R  N  S  S  D  N  C  I  S  R  L  S  I  R  S  G  K  S  T  P  G  S  L  R  *  L  R  G  I  V  I  L  D  Q  K  Y  P  *  R  A  V  E  K  T  R  *  F  V  Q  M  L  S  I  G  H  *  C  W  W  Q  H  S  L  *  R  R  A  T  C  S  *  S  *  *  M  P  *  A  F  R  N  Q  R  V  D  F  T  S  C  I  F  W  W  E  *  K  D  E  I  G  I  K  I  S  S  *  *  D  I  A  S   </first_frame>
            <second_frame>  I  L  N  T  T  N  I  H  T  S  N  T  I  V  C  *  F  P  D  L  T  A  M  S  D  Q  I  V  M  S  I  D  P  N  V  D  P  Y  G  C  L  G  I  V  R  N  S  D  D  S  I  T  R  P  Q  I  P  R  S  F  F  S  T  I  P  D  N  D  F  S  V  F  I  K  D  F  V  I  N  S  T  K  D  M  W  A  R  I  V  T  P  R  E  V  L  N  S  E  I  K  L  P  L  V  V  Y  F  H  G  G  G  F  V  M  A  V  T  V  D  T  P  I  L  Q  K  F  Y  T  T  L  A  V  E  I  P  A  I  I  V  S  V  D  Y  R  Y  A  P  E  N  R  L  P  A  A  Y  D  D  C  V  E  S  L  Y  W  I  K  N  T  P  N  E  L  L  K  K  H  A  D  L  S  K  C  F  L  L  G  T  S  A  G  G  N  I  A  Y  N  V  G  L  R  V  A  E  V  S  E  C  L  K  P  L  E  I  K  G  L  I  L  H  H  A  F  F  G  G  N  E  R  T  K  S  E  L  R  L  V  R  D  K  I  L  P  L  </second_frame>
            <third_frame>   Y  *  T  P  L  I  F  I  P  P  I  L  *  F  V  S  F  Q  I  *  L  P  C  L  I  K  L  S  C  Q  L  I  Q  M  S  T  L  M  D  V  W  A  L  F  V  T  V  T  T  L  S  H  V  H  K  F  L  V  H  F  S  V  L  F  L  I  M  I  S  P  S  L  *  K  I  L  S  S  I  P  L  K  T  C  G  L  V  *  S  P  L  V  K  Y  *  T  R  K  L  N  S  L  L  *  Y  I  F  T  V  E  D  S  *  W  Q  L  L  *  T  H  Q  S  Y  K  S  F  T  Q  H  S  Q  S  K  F  Q  R  *  L  Y  Q  S  I  I  D  T  L  R  K  I  D  S  R  Q  L  T  M  I  A  W  N  R  Y  I  G  S  K  I  P  L  T  S  C  *  K  N  T  L  I  C  P  N  A  F  Y  W  A  L  V  L  V  A  T  *  P  I  T  *  G  Y  V  *  L  K  L  V  N  A  L  S  L  *  K  S  K  G  *  F  Y  I  M  H  F  L  V  G  M  K  G  R  N  R  N  *  D  *  F  V  I  R  Y  C  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45519" stop="46199"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPDLTAMSDQIVMSIDPNVDPYGCLGIVRNSDDSITRPQIPRSFFSTIPDNDFSVFIKDFVINSTKDMWARIVTPREVLNSEIKLPLVVYFHGGGFVMAVTVDTPILQKFYTTLAVEIPAIIVSVDYRYAPENRLPAAYDDCVESLYWIKNTPNELLKKHADLSKCFLLGTSAGGNIAYNVGLRVAEVSECLKPLEIKGLILHHAFFGGNERTKSELRLVRDKILPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47742" PGL_stop="48719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47742" e_stop="48719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="47742" e_stop="48719" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47742" stop="48719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTCATGGTGGAGGATTTGTAATGGCAATTACTGTAAACACACCGATTTTACAAAAATTTTGTGCAACACTTGCGGTTGAAATTCCAGCAATAATTGTATCGGTTGATTACCGATACGCCCCCGAAAATCGACTCCCAGCAGCGTATGATGATTGTGTGGAATCGTTATATTGGATCAAAAATACCCCTAACGAGCTGTTGAAAAAATATGCTGATTTTTCAAAGTGTTTTCTATTGGGCACTAGTTCTGGTGGCAACATAGCGTACAACGTAGGACTACGTGTAGCTGGAGTTGGTGAAAATCTTAAGCCTTTAGAAATCAAAGGGTTAATTTTATATCATAGTCTTTTTGGTGGAAATGAGAGGACAAAATCGGAATTAAGATTAGCTCACGATAAGATGCTGCCCCTTAATGTGAGTGATATTATGTGGGAGCTAGGGTTGCCTATTGGTAGCGATCGCGATCATCCATATTGTAATCCGATGGTGGAGATTCGATCAAATGAAAATTTGTTTGATCAAGTGAAAATACAAGGTTGGAAGATTCTGATCATTGACTGTGATGGTGATCCTTTGGTCGATCGACAGATTGAGTTTTCAAAGATGTTGAAGGCAAAAGGTGTGCAAGTTGTGGATTGTTTTAGTGAAGGAGGATTTCATGGTTGTGAGTATTTTGATGGCATGAAGTTGAAGGAATTGACCCTTGTTGTAAAGGAATTTATGAGAAGTAATTAATTAAAGTACTTGTGGCAAGTGATCTTTAATTTGAAAGAAATATTTGTAACAATTATGAAAATAGGAGTCCACTCTCAGAGCTATACTCTGAGATAAAAGAAGAAGCACTGTTTAGATTTCGAGTTCTACAGTTTCAAATAAGTTGTGAAGTATCGTCATATATATATCTCAAATGTACTACTTAGAGCAGATATACCCTTTGTTTAAAAAGTGAAGCAAATATATCCTTGTTCTACTTGT</gDNA_template>
            <first_frame> Y  F  H  G  G  G  F  V  M  A  I  T  V  N  T  P  I  L  Q  K  F  C  A  T  L  A  V  E  I  P  A  I  I  V  S  V  D  Y  R  Y  A  P  E  N  R  L  P  A  A  Y  D  D  C  V  E  S  L  Y  W  I  K  N  T  P  N  E  L  L  K  K  Y  A  D  F  S  K  C  F  L  L  G  T  S  S  G  G  N  I  A  Y  N  V  G  L  R  V  A  G  V  G  E  N  L  K  P  L  E  I  K  G  L  I  L  Y  H  S  L  F  G  G  N  E  R  T  K  S  E  L  R  L  A  H  D  K  M  L  P  L  N  V  S  D  I  M  W  E  L  G  L  P  I  G  S  D  R  D  H  P  Y  C  N  P  M  V  E  I  R  S  N  E  N  L  F  D  Q  V  K  I  Q  G  W  K  I  L  I  I  D  C  D  G  D  P  L  V  D  R  Q  I  E  F  S  K  M  L  K  A  K  G  V  Q  V  V  D  C  F  S  E  G  G  F  H  G  C  E  Y  F  D  G  M  K  L  K  E  L  T  L  V  V  K  E  F  M  R  S  N  *  L  K  Y  L  W  Q  V  I  F  N  L  K  E  I  F  V  T  I  M  K  I  G  V  H  S  Q  S  Y  T  L  R  *  K  K  K  H  C  L  D  F  E  F  Y  S  F  K  *  V  V  K  Y  R  H  I  Y  I  S  N  V  L  L  R  A  D  I  P  F  V  *  K  V  K  Q  I  Y  P  C  S  T  C </first_frame>
            <second_frame>  I  F  M  V  E  D  L  *  W  Q  L  L  *  T  H  R  F  Y  K  N  F  V  Q  H  L  R  L  K  F  Q  Q  *  L  Y  R  L  I  T  D  T  P  P  K  I  D  S  Q  Q  R  M  M  I  V  W  N  R  Y  I  G  S  K  I  P  L  T  S  C  *  K  N  M  L  I  F  Q  S  V  F  Y  W  A  L  V  L  V  A  T  *  R  T  T  *  D  Y  V  *  L  E  L  V  K  I  L  S  L  *  K  S  K  G  *  F  Y  I  I  V  F  L  V  E  M  R  G  Q  N  R  N  *  D  *  L  T  I  R  C  C  P  L  M  *  V  I  L  C  G  S  *  G  C  L  L  V  A  I  A  I  I  H  I  V  I  R  W  W  R  F  D  Q  M  K  I  C  L  I  K  *  K  Y  K  V  G  R  F  *  S  L  T  V  M  V  I  L  W  S  I  D  R  L  S  F  Q  R  C  *  R  Q  K  V  C  K  L  W  I  V  L  V  K  E  D  F  M  V  V  S  I  L  M  A  *  S  *  R  N  *  P  L  L  *  R  N  L  *  E  V  I  N  *  S  T  C  G  K  *  S  L  I  *  K  K  Y  L  *  Q  L  *  K  *  E  S  T  L  R  A  I  L  *  D  K  R  R  S  T  V  *  I  S  S  S  T  V  S  N  K  L  *  S  I  V  I  Y  I  S  Q  M  Y  Y  L  E  Q  I  Y  P  L  F  K  K  *  S  K  Y  I  L  V  L  L   </second_frame>
            <third_frame>   F  S  W  W  R  I  C  N  G  N  Y  C  K  H  T  D  F  T  K  I  L  C  N  T  C  G  *  N  S  S  N  N  C  I  G  *  L  P  I  R  P  R  K  S  T  P  S  S  V  *  *  L  C  G  I  V  I  L  D  Q  K  Y  P  *  R  A  V  E  K  I  C  *  F  F  K  V  F  S  I  G  H  *  F  W  W  Q  H  S  V  Q  R  R  T  T  C  S  W  S  W  *  K  S  *  A  F  R  N  Q  R  V  N  F  I  S  *  S  F  W  W  K  *  E  D  K  I  G  I  K  I  S  S  R  *  D  A  A  P  *  C  E  *  Y  Y  V  G  A  R  V  A  Y  W  *  R  S  R  S  S  I  L  *  S  D  G  G  D  S  I  K  *  K  F  V  *  S  S  E  N  T  R  L  E  D  S  D  H  *  L  *  W  *  S  F  G  R  S  T  D  *  V  F  K  D  V  E  G  K  R  C  A  S  C  G  L  F  *  *  R  R  I  S  W  L  *  V  F  *  W  H  E  V  E  G  I  D  P  C  C  K  G  I  Y  E  K  *  L  I  K  V  L  V  A  S  D  L  *  F  E  R  N  I  C  N  N  Y  E  N  R  S  P  L  S  E  L  Y  S  E  I  K  E  E  A  L  F  R  F  R  V  L  Q  F  Q  I  S  C  E  V  S  S  Y  I  Y  L  K  C  T  T  *  S  R  Y  T  L  C  L  K  S  E  A  N  I  S  L  F  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47742" stop="48479"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFHGGGFVMAITVNTPILQKFCATLAVEIPAIIVSVDYRYAPENRLPAAYDDCVESLYWIKNTPNELLKKYADFSKCFLLGTSSGGNIAYNVGLRVAGVGENLKPLEIKGLILYHSLFGGNERTKSELRLAHDKMLPLNVSDIMWELGLPIGSDRDHPYCNPMVEIRSNENLFDQVKIQGWKILIIDCDGDPLVDRQIEFSKMLKAKGVQVVDCFSEGGFHGCEYFDGMKLKELTLVVKEFMRSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="49840" PGL_stop="48910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49840" e_stop="48910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="49840" e_stop="48910" e_length="931"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49840" stop="48910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTCCTTGTGATATCAGCTTATAGACACACTTCCACAAATTTAGTTGATTGTTGCCAAAAGTTCTTTTCCTCTATGCAATCCTCATATAACGTAAACCCCACCTCGGAGCATTATGCAGGTTTTGTAGGTGTCTTAGGCTATTGGGGTCTGCTCGAAGAAGCAGAAAAGATAATTAATGCAATGCCGTTTGAACCAAAGGCTTCTGTTTGGCATGCTTTGCTTGATGGTTGTAGGTTACATGTGAATGCTATCATTGGAAAAAGGGCCATGAAGAATATACTTTCCATTGTCCCACAGGATCCTTCTACTTTCATACTAAAGTCAAATCTTTACTCAGCATCTGGAAGATGGCAGTGTTCGGAACTTGTTAGGGCGGAGATGAGGGAGAAGGGTATCCAAAAATACCAGGACGCAGCTGGATCATATTTGGCGACAAGGTTCACTCCTTCTTTGCTAGAGACAAATTGCATTCACAGTCAAAAGACATATACAGTGGCTTACAAATACTTATTTTGGAGTGTCTGAAAGCTGGATATGTACCTGATACAAGTCTTGTGCTTCATGAAGTAGAGGAGCATCAGAAGAAAGACTTCTTGTTCTACCACAGTGCAAAACTATCTGTAACCTTTGGGCTTCTTATGACTAGACCTGGAAAACCTGTTCGCGTTATGAAGAATGTGCTTCTCTGTGGTGACTGCCATACATTCTTCAAATATGTTTCTGTTATCACCAAGAGAGATATACACGTAAGAGACGCTTCAGGTTTTCATCATTTTGTAAATGGTAAATGCTCGTGCGGGGATAATTGGTGCTGAGAAAAGAGATATTTTGATATTTTTAGCTGTAGTCTTACATTGTTGTTTTCAAGATTTTTGTAGCTAATATTTTTAAACCTGTTGTTAGATATACAACAATTAGAATGTATTTA</gDNA_template>
            <first_frame> C  V  L  V  I  S  A  Y  R  H  T  S  T  N  L  V  D  C  C  Q  K  F  F  S  S  M  Q  S  S  Y  N  V  N  P  T  S  E  H  Y  A  G  F  V  G  V  L  G  Y  W  G  L  L  E  E  A  E  K  I  I  N  A  M  P  F  E  P  K  A  S  V  W  H  A  L  L  D  G  C  R  L  H  V  N  A  I  I  G  K  R  A  M  K  N  I  L  S  I  V  P  Q  D  P  S  T  F  I  L  K  S  N  L  Y  S  A  S  G  R  W  Q  C  S  E  L  V  R  A  E  M  R  E  K  G  I  Q  K  Y  Q  D  A  A  G  S  Y  L  A  T  R  F  T  P  S  L  L  E  T  N  C  I  H  S  Q  K  T  Y  T  V  A  Y  K  Y  L  F  W  S  V  *  K  L  D  M  Y  L  I  Q  V  L  C  F  M  K  *  R  S  I  R  R  K  T  S  C  S  T  T  V  Q  N  Y  L  *  P  L  G  F  L  *  L  D  L  E  N  L  F  A  L  *  R  M  C  F  S  V  V  T  A  I  H  S  S  N  M  F  L  L  S  P  R  E  I  Y  T  *  E  T  L  Q  V  F  I  I  L  *  M  V  N  A  R  A  G  I  I  G  A  E  K  R  D  I  L  I  F  L  A  V  V  L  H  C  C  F  Q  D  F  C  S  *  Y  F  *  T  C  C  *  I  Y  N  N  *  N  V  F  </first_frame>
            <second_frame>  V  S  L  *  Y  Q  L  I  D  T  L  P  Q  I  *  L  I  V  A  K  S  S  F  P  L  C  N  P  H  I  T  *  T  P  P  R  S  I  M  Q  V  L  *  V  S  *  A  I  G  V  C  S  K  K  Q  K  R  *  L  M  Q  C  R  L  N  Q  R  L  L  F  G  M  L  C  L  M  V  V  G  Y  M  *  M  L  S  L  E  K  G  P  *  R  I  Y  F  P  L  S  H  R  I  L  L  L  S  Y  *  S  Q  I  F  T  Q  H  L  E  D  G  S  V  R  N  L  L  G  R  R  *  G  R  R  V  S  K  N  T  R  T  Q  L  D  H  I  W  R  Q  G  S  L  L  L  C  *  R  Q  I  A  F  T  V  K  R  H  I  Q  W  L  T  N  T  Y  F  G  V  S  E  S  W  I  C  T  *  Y  K  S  C  A  S  *  S  R  G  A  S  E  E  R  L  L  V  L  P  Q  C  K  T  I  C  N  L  W  A  S  Y  D  *  T  W  K  T  C  S  R  Y  E  E  C  A  S  L  W  *  L  P  Y  I  L  Q  I  C  F  C  Y  H  Q  E  R  Y  T  R  K  R  R  F  R  F  S  S  F  C  K  W  *  M  L  V  R  G  *  L  V  L  R  K  E  I  F  *  Y  F  *  L  *  S  Y  I  V  V  F  K  I  F  V  A  N  I  F  K  P  V  V  R  Y  T  T  I  R  M  Y  L </second_frame>
            <third_frame>   C  P  C  D  I  S  L  *  T  H  F  H  K  F  S  *  L  L  P  K  V  L  F  L  Y  A  I  L  I  *  R  K  P  H  L  G  A  L  C  R  F  C  R  C  L  R  L  L  G  S  A  R  R  S  R  K  D  N  *  C  N  A  V  *  T  K  G  F  C  L  A  C  F  A  *  W  L  *  V  T  C  E  C  Y  H  W  K  K  G  H  E  E  Y  T  F  H  C  P  T  G  S  F  Y  F  H  T  K  V  K  S  L  L  S  I  W  K  M  A  V  F  G  T  C  *  G  G  D  E  G  E  G  Y  P  K  I  P  G  R  S  W  I  I  F  G  D  K  V  H  S  F  F  A  R  D  K  L  H  S  Q  S  K  D  I  Y  S  G  L  Q  I  L  I  L  E  C  L  K  A  G  Y  V  P  D  T  S  L  V  L  H  E  V  E  E  H  Q  K  K  D  F  L  F  Y  H  S  A  K  L  S  V  T  F  G  L  L  M  T  R  P  G  K  P  V  R  V  M  K  N  V  L  L  C  G  D  C  H  T  F  F  K  Y  V  S  V  I  T  K  R  D  I  H  V  R  D  A  S  G  F  H  H  F  V  N  G  K  C  S  C  G  D  N  W  C  *  E  K  R  Y  F  D  I  F  S  C  S  L  T  L  L  F  S  R  F  L  *  L  I  F  L  N  L  L  L  D  I  Q  Q  L  E  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49840" stop="49313"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVLVISAYRHTSTNLVDCCQKFFSSMQSSYNVNPTSEHYAGFVGVLGYWGLLEEAEKIINAMPFEPKASVWHALLDGCRLHVNAIIGKRAMKNILSIVPQDPSTFILKSNLYSASGRWQCSELVRAEMREKGIQKYQDAAGSYLATRFTPSLLETNCIHSQKTYTVAYKYLFWSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49466" stop="49023"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGDEGEGYPKIPGRSWIIFGDKVHSFFARDKLHSQSKDIYSGLQILILECLKAGYVPDTSLVLHEVEEHQKKDFLFYHSAKLSVTFGLLMTRPGKPVRVMKNVLLCGDCHTFFKYVSVITKRDIHVRDASGFHHFVNGKCSCGDNWC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="52421" PGL_stop="52815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52421" e_stop="52815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="52421" e_stop="52815" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52421" stop="52815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATCATAGAATCAATCTTCCCATTTCATGCTGTAAGAACTGTATAATAGGTGTTATCCTTTTTCAACCATCAATGAACAAGCAGAATTATACAAAATGTCGATGAGTAAGATAGAGGAGATGCAATTACACCGGTCAAATATAGATGTAAAATTTTCTACCAACTGCAGAAGTCGAACATACCATCACAAAGAATTAACTCTGGTAGTACTAATATACATGTAACTGGGGAGCTTCACGCCACCACAACAAATTGAGAAGTCAAAAACCAGAAGGACCCTTCTATATTTGGAAATGGAAAAGGAAAGCAATGCTTCGCTCTGGGCATTACTATAAACCCTTCTCTGGAAGATGCATTAATAACAAAATGCTTCAAAGTGTTGCCATGGCCAGCC</gDNA_template>
            <first_frame> G  S  *  N  Q  S  S  H  F  M  L  *  E  L  Y  N  R  C  Y  P  F  S  T  I  N  E  Q  A  E  L  Y  K  M  S  M  S  K  I  E  E  M  Q  L  H  R  S  N  I  D  V  K  F  S  T  N  C  R  S  R  T  Y  H  H  K  E  L  T  L  V  V  L  I  Y  M  *  L  G  S  F  T  P  P  Q  Q  I  E  K  S  K  T  R  R  T  L  L  Y  L  E  M  E  K  E  S  N  A  S  L  W  A  L  L  *  T  L  L  W  K  M  H  *  *  Q  N  A  S  K  C  C  H  G  Q   </first_frame>
            <second_frame>  D  H  R  I  N  L  P  I  S  C  C  K  N  C  I  I  G  V  I  L  F  Q  P  S  M  N  K  Q  N  Y  T  K  C  R  *  V  R  *  R  R  C  N  Y  T  G  Q  I  *  M  *  N  F  L  P  T  A  E  V  E  H  T  I  T  K  N  *  L  W  *  Y  *  Y  T  C  N  W  G  A  S  R  H  H  N  K  L  R  S  Q  K  P  E  G  P  F  Y  I  W  K  W  K  R  K  A  M  L  R  S  G  H  Y  Y  K  P  F  S  G  R  C  I  N  N  K  M  L  Q  S  V  A  M  A  S  </second_frame>
            <third_frame>   I  I  E  S  I  F  P  F  H  A  V  R  T  V  *  *  V  L  S  F  F  N  H  Q  *  T  S  R  I  I  Q  N  V  D  E  *  D  R  G  D  A  I  T  P  V  K  Y  R  C  K  I  F  Y  Q  L  Q  K  S  N  I  P  S  Q  R  I  N  S  G  S  T  N  I  H  V  T  G  E  L  H  A  T  T  T  N  *  E  V  K  N  Q  K  D  P  S  I  F  G  N  G  K  G  K  Q  C  F  A  L  G  I  T  I  N  P  S  L  E  D  A  L  I  T  K  C  F  K  V  L  P  W  P  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0123A07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="54266" PGL_stop="52450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54266" e_stop="53695"/>
            <exon e_start="53182" e_stop="52450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54266" e_stop="53695" e_length="572"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53694" i_stop="53183" i_length="512"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="53182" e_stop="52450" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54266" stop="53752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53764" stop="53695"/>
              <exon start="53182" stop="52450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564171" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGAGTGCAGCTTTAAAGTTAAGAGGAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTACTGATCCTAGTAATCTAAGTATGGAGGTCTTGTGCGCACTTTACTTTATCTGGCAACAATATGTCATTTGCAGTGTAGAAATATAAAGTCAGATATCCGTGTCTCGTGAAAAAGATATTTGTAGCATACAGGACTTGCTTGTCAACTTGTCAATGCTTTAGCTTTACATTGTTATTGTACCATGTTTGGATGCAATTGATCTTTTGGAAATCTTATTCTTCTCTCATTGGTTTTACAGTTTCAACAATGTAACTATAGAGGCCATTGATATTTGTAAATTCATTTTTTCCATTTCTAATTAGAAATAACAATATTAAATATTCACTTCTGGGTTCCATCTGATGCTTGTGAAATGGTGACAAGCTGTTCATTCCATCTCATCATGCAGGCTAAGAGCCGCTAATAAAGCTACAGGAGATGGTGCTAAGAGAGTACGCCATCGTGAACGAACCCGTGCTGGCCCTGCTCCAGATGCCAATGCAGAAAATCAAGCTAATATCGAC : AGGCGTCGCCTAATCACTCACGCAAATGCAAAGAGCAAGAGTGAGAAGTTTCCCCCACCACACCAGGACGGAGGACTTGGCGTTCCCTTGGGTGCTTCACATCACATTGATCCGTCCCTTGTCCCTCCGGATGTGCCATTCAGTTCGACCTCATTCACATATTCAAAAGAACCTGTCCAGAATTGGTCAGGCCCTTTAGTAGAGCCTGCTTCAGCTGGTGGAAGGCGGAAGAAGCATACTGCAGGCGATGCCAAAAAGCATTTGTCAAAGAGAAGATGAGAAGCAACCTTGTTTTGGGTAGCAGCAGAGCGAGAGCTTCAGATGAGTGTTTCTATGGCCTATTCTGGAAATAACATTAAAAGTGGGGGGCTGGCCATGGCAACACTTTGAAGCATTTTGTTATTAATGCATCTTCCAGAGAAGGGTTTATAGTAATGCCCAGAGCGAAGCATTGCTTTCCTTTTCCATTTCCAAATATAGAAGGGTCCTTCTGGTTTTTGACTTCTCAATTTGTTGTGGTGGCGTGAAGCTCCCCAGTTACATGTATATTAGTACTACCAGAGTTAATTCTTTGTGATGGTATGTTCGACTTCTGCAGTTGGTAGAAAATTTTACATCTATATTTGACCGGTGTAATTGCATCTCCTCTATCTTACTCATCGACATTTTGTATAATTCTGCTTGTTCATTGATGGTTGAAAAAGGATAACACCTATTATACAGTTCTTACAGC</gDNA_template>
            <first_frame> G  E  C  S  F  K  V  K  R  N  A  I  C  V  S  K  L  E  E  R  I  V  L  L  I  L  V  I  *  V  W  R  S  C  A  H  F  T  L  S  G  N  N  M  S  F  A  V  *  K  Y  K  V  R  Y  P  C  L  V  K  K  I  F  V  A  Y  R  T  C  L  S  T  C  Q  C  F  S  F  T  L  L  L  Y  H  V  W  M  Q  L  I  F  W  K  S  Y  S  S  L  I  G  F  T  V  S  T  M  *  L  *  R  P  L  I  F  V  N  S  F  F  P  F  L  I  R  N  N  N  I  K  Y  S  L  L  G  S  I  *  C  L  *  N  G  D  K  L  F  I  P  S  H  H  A  G  *  E  P  L  I  K  L  Q  E  M  V  L  R  E  Y  A  I  V  N  E  P  V  L  A  L  L  Q  M  P  M  Q  K  I  K  L  I  S  T :   G  V  A  *  S  L  T  Q  M  Q  R  A  R  V  R  S  F  P  H  H  T  R  T  E  D  L  A  F  P  W  V  L  H  I  T  L  I  R  P  L  S  L  R  M  C  H  S  V  R  P  H  S  H  I  Q  K  N  L  S  R  I  G  Q  A  L  *  *  S  L  L  Q  L  V  E  G  G  R  S  I  L  Q  A  M  P  K  S  I  C  Q  R  E  D  E  K  Q  P  C  F  G  *  Q  Q  S  E  S  F  R  *  V  F  L  W  P  I  L  E  I  T  L  K  V  G  G  W  P  W  Q  H  F  E  A  F  C  Y  *  C  I  F  Q  R  R  V  Y  S  N  A  Q  S  E  A  L  L  S  F  S  I  S  K  Y  R  R  V  L  L  V  F  D  F  S  I  C  C  G  G  V  K  L  P  S  Y  M  Y  I  S  T  T  R  V  N  S  L  *  W  Y  V  R  L  L  Q  L  V  E  N  F  T  S  I  F  D  R  C  N  C  I  S  S  I  L  L  I  D  I  L  Y  N  S  A  C  S  L  M  V  E  K  G  *  H  L  L  Y  S  S  Y  S </first_frame>
            <second_frame>  V  S  A  A  L  K  L  R  G  M  P  S  V  L  A  N  *  K  R  E  *  C  Y  *  S  *  *  S  K  Y  G  G  L  V  R  T  L  L  Y  L  A  T  I  C  H  L  Q  C  R  N  I  K  S  D  I  R  V  S  *  K  R  Y  L  *  H  T  G  L  A  C  Q  L  V  N  A  L  A  L  H  C  Y  C  T  M  F  G  C  N  *  S  F  G  N  L  I  L  L  S  L  V  L  Q  F  Q  Q  C  N  Y  R  G  H  *  Y  L  *  I  H  F  F  H  F  *  L  E  I  T  I  L  N  I  H  F  W  V  P  S  D  A  C  E  M  V  T  S  C  S  F  H  L  I  M  Q  A  K  S  R  *  *  S  Y  R  R  W  C  *  E  S  T  P  S  *  T  N  P  C  W  P  C  S  R  C  Q  C  R  K  S  S  *  Y  R   : Q  A  S  P  N  H  S  R  K  C  K  E  Q  E  *  E  V  S  P  T  T  P  G  R  R  T  W  R  S  L  G  C  F  T  S  H  *  S  V  P  C  P  S  G  C  A  I  Q  F  D  L  I  H  I  F  K  R  T  C  P  E  L  V  R  P  F  S  R  A  C  F  S  W  W  K  A  E  E  A  Y  C  R  R  C  Q  K  A  F  V  K  E  K  M  R  S  N  L  V  L  G  S  S  R  A  R  A  S  D  E  C  F  Y  G  L  F  W  K  *  H  *  K  W  G  A  G  H  G  N  T  L  K  H  F  V  I  N  A  S  S  R  E  G  F  I  V  M  P  R  A  K  H  C  F  P  F  P  F  P  N  I  E  G  S  F  W  F  L  T  S  Q  F  V  V  V  A  *  S  S  P  V  T  C  I  L  V  L  P  E  L  I  L  C  D  G  M  F  D  F  C  S  W  *  K  I  L  H  L  Y  L  T  G  V  I  A  S  P  L  S  Y  S  S  T  F  C  I  I  L  L  V  H  *  W  L  K  K  D  N  T  Y  Y  T  V  L  T   </second_frame>
            <third_frame>   *  V  Q  L  *  S  *  E  E  C  H  L  C  *  Q  T  R  R  E  N  S  V  T  D  P  S  N  L  S  M  E  V  L  C  A  L  Y  F  I  W  Q  Q  Y  V  I  C  S  V  E  I  *  S  Q  I  S  V  S  R  E  K  D  I  C  S  I  Q  D  L  L  V  N  L  S  M  L  *  L  Y  I  V  I  V  P  C  L  D  A  I  D  L  L  E  I  L  F  F  S  H  W  F  Y  S  F  N  N  V  T  I  E  A  I  D  I  C  K  F  I  F  S  I  S  N  *  K  *  Q  Y  *  I  F  T  S  G  F  H  L  M  L  V  K  W  *  Q  A  V  H  S  I  S  S  C  R  L  R  A  A  N  K  A  T  G  D  G  A  K  R  V  R  H  R  E  R  T  R  A  G  P  A  P  D  A  N  A  E  N  Q  A  N  I  D  :  R  R  R  L  I  T  H  A  N  A  K  S  K  S  E  K  F  P  P  P  H  Q  D  G  G  L  G  V  P  L  G  A  S  H  H  I  D  P  S  L  V  P  P  D  V  P  F  S  S  T  S  F  T  Y  S  K  E  P  V  Q  N  W  S  G  P  L  V  E  P  A  S  A  G  G  R  R  K  K  H  T  A  G  D  A  K  K  H  L  S  K  R  R  *  E  A  T  L  F  W  V  A  A  E  R  E  L  Q  M  S  V  S  M  A  Y  S  G  N  N  I  K  S  G  G  L  A  M  A  T  L  *  S  I  L  L  L  M  H  L  P  E  K  G  L  *  *  C  P  E  R  S  I  A  F  L  F  H  F  Q  I  *  K  G  P  S  G  F  *  L  L  N  L  L  W  W  R  E  A  P  Q  L  H  V  Y  *  Y  Y  Q  S  *  F  F  V  M  V  C  S  T  S  A  V  G  R  K  F  Y  I  Y  I  *  P  V  *  L  H  L  L  Y  L  T  H  R  H  F  V  *  F  C  L  F  I  D  G  *  K  R  I  T  P  I  I  Q  F  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0123A07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53838" stop="53695"/>
                    <exon start="53182" stop="52904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAVHSISSCRLRAANKATGDGAKRVRHRERTRAGPAPDANAENQANIDRRRLITHANAKSKSEKFPPPHQDGGLGVPLGASHHIDPSLVPPDVPFSSTSFTYSKEPVQNWSGPLVEPASAGGRRKKHTAGDAKKHLSKRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 27448 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2111 bytes was the average size of a spliced alignment
$ 17792 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1617 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:34:37
-->
