<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:37:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541516" ref_strand="+" ref_description="SGN-E541516 [TUS-62-F15](-)">
      <seq>tcatcaaaaaaaatccattttgaacccaaatgctctctctatcactatattgtttttcaaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7051" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6751" g_stop="6471" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="391" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="510" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4208" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="820" r_length="310" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E541516" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6751" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAATCTGGCT</genome_strand>
        <mrna_strand>TCATCAAAAAAAATCCATTTTGAACCCAAATGCTCTCTCTATCACTATATTGTTTTTCAAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352100" ref_strand="+" ref_description="SGN-E352100 [cTOS-13-J2]">
      <seq>tcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaactttttttcgactccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5218" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4918" g_stop="4835" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4517" g_stop="4208" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="394" r_length="310" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E352100" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4918" e_stop="4835"/>
          <exon e_start="4517" e_stop="4208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAATCTGGCT</genome_strand>
        <mrna_strand>TCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTTCGACTCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351845" ref_strand="+" ref_description="SGN-E351845 [cTOS-8-E20]">
      <seq>cgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="6916" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6616" g_stop="6471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="256" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="375" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4214" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="679" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E351845" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6616" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAAT</genome_strand>
        <mrna_strand>CGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733094" ref_strand="+" ref_description="SGN-E733094 [LB03DH01]">
      <seq>cgatactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="6990" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6691" g_stop="6471" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="331" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="450" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4215" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="753" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E733094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6691" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAA</genome_strand>
        <mrna_strand>CGATACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371386" ref_strand="+" ref_description="SGN-E371386 [TUS-27-M11](-)">
      <seq>tttgtggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttttggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacaaagggcttggaaagatcaaaagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="6933" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6633" g_stop="6471" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="391" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="693" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="714"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E371386" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6633" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>TTTGT-GGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTTTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAAAGGGCTTGGAAAGATCAAAAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370595" ref_strand="+" ref_description="SGN-E370595 [TUS-27-M16](-)">
      <seq>gttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacaaagggcttggaaagatcaaaagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="6930" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6630" g_stop="6471" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="270" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="389" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="691" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="712"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E370595" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6630" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>GTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAAAGGGCTTGGAAAGATCAAAAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355249" ref_strand="+" ref_description="SGN-E355249 [cTOS-18-O8]">
      <seq>cctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5452" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5153" g_stop="5043" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="230" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="532" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="545"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E355249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5153" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>CCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715289" ref_strand="+" ref_description="SGN-E715289 [FB13DD12]">
      <seq>cactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5461" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="121" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="240" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="542" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="557"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E715289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304377" ref_strand="+" ref_description="SGN-E304377 [cLEX-12-J24]">
      <seq>gttaaccctgaccctgaaacattgcaaatgataacccttgcggctagacagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5399" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5099" g_stop="5043" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="176" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="478" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="490"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E304377" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5099" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>GTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCGGCTAGACAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350287" ref_strand="+" ref_description="SGN-E350287 [cTOS-4-J12]">
      <seq>tcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5218" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4918" g_stop="4835" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="386" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E350287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4918" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>TCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227240" ref_strand="+" ref_description="SGN-E227240 [cLEL-30-D9](-)">
      <seq>ccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5183" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4883" g_stop="4835" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="351" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="369"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E227240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4883" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>CCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227602" ref_strand="+" ref_description="SGN-E227602 [cLEL-30-D9](-)">
      <seq>ccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5183" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4883" g_stop="4835" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4517" g_stop="4216" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="351" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="370"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E227602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4883" e_stop="4835"/>
          <exon e_start="4517" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>CCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282265" ref_strand="+" ref_description="SGN-E282265 [cLES-4-K22]">
      <seq>agctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaaacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="4701" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4401" g_stop="4216" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="187" polyA_stop="197"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E282265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4401" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</genome_strand>
        <mrna_strand>AGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714268" ref_strand="+" ref_description="SGN-E714268 [FB10DH06]">
      <seq>tatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattanacttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaactcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7012" stop="3918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6712" g_stop="6471" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="352" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="471" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4218" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="771" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E714268" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6712" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTT</genome_strand>
        <mrna_strand>TATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTANACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226186" ref_strand="+" ref_description="SGN-E226186 [cLEL-31-A8](-)">
      <seq>aagggttattatgggcagtgtaagcatctatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcaaaagactaatttttcaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttctgttttttactaagcttggtgtcggattaagcttctatcttatcgtgaacattgaacatgttgatgtgtgtattgtgtaccatcatgttgaacctctgtaattcctgtcactatggattgctgcagtaaataaacttttttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="4819" stop="3924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4520" g_stop="4224" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="312"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E226186" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4520" e_stop="4224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAA</genome_strand>
        <mrna_strand>AAGGGTTATTATGGGCAGTGTAAGCATCTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAAAAGACTAATTTTTCAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAGCTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211279" ref_strand="+" ref_description="SGN-E211279 [cLEC-70-I12]">
      <seq>actacttttccttcttcttcatcaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacnatgtgcggaactcccttactggcaaaagctaaaggcttttatgttaaattagtcgcttctgtttttactaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7069" stop="4051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6769" g_stop="6471" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="408" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="527" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4351" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="692" r_length="165" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211279" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6769" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTG</genome_strand>
        <mrna_strand>ACTACTTTTCCTTCTTCTTCATC-AAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACNATGTGCGGAACTCCCTTACTGGC-AAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTG-TTTTTACTAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541518" ref_strand="+" ref_description="SGN-E541518 [TUS-62-F15]">
      <seq>taaaagtgggttgacatgtggtagcaaatacagtgacagatcaacatcgcactacttttccttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaaactaaaggcttttatgttaaattagtcgcttctgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7119" stop="4061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6819" g_stop="6471" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="459" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="578" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4361" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="735" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E541518" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6819" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTGGGTTGACATGTGGTAGCAAATACAGTGACAGATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTT</genome_strand>
        <mrna_strand>TAAAAGTGGGTTGACATGTGGTAGCAAATACAGTGACAGATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAACTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349033" ref_strand="+" ref_description="SGN-E349033 [cTOF-29-J12]">
      <seq>atcgcactacttttccttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggnncagtgtaagcaactatgtggtgaataatgctacgtgccctgttactggntgtgaagaatgcagaagactaattttacaatgtgcggaactncttaactggcaaaaagctaaaggcttttatgttaaattagtcgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7074" stop="4069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6774" g_stop="6471" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="414" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="533" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4369" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="685" r_length="152" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E349033" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6774" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGG--CAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACT-GTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTC</genome_strand>
        <mrna_strand>ATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGNNCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGGNTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTNCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371387" ref_strand="+" ref_description="SGN-E371387 [TUS-27-M11]">
      <seq>attggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattntacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7003" stop="4070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6703" g_stop="6471" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="343" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="462" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4370" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="610" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E371387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6703" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTT</genome_strand>
        <mrna_strand>ATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTNTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370596" ref_strand="+" ref_description="SGN-E370596 [TUS-27-M16]">
      <seq>attggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggcttttatgttaaattagtcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7003" stop="4070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6703" g_stop="6471" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="343" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="462" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4370" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="610" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E370596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6703" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTT</genome_strand>
        <mrna_strand>ATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335210" ref_strand="+" ref_description="SGN-E335210 [cTOE-1-C9]">
      <seq>ttgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcagaagactaattttacaatgtgcggaactccttaactggcaaaaagctaaaggctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7022" stop="4088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6722" g_stop="6471" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="362" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="481" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4388" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="611" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E335210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6722" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTT</genome_strand>
        <mrna_strand>TTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341155" ref_strand="+" ref_description="SGN-E341155 [cTOE-22-F4]">
      <seq>ttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgttgtgaagaatgcaaaagactaattttacaatgtgcggaactccttaactggcaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7058" stop="4098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6758" g_stop="6471" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="398" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="517" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4398" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="637" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E341155" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6758" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCT</genome_strand>
        <mrna_strand>TTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAAAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213843" ref_strand="+" ref_description="SGN-E213843 [cLEC-76-H17]">
      <seq>tcgcactacttttccttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttactgntgtgaagaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7073" stop="4146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6773" g_stop="6471" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="413" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="532" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="604" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213843" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6773" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGC</genome_strand>
        <mrna_strand>TCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGNTGTGAAGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304106" ref_strand="+" ref_description="SGN-E304106 [cLEX-6-P5]">
      <seq>ctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatcaagagggttattatgggcagtgtaagcaactatgtggtgaataatgctacgtgccctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7013" stop="4160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6713" g_stop="6471" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="353" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4835" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="472" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4517" g_stop="4460" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="530" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E304106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6713" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4835"/>
          <exon e_start="4517" e_stop="4460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAGGTCTGATCTTTTTCTAGAATTCCTTTTGCAATTGAATATCCTGTTGTATATCAAATTTCCTATCAGTTACTTCGCTGTTTTTTCTTTTGCAACTATTGCGGAGAACTGAAGCTTTGGTTGCATTTATTCCTTGACAAAGCTACTAGATTCGATGTGTATTTACGTAGCATGAGTGAACTTTGAATCTGTCTGCAGATATTACTCGAGTGAAATTTCATAAATATCTCATAATCATTTAGCAATTTTCATTACTACGTCTGCTCGAAATAAAGGGAATAGTCTAACTTATAGTTCTTCCTCCTTTTGCATCTTTACAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACT</genome_strand>
        <mrna_strand>CTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG.............................................................................................................................................................................................................................................................................................................................GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228512" ref_strand="+" ref_description="SGN-E228512 [cLED-3-D12]">
      <seq>tatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtttggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7006" stop="4539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6706" g_stop="6471" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="346" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4839" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="461" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E228512" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6706" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCA</genome_strand>
        <mrna_strand>TATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTTTGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247064" ref_strand="+" ref_description="SGN-E247064 [cLEF-41-L3]">
      <seq>tatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7006" stop="4540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6706" g_stop="6471" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="346" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4840" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="460" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E247064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6706" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATC</genome_strand>
        <mrna_strand>TATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271405" ref_strand="+" ref_description="SGN-E271405 [cLEM-5-I18]">
      <seq>attggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaacagagggcttggaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7003" stop="4541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6703" g_stop="6471" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="343" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4841" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="456" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E271405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6703" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGAT</genome_strand>
        <mrna_strand>ATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281087" ref_strand="+" ref_description="SGN-E281087 [cLER-7-M15]">
      <seq>aaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcatagggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="6972" stop="4558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6672" g_stop="6471" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="312" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4858" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="408" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E281087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6672" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAAC</genome_strand>
        <mrna_strand>AAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303904" ref_strand="+" ref_description="SGN-E303904 [cLEX-4-C16]">
      <seq>tacttttccttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaagagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaaaaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcataggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7067" stop="4560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6767" g_stop="6471" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="407" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4860" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="501" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E303904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6767" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGA</genome_strand>
        <mrna_strand>TACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAAGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAAAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312544" ref_strand="+" ref_description="SGN-E312544 [cLEZ-20-L12]">
      <seq>atcaacatcgcactacttttccttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttgagctgtctggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7080" stop="4565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6780" g_stop="6471" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="420" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4865" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="509" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E312544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6780" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCAT</genome_strand>
        <mrna_strand>ATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200616" ref_strand="+" ref_description="SGN-E200616 [cLEC-9-O17]">
      <seq>tctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgcagctaggcagatggagatcacagtagtcatgaaaattttctggggagatgctcgagagaagttatgtgaagcaattgataaaactcccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7018" stop="4578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6718" g_stop="6471" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5043" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="358" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4953" g_stop="4878" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="434" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6718" e_stop="6471"/>
          <exon e_start="5152" e_stop="5043"/>
          <exon e_start="4953" e_stop="4878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAGGTGATATTTTCTCTTCTTTTATGAGATCCAGTTTTTCTCAGGAAGCATACTAGATCAAGTATTCTTACGAGATTACTCTTTATTAGCAGATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGA</genome_strand>
        <mrna_strand>TCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG.........................................................................................ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296611" ref_strand="+" ref_description="SGN-E296611 [cLET-39-F14]">
      <seq>aaaagtgggttgacatgtggtagcaaatacagtgacagatcaacatcgcactacttttccttcttcttcatcaaaaaaaatccattttgaacccaattgctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaggagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaacattgcaaatgataacccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7118" stop="4759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6818" g_stop="6471" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5059" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="442" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E296611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6818" e_stop="6471"/>
          <exon e_start="5152" e_stop="5059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGGTTGACATGTGGTAGCAAATACAGTGACAGATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGC</genome_strand>
        <mrna_strand>AAAAGTGGGTTGACATGTGGTAGCAAATACAGTGACAGATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214419" ref_strand="+" ref_description="SGN-E214419 [cLEC-77-O20]">
      <seq>gaatgtatagatgtgaagtcttaacagttacttatattaatataccttaaagggtgtgttcagtatgaaggaaaatgcatttctctaggaaaagtaatgaatttcttactttcatttttttcttttttggtgttcagtatgcaaagtattatcctaaaatcatttgtacgtatatgatctagacaaacactatgtgaggtgggtagggggataagtgcgatgaggtaaagtgaatatgaggaacttattttcctagagaaaatgagttcttaggaatttgaccaaccaaacatgtgaaaattggaacacacccaaagtgttaaatcatctaattcatgcttgcacccatctttatttacgaataacttttttgatgtgtctaggtgcaagagttgtagtagctttgtaagaattgtagtagtgaaagcatgtcaccttgggcttgtgttactggtaaaatatgtgatatttgattagtgagattccatcttctgatacatcttttgagattcatttttttgttgcagctttaatacctttatcagagatatgtgatggccacacaatgaagaggtatggggttaaccctgaccctgaaaattgcaaatgataacccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5979" stop="4760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5679" g_stop="5060" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5679" e_stop="5060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTG</genome_strand>
        <mrna_strand>GAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAA-ATTGCAAATGATAACCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241116" ref_strand="+" ref_description="SGN-E241116 [cLED-26-B5]">
      <seq>gctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcactgttcgtcctgaaggacactatgaagaaagagagatgcagctctgggaggccactggttctcctttaatacctttatcagagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7020" stop="4829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6720" g_stop="6471" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="5129" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="274" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E241116" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6720" e_stop="6471"/>
          <exon e_start="5152" e_stop="5129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTCGTATGCCATCATCTCTACATTTATATATGTATTATTTGTTATATTGGTCATCTAAACTTGTTCTATGTGGGCTTTGCAAAGTATACCTGTCTAGGTAAATTAGGAGGATTGCGAGCAGTTAGGTGAAATAGGAATTGATCATCTAGGTCATATCTTATGAGCCACTTTTTCTATTCGATATCATCAACCTGAATGAATATACATAAGTAGATAAAAGAGGCGGAGTTAGAATTTCAACTTTATGGGTTCTAGAATGACTACTTTGATTGCTAATAATTGAGTTCTAAATTTAATATTTAACGACTTTCTTAATCTAGATACACTGTTTGAGCAGAAGCTACTGGTTTGGGGAACCTGTATATGAGCTTCTAGTTCCGCCCATGAGTAGATTACAATCTTTGTTGTGTCCTGCTATATTCTTAATCTATTTGAGTGGCGGCTTTTTGTAGCTACTAGTTCTACTTCATAGTGCTTTAAAGGTTCAATTCTCTATGGTGAAGTACCTAGAAATATATCTGTTTGTTTTGCCATTGTTGGTTACATGTCATAGACATACGGACTCTGGTGAATGGAAAGGGTTAAATACACGTCTACGTATGGGGAGTTGTTTATGTTCGTTAAAGAACAGACTTACATACGTAGAGTTTCATCATCAGGATTGAAGATGCAGCTCATGTTTTTTTGAGTTTCATAGAGAACCCAATCCGTGTCATATAGAGACATTACAAGTGTTTATTTTGGGAATTTCTTCTTGGTTGTAAGAGGGGATAGGAAACTAGATTGCATTAGGAGAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATAT</genome_strand>
        <mrna_strand>GCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAAGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATACCTTTATCAGAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203613" ref_strand="+" ref_description="SGN-E203613 [cLEC-15-H15]">
      <seq>gaatgtatagatgtgaagtcttaacagttacttatattaatataccttaaagggtgtgttcagtatgaaggaaaatgcatttctctaggaaaagtaatgaatttcttactttcatttttttcttttttggtgttcagtatgcaaagtattatcctaaaatcatttgtacgtatatgatctagacaaacactatgtgaggtgggtagggggataagtgcgatgaggtaaagtgaatatgaggaacttattttcctagagaaaatgagttcttaggaatttgaccaaccaaacatgtgaaaattggaacacacccaaagtgttaaatcatctaattcatgcttgcacccatctttatttacgaataacttttttgatgtgtctaggtgcaagagttgtagtagctttgtaagaattgtagtagtgaaagcatgtcaccttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="5979" stop="4938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5679" g_stop="5238" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5679" e_stop="5238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGC</genome_strand>
        <mrna_strand>GAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237553" ref_strand="+" ref_description="SGN-E237553 [cLED-19-N7]">
      <seq>ctctctctatcactatattggtttttcaagaaactgtttaaccaagcaaaaatcttggagttgtaggtatggaaggaggtggtagatttgttggggtagcagtcgatttctcagcttgcagcaacaaagctctgaaatgggccattgataatattcttcgtaaaggggatcatcttattctcgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="7019" stop="6232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6719" g_stop="6532" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E237553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6719" e_stop="6532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACT</genome_strand>
        <mrna_strand>CTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200200" ref_strand="+" ref_description="SGN-E200200 [cLEB-7-P14]">
      <seq>gcaccagcttctctggaggttcaaggtaagtatggtagtttgcagaggaagcaaattgatcttgttgatgacgaaggtgtcagttcaaaatttcttttgtggggtgagcaggttctgcttgcaaacctattcagtgtgggaagtacgcttgccctggatagaccatttatctcgagttcaacggatagtgctgttgaaacatctcaagaatgttaccttgaatatggtactgcaacacagctatatctggtgccctttgttcagaatgaggagcaagtatccctagcactgacacagaaccataacaaaggaccaaaactatcaagagctttggatccaagtcagggatttgtagtctcccaggttttcttgccttgcgattctcaaggctctattgacttcagtaattatcctttccgagtaagcctgtgctccttaacattctgttatcagattctatagaaatagagatttttggaatttatatcttccttgcatttagctctgaatttcagaactaaaaaaagagtggctcttcttaaaatgtttctgacttttaaggacatattaattgacatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="17827" stop="16484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17534" g_stop="17401" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17400" i_stop="17307" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17306" g_stop="17165" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="276" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17164" i_stop="17090" i_length="75">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17089" g_stop="16784" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="582" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200200" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17534" e_stop="17401"/>
          <exon e_start="17306" e_stop="17165"/>
          <exon e_start="17089" e_stop="16784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTACTTCTCTGGAGGTTCAAGGTAAGTATGGTAGTTTGCAGAGGAAGCAAATTGATCTTGTTGATGACGAAGGTGTCAGTTCAAAATTTCTTTTGTGGGGTGAGCAGGTTCTGCTTGCAAACCTATTCAGGTAGAATACCATATGTCCCTTTAATCATTTTTTTTGCTTTGTTTGTTTTTTCTTTTCCTGTTTTTGTACCTGGCTGTAACTTCGTTCTATTCAGTGTGGGAAGTACGCTTGCCCTGGATAGACCATTTATCTCGAGTTCAACGGATAGTGCTGTTGAAACATCTCAAGAATGTTACCTTGAATATGGTACTGCAACACAGCTATATCTGGTGCCCTTTGTTCAGAATGAGGAGCAAGTAAGTCCTGAACAATTGATGTAAGAGATGTTAATTTTCGTAACTGCATGAAAACTTAGATCAGGGTCTTCTCAGGTATCCCTAGCACTGACACAGAACCATAACAAAGGACCAAAACTATCAAGAGCTTTGGATCCAAGTCAGGGATTTGTAGTCTCCCAGGTTTTCTTGCCTTGCGATTCTCAAGGCTCTATTGACTTCAGTAATTATCCTTTCCGAGTAAGCCTGTGCTCCTTAACATTCTGTTATCAGATTCTATAGAAATAGAGATTTTTGGAATTTATATCTTCCTTGCATTTAGCTCTGAATTTCAGAACTAAAAAAAGAGTGGCTCTTCTTAAGATGTTTCTGACTTTTAAGGACATATTAATTGACATGCTA</genome_strand>
        <mrna_strand>GCACCAGCTTCTCTGGAGGTTCAAGGTAAGTATGGTAGTTTGCAGAGGAAGCAAATTGATCTTGTTGATGACGAAGGTGTCAGTTCAAAATTTCTTTTGTGGGGTGAGCAGGTTCTGCTTGCAAACCTATTCAG..............................................................................................TGTGGGAAGTACGCTTGCCCTGGATAGACCATTTATCTCGAGTTCAACGGATAGTGCTGTTGAAACATCTCAAGAATGTTACCTTGAATATGGTACTGCAACACAGCTATATCTGGTGCCCTTTGTTCAGAATGAGGAGCAA...........................................................................GTATCCCTAGCACTGACACAGAACCATAACAAAGGACCAAAACTATCAAGAGCTTTGGATCCAAGTCAGGGATTTGTAGTCTCCCAGGTTTTCTTGCCTTGCGATTCTCAAGGCTCTATTGACTTCAGTAATTATCCTTTCCGAGTAAGCCTGTGCTCCTTAACATTCTGTTATCAGATTCTATAGAAATAGAGATTTTTGGAATTTATATCTTCCTTGCATTTAGCTCTGAATTTCAGAACTAAAAAAAGAGTGGCTCTTCTTAAAATGTTTCTGACTTTTAAGGACATATTAATTGACATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280241" ref_strand="-" ref_description="SGN-E280241 [cLEL-7-J14](-)">
      <seq>gcaccagcttctctggaggttcaaggtaagtatggtagtttgcggaggaagcaaattgatcttgttgctgacgaaggtgtcagttcaaaatttcttttgtggggtgagcaggttctgcttgcaaacctattcagtgtgggaagtacgcttgccctggatagaccatttatctcgagttcaacggatagtgctgttgaaacatctcaagaatgttaccttgaatatggtactgcaacacagctatatctggtgccctttgttcagaatgaggagcaagtatccctagcactgacacagaaccataacaaaggaccaaaactatcaagagctttggatccaagtcagggatttgtagtcttccaggttttcttgccttgcgattctcaaggctctattgacttcagtaattatcctttccgagtaagcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="17827" stop="16636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17534" g_stop="17401" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17400" i_stop="17307" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17306" g_stop="17165" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="276" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17164" i_stop="17090" i_length="75">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17089" g_stop="16936" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="430" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E280241" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17534" e_stop="17401"/>
          <exon e_start="17306" e_stop="17165"/>
          <exon e_start="17089" e_stop="16936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTACTTCTCTGGAGGTTCAAGGTAAGTATGGTAGTTTGCAGAGGAAGCAAATTGATCTTGTTGATGACGAAGGTGTCAGTTCAAAATTTCTTTTGTGGGGTGAGCAGGTTCTGCTTGCAAACCTATTCAGGTAGAATACCATATGTCCCTTTAATCATTTTTTTTGCTTTGTTTGTTTTTTCTTTTCCTGTTTTTGTACCTGGCTGTAACTTCGTTCTATTCAGTGTGGGAAGTACGCTTGCCCTGGATAGACCATTTATCTCGAGTTCAACGGATAGTGCTGTTGAAACATCTCAAGAATGTTACCTTGAATATGGTACTGCAACACAGCTATATCTGGTGCCCTTTGTTCAGAATGAGGAGCAAGTAAGTCCTGAACAATTGATGTAAGAGATGTTAATTTTCGTAACTGCATGAAAACTTAGATCAGGGTCTTCTCAGGTATCCCTAGCACTGACACAGAACCATAACAAAGGACCAAAACTATCAAGAGCTTTGGATCCAAGTCAGGGATTTGTAGTCTCCCAGGTTTTCTTGCCTTGCGATTCTCAAGGCTCTATTGACTTCAGTAATTATCCTTTCCGAGTAAGCCTGT</genome_strand>
        <mrna_strand>GCACCAGCTTCTCTGGAGGTTCAAGGTAAGTATGGTAGTTTGCGGAGGAAGCAAATTGATCTTGTTGCTGACGAAGGTGTCAGTTCAAAATTTCTTTTGTGGGGTGAGCAGGTTCTGCTTGCAAACCTATTCAG..............................................................................................TGTGGGAAGTACGCTTGCCCTGGATAGACCATTTATCTCGAGTTCAACGGATAGTGCTGTTGAAACATCTCAAGAATGTTACCTTGAATATGGTACTGCAACACAGCTATATCTGGTGCCCTTTGTTCAGAATGAGGAGCAA...........................................................................GTATCCCTAGCACTGACACAGAACCATAACAAAGGACCAAAACTATCAAGAGCTTTGGATCCAAGTCAGGGATTTGTAGTCTTCCAGGTTTTCTTGCCTTGCGATTCTCAAGGCTCTATTGACTTCAGTAATTATCCTTTCCGAGTAAGCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337366" ref_strand="+" ref_description="SGN-E337366 [cTOE-18-L23]">
      <seq>cttaccggagaagctctatttcacatcaggcatgacggacaatgaggcgtcagccatggaagtggagcgctgccagtggaatggcggaggagaaagagaagtagcagtagaagaggaagaagatccatttcttcaattcattgaatacgccaaggctcttctatctcccgatagtgacggtaatggagatgattcgaagggacctagttggagatggattgtttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="22191" stop="21363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21891" g_stop="21663" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E337366" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21891" e_stop="21663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCGGAGAAGCTCTATTTCACATCAGGCATGACGGACAATGAGGCGTCAGCCATGGAAGTGGAGCGCTGCCAGTGGAATGGCGGAGGAGAAAGAGAAGTAGCAGTAGAAGAGGAAGAAGATCCATTTCTTCAATTCATTGAATACGCCAAGTCTCTTCTATCTCCCGATAGTGACGGTAATGGAGATGATTCGAAGGGACCTAGTTGGAGATGGATTGTTTCAAGG</genome_strand>
        <mrna_strand>CTTACCGGAGAAGCTCTATTTCACATCAGGCATGACGGACAATGAGGCGTCAGCCATGGAAGTGGAGCGCTGCCAGTGGAATGGCGGAGGAGAAAGAGAAGTAGCAGTAGAAGAGGAAGAAGATCCATTTCTTCAATTCATTGAATACGCCAAGGCTCTTCTATCTCCCGATAGTGACGGTAATGGAGATGATTCGAAGGGACCTAGTTGGAGATGGATTGTTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351107" ref_strand="+" ref_description="SGN-E351107 [cTOS-6-D2]">
      <seq>gattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="28687" stop="29710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28899" g_stop="29416" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E351107" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28899" e_stop="29416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGC-ACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTT</genome_strand>
        <mrna_strand>GATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205052" ref_strand="+" ref_description="SGN-E205052 [cLEC-16-D12]">
      <seq>gtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="28687" stop="29674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28905" g_stop="29374" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E205052" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28905" e_stop="29374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGC-ACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTT</genome_strand>
        <mrna_strand>GTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200312" ref_strand="+" ref_description="SGN-E200312 [cLEC-1-A19](-)">
      <seq>atctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaataacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="28687" stop="29713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28973" g_stop="29412" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="451"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E200312" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28973" e_stop="29412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNTTGGTGC-ACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>ATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307500" ref_strand="+" ref_description="SGN-E307500 [cLEY-24-A3]">
      <seq>tcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="28932" stop="29713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29232" g_stop="29412" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="182" polyA_stop="191"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E307500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29232" e_stop="29412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>TCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744520" ref_strand="+" ref_description="SGN-E744520 [GI|170381]">
      <seq>atcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcttttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaattttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattatttccatgtttgattacactctgatctggtaactgcaaattttaattatcacacatatcaatcaagttctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="49536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="49836" g_length="1252"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="1331" r_length="1251" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E744520" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1332</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="49836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTACACTCTGATCTGGTAACTGCAAATTTTAATTATCACACATATCAATCAAGTTCTATGA</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCTTTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAA-TTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTACACTCTGATCTGGTAACTGCAAATTTTAATTATCACACATATCAATCAAGTTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349976" ref_strand="+" ref_description="SGN-E349976 [cTOS-4-G3]">
      <seq>tctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattatttccatgtttgattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50798" stop="49592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50498" g_stop="49894" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="620"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E349976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50498" e_stop="49894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTA</genome_strand>
        <mrna_strand>TCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350221" ref_strand="+" ref_description="SGN-E350221 [cTOS-4-B5]">
      <seq>tctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatncattacattatttccatgtttgatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50798" stop="49592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50498" g_stop="49898" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="620"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E350221" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50498" e_stop="49898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTG</genome_strand>
        <mrna_strand>TCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATNCATTACATTATTTCCATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204227" ref_strand="+" ref_description="SGN-E204227 [cLEC-13-H11]">
      <seq>aaacatggaaataatgtaattgatggtgtattgaaatatacaaccttacaaaaagtttcattccagaatgacaaacaaaaggaattttaaaagttccccctacgaatttatttggtgttgcatacaaacataaaattgcatgaagatactatatatatgctttcaaatatgtctttttaaatctcactagtgagtgaagaagcagtgctattagtaatgtcccaaactctttcagacaccccaaagtttaggttgtattttggctgcttgtttggtgaaaacattccaaaatgcttctcaagctctggattcttgttattctcatcaaacatggcgaatatataagtctctataggtccaggctttctcggactaccttctttagcatgttgaattaagttcctcaagtatgtttgtgcattttcatgtgttgcaccaaatgcaccagcagatggccatccactctctgacacaactattcctacagatcctcctcctgttcgatccatcgcagcataaacagaatccaacatagcatcaaataagttcctatattgacgcgatccatcttgtaccactacattaggtgctgtaaaaagagcatacggaagtgaaatctgtcctggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="49599" stop="50829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49899" g_stop="50529" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E204227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49899" e_stop="50529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGAAATAATGTAATTGATGGTGTATTGAAATATACAACCTTACAAAAAGTTTCATTCCAGAATGACAAACAAAAGGAATTTTAAAAGTTCCCCCTACGAATTTATTTGGTGTTGCATACAAACATAAAATTGCATGAAGATACTATATATATGCTTTCAAATATGTCTTTTTAAATCTCACTAGTGAGTGAAGAAGCAGTGCTATTAGTAATGTCCCAAACTCTTTCAGACACCCCAAAGTTTAGGTTGTATTTTGGCTGCTTGTTTGGTGAAAACATTCCAAAATGCTTCTCAAGCTCTGGATTCTTGTTATTCTCATCAAACATGGCGAATATATAAGTCTCTATAGGTCCAGGCTTTCTCGGACTACCTTCTTTAGCATGTTGAATTAAGTTCCTCAAGTATGTTTGTGCATTTTCATGTGTTGCACCAAATGCACCAGCAGATGGCCATCCACTCTCTGACACAACTATTCCTACAGATCCTCCTCCTGTTCGATCCATCGCAGCATAAACAGAATCCAACATAGCATCAAATAAGTTCCTATATTGACGCGATCCATCTTGTACCACTACATTAGGTGCTGTAAAAAGAGCATACGGAAGTGAAATCTGTCCTGGATTAC</genome_strand>
        <mrna_strand>AAACATGGAAATAATGTAATTGATGGTGTATTGAAATATACAACCTTACAAAAAGTTTCATTCCAGAATGACAAACAAAAGGAATTTTAAAAGTTCCCCCTACGAATTTATTTGGTGTTGCATACAAACATAAAATTGCATGAAGATACTATATATATGCTTTCAAATATGTCTTTTTAAATCTCACTAGTGAGTGAAGAAGCAGTGCTATTAGTAATGTCCCAAACTCTTTCAGACACCCCAAAGTTTAGGTTGTATTTTGGCTGCTTGTTTGGTGAAAACATTCCAAAATGCTTCTCAAGCTCTGGATTCTTGTTATTCTCATCAAACATGGCGAATATATAAGTCTCTATAGGTCCAGGCTTTCTCGGACTACCTTCTTTAGCATGTTGAATTAAGTTCCTCAAGTATGTTTGTGCATTTTCATGTGTTGCACCAAATGCACCAGCAGATGGCCATCCACTCTCTGACACAACTATTCCTACAGATCCTCCTCCTGTTCGATCCATCGCAGCATAAACAGAATCCAACATAGCATCAAATAAGTTCCTATATTGACGCGATCCATCTTGTACCACTACATTAGGTGCTGTAAAAAGAGCATACGGAAGTGAAATCTGTCCTGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210616" ref_strand="+" ref_description="SGN-E210616 [cLEC-68-O9]">
      <seq>accatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgannactttttgtaaggttgtatatttncatacaccatcaattacattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50948" stop="49610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50648" g_stop="49903" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210616" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50648" e_stop="49903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGA-AACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCAT</genome_strand>
        <mrna_strand>ACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGANNACTTTTTGTAAGGTTGTATATTTNCATACACCATCAATTACATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351107" ref_strand="+" ref_description="SGN-E351107 [cTOS-6-D2]">
      <seq>gattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50725" stop="49613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50425" g_stop="49907" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E351107" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50425" e_stop="49907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTT</genome_strand>
        <mrna_strand>GATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210948" ref_strand="-" ref_description="SGN-E210948 [cLEC-69-F9]">
      <seq>ggttcatttaggaacgatgttagatgtttactgatccaattgttggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50938" stop="49610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50638" g_stop="49911" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="749"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210948" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210948" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50638" e_stop="49911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>GGTTCATTTAGGAACGATGTTAGAT-GTTTACTGATCCAATTGTT-GGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375797" ref_strand="+" ref_description="SGN-E375797 [TUS-15-G8](-)">
      <seq>ttaacatttatccttattttagctattttggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50859" stop="49610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50559" g_stop="49911" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="659"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E375797" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50559" e_stop="49911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>TTAACATTTATCCTTATTTTAGCTATTTTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211040" ref_strand="-" ref_description="SGN-E211040 [cLEC-69-M21]">
      <seq>attttagctattctggtaatccaggacagatgtcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgctttttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50844" stop="49610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50544" g_stop="49911" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="657"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211040" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211040" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50544" e_stop="49911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>ATTTTAGCTATTCTGGTAATCCAGGACAGATGTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTTTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200312" ref_strand="+" ref_description="SGN-E200312 [cLEC-1-A19](-)">
      <seq>atctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaataacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50651" stop="49610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="49911" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="451"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200312" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="49911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>ATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307500" ref_strand="+" ref_description="SGN-E307500 [cLEY-24-A3]">
      <seq>tcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtatatttcaatacaccatcaattacattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50391" stop="49610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50091" g_stop="49911" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="182" polyA_stop="191"/>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E307500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50091" e_stop="49911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</genome_strand>
        <mrna_strand>TCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352930" ref_strand="+" ref_description="SGN-E352930 [cTOS-11-J16]">
      <seq>tttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttgtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50796" stop="49635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50496" g_stop="49932" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E352930" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50496" e_stop="49932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTT</genome_strand>
        <mrna_strand>TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352723" ref_strand="+" ref_description="SGN-E352723 [cTOS-11-L13]">
      <seq>tttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttgtaaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50796" stop="49639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50496" g_stop="49939" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E352723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50496" e_stop="49939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTG</genome_strand>
        <mrna_strand>TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353399" ref_strand="+" ref_description="SGN-E353399 [cTOS-15-L15]">
      <seq>tttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50796" stop="49647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50496" g_stop="49947" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E353399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50496" e_stop="49947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTG</genome_strand>
        <mrna_strand>TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211026" ref_strand="+" ref_description="SGN-E211026 [cLEC-69-G7]">
      <seq>agctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaagacatattttgaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaaactttaaaattccttttgtttgtcattctggaatgaaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51017" stop="49648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50717" g_stop="49948" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211026" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50717" e_stop="49948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTT</genome_strand>
        <mrna_strand>AGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTT-AAAAGACATATTTTGAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAAACTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212808" ref_strand="+" ref_description="SGN-E212808 [cLEC-73-K13]">
      <seq>tcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttnaaattccttttgtttgtcattctggaatgaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50935" stop="49648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50635" g_stop="49948" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212808" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50635" e_stop="49948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTT</genome_strand>
        <mrna_strand>TCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTNAAATTCCTTTTGTTTGTCATTCTGGAATG-AACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205052" ref_strand="+" ref_description="SGN-E205052 [cLEC-16-D12]">
      <seq>gtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattccttttgtttgtcattctggaatgaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50719" stop="49649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50419" g_stop="49949" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50419" e_stop="49949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTT</genome_strand>
        <mrna_strand>GTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211331" ref_strand="+" ref_description="SGN-E211331 [cLEC-70-D4]">
      <seq>ttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaatcctttttgttggcattctggaatgaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50910" stop="49650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50610" g_stop="49950" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211331" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50610" e_stop="49950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTT</genome_strand>
        <mrna_strand>TTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAA-TCCTTTTTGTTGGCATTCTGGAATGAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213876" ref_strand="+" ref_description="SGN-E213876 [cLEC-76-F2]">
      <seq>caattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacacaaataaattcgtagggggaacttttaaaattccttttgttgtcattctggaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50960" stop="49655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50660" g_stop="49955" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213876" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50660" e_stop="49955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAA</genome_strand>
        <mrna_strand>CAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACA-CAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTG-TTGTCATTCTGGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379879" ref_strand="+" ref_description="SGN-E379879 [TUS-1-J14](-)">
      <seq>atcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttagaattccttttgtttgtcattctggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50945" stop="49656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50645" g_stop="49956" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E379879" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50645" e_stop="49956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGA</genome_strand>
        <mrna_strand>ATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAGAATTCCTTTTGTTTGTCATTCTGGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214233" ref_strand="+" ref_description="SGN-E214233 [cLEC-77-M10]">
      <seq>caccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctanactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagattttaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaaattcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50949" stop="49675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50649" g_stop="49975" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214233" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50649" e_stop="49975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTT</genome_strand>
        <mrna_strand>CACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTANACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTTAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282256" ref_strand="+" ref_description="SGN-E282256 [cLES-4-I4]">
      <seq>tgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttgtatgcaacaccaaataaattcgtagggggaacttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50886" stop="49684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50586" g_stop="49984" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E282256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50586" e_stop="49984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAA</genome_strand>
        <mrna_strand>TGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215093" ref_strand="+" ref_description="SGN-E215093 [cLEC-78-H13]">
      <seq>atttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgcaattttatgtttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50933" stop="49720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50633" g_stop="50020" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50633" e_stop="50020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTAT</genome_strand>
        <mrna_strand>ATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210766" ref_strand="+" ref_description="SGN-E210766 [cLEC-68-C22]">
      <seq>tgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcatttttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtngtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcctcatgcaaattttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51110" stop="49725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50810" g_stop="50025" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210766" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50810" e_stop="50025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCA-TTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGT-GTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGC-AATTTTATGTT</genome_strand>
        <mrna_strand>TGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTNGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCCTCATGCAAATTTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211703" ref_strand="+" ref_description="SGN-E211703 [cLEC-66-A7]">
      <seq>caccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatgccatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50949" stop="49729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50649" g_stop="50029" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211703" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50649" e_stop="50029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTA</genome_strand>
        <mrna_strand>CACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214087" ref_strand="+" ref_description="SGN-E214087 [cLEC-80-E22]">
      <seq>atcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttnaaaagacatatttgaaagcatatatatagtatcttcatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51097" stop="49735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50797" g_stop="50035" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214087" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50797" e_stop="50035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCA</genome_strand>
        <mrna_strand>ATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTNAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311173" ref_strand="+" ref_description="SGN-E311173 [cLEZ-16-J22]">
      <seq>cagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50941" stop="49737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50641" g_stop="50037" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E311173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50641" e_stop="50037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATG</genome_strand>
        <mrna_strand>CAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205136" ref_strand="+" ref_description="SGN-E205136 [cLEC-16-I16]">
      <seq>tttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaagcatatatatagtatcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50890" stop="49738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50590" g_stop="50038" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50590" e_stop="50038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCAT</genome_strand>
        <mrna_strand>TTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210607" ref_strand="+" ref_description="SGN-E210607 [cLEC-68-K9]">
      <seq>accatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcaaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacgtgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaaacattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggagattactaatagcactgcttcttcactcactagtgagatttaaaaagacatatttgaaaggatatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50948" stop="49748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50648" g_stop="50048" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210607" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50648" e_stop="50048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATA</genome_strand>
        <mrna_strand>ACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCAAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACGTGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAACATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGAGATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGGATATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288662" ref_strand="+" ref_description="SGN-E288662 [cLES-8-H2]">
      <seq>tttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgtgaagcattttgtgatgttttcaccaaacaagcagccaaaatacaatctatacttttgggtgtctgaaagagtttgggacattactaatagcactgctttttcactcactagtgagatttaaaaagacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50890" stop="49766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50590" g_stop="50066" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E288662" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50590" e_stop="50066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATA</genome_strand>
        <mrna_strand>TTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGTGAAGCATTTTGTGATGTTTTCACCAAACAAGCAGCCAAAATACAATCTATACTTTTGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTTTTCACTCACTAGTGAGATTTAAAAAGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214729" ref_strand="+" ref_description="SGN-E214729 [cLEC-79-F18]">
      <seq>agcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaaagagtttgggacattactaatagcactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51029" stop="49799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50729" g_stop="50099" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50729" e_stop="50099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCT</genome_strand>
        <mrna_strand>AGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213785" ref_strand="+" ref_description="SGN-E213785 [cLEC-76-M9]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacagaatccagagcttgagaagcattttgggatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="49829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50129" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAA</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAAC-AGAATCCAGAGCTTGAGAAGCATTTTGGGATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213404" ref_strand="+" ref_description="SGN-E213404 [cLEC-71-I20]">
      <seq>aacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaacaagcagccaaaatacaacctaaactttggggtgtctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51180" stop="49829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50880" g_stop="50129" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50880" e_stop="50129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAA</genome_strand>
        <mrna_strand>AACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214169" ref_strand="+" ref_description="SGN-E214169 [cLEC-77-E9]">
      <seq>ttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtacgaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacagaaatcagagcttgagaagcattttggaatgttttcaccaaacaaagcagcaaaatacaacctaaactttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51142" stop="49838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50842" g_stop="50138" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214169" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50842" e_stop="50138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAAC-AAGCAGCCAAAATACAACCTAAACTTTGGG</genome_strand>
        <mrna_strand>TTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTACGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAAC-AGAAATCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAAGCAG-CAAAATACAACCTAAACTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209891" ref_strand="+" ref_description="SGN-E209891 [cLEC-52-B19]">
      <seq>atttatgaacgatgttagatggttgactgatccaattgttgggtttttgagggatacacgtgcacctttgcttgataacatttatccttattttagctattctggtaatccaggacagatttcactttcgtatgctctttttacagcacctaatgtagaggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaagaggatctgtaagaatagttgcgtcaaaaagtgaatggccatttgctggtgcatttggtgcatcacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagatccgagaaagcctggacctatagagacttatatattcgccatgtgtgatgagaataacaagaattcagagcttgctaagcattttggaatgtttataccaaacaagcagccaatatacaacctatactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50933" stop="49840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50633" g_stop="50140" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209891" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50633" e_stop="50140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAG-TCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTG</genome_strand>
        <mrna_strand>ATTTATGAACGATGTTAGATGGTTGACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTTGATAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTTCGTATGCTCTTTTTACAGCACCTAATGTAGAGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAAGAGGATCTGTAAGAATAGTTGCGTCAAAAAGTGAATGGCCATTTGCTGGTGCATTTGGTGCATCACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGATCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTGTGATGAGAATAACAAGAATTCAGAGCTTGCTAAGCATTTTGGAATGTTTATACCAAACAAGCAGCCAATATACAACCTATACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214286" ref_strand="+" ref_description="SGN-E214286 [cLEC-77-D6]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggntgcacacatgaaaatgcacaaacatacttgaggaacttattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcacaaacaagcagccaaaatacacctaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="49841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50141" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214286" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGG-TGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTT</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGNTGC-ACACATGAAAATGCACAAACATACTTGAGGAACTT-ATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCA-CAAACAAGCAGCCAAAATAC-ACCTAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211381" ref_strand="+" ref_description="SGN-E211381 [cLEC-67-G13]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgagggacttaattncacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcccaaacaagcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="49860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50160" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211381" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCC</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGGACTTAATTNCACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTC-CCAAACAAGCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202386" ref_strand="+" ref_description="SGN-E202386 [cLEC-6-J22]">
      <seq>tccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttggaatgttttcaccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50951" stop="49868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50651" g_stop="50168" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50651" e_stop="50168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAAC</genome_strand>
        <mrna_strand>TCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212401" ref_strand="+" ref_description="SGN-E212401 [cLEC-74-F9]">
      <seq>atcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaactctattcaacatgctaaagaaagtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatcccgagcttgagaagcatttttggaatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51025" stop="49876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50725" g_stop="50176" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212401" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50725" e_stop="50176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCA-TTTTGGAATGTTTT</genome_strand>
        <mrna_strand>ATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTCTATTCAACATGCTAAAGAAAGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCCGAGCTTGAGAAGCATTTTTGGAATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210681" ref_strand="+" ref_description="SGN-E210681 [cLEC-68-P17]">
      <seq>taagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaactttattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaaatacagaatccagagcttgagaagcattttggaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51252" stop="49877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50952" g_stop="50177" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210681" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50952" e_stop="50177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTT</genome_strand>
        <mrna_strand>TAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTTATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAAATAC-AGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210611" ref_strand="+" ref_description="SGN-E210611 [cLEC-68-M9]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagatccagagcttgagaagcattttggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="49880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50180" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210611" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATG</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAG-ATCCAGAGCTTGAGAAGCATTTTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211515" ref_strand="+" ref_description="SGN-E211515 [cLEC-67-F18]">
      <seq>cagggctgatttcattaccaacagctatatactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagcattttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51090" stop="49883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50783" g_stop="50183" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="633" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50783" e_stop="50183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGA</genome_strand>
        <mrna_strand>TGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205454" ref_strand="+" ref_description="SGN-E205454 [cLEC-28-N6]">
      <seq>tccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaatccagagcttgagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50951" stop="49890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50651" g_stop="50190" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50651" e_stop="50190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCA</genome_strand>
        <mrna_strand>TCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205243" ref_strand="+" ref_description="SGN-E205243 [cLEC-25-D3]">
      <seq>tgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttagattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51101" stop="49908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="50208" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205243" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="50208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAA</genome_strand>
        <mrna_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTAGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209801" ref_strand="+" ref_description="SGN-E209801 [cLEC-52-B16]">
      <seq>caattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaataacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50960" stop="49910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50660" g_stop="50210" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50660" e_stop="50210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAG</genome_strand>
        <mrna_strand>CAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266825" ref_strand="+" ref_description="SGN-E266825 [cLEI-7-J3]">
      <seq>gtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcacagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50984" stop="49916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50684" g_stop="50216" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E266825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50684" e_stop="50216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAAT</genome_strand>
        <mrna_strand>GTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCACAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209424" ref_strand="+" ref_description="SGN-E209424 [cLEC-53-L5]">
      <seq>cgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50970" stop="49919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50219" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAG</genome_strand>
        <mrna_strand>CGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211037" ref_strand="+" ref_description="SGN-E211037 [cLEC-69-M1]">
      <seq>tcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaaacttattcaancatgctaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51244" stop="49921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50944" g_stop="50221" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211037" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50944" e_stop="50221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAA-CATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</genome_strand>
        <mrna_strand>TCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAAACTTATTCAANCATGCT-AAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210832" ref_strand="+" ref_description="SGN-E210832 [cLEC-68-B12]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="49921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50221" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213592" ref_strand="+" ref_description="SGN-E213592 [cLEC-76-C15]">
      <seq>gagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaagtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51173" stop="49921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50873" g_stop="50221" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50873" e_stop="50221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</genome_strand>
        <mrna_strand>GAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAAGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213086" ref_strand="+" ref_description="SGN-E213086 [cLEC-72-H12]">
      <seq>tgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaagtagtccgagaaagcctggacctatagagacttatatattcgccatgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51101" stop="49921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="50221" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="50221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</genome_strand>
        <mrna_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAAGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213838" ref_strand="+" ref_description="SGN-E213838 [cLEC-76-F13]">
      <seq>ctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacaatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcagcatgctaaagaaggtagtccgagaaagcctggacctatagagacttatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51135" stop="49935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50835" g_stop="50235" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213838" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50835" e_stop="50235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATT</genome_strand>
        <mrna_strand>CTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACAATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAGCATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268384" ref_strand="+" ref_description="SGN-E268384 [cLEI-13-K16]">
      <seq>gcaattcttatccaccatcacagggttcatttaggagcgatgttagatggtgtactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtgggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgggacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcctggacctatagagacttatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50961" stop="49937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50661" g_stop="50237" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E268384" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50661" e_stop="50237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATA</genome_strand>
        <mrna_strand>GCAATTCTTATCCACCATCACAGGGTTCATTTAGGAGCGATGTTAGATGGTGTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTGGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGGGACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200759" ref_strand="+" ref_description="SGN-E200759 [cLEC-9-C10]">
      <seq>ccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaagaaggtagtccgagaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50902" stop="49958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50602" g_stop="50258" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50602" e_stop="50258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCT</genome_strand>
        <mrna_strand>CCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210601" ref_strand="+" ref_description="SGN-E210601 [cLEC-68-I5]">
      <seq>taagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacattgaaatgcacaaacatacttgnaagaacttaaattcacatgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51252" stop="49979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50952" g_stop="50279" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210601" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50952" e_stop="50279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTG-AGGAACTTAATTCAACATGCTAAA</genome_strand>
        <mrna_strand>TAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATTGAAATGCACAAACATACTTGNAAGAACTTAAATTCACATGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205043" ref_strand="+" ref_description="SGN-E205043 [cLEC-16-P3]">
      <seq>ctgttactggcacttccaatcttgccccatttgaagttgctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51090" stop="49979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50790" g_stop="50279" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205043" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50790" e_stop="50279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAA</genome_strand>
        <mrna_strand>CTGTTACTGGCACTTCCAATCTTGCCCCATTTGAAGTTGCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211503" ref_strand="+" ref_description="SGN-E211503 [cLEC-67-B12]">
      <seq>tatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcacacatgaaaatgcacaaacatacttgaggaacttattcacatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51326" stop="49980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51026" g_stop="50280" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211503" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51026" e_stop="50280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAA</genome_strand>
        <mrna_strand>TATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGC-ACACATGAAAATGCACAAACATACTTGAGGAACTT-ATTC-ACATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211239" ref_strand="+" ref_description="SGN-E211239 [cLEC-70-F12]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtggcacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="49980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50280" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAA</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGGCACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213599" ref_strand="+" ref_description="SGN-E213599 [cLEC-76-G11]">
      <seq>gaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggangaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatactttgaggactttaattcacatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51203" stop="49980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50903" g_stop="50280" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213599" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50903" e_stop="50280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATAC-TTGAGGAACTTAATTCAACATGCTAA</genome_strand>
        <mrna_strand>GAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGANGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTTGAGGACTTTAATTC-ACATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213653" ref_strand="+" ref_description="SGN-E213653 [cLEC-76-K24]">
      <seq>ggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtggcacacatgaaaatgcacaaacatacttgaggaaaacttattcacatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51354" stop="49998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51054" g_stop="50281" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213653" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51054" e_stop="50281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGG-AACTTAATTCAACATGCTA</genome_strand>
        <mrna_strand>GGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGGCACACATGAAAATGCACAAACATACTTGAGGAAAACTTATTC-ACATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212676" ref_strand="+" ref_description="SGN-E212676 [cLEC-73-A16]">
      <seq>acatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggangatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaaaacttattcacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51198" stop="49998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50898" g_stop="50282" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212676" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50898" e_stop="50282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGG-AACTTAATTCAACATGCT</genome_strand>
        <mrna_strand>ACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGANGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAAAACTTATTC-ACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204239" ref_strand="+" ref_description="SGN-E204239 [cLEC-13-L19]">
      <seq>acacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51179" stop="49982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50879" g_stop="50282" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50879" e_stop="50282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCT</genome_strand>
        <mrna_strand>ACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209319" ref_strand="+" ref_description="SGN-E209319 [cLEC-53-D24]">
      <seq>atgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattgtagctattctggtaatccaggacagatttcacttgcgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatctaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51102" stop="49982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50802" g_stop="50282" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209319" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50802" e_stop="50282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCT</genome_strand>
        <mrna_strand>ATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTGTAGCTATTCTGGTAATCCAGGACAGATTTCACTTGCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCTAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202685" ref_strand="+" ref_description="SGN-E202685 [cLEC-19-D12]">
      <seq>gagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51173" stop="49983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50873" g_stop="50283" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50873" e_stop="50283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</genome_strand>
        <mrna_strand>GAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206918" ref_strand="+" ref_description="SGN-E206918 [cLEC-33-P24]">
      <seq>tgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51101" stop="49983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="50283" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="50283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</genome_strand>
        <mrna_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201340" ref_strand="+" ref_description="SGN-E201340 [cLEC-4-E4]">
      <seq>agcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51029" stop="49983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50729" g_stop="50283" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50729" e_stop="50283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</genome_strand>
        <mrna_strand>AGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200827" ref_strand="+" ref_description="SGN-E200827 [cLEC-5-A3]">
      <seq>ttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50910" stop="49983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50610" g_stop="50283" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50610" e_stop="50283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</genome_strand>
        <mrna_strand>TTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201509" ref_strand="+" ref_description="SGN-E201509 [cLEC-4-F7]">
      <seq>gatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaacttaattcaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="50881" stop="49983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50581" g_stop="50283" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50581" e_stop="50283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</genome_strand>
        <mrna_strand>GATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309292" ref_strand="+" ref_description="SGN-E309292 [cLEY-22-L17]">
      <seq>ggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttgaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51223" stop="49997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50923" g_stop="50297" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E309292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50923" e_stop="50297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAAC</genome_strand>
        <mrna_strand>GGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204241" ref_strand="+" ref_description="SGN-E204241 [cLEC-13-N13]">
      <seq>acgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51153" stop="50002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50853" g_stop="50302" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50853" e_stop="50302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGA</genome_strand>
        <mrna_strand>ACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206301" ref_strand="+" ref_description="SGN-E206301 [cLEC-23-M17]">
      <seq>taaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttgcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51128" stop="50002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50828" g_stop="50302" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50828" e_stop="50302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGA</genome_strand>
        <mrna_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTGCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214870" ref_strand="+" ref_description="SGN-E214870 [cLEC-78-C8]">
      <seq>atcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatgcacaaacatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51097" stop="50003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50797" g_stop="50303" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50797" e_stop="50303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTG</genome_strand>
        <mrna_strand>ATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214043" ref_strand="+" ref_description="SGN-E214043 [cLEC-80-E11]">
      <seq>ataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctcttttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctggtttatgctgcgatggatcgaacaggaggagggatctgtaggaaatagtgtgtccagagagtggatggccatctgctgggtgcatttggtgcaacacatngaaatgcacaaacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51379" stop="50005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51079" g_stop="50305" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214043" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51079" e_stop="50305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC-TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCT-GTTTATGCTGCGATGGATCGAACAGGAGGA-GGATCTGTAGGAATAGTTGTGT-CAGAGAGTGGATGGCCATCTGCT-GGTGCATTTGGTGCAACACATGAAAATGCACAAACATACT</genome_strand>
        <mrna_strand>ATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGGTTTATGCTGCGATGGATCGAACAGGAGGAGGGATCTGTAGGAAATAGTGTGTCCAGAGAGTGGATGGCCATCTGCTGGGTGCATTTGGTGCAACACATNGAAATGCACAAACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210195" ref_strand="+" ref_description="SGN-E210195 [cLEC-40-O3]">
      <seq>ggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacacatgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51223" stop="50017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50923" g_stop="50317" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50923" e_stop="50317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATG</genome_strand>
        <mrna_strand>GGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210175" ref_strand="+" ref_description="SGN-E210175 [cLEC-40-A23]">
      <seq>gtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaagaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcatttggtgcaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51211" stop="50025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50911" g_stop="50325" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210175" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50911" e_stop="50325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACA</genome_strand>
        <mrna_strand>GTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAAGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214704" ref_strand="+" ref_description="SGN-E214704 [cLEC-79-L23]">
      <seq>tttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtcaaagagtggatggccatctgctggtgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51285" stop="50035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50985" g_stop="50335" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214704" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50985" e_stop="50335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTG</genome_strand>
        <mrna_strand>TTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTCAAAGAGTGGATGGCCATCTGCTGGTGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723283" ref_strand="+" ref_description="SGN-E723283 [FC20AB05]">
      <seq>gggcgattggcggccaatcggccgaattaaaaacattacttctcaccattcagcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacaccattcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtggatggccatctgctggtgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52146" stop="50036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51842" g_stop="51746" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="124" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50336" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="876" r_length="752" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E723283" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51842" e_stop="51746"/>
          <exon e_start="51087" e_stop="50336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTT</genome_strand>
        <mrna_strand>TAAAAACATTACTTCTCACCATTCAGCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACCATTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214453" ref_strand="+" ref_description="SGN-E214453 [cLEC-77-J7]">
      <seq>gaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatgggatcgaacaggangangatctgtangaatagttgtgtcagagagtggatggccatctgctggtgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51203" stop="50036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50903" g_stop="50336" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214453" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50903" e_stop="50336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGAT-GGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTT</genome_strand>
        <mrna_strand>GAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGGATCGAACAGGANGANGATCTGTANGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207311" ref_strand="+" ref_description="SGN-E207311 [cLEC-30-J7]">
      <seq>tgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttagattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtcagagagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51101" stop="50057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="50357" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="50357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGA</genome_strand>
        <mrna_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTAGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210540" ref_strand="+" ref_description="SGN-E210540 [cLEC-35-P9]">
      <seq>aaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtangaatagttgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51275" stop="50067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50975" g_stop="50367" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50975" e_stop="50367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTC</genome_strand>
        <mrna_strand>AAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTANGAATAGTTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201470" ref_strand="+" ref_description="SGN-E201470 [cLEC-4-C12]">
      <seq>tcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaatagttgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51244" stop="50067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50944" g_stop="50367" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50944" e_stop="50367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTC</genome_strand>
        <mrna_strand>TCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212321" ref_strand="+" ref_description="SGN-E212321 [cLEC-74-E17]">
      <seq>acacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaaaagttgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51179" stop="50067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50879" g_stop="50367" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50879" e_stop="50367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTC</genome_strand>
        <mrna_strand>ACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAAAAGTTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204611" ref_strand="+" ref_description="SGN-E204611 [cLEC-14-K17]">
      <seq>tttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgtaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51285" stop="50077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50985" g_stop="50377" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50985" e_stop="50377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAA</genome_strand>
        <mrna_strand>TTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214539" ref_strand="+" ref_description="SGN-E214539 [cLEC-79-E14]">
      <seq>attctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatangaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51336" stop="50082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51036" g_stop="50382" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214539" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51036" e_stop="50382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGT</genome_strand>
        <mrna_strand>ATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265535" ref_strand="+" ref_description="SGN-E265535 [cLEI-14-H3]">
      <seq>taaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttgcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51128" stop="50083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50828" g_stop="50383" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E265535" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50828" e_stop="50383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTG</genome_strand>
        <mrna_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTGCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200311" ref_strand="+" ref_description="SGN-E200311 [cLEC-1-A19]">
      <seq>tgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaacaggaggaggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51101" stop="50083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="50383" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="50383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTG</genome_strand>
        <mrna_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267427" ref_strand="+" ref_description="SGN-E267427 [cLEI-8-G10]">
      <seq>taaaattaagtatatagctgttggtaatgaaatcatccctgttactggcgcttacaatcttgccccatttcaggttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaagtctcaacgtctggatacatgacgctgattggcaatccttatacaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctctgctcggtgacatctatccatattttaactattctggtcatccaggacagatttcacttccgtatgctctatttacagcacctaatgtattggtacaagatggatcgcgtaaatataggaactgatttgatgctatgttggattctgtttatgctgcgatggatcgaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51128" stop="50095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50828" g_stop="50395" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E267427" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50828" e_stop="50395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAG</genome_strand>
        <mrna_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCATCCCTGTTACTGGCGCTTACAATCTTGCCCCATTTCAGGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAACGTCTGGATACATGACGCTGATTGGCAATCCTTATACACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTCTGCTCGGTGACATCTATCCATATTTTAACTATTCTGGTCATCCAGGACAGATTTCACTTCCGTATGCTCTATTTACAGCACCTAATGTATTGGTACAAGATGGATCGCGTAAATATAGGAACTGATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206308" ref_strand="+" ref_description="SGN-E206308 [cLEC-23-C4]">
      <seq>gatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51230" stop="50096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50930" g_stop="50396" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50930" e_stop="50396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACA</genome_strand>
        <mrna_strand>GATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209670" ref_strand="+" ref_description="SGN-E209670 [cLEC-54-H6]">
      <seq>acgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcggtaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgaagctatgttggattctgtttatgctgcgatggatcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51153" stop="50097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50853" g_stop="50397" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209670" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50853" e_stop="50397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAAC</genome_strand>
        <mrna_strand>ACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGGTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGAAGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214052" ref_strand="+" ref_description="SGN-E214052 [cLEC-80-I11]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttnacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50399" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="769" r_length="690" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214052" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT-ACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTNACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213919" ref_strand="+" ref_description="SGN-E213919 [cLEC-80-A23]">
      <seq>cataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacnagatggatcgcgtcaatataggaacttatttgatgctatgttgggatctgtttatgctgcgatggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50399" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="697" r_length="689" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213919" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACNAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGGATCTGTTTATGCTGCGATGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213801" ref_strand="+" ref_description="SGN-E213801 [cLEC-76-C16]">
      <seq>aacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51352" stop="50099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51052" g_stop="50399" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51052" e_stop="50399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</genome_strand>
        <mrna_strand>AACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214031" ref_strand="+" ref_description="SGN-E214031 [cLEC-80-P20]">
      <seq>aacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51352" stop="50099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51052" g_stop="50399" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51052" e_stop="50399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</genome_strand>
        <mrna_strand>AACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210370" ref_strand="+" ref_description="SGN-E210370 [cLEC-35-B24]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="50099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50399" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201802" ref_strand="+" ref_description="SGN-E201802 [cLEC-11-N3]">
      <seq>agactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51295" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50995" g_stop="50400" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50995" e_stop="50400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</genome_strand>
        <mrna_strand>AGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201335" ref_strand="+" ref_description="SGN-E201335 [cLEC-4-C6]">
      <seq>gatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51230" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50930" g_stop="50400" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50930" e_stop="50400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</genome_strand>
        <mrna_strand>GATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210170" ref_strand="+" ref_description="SGN-E210170 [cLEC-40-P14]">
      <seq>acacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51179" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50879" g_stop="50400" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50879" e_stop="50400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</genome_strand>
        <mrna_strand>ACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200216" ref_strand="+" ref_description="SGN-E200216 [cLEC-12-I13]">
      <seq>taaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51128" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50828" g_stop="50400" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50828" e_stop="50400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</genome_strand>
        <mrna_strand>TAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214826" ref_strand="+" ref_description="SGN-E214826 [cLEC-79-P2]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttgggattctgttatgctgcgatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50401" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="766" r_length="687" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214826" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTT-GGATTCTGTTTATGCTGCGATGGATC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGGATTCTG-TTATGCTGCGATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213182" ref_strand="+" ref_description="SGN-E213182 [cLEC-72-B17]">
      <seq>aggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtatccaggacagatttcacttccgtatgctctttttcagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgntgggatctgtttatgctgcgatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52080" stop="50101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51780" g_stop="51746" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50401" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="720" r_length="685" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213182" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51780" e_stop="51746"/>
          <exon e_start="51087" e_stop="50401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATC</genome_strand>
        <mrna_strand>AGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGT-ATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT-CAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGNTGGGATCTGTTTATGCTGCGATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210685" ref_strand="+" ref_description="SGN-E210685 [cLEC-68-B6]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctgggtatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggaattctgttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="765" r_length="686" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210685" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGG-ATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGGTATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGAATTCTG-TTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210842" ref_strand="+" ref_description="SGN-E210842 [cLEC-68-F18]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="763" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210842" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211080" ref_strand="+" ref_description="SGN-E211080 [cLEC-69-D13]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatangaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="762" r_length="686" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211080" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212384" ref_strand="+" ref_description="SGN-E212384 [cLEC-74-M24]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="762" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212384" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212657" ref_strand="+" ref_description="SGN-E212657 [cLEC-73-K7]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggaatctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="762" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212657" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGAATCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212159" ref_strand="+" ref_description="SGN-E212159 [cLEC-75-F20]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatangaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="760" r_length="685" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212159" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213233" ref_strand="+" ref_description="SGN-E213233 [cLEC-72-F24]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="761" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213233" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211390" ref_strand="+" ref_description="SGN-E211390 [cLEC-67-K13]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="761" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211698" ref_strand="+" ref_description="SGN-E211698 [cLEC-67-P22]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacnagatggatcgcgtcaatatangaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="759" r_length="686" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACNAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212815" ref_strand="+" ref_description="SGN-E212815 [cLEC-73-M19]">
      <seq>tcgtgccgaattcggcacgagatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatangaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="94" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="780" r_length="686" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212815" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213106" ref_strand="+" ref_description="SGN-E213106 [cLEC-72-A5]">
      <seq>ggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtncatatangaacttatttgatgctatgntggatttctgttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52113" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51813" g_stop="51746" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="753" r_length="685" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213106" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51813" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>GGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTNCATATANGAACTTATTTGATGCTATGNTGGATTTCTGTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212224" ref_strand="+" ref_description="SGN-E212224 [cLEC-75-C8]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="752" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212996" ref_strand="+" ref_description="SGN-E212996 [cLEC-72-E8]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="752" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213373" ref_strand="+" ref_description="SGN-E213373 [cLEC-71-O17]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgntggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="736" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213373" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211874" ref_strand="+" ref_description="SGN-E211874 [cLEC-66-P22]">
      <seq>cataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50402" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="694" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213896" ref_strand="+" ref_description="SGN-E213896 [cLEC-76-J24]">
      <seq>ggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51354" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51054" g_stop="50402" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51054" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>GGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214407" ref_strand="+" ref_description="SGN-E214407 [cLEC-77-K22]">
      <seq>ttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51346" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51046" g_stop="50402" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51046" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>TTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214583" ref_strand="+" ref_description="SGN-E214583 [cLEC-79-L4]">
      <seq>tcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataagaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51244" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50944" g_stop="50402" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50944" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>TCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAAGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214324" ref_strand="+" ref_description="SGN-E214324 [cLEC-77-P4]">
      <seq>gaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaagtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtncatataagaacttatttgatgctatgttggattctgtttatgctgcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51155" stop="50102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50855" g_stop="50402" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214324" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50855" e_stop="50402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</genome_strand>
        <mrna_strand>GAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTNCATATAAGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211084" ref_strand="+" ref_description="SGN-E211084 [cLEC-69-F17]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50404" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="749" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGG</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211827" ref_strand="+" ref_description="SGN-E211827 [cLEC-66-B4]">
      <seq>aaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacnagatggatcgcgtcaatatangaacttatttgatgctatgntggattctgtttatgctgcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52102" stop="50104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51802" g_stop="51746" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50404" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="741" r_length="684" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211827" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51802" e_stop="51746"/>
          <exon e_start="51087" e_stop="50404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGG</genome_strand>
        <mrna_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACNAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTGCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215100" ref_strand="+" ref_description="SGN-E215100 [cLEC-78-J17]">
      <seq>tcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctcttttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttanttgatgctatgttggaatctgtttatgctgcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50404" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="695" r_length="684" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215100" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC-TTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGG</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTANTTGATGCTATGTTGGAATCTGTTTATGCTGCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207636" ref_strand="+" ref_description="SGN-E207636 [cLEC-32-B9]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctgcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="50104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50404" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGG</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722151" ref_strand="+" ref_description="SGN-E722151 [FC16BE09]">
      <seq>gggcgattggcggccaatcggccgaattgaccaaaaacattacttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52148" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51842" g_stop="51746" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="128" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="806" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E722151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51842" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>CAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210811" ref_strand="+" ref_description="SGN-E210811 [cLEC-68-J1]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttcagcacctaatgtagtggtacaagatggatcgcgtcaatataagaacttatttgatgctatgttggattctgtttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="759" r_length="677" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210811" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT-CAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAAGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211368" ref_strand="+" ref_description="SGN-E211368 [cLEC-67-A17]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatangaacttatttgatgctatgttggaatctgtttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="754" r_length="678" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGAACTTATTTGATGCTATGTTGGAATCTGTTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210622" ref_strand="+" ref_description="SGN-E210622 [cLEC-68-A18]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatanggacttatttgatgctatgttgggattctgttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="749" r_length="677" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210622" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTT-GGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGGACTTATTTGATGCTATGTTGGGATTCTG-TTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212315" ref_strand="+" ref_description="SGN-E212315 [cLEC-74-C15]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="750" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212084" ref_strand="+" ref_description="SGN-E212084 [cLEC-75-I21]">
      <seq>tggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtncatatangaacttatttgatgctatgntggattctgtttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52114" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51814" g_stop="51746" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="747" r_length="678" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212084" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51814" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTNCATATANGAACTTATTTGATGCTATGNTGGATTCTGTTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211140" ref_strand="+" ref_description="SGN-E211140 [cLEC-69-P8]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50410" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="744" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210913" ref_strand="+" ref_description="SGN-E210913 [cLEC-69-G20]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtattggtacaagatggatcgcgtcaatataggaacttatttgatgctatggtggattctgtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50411" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="736" r_length="677" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210913" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCT</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTATTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGGTGGATTCTGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282672" ref_strand="+" ref_description="SGN-E282672 [cLER-15-B15]">
      <seq>gaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51100" stop="50111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50800" g_stop="50411" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E282672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50800" e_stop="50411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCT</genome_strand>
        <mrna_strand>GAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201234" ref_strand="+" ref_description="SGN-E201234 [cLEC-10-G12]">
      <seq>ccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggattctgtttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51217" stop="50112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50917" g_stop="50412" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50917" e_stop="50412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGC</genome_strand>
        <mrna_strand>CCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212214" ref_strand="+" ref_description="SGN-E212214 [cLEC-75-O13]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataagtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattacgacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttatgaacgatgttagatggtttactgatgcaattgttgggtttgtgaaggatacacgtgcacctttcgctcgatacatttagtcctattttagctattctggctatccacgacagatttcacttccgtatgctctttttacagcacctaatgtagtggtactagatggatcgcgtcaatatacgaaactatttgatgctatgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50422" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="732" r_length="666" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212214" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTT-GCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAAGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTACGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTATGAACGATGTTAGATGGTTTACTGATGCAATTGTTGGGTTTGTGAAGGATACACGTGCACCTTTCGCTCGAT-ACATTTAGTCCTATTTTAGCTATTCTGGCTATCCACGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACTAGATGGATCGCGTCAATATACGAAACTATTTGATGCTATGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203731" ref_strand="+" ref_description="SGN-E203731 [cLEC-17-K7]">
      <seq>acagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51161" stop="50122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50861" g_stop="50422" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50861" e_stop="50422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATT</genome_strand>
        <mrna_strand>ACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211976" ref_strand="+" ref_description="SGN-E211976 [cLEC-66-F1]">
      <seq>tgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51291" stop="50126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50991" g_stop="50426" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50991" e_stop="50426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTG</genome_strand>
        <mrna_strand>TGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211708" ref_strand="+" ref_description="SGN-E211708 [cLEC-66-C7]">
      <seq>tctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccangacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52129" stop="50128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51829" g_stop="51746" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50428" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="744" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211708" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51829" e_stop="51746"/>
          <exon e_start="51087" e_stop="50428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGT</genome_strand>
        <mrna_strand>TCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCANGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213288" ref_strand="+" ref_description="SGN-E213288 [cLEC-71-A18]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtncatatangaacttatttgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50430" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="733" r_length="657" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213288" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTNCATATANGAACTTATTTGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214354" ref_strand="+" ref_description="SGN-E214354 [cLEC-77-I19]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccangacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtncatatangaacttatttgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50430" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="730" r_length="658" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214354" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCANGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTNCATATANGAACTTATTTGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210927" ref_strand="+" ref_description="SGN-E210927 [cLEC-69-M20]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaaccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatatangaacttatttgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50430" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="729" r_length="657" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210927" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAA-CCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATANGAACTTATTTGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211263" ref_strand="+" ref_description="SGN-E211263 [cLEC-70-A18]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataagaacttatttgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50430" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="724" r_length="658" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211263" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTAT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAAGAACTTATTTGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206065" ref_strand="+" ref_description="SGN-E206065 [cLEC-20-J12]">
      <seq>attctgaagttatacagctctacaagtcgagaaacattagaagactgaggcgttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51336" stop="50130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51036" g_stop="50430" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206065" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51036" e_stop="50430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTAT</genome_strand>
        <mrna_strand>ATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCGTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209617" ref_strand="+" ref_description="SGN-E209617 [cLEC-54-K12]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="50132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50432" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCT</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377646" ref_strand="+" ref_description="SGN-E377646 [TUS-20-K14]">
      <seq>catcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52119" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51819" g_stop="51746" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50433" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="729" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E377646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51819" e_stop="51746"/>
          <exon e_start="51087" e_stop="50433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGC</genome_strand>
        <mrna_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208128" ref_strand="+" ref_description="SGN-E208128 [cLEC-34-J22]">
      <seq>tatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttatttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51367" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51067" g_stop="50433" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51067" e_stop="50433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGC</genome_strand>
        <mrna_strand>TATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335419" ref_strand="+" ref_description="SGN-E335419 [cTOE-2-J17]">
      <seq>tttctttaaatttttcaagtttagaaagaattggctaagtttgtaaaaccccactttctgcttgttattgaacagaggctcaactaggtgtttgttatggaatgatggggaacaaccttgccatcacattctgaagttataccagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgcctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtaccagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaatttgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgttagtggtacagaatggaatcgcgtcaatataggaacttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51461" stop="50137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51161" g_stop="50437" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E335419" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51161" e_stop="50437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTAAATTTTTCAAGTTTAG-AAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAA-CTTGCCATCACATTCTGAAGTTATA-CAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCG-CTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTA-CAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAA-TTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATG-TAGTGGTACAAGATGG-ATCGCGTCAATATAGGAACTTATTTG</genome_strand>
        <mrna_strand>TTTCTTTAAATTTTTCAAGTTTAGAAAGAATTGGCTAAGTTTGTAAAACCCCACTTTCTGCTTGTTATTGAACAGAGGCTCAACTAGGTGTTTGTTATGGAATGATGGGGAACAACCTTGCCATCACATTCTGAAGTTATACCAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACCAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTTAGTGGTACAGAATGGAATCGCGTCAATATAGGAACTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205200" ref_strand="+" ref_description="SGN-E205200 [cLEC-16-F2]">
      <seq>acatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggtacaagatggatcgcgtcaatataggaacttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51198" stop="50138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50898" g_stop="50438" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50898" e_stop="50438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTT</genome_strand>
        <mrna_strand>ACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206883" ref_strand="+" ref_description="SGN-E206883 [cLEC-33-F6]">
      <seq>ttgaacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtaatggtacaagatggatcgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51395" stop="50156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51095" g_stop="50456" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206883" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51095" e_stop="50456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGT</genome_strand>
        <mrna_strand>TTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAATGGTACAAGATGGATCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374667" ref_strand="+" ref_description="SGN-E374667 [TUS-15-N17]">
      <seq>attattgtgcttctaggattacttgtcgtcaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaagacttccaaatgtaaatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaatgtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttatatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttaactattctggtaatccaggacagatttcactttcgtatgctctttttacagcacctaatgtattggtacaagatggatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52094" stop="50157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51794" g_stop="51746" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50457" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="680" r_length="631" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E374667" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51794" e_stop="51746"/>
          <exon e_start="51087" e_stop="50457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCG</genome_strand>
        <mrna_strand>ATTATTGTGCTTCTAGGATTACTTGTCGTCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAAGACTTCCAAATGTAAATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAATGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTATATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAACTATTCTGGTAATCCAGGACAGATTTCACTTTCGTATGCTCTTTTTACAGCACCTAATGTATTGGTACAAGATGGATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339498" ref_strand="+" ref_description="SGN-E339498 [cTOE-16-E15]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgtagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50472" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="666" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E339498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGT</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213308" ref_strand="+" ref_description="SGN-E213308 [cLEC-71-F17]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50478" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="692" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214178" ref_strand="+" ref_description="SGN-E214178 [cLEC-77-G23]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50478" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="686" r_length="610" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214178" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212855" ref_strand="+" ref_description="SGN-E212855 [cLEC-73-O2]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctncacgtctgtagacatgacgttgattggcaattctatcccacatcacaggnntcatttangaacgatgttagatggtttactgatccaattgntgggttttttgaggatacacgtgcacctttgctcgttaacatttatcccttatttagctattctggtaatcccagacagatttcactccgtatgctcttttacagcacctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50478" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="682" r_length="607" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212855" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTNCACGTCTGTAGACATGACGTTGATTGGCAATTC-TATCCCACATCACAGGNNTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGNTGGGTTTTTTGAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCCTTATTTAGCTATTCTGGTAATCCCAGACAGATTTCAC-TCCGTATGCTC-TTTTACAGCACCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213596" ref_strand="+" ref_description="SGN-E213596 [cLEC-76-E15]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50478" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="682" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210588" ref_strand="+" ref_description="SGN-E210588 [cLEC-68-E5]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50478" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="676" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212382" ref_strand="+" ref_description="SGN-E212382 [cLEC-74-M20]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccangacagatttcacttccgtatgctctttttacagcacctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50479" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="685" r_length="609" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATG</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCANGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214227" ref_strand="+" ref_description="SGN-E214227 [cLEC-77-I18]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="687" r_length="608" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214227" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214675" ref_strand="+" ref_description="SGN-E214675 [cLEC-79-B9]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctcttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="686" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214675" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC-TTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214145" ref_strand="+" ref_description="SGN-E214145 [cLEC-80-N16]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctgggtatccaggacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="684" r_length="608" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214145" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGGTATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211604" ref_strand="+" ref_description="SGN-E211604 [cLEC-67-I14]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccangacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="680" r_length="608" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211604" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCANGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213053" ref_strand="+" ref_description="SGN-E213053 [cLEC-72-L1]">
      <seq>tggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52114" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51814" g_stop="51746" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="676" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213053" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51814" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212174" ref_strand="+" ref_description="SGN-E212174 [cLEC-75-L20]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="673" r_length="608" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212174" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202451" ref_strand="+" ref_description="SGN-E202451 [cLEC-6-C20]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacattcacataacataggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttacaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgctgggtatttgagggatacacgtgcacctttgctcgttaacattcatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="658" r_length="608" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202451" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTACAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGCTGGGTATTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTCATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213909" ref_strand="+" ref_description="SGN-E213909 [cLEC-76-P4]">
      <seq>aaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51242" stop="50180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50942" g_stop="50480" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50942" e_stop="50480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</genome_strand>
        <mrna_strand>AAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201533" ref_strand="+" ref_description="SGN-E201533 [cLEC-4-P3]">
      <seq>tttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacattcatccttattttagctattctggtaatccatgacagatttcacttgcgtatgctctttttacagcacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51143" stop="50181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50843" g_stop="50481" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201533" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50843" e_stop="50481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAA</genome_strand>
        <mrna_strand>TTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTCATCCTTATTTTAGCTATTCTGGTAATCCATGACAGATTTCACTTGCGTATGCTCTTTTTACAGCACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201175" ref_strand="+" ref_description="SGN-E201175 [cLEC-10-A23]">
      <seq>gagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51173" stop="50185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50873" g_stop="50485" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50873" e_stop="50485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCAC</genome_strand>
        <mrna_strand>GAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204222" ref_strand="+" ref_description="SGN-E204222 [cLEC-13-F11]">
      <seq>gcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaagacagatttcacttccgtatgctctttttacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52086" stop="50187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51786" g_stop="51746" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50487" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="642" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204222" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51786" e_stop="51746"/>
          <exon e_start="51087" e_stop="50487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGC</genome_strand>
        <mrna_strand>GCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAAGACAGATTTCACTTCCGTATGCTCTTTTTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211492" ref_strand="+" ref_description="SGN-E211492 [cLEC-67-N9]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctgggtatccangacagatttcacttccgtatgctctttttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50488" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="673" r_length="600" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211492" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAG</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGGTATCCANGACAGATTTCACTTCCGTATGCTCTTTTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205096" ref_strand="+" ref_description="SGN-E205096 [cLEC-16-G5]">
      <seq>acatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctctttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51198" stop="50189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50898" g_stop="50489" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50898" e_stop="50489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACA</genome_strand>
        <mrna_strand>ACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211501" ref_strand="+" ref_description="SGN-E211501 [cLEC-67-P23]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggagaagctggtttgggaaatgacattaaagtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgataacatttatccttattttagctattctggtaatccaggacagatttcacttacgnatgctctttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50490" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="671" r_length="598" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211501" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTAC</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGAGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGATAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTACGNATGCTCTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213987" ref_strand="+" ref_description="SGN-E213987 [cLEC-80-B6]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttggggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctgggtatccaggacagatttcacttccgtatgctcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50491" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="680" r_length="598" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213987" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTT-GGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGGTATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214361" ref_strand="+" ref_description="SGN-E214361 [cLEC-77-M13]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtatccaggacagatttcacttccgtatgctcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50491" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="673" r_length="596" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214361" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGT-ATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214422" ref_strand="+" ref_description="SGN-E214422 [cLEC-77-B1]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatcccttatttagctattctggtaatccaggacagatttcacttccgtatgctcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50491" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="669" r_length="597" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214422" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCCTTATTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211131" ref_strand="+" ref_description="SGN-E211131 [cLEC-69-N2]">
      <seq>atggctacctcacaaatagctattattgtgcttctaagattacttgactccaccaacattcacataacatacgctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgagtacagaataacgttatagatttctggcctcatgttaaaattaagtatatagctggtggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacatctgtatacatgacgatgattggcaattcttatccaccatcacatggttcatttaagaaccatgttagatggattactgatccaattgctgggtttttgagggatacacgagcacctttgctcgttgacatttatccttattttagctattctggaaatccaggacagatttcacttccgtatgctcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52115" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="51746" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50491" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="667" r_length="597" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211131" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="51746"/>
          <exon e_start="51087" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</genome_strand>
        <mrna_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAAGATTACTTGACTCCACCAACATTCACATAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGAGTACAGAATAACGTTATAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGGTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACATCTGTATACATGACGATGATTGGCAATTCTTATCCACCATCACATGGTTCATTTAAGAACCATGTTAGATGGATTACTGATCCAATTGCTGGGTTTTTGAGGGATACACGAGCACCTTTGCTCGTTGACATTTATCCTTATTTTAGCTATTCTGGAAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212016" ref_strand="+" ref_description="SGN-E212016 [cLEC-66-B12]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50491" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="662" r_length="596" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212016" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214232" ref_strand="+" ref_description="SGN-E214232 [cLEC-77-K18]">
      <seq>ccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51217" stop="50191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50917" g_stop="50491" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50917" e_stop="50491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</genome_strand>
        <mrna_strand>CCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211460" ref_strand="+" ref_description="SGN-E211460 [cLEC-67-D5]">
      <seq>gctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52097" stop="50192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51797" g_stop="51746" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50492" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="648" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51797" e_stop="51746"/>
          <exon e_start="51087" e_stop="50492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT</genome_strand>
        <mrna_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207441" ref_strand="+" ref_description="SGN-E207441 [cLEC-36-C1]">
      <seq>gagctttgaatgcactaagaggatcaaacactgaagggatattaggacttccaaatgtagatgtgaaacacatttcattatgggatggaacacgcgagatggtgggtacagaagaacgttatagatttatggcctcatgttaaaattaagtatatagctgttggtaatgaaatcatgcctggaactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggctcatttaggaacgatgttagatggtttactgatccaatcgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtcatccaggacagatttcacttccgtatgctcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51267" stop="50192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50967" g_stop="50492" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207441" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50967" e_stop="50492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTC-TTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT</genome_strand>
        <mrna_strand>GAGCTTTGAATGCACTAAGAGGATCAAACACTGAAGGGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCATTATGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTATAGATTTATGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCATGCCTGGAACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGCTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATCGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTCATCCAGGACAGATTTCACTTCCGTATGCTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212334" ref_strand="+" ref_description="SGN-E212334 [cLEC-74-M15]">
      <seq>tcgtgccgaattcggcacgagacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttattttagctattctgggtatccaggacagatttcacttccgtatgctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52126" stop="50194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="96" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50494" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="689" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTT</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTCTGGGTATCCAGGACAGATTTCACTTCCGTATGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212287" ref_strand="+" ref_description="SGN-E212287 [cLEC-75-F14]">
      <seq>atagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatcccttatttagctattctggtaatccaggacagatttcacttccgtatgctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52100" stop="50194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51800" g_stop="51746" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50494" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="649" r_length="594" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51800" e_stop="51746"/>
          <exon e_start="51087" e_stop="50494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTT</genome_strand>
        <mrna_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCCTTATTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210954" ref_strand="+" ref_description="SGN-E210954 [cLEC-69-J1]">
      <seq>attacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccangacagatttcacttccgtatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52077" stop="50196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51777" g_stop="51746" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50496" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="624" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210954" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51777" e_stop="51746"/>
          <exon e_start="51087" e_stop="50496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCT</genome_strand>
        <mrna_strand>ATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCANGACAGATTTCACTTCCGTATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210048" ref_strand="+" ref_description="SGN-E210048 [cLEC-40-I11]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccggatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50497" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="670" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210048" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214334" ref_strand="+" ref_description="SGN-E214334 [cLEC-77-A19]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50497" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="667" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214334" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214305" ref_strand="+" ref_description="SGN-E214305 [cLEC-77-J4]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttganggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50497" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="663" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214305" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGANGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207958" ref_strand="+" ref_description="SGN-E207958 [cLEC-34-N3]">
      <seq>tgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaatccaggacagatttcacttccgtatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51291" stop="50197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50991" g_stop="50497" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50991" e_stop="50497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</genome_strand>
        <mrna_strand>TGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209433" ref_strand="+" ref_description="SGN-E209433 [cLEC-53-B12]">
      <seq>tctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtgatccaggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51318" stop="50216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51018" g_stop="50516" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51018" e_stop="50516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAG</genome_strand>
        <mrna_strand>TCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTGATCCAGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213525" ref_strand="+" ref_description="SGN-E213525 [cLEC-71-M1]">
      <seq>tactggaatattccgcccttgacatgaatactattggaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacaaggttcatttangaacgatngtagatggnttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgtaancatttatccttattttagctattctggtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52084" stop="50224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51778" g_stop="51746" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="72" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50524" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="636" r_length="564" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213525" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51778" e_stop="51746"/>
          <exon e_start="51087" e_stop="50524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATC</genome_strand>
        <mrna_strand>GATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAAGGTTCATTTANGAACGATNGTAGATGGNTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTAANCATTTATCCTTATTTTAGCTATTCTGGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210050" ref_strand="+" ref_description="SGN-E210050 [cLEC-40-I15]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50525" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="635" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201846" ref_strand="+" ref_description="SGN-E201846 [cLEC-18-C13]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacgttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttaactattctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50528" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="627" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201846" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTAC-TTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACGTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAACTATTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214988" ref_strand="+" ref_description="SGN-E214988 [cLEC-78-N16]">
      <seq>tggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52114" stop="50229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51814" g_stop="51746" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50529" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="628" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51814" e_stop="51746"/>
          <exon e_start="51087" e_stop="50529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGG</genome_strand>
        <mrna_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213413" ref_strand="+" ref_description="SGN-E213413 [cLEC-71-M8]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaangatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="640" r_length="558" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213413" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAANGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213765" ref_strand="+" ref_description="SGN-E213765 [cLEC-76-G5]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacattatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="636" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213765" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACA-TTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215151" ref_strand="+" ref_description="SGN-E215151 [cLEC-78-N2]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="637" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215151" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208829" ref_strand="+" ref_description="SGN-E208829 [cLEC-51-C11]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="634" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207384" ref_strand="+" ref_description="SGN-E207384 [cLEC-36-G6]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="630" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209734" ref_strand="+" ref_description="SGN-E209734 [cLEC-52-E22]">
      <seq>tcacaaatttctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaccctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="619" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209734" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TCACAAATTTCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204214" ref_strand="+" ref_description="SGN-E204214 [cLEC-13-B15]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="619" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205554" ref_strand="+" ref_description="SGN-E205554 [cLEC-21-E19]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccagcattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacccttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="617" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205554" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAGCATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCCTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201870" ref_strand="+" ref_description="SGN-E201870 [cLEC-18-M19]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgcgaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttaactattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="617" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201870" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCGACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAACTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206179" ref_strand="+" ref_description="SGN-E206179 [cLEC-29-G3]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="617" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210537" ref_strand="+" ref_description="SGN-E210537 [cLEC-35-P3]">
      <seq>ttacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52076" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51776" g_stop="51746" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="589" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51776" e_stop="51746"/>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>TTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206191" ref_strand="+" ref_description="SGN-E206191 [cLEC-29-K7]">
      <seq>cataacataggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50530" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="566" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212341" ref_strand="+" ref_description="SGN-E212341 [cLEC-74-A4]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatcccttatttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="636" r_length="557" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212341" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCCTTATTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212175" ref_strand="+" ref_description="SGN-E212175 [cLEC-75-L22]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="634" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212844" ref_strand="+" ref_description="SGN-E212844 [cLEC-73-I22]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaaatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="632" r_length="556" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAA-ATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212608" ref_strand="+" ref_description="SGN-E212608 [cLEC-74-L2]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="633" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212608" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214892" ref_strand="+" ref_description="SGN-E214892 [cLEC-78-K2]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="633" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214892" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208110" ref_strand="+" ref_description="SGN-E208110 [cLEC-34-F4]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="632" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213764" ref_strand="+" ref_description="SGN-E213764 [cLEC-76-G3]">
      <seq>atggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttatgaacgatgttagatgggttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgctaacatttatccttatattagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52115" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="51746" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="627" r_length="557" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213764" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTATGAACGATGTTAGATGGGTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGCTAACATTTATCCTTATATTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201880" ref_strand="+" ref_description="SGN-E201880 [cLEC-18-C7]">
      <seq>atggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52115" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="51746" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="627" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208852" ref_strand="+" ref_description="SGN-E208852 [cLEC-51-C8]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50531" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="623" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209388" ref_strand="+" ref_description="SGN-E209388 [cLEC-53-K24]">
      <seq>acaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51351" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51051" g_stop="50531" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51051" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>ACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205587" ref_strand="+" ref_description="SGN-E205587 [cLEC-21-I6]">
      <seq>agttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51329" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51029" g_stop="50531" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51029" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>AGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212460" ref_strand="+" ref_description="SGN-E212460 [cLEC-74-P10]">
      <seq>aacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttattttagctattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51304" stop="50231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51004" g_stop="50531" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212460" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51004" e_stop="50531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</genome_strand>
        <mrna_strand>AACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212370" ref_strand="+" ref_description="SGN-E212370 [cLEC-74-I22]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttacatttatccttattttagctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50532" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="632" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212370" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTTAGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214499" ref_strand="+" ref_description="SGN-E214499 [cLEC-77-L12]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgntagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatccttattttagctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50532" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="628" r_length="556" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214499" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTC</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGNTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211917" ref_strand="+" ref_description="SGN-E211917 [cLEC-66-A20]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgntaacatttatcccttatttagctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50532" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="617" r_length="556" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211917" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTC</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGNTAACATTTATCCCTTATTTAGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213297" ref_strand="+" ref_description="SGN-E213297 [cLEC-71-K16]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgntagatggtttactgantcaattgttgggtttttgagggatacacgtgcacctttgctcgntacatttatccttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50540" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="626" r_length="547" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213297" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGNTAGATGGTTTACTGANTCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGNT-ACATTTATCCTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215161" ref_strand="+" ref_description="SGN-E215161 [cLEC-78-P22]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttacatttatccttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50540" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="622" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215161" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214190" ref_strand="+" ref_description="SGN-E214190 [cLEC-77-K9]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatccttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50540" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="614" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214190" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211748" ref_strand="+" ref_description="SGN-E211748 [cLEC-66-O21]">
      <seq>atagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttacatttatccttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52100" stop="50240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51800" g_stop="51746" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50540" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="602" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211748" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51800" e_stop="51746"/>
          <exon e_start="51087" e_stop="50540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTT</genome_strand>
        <mrna_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTT-ACATTTATCCTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212371" ref_strand="+" ref_description="SGN-E212371 [cLEC-74-I24]">
      <seq>aatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtacatgtgaaacacatttcttctgggatggaacacgcgagatggtgggaacagaagaacgttacagatttctggcctcatgttaaaattaagtatataactgatggtaatgaaatcagccctgatactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttacgaacgatgttagatggcttactgatccaattgttgggtttttgagggatacacgagcacctttgctcgttaacatttatccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51362" stop="50243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51062" g_stop="50543" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212371" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51062" e_stop="50543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTAT</genome_strand>
        <mrna_strand>AATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTACATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGAACAGAAGAACGTTACAGATTTCTGGCCTCATGTTAAAATTAAGTATATAACTGATGGTAATGAAATCAGCCCTGATACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTACGAACGATGTTAGATGGCTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGAGCACCTTTGCTCGTTAACATTTATCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211195" ref_strand="+" ref_description="SGN-E211195 [cLEC-70-D9]">
      <seq>tctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52129" stop="50245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51829" g_stop="51746" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50545" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="627" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51829" e_stop="51746"/>
          <exon e_start="51087" e_stop="50545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTT</genome_strand>
        <mrna_strand>TCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214313" ref_strand="+" ref_description="SGN-E214313 [cLEC-77-L8]">
      <seq>catcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgntacatttatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52119" stop="50245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51819" g_stop="51746" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50545" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="616" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214313" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51819" e_stop="51746"/>
          <exon e_start="51087" e_stop="50545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTT</genome_strand>
        <mrna_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGNT-ACATTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202570" ref_strand="+" ref_description="SGN-E202570 [cLEC-6-N10]">
      <seq>gatgtgaaacacattgcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgccggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaacgcaatcggtgaagctggttagggatatgacattacggtctcaacgtctgttgacatgacgttgattggcaattgttatccaccatcacacggttcatttaagaacgacgttagatggttcactgatccaattgacgggttcctgagggatacacgtgcacctttgctcggtaacatctatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51208" stop="50245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50908" g_stop="50545" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202570" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50908" e_stop="50545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTT</genome_strand>
        <mrna_strand>GATGTGAAACACATTGCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGCCGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAACGCAATCGGTGAAGCTGGTTAGGGATATGACATTACGGTCTCAACGTCTGTTGACATGACGTTGATTGGCAATTGTTATCCACCATCACACGGTTCATTTAAGAACGACGTTAGATGGTTCACTGATCCAATTGACGGGTTCCTGAGGGATACACGTGCACCTTTGCTCGGTAACATCTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215062" ref_strand="+" ref_description="SGN-E215062 [cLEC-78-I16]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgaaggatacacgtgcacctttgctcgttaacatttatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50546" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="621" r_length="542" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215062" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAAGGATACACGTGCACCTTTGCTCGTTAACATTTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212046" ref_strand="+" ref_description="SGN-E212046 [cLEC-66-N12]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50547" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="607" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCC</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213514" ref_strand="+" ref_description="SGN-E213514 [cLEC-71-E9]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgaggggatacacgtgcacctttgctcgttacatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50548" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="619" r_length="540" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213514" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGA-GGGATACACGTGCACCTTTGCTCGTTAACATTTATC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGGATACACGTGCACCTTTGCTCGTT-ACATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688427" ref_strand="+" ref_description="SGN-E688427 [t3_tus_50_g22]">
      <seq>caaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgtttacatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52123" stop="50248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51823" g_stop="51746" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50548" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="618" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E688427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51823" e_stop="51746"/>
          <exon e_start="51087" e_stop="50548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATC</genome_strand>
        <mrna_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTTACATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550740" ref_strand="+" ref_description="SGN-E550740 [TUS-50-G22]">
      <seq>caaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52123" stop="50248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51823" g_stop="51746" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50548" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="618" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E550740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51823" e_stop="51746"/>
          <exon e_start="51087" e_stop="50548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATC</genome_strand>
        <mrna_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550743" ref_strand="+" ref_description="SGN-E550743 [TUS-50-G4]">
      <seq>aaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacacctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgtttacatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52102" stop="50248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51802" g_stop="51746" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50548" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="597" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E550743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51802" e_stop="51746"/>
          <exon e_start="51087" e_stop="50548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATC</genome_strand>
        <mrna_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACACCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTTACATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688413" ref_strand="+" ref_description="SGN-E688413 [t3_tus_50_g04]">
      <seq>aaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacacctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgtttacatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52102" stop="50248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51802" g_stop="51746" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50548" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="597" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E688413" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51802" e_stop="51746"/>
          <exon e_start="51087" e_stop="50548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATC</genome_strand>
        <mrna_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACACCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTTACATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267562" ref_strand="+" ref_description="SGN-E267562 [cLEI-8-G6]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50549" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="600" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E267562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTAT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210538" ref_strand="+" ref_description="SGN-E210538 [cLEC-35-P5]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcgttaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50552" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="601" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATT</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550792" ref_strand="+" ref_description="SGN-E550792 [TUS-50-L16]">
      <seq>cacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagcttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52105" stop="50260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51805" g_stop="51746" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50560" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="586" r_length="526" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E550792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51805" e_stop="51746"/>
          <exon e_start="51087" e_stop="50560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCG</genome_strand>
        <mrna_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC--TTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688501" ref_strand="+" ref_description="SGN-E688501 [t3_tus_50_l16]">
      <seq>cacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagcttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52105" stop="50260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51805" g_stop="51746" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50560" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="586" r_length="526" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E688501" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51805" e_stop="51746"/>
          <exon e_start="51087" e_stop="50560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCG</genome_strand>
        <mrna_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC--TTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303428" ref_strand="+" ref_description="SGN-E303428 [cLEX-2-L16]">
      <seq>cacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgccagatggggggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgctggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52105" stop="50262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51805" g_stop="51746" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50562" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="586" r_length="526" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E303428" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51805" e_stop="51746"/>
          <exon e_start="51087" e_stop="50562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCT</genome_strand>
        <mrna_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGGGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGCTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213627" ref_strand="+" ref_description="SGN-E213627 [cLEC-76-C4]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatccgtgaagctggtttgtgaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaaccatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50563" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="597" r_length="525" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213627" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGC</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCCGTGAAGCTGGTTTGTGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACCATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208098" ref_strand="+" ref_description="SGN-E208098 [cLEC-34-B4]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacaaggttcatttatgaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50563" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="597" r_length="525" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGC</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAAGGTTCATTTATGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208828" ref_strand="+" ref_description="SGN-E208828 [cLEC-51-A17]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttggggttttgagggatacaccgtgcacctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50563" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="576" r_length="526" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208828" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACA-CGTGCACCTTTGC</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGGTTTTGAGGGATACACCGTGCACCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207385" ref_strand="+" ref_description="SGN-E207385 [cLEC-36-G8]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50566" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="598" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207339" ref_strand="+" ref_description="SGN-E207339 [cLEC-36-A15]">
      <seq>aaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52102" stop="50266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51802" g_stop="51746" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50566" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="579" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51802" e_stop="51746"/>
          <exon e_start="51087" e_stop="50566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTT</genome_strand>
        <mrna_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204319" ref_strand="+" ref_description="SGN-E204319 [cLEC-13-I15]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50567" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="598" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201104" ref_strand="+" ref_description="SGN-E201104 [cLEC-10-C20]">
      <seq>attgaacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51396" stop="50267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51096" g_stop="50567" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51096" e_stop="50567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCT</genome_strand>
        <mrna_strand>ATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299835" ref_strand="+" ref_description="SGN-E299835 [cLEW-1-O5]">
      <seq>agaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51389" stop="50267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51089" g_stop="50567" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E299835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51089" e_stop="50567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCT</genome_strand>
        <mrna_strand>AGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339509" ref_strand="+" ref_description="SGN-E339509 [cTOE-16-I19]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50568" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="599" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E339509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207148" ref_strand="+" ref_description="SGN-E207148 [cLEC-30-M23]">
      <seq>tcacaaatatctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatgggttactgatccaattgttgggtttttgagggatacacgtgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50569" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="580" r_length="519" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207148" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCAC</genome_strand>
        <mrna_strand>TCACAAATATCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGGTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202432" ref_strand="+" ref_description="SGN-E202432 [cLEC-6-K17]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50570" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="600" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202437" ref_strand="+" ref_description="SGN-E202437 [cLEC-6-M17]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50570" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="595" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202437" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265050" ref_strand="+" ref_description="SGN-E265050 [cLEI-2-G18]">
      <seq>tcgccaccaacattcacataacagaggctcaaatgggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52069" stop="50270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51769" g_stop="51746" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50570" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="542" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E265050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51769" e_stop="51746"/>
          <exon e_start="51087" e_stop="50570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</genome_strand>
        <mrna_strand>TCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATGGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209102" ref_strand="+" ref_description="SGN-E209102 [cLEC-38-I5]">
      <seq>cataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50570" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="526" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206540" ref_strand="+" ref_description="SGN-E206540 [cLEC-23-J20]">
      <seq>attctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51336" stop="50270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51036" g_stop="50570" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51036" e_stop="50570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</genome_strand>
        <mrna_strand>ATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204306" ref_strand="+" ref_description="SGN-E204306 [cLEC-13-C19]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50572" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="595" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTG</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209140" ref_strand="+" ref_description="SGN-E209140 [cLEC-38-K10]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50572" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="577" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTG</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208994" ref_strand="+" ref_description="SGN-E208994 [cLEC-38-M4]">
      <seq>ttacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggatacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52076" stop="50272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51776" g_stop="51746" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50572" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="547" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51776" e_stop="51746"/>
          <exon e_start="51087" e_stop="50572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTG</genome_strand>
        <mrna_strand>TTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209928" ref_strand="+" ref_description="SGN-E209928 [cLEC-52-F20]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttgagggataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50576" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="588" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209054" ref_strand="+" ref_description="SGN-E209054 [cLEC-38-F10]">
      <seq>tgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaacgtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattttggaacgatgttagatggtttactgatccaactgttgggtttttgaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51101" stop="50280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="50580" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209054" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="50580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGA</genome_strand>
        <mrna_strand>TGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAACGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTTGGAACGATGTTAGATGGTTTACTGATCCAACTGTTGGGTTTTTGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206947" ref_strand="+" ref_description="SGN-E206947 [cLEC-33-O19]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50584" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="583" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212254" ref_strand="+" ref_description="SGN-E212254 [cLEC-75-J7]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattggtgggtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50585" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="569" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212254" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTG</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGGTGGGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205943" ref_strand="+" ref_description="SGN-E205943 [cLEC-20-I19]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50585" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="564" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTG</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215148" ref_strand="+" ref_description="SGN-E215148 [cLEC-78-L20]">
      <seq>acaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattggtggggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51351" stop="50285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51051" g_stop="50585" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215148" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51051" e_stop="50585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTG</genome_strand>
        <mrna_strand>ACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGGTGGGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212469" ref_strand="+" ref_description="SGN-E212469 [cLEC-74-A21]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggattgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacaaggatcatttatgaacgatgttagatggtttacctgatccaattcgttgggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50586" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="577" r_length="504" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212469" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTA-CTGATCCAATT-GTTGGGTTTTT</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGATTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAAGGATCATTTATGAACGATGTTAGATGGTTTACCTGATCCAATTCGTTGGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209132" ref_strand="+" ref_description="SGN-E209132 [cLEC-38-G10]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50586" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="563" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214611" ref_strand="+" ref_description="SGN-E214611 [cLEC-79-I13]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatgggttactgatccaattgttgggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50587" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="580" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214611" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGGTTACTGATCCAATTGTTGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211712" ref_strand="+" ref_description="SGN-E211712 [cLEC-66-E1]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattgttgggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50587" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="580" r_length="501" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208767" ref_strand="+" ref_description="SGN-E208767 [cLEC-51-B11]">
      <seq>acttctcattaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattgttgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52132" stop="50289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51832" g_stop="51746" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50589" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="586" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51832" e_stop="51746"/>
          <exon e_start="51087" e_stop="50589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTT</genome_strand>
        <mrna_strand>ACTTCTCATTAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213382" ref_strand="+" ref_description="SGN-E213382 [cLEC-71-C6]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtatgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50595" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="554" r_length="493" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTATGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206913" ref_strand="+" ref_description="SGN-E206913 [cLEC-33-P2]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacacgtcgagaaacattctaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaaaaacgttagagatttctggcctcatgttgaaattaaggatatagctgttggtaatgaaatcagccctgttactggcacttgcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50596" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="571" r_length="492" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206913" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTG</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACACGTCGAGAAACATTCTAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAAAACGTTAGAGATTTCTGGCCTCATGTTGAAATTAAGGATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTGCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213816" ref_strand="+" ref_description="SGN-E213816 [cLEC-76-K10]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcaaccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaagtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacaaggttcatttatgaacgatgttagatggtttactgatccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50596" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="571" r_length="492" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213816" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTG</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAACCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAAGGTTCATTTATGAACGATGTTAGATGGTTTACTGATCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204586" ref_strand="+" ref_description="SGN-E204586 [cLEC-14-A11]">
      <seq>atggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52115" stop="50296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="51746" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50596" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="562" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="51746"/>
          <exon e_start="51087" e_stop="50596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTG</genome_strand>
        <mrna_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212875" ref_strand="+" ref_description="SGN-E212875 [cLEC-73-F5]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50597" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="570" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212875" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212753" ref_strand="+" ref_description="SGN-E212753 [cLEC-73-F6]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50597" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="568" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212753" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296731" ref_strand="+" ref_description="SGN-E296731 [cLEW-3-K1]">
      <seq>tgcttctaggattacttgtctccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctgtacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgtgggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaacgtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttgatttaggaacgatgttagatggtttactgatccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52087" stop="50297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51787" g_stop="51746" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50597" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="533" r_length="491" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E296731" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51787" e_stop="51746"/>
          <exon e_start="51087" e_stop="50597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATT</genome_strand>
        <mrna_strand>TGCTTCTAGGATTACTTGTCTCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTGTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTGGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAACGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTGATTTAGGAACGATGTTAGATGGTTTACTGATCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213325" ref_strand="+" ref_description="SGN-E213325 [cLEC-71-F2]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacanggttcatttangaacgatgntagatggtttactgatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50598" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="567" r_length="490" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213325" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACANGGTTCATTTANGAACGATGNTAGATGGTTTACTGATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208871" ref_strand="+" ref_description="SGN-E208871 [cLEC-51-D3]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50598" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="566" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212949" ref_strand="+" ref_description="SGN-E212949 [cLEC-72-A19]">
      <seq>atcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacaggggttcatttangaacgatgntagatggtttactgatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50599" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="570" r_length="490" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212949" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="50599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACA-GGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAA</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGGTTCATTTANGAACGATGNTAGATGGTTTACTGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207839" ref_strand="+" ref_description="SGN-E207839 [cLEC-32-J22]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttattccaccatcacagggttcatttaggaacgatgttagatggtttactgatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50599" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="556" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207839" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA-TCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAA</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATTCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201924" ref_strand="+" ref_description="SGN-E201924 [cLEC-7-E11]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50601" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="564" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203951" ref_strand="+" ref_description="SGN-E203951 [cLEC-22-M9]">
      <seq>gaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51306" stop="50301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51006" g_stop="50601" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51006" e_stop="50601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCC</genome_strand>
        <mrna_strand>GAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211751" ref_strand="+" ref_description="SGN-E211751 [cLEC-66-A12]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50602" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="568" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211751" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATC</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211946" ref_strand="+" ref_description="SGN-E211946 [cLEC-66-K4]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacanggttcatttangaacgatgttagatggtttactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50602" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="562" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211946" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATC</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACANGGTTCATTTANGAACGATGTTAGATGGTTTACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205786" ref_strand="+" ref_description="SGN-E205786 [cLEC-20-E21]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50602" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="562" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205786" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATC</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337707" ref_strand="+" ref_description="SGN-E337707 [cTOE-17-F4]">
      <seq>caaattgctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52103" stop="50302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51803" g_stop="51746" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50602" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="544" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E337707" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51803" e_stop="51746"/>
          <exon e_start="51087" e_stop="50602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATC</genome_strand>
        <mrna_strand>CAAATTGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210107" ref_strand="+" ref_description="SGN-E210107 [cLEC-40-D21]">
      <seq>ttgaacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51395" stop="50302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51095" g_stop="50602" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51095" e_stop="50602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATC</genome_strand>
        <mrna_strand>TTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206473" ref_strand="+" ref_description="SGN-E206473 [cLEC-23-K18]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="562" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206473" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207459" ref_strand="+" ref_description="SGN-E207459 [cLEC-36-I3]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="562" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207698" ref_strand="+" ref_description="SGN-E207698 [cLEC-32-P14]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgctagatggtgggtacagaagaacgtttgagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgtgactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaacgtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="561" r_length="485" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207698" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCTAGATGGTGGGTACAGAAGAACGTTTGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTGACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAACGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206804" ref_strand="+" ref_description="SGN-E206804 [cLEC-33-C1]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgacgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgctggtaatgaaatcagtcctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatccgtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="561" r_length="485" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206804" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGACGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGCTGGTAATGAAATCAGTCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCCGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207694" ref_strand="+" ref_description="SGN-E207694 [cLEC-32-N16]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaagtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="560" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231993" ref_strand="+" ref_description="SGN-E231993 [cLED-7-A24]">
      <seq>catcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52119" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51819" g_stop="51746" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="559" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E231993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51819" e_stop="51746"/>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209638" ref_strand="+" ref_description="SGN-E209638 [cLEC-54-F13]">
      <seq>ataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51094" g_stop="50603" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209638" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51094" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>ATAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207457" ref_strand="+" ref_description="SGN-E207457 [cLEC-36-G21]">
      <seq>caccaacattcacataacacaggctcaaataggtgtttgttatggaatgatggggaacagcttatcatcacgttcttgacatatacaactctactagacgagaatcattagaagactgaggctttatgatccaaatcgtggaactttgaatgcgctgagaagatcaaacattgactctatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50603" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="505" r_length="485" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207457" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAGCTTATCATCACGTTCTTGACATATACAACTCTACTAGACGAGAATCATTAGAAGACTGAGGCTTTATGATCCAAATCGTGGAACTTTGAATGCGCTGAGAAGATCAAACATTGACTCTATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266260" ref_strand="+" ref_description="SGN-E266260 [cLEI-3-F5]">
      <seq>gcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacaaggttcatttaggatcgatgttagatggtttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52123" stop="50304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50604" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="563" r_length="484" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E266260" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGA</genome_strand>
        <mrna_strand>GCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAAGGTTCATTTAGGATCGATGTTAGATGGTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267120" ref_strand="+" ref_description="SGN-E267120 [cLEI-4-B22]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagatggtttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50604" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="545" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E267120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGA</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208909" ref_strand="+" ref_description="SGN-E208909 [cLEC-51-F16]">
      <seq>atcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattttaggaaccatgttagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50613" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="556" r_length="476" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208909" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="50613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCA-TTTAGGAACGATGTTAGATG</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTTAGGAACCATGTTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209326" ref_strand="+" ref_description="SGN-E209326 [cLEC-53-H8]">
      <seq>ttgaacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51395" stop="50314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51095" g_stop="50614" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51095" e_stop="50614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGAT</genome_strand>
        <mrna_strand>TTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250536" ref_strand="+" ref_description="SGN-E250536 [cLEG-21-A13]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttangaacgatgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50615" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="550" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E250536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTANGAACGATGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209711" ref_strand="+" ref_description="SGN-E209711 [cLEC-52-I17]">
      <seq>tgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52089" stop="50315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51789" g_stop="51746" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50615" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="517" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51789" e_stop="51746"/>
          <exon e_start="51087" e_stop="50615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGA</genome_strand>
        <mrna_strand>TGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201740" ref_strand="+" ref_description="SGN-E201740 [cLEC-11-C24]">
      <seq>ttacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52076" stop="50315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51776" g_stop="51746" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50615" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="504" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51776" e_stop="51746"/>
          <exon e_start="51087" e_stop="50615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGA</genome_strand>
        <mrna_strand>TTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215145" ref_strand="+" ref_description="SGN-E215145 [cLEC-78-L2]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaagaacgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50618" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="549" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215145" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAAGAACGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306446" ref_strand="+" ref_description="SGN-E306446 [cLEX-13-E1]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50620" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="545" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E306446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATG</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202363" ref_strand="+" ref_description="SGN-E202363 [cLEC-6-B24]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50620" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="543" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATG</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201937" ref_strand="+" ref_description="SGN-E201937 [cLEC-7-I19]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatttaggaacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50620" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="533" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATG</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208905" ref_strand="+" ref_description="SGN-E208905 [cLEC-51-D16]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50629" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="536" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209529" ref_strand="+" ref_description="SGN-E209529 [cLEC-54-J9]">
      <seq>ataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51094" g_stop="50629" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209529" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51094" e_stop="50629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTA</genome_strand>
        <mrna_strand>ATAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205760" ref_strand="+" ref_description="SGN-E205760 [cLEC-21-J8]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgctggtaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50630" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="540" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205760" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTGGTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214765" ref_strand="+" ref_description="SGN-E214765 [cLEC-79-K7]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50630" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="540" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211755" ref_strand="+" ref_description="SGN-E211755 [cLEC-66-C10]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50630" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="537" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205975" ref_strand="+" ref_description="SGN-E205975 [cLEC-20-G20]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50630" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="533" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213051" ref_strand="+" ref_description="SGN-E213051 [cLEC-72-J21]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50631" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="532" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214379" ref_strand="+" ref_description="SGN-E214379 [cLEC-77-C6]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50632" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="535" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202397" ref_strand="+" ref_description="SGN-E202397 [cLEC-6-N6]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50632" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="528" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202627" ref_strand="+" ref_description="SGN-E202627 [cLEC-19-J20]">
      <seq>cataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50632" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="464" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCAT</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208857" ref_strand="+" ref_description="SGN-E208857 [cLEC-51-I2]">
      <seq>tcatcaaacattatggctacctcacaaatagctattattgtgcttctaggattacttgacgccaccaacattcacataacataggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaactgatattatgacttccaaatgtatatgtgaaacacatttcttctgggatggaacacgccagatggtgggtacagaagaacgttatagatttctggcctcatgttaaaattaagtatatagctgatggtaatgaaatcagccctgttactggcacttccagtcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggattgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcacagggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50634" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="536" r_length="454" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208857" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTC</genome_strand>
        <mrna_strand>TCATCAAACATTATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGACGCCACCAACATTCACATAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAACTGATATTATGACTTCCAAATGTATATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGTGGGTACAGAAGAACGTTATAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGATGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAGTCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGATTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208854" ref_strand="+" ref_description="SGN-E208854 [cLEC-51-E8]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaatttttatccaccatcacagggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50634" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="531" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTTTTATCCACCATCACAGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211222" ref_strand="+" ref_description="SGN-E211222 [cLEC-70-N5]">
      <seq>gctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctccacgtctgtagacatgacgctgattggcaattcttatccaccatcacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52097" stop="50338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51797" g_stop="51746" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50638" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="502" r_length="450" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51797" e_stop="51746"/>
          <exon e_start="51087" e_stop="50638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGG</genome_strand>
        <mrna_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCCACGTCTGTAGACATGACGCTGATTGGCAATTCTTATCCACCATCACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202375" ref_strand="+" ref_description="SGN-E202375 [cLEC-6-F22]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50640" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="527" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208377" ref_strand="+" ref_description="SGN-E208377 [cLEC-37-K22]">
      <seq>acaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51351" stop="50340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51051" g_stop="50640" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51051" e_stop="50640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACA</genome_strand>
        <mrna_strand>ACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207935" ref_strand="+" ref_description="SGN-E207935 [cLEC-34-F7]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50641" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="526" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCAC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301653" ref_strand="+" ref_description="SGN-E301653 [cLEW-23-I14]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggatgggttgtctccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtcttaacgtctgtagacatgacgttgattggcaattcttatccaccatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50641" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="524" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E301653" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCAC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATGGGTTGTCTCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTTAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206435" ref_strand="+" ref_description="SGN-E206435 [cLEC-23-I21]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgggtctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50642" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="525" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206435" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGGGTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203967" ref_strand="+" ref_description="SGN-E203967 [cLEC-22-E14]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50643" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="522" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212461" ref_strand="+" ref_description="SGN-E212461 [cLEC-74-P12]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50644" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="521" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209477" ref_strand="+" ref_description="SGN-E209477 [cLEC-54-M15]">
      <seq>aacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttatccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51304" stop="50344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51004" g_stop="50644" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51004" e_stop="50644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCAT</genome_strand>
        <mrna_strand>AACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201136" ref_strand="+" ref_description="SGN-E201136 [cLEC-10-M20]">
      <seq>tacctcacaaatagctattattgtgcttctaggattactcgtcgccaccaacattcacatcacacatgctcaaataggtgtttgttatggaatgatggggaacaactagccatcacattcttaagttatacatctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttattcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50645" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="508" r_length="443" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201136" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCA</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTCGTCGCCACCAACATTCACATCACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTAGCCATCACATTCTTAAGTTATACATCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211745" ref_strand="+" ref_description="SGN-E211745 [cLEC-66-O5]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagcttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50651" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="494" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTAT</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC--TTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206378" ref_strand="+" ref_description="SGN-E206378 [cLEC-23-P5]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagcttgtggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="515" r_length="436" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206378" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTTGTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202424" ref_strand="+" ref_description="SGN-E202424 [cLEC-6-I11]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="515" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209448" ref_strand="+" ref_description="SGN-E209448 [cLEC-53-L16]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="515" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202648" ref_strand="+" ref_description="SGN-E202648 [cLEC-19-D5]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattactggtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="509" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTGGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207551" ref_strand="+" ref_description="SGN-E207551 [cLEC-36-P24]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="508" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269157" ref_strand="+" ref_description="SGN-E269157 [cLEI-16-G14]">
      <seq>gctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52112" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51812" g_stop="51746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="503" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E269157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51812" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>GCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204173" ref_strand="+" ref_description="SGN-E204173 [cLEC-13-O5]">
      <seq>acaaatagctattattgtgctcctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="495" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204173" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTCCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266126" ref_strand="+" ref_description="SGN-E266126 [cLEI-6-N1]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="495" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E266126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201142" ref_strand="+" ref_description="SGN-E201142 [cLEC-10-O22]">
      <seq>atagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaatacgtgtttgttatggaatgatggggaacaacttgccatcacattctgaacttatacagctgtacaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgctctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttgcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52100" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51800" g_stop="51746" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="491" r_length="436" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201142" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51800" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATACGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAACTTATACAGCTGTACAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCTCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTGCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200344" ref_strand="+" ref_description="SGN-E200344 [cLEC-1-K15]">
      <seq>gcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52086" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51786" g_stop="51746" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="477" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51786" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>GCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203598" ref_strand="+" ref_description="SGN-E203598 [cLEC-15-A14]">
      <seq>cgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52068" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51768" g_stop="51746" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50652" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="459" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51768" e_stop="51746"/>
          <exon e_start="51087" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>CGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208528" ref_strand="+" ref_description="SGN-E208528 [cLEC-39-F11]">
      <seq>ttgccatcacattctgaagttatacagctctacaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggactttcaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgatggtaatgaaatcaggcctgttgctggcacttccaatcttgccccatttcaagttcctgctttgggtaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaagggctcaacgtctgtagacatgacgttgattggcaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51346" stop="50352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51046" g_stop="50652" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208528" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51046" e_stop="50652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</genome_strand>
        <mrna_strand>TTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTTCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGATGGTAATGAAATCAGGCCTGTTGCTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGGTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGGCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204701" ref_strand="+" ref_description="SGN-E204701 [cLEC-14-L9]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="512" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209109" ref_strand="+" ref_description="SGN-E209109 [cLEC-38-K5]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="512" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209603" ref_strand="+" ref_description="SGN-E209603 [cLEC-54-A18]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="512" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210570" ref_strand="+" ref_description="SGN-E210570 [cLEC-35-N10]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="510" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310843" ref_strand="+" ref_description="SGN-E310843 [cLEZ-15-K10]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="509" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E310843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200981" ref_strand="+" ref_description="SGN-E200981 [cLEC-5-M19]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="499" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204465" ref_strand="+" ref_description="SGN-E204465 [cLEC-24-E9]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="498" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279804" ref_strand="+" ref_description="SGN-E279804 [cLER-8-I22]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50655" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="483" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E279804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206788" ref_strand="+" ref_description="SGN-E206788 [cLEC-31-J22]">
      <seq>atgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51361" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51061" g_stop="50655" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51061" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</genome_strand>
        <mrna_strand>ATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201637" ref_strand="+" ref_description="SGN-E201637 [cLEC-11-D17]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50656" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="504" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208945" ref_strand="+" ref_description="SGN-E208945 [cLEC-38-K15]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaagtctcaacgtctgtagacatgacgttgattggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50656" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="493" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208945" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207597" ref_strand="+" ref_description="SGN-E207597 [cLEC-32-A12]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50656" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="493" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210262" ref_strand="+" ref_description="SGN-E210262 [cLEC-35-E21]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50656" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="491" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200855" ref_strand="+" ref_description="SGN-E200855 [cLEC-5-I21]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50662" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="499" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTG</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209098" ref_strand="+" ref_description="SGN-E209098 [cLEC-38-G21]">
      <seq>tggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52114" stop="50362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51814" g_stop="51746" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50662" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="495" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51814" e_stop="51746"/>
          <exon e_start="51087" e_stop="50662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTG</genome_strand>
        <mrna_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204376" ref_strand="+" ref_description="SGN-E204376 [cLEC-13-D23]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgtcaccaacattcacataacataggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtatatgtgaaacacatttattctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgctggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50663" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="504" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204376" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGTCACCAACATTCACATAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTATATGTGAAACACATTTATTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGCTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210264" ref_strand="+" ref_description="SGN-E210264 [cLEC-35-G1]">
      <seq>tcgtgccgaattcggcacgagaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaaacgtagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51802" g_stop="51746" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="77" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50663" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="502" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210264" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51802" e_stop="51746"/>
          <exon e_start="51087" e_stop="50663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATT</genome_strand>
        <mrna_strand>GAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAAACGTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207754" ref_strand="+" ref_description="SGN-E207754 [cLEC-32-G6]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50664" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="483" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGAT</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203896" ref_strand="+" ref_description="SGN-E203896 [cLEC-17-H23]">
      <seq>gcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttgcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52086" stop="50364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51786" g_stop="51746" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50664" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="465" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203896" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51786" e_stop="51746"/>
          <exon e_start="51087" e_stop="50664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGAT</genome_strand>
        <mrna_strand>GCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTGCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207102" ref_strand="+" ref_description="SGN-E207102 [cLEC-30-N16]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50665" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="500" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208848" ref_strand="+" ref_description="SGN-E208848 [cLEC-51-A4]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgattgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatacctgttggtaatgaaatcagccctgttactggcacttccaatcttgccctatttcaagttgctgctttggttaacatttacaaagcaatcggtgatactggatcgggaattgacatttaggtctcaacgtcattagacatgacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50668" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="481" r_length="420" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208848" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGATTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATACCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCTATTTCAAGTTGCTGCTTTGGTTAACATTTACAAAGCAATCGGTGATACTGGATCGGGAATTGACATTTAGGTCTCAACGTCATTAGACATGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210125" ref_strand="+" ref_description="SGN-E210125 [cLEC-40-J7]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50669" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="495" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACG</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210286" ref_strand="+" ref_description="SGN-E210286 [cLEC-35-O7]">
      <seq>tatacagctctacacgtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51326" stop="50369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51026" g_stop="50669" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51026" e_stop="50669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACG</genome_strand>
        <mrna_strand>TATACAGCTCTACACGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203779" ref_strand="+" ref_description="SGN-E203779 [cLEC-17-H13]">
      <seq>agatcaaacatcatggctacctcacaaagagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50671" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="499" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203779" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</genome_strand>
        <mrna_strand>AGATCAAACATCATGGCTACCTCACAAAGAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205294" ref_strand="+" ref_description="SGN-E205294 [cLEC-25-H10]">
      <seq>atcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50671" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="497" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="50671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209675" ref_strand="+" ref_description="SGN-E209675 [cLEC-54-J2]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtgggcaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50671" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="493" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209675" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTGGGCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204264" ref_strand="+" ref_description="SGN-E204264 [cLEC-13-F4]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50671" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="483" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341175" ref_strand="+" ref_description="SGN-E341175 [cTOE-22-L4]">
      <seq>tcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50671" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="478" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E341175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207634" ref_strand="+" ref_description="SGN-E207634 [cLEC-32-B1]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50672" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="488" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATG</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209129" ref_strand="+" ref_description="SGN-E209129 [cLEC-38-E14]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50672" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="488" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATG</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285815" ref_strand="+" ref_description="SGN-E285815 [cLES-5-J15]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgtagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50672" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="481" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E285815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATG</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207530" ref_strand="+" ref_description="SGN-E207530 [cLEC-36-J2]">
      <seq>acattatggctacctcacaaatagctattattgtgcttctaggattactagtcgccaccaacattcacataacagaggctcaaataggtgtttgctatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaaggcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgctctaagaggatcaaacattgaagtgatattcagacttccaaatgtagatgtgaaacacatttcttgtgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattcagtatatagctggtggtaatgaaatcagacctgttactggcacttccaatcttgccccatatcaagtttctgctatggttaacatttacaaagcaatcggtgaagctgggttgggaaatgacattaacgtctcaacgtctgtagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50674" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="489" r_length="414" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207530" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACA</genome_strand>
        <mrna_strand>ACATTATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTAGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGCTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGGCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCTCTAAGAGGATCAAACATTGAAGTGATATTCAGACTTCCAAATGTAGATGTGAAACACATTTCTTGTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTCAGTATATAGCTGGTGGTAATGAAATCAGACCTGTTACTGGCACTTCCAATCTTGCCCCATATCAAGTTTCTGCTATGGTTAACATTTACAAAGCAATCGGTGAAGCTGGGTTGGGAAATGACATTAACGTCTCAACGTCTGTAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214699" ref_strand="+" ref_description="SGN-E214699 [cLEC-79-J21]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50679" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="488" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211983" ref_strand="+" ref_description="SGN-E211983 [cLEC-66-H1]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50679" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="485" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204059" ref_strand="+" ref_description="SGN-E204059 [cLEC-22-O2]">
      <seq>catcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatctctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactgacacttacaatcttgccccatttcacgttcctgctatggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattactgtctcaacgtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52119" stop="50379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51819" g_stop="51746" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50679" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="483" r_length="409" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204059" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51819" e_stop="51746"/>
          <exon e_start="51087" e_stop="50679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</genome_strand>
        <mrna_strand>CATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATCTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGACACTTACAATCTTGCCCCATTTCACGTTCCTGCTATGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTACTGTCTCAACGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208952" ref_strand="+" ref_description="SGN-E208952 [cLEC-38-M19]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50679" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="482" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206162" ref_strand="+" ref_description="SGN-E206162 [cLEC-29-A5]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50680" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="490" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTG</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202543" ref_strand="+" ref_description="SGN-E202543 [cLEC-6-B16]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50680" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="484" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTG</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204032" ref_strand="+" ref_description="SGN-E204032 [cLEC-22-E8]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50682" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="485" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209351" ref_strand="+" ref_description="SGN-E209351 [cLEC-53-P22]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaggtctcaacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50682" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="485" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209556" ref_strand="+" ref_description="SGN-E209556 [cLEC-54-H16]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgccgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaaactggtttgggaaatgacattaaggtctcaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50683" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="477" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209556" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGCCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAACTGGTTTGGGAAATGACATTAAGGTCTCAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206236" ref_strand="+" ref_description="SGN-E206236 [cLEC-29-F24]">
      <seq>atcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaaagtctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50686" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="482" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="50686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAA</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAAGTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305489" ref_strand="+" ref_description="SGN-E305489 [cLEX-15-D22]">
      <seq>caaatatttattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataagtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgaaccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattacgacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaacaacgttagagaattctggcctcatgttaaaattaaagatataactgatggtaatgaaatcagccctgttactggcacttccaatcttgccccatttgaagttcctgctttggttaacatttacaaatcaatcggtgaagctggtttgggaaatgacattaatgtctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52103" stop="50386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51803" g_stop="51746" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50686" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="460" r_length="402" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E305489" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51803" e_stop="51746"/>
          <exon e_start="51087" e_stop="50686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAA</genome_strand>
        <mrna_strand>CAAATATTTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAAGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGAACCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTACGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAACAACGTTAGAGAATTCTGGCCTCATGTTAAAATTAAAGATATAACTGATGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTGAAGTTCCTGCTTTGGTTAACATTTACAAATCAATCGGTGAAGCTGGTTTGGGAAATGACATTAATGTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209361" ref_strand="+" ref_description="SGN-E209361 [cLEC-53-K11]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50694" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="473" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209637" ref_strand="+" ref_description="SGN-E209637 [cLEC-54-F11]">
      <seq>acttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctggtggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttgggtaacatttacaaagcaatcggtgaagctggtttgggaaatgacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52074" stop="50394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51774" g_stop="51746" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50694" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="423" r_length="394" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209637" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51774" e_stop="51746"/>
          <exon e_start="51087" e_stop="50694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAA</genome_strand>
        <mrna_strand>ACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGGTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGGTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304117" ref_strand="+" ref_description="SGN-E304117 [cLEX-6-J16]">
      <seq>ttacttctcatcaaacatcatggcttcctcacaaataggtattattgtgctgctaggattactggtcgccaccaacattcacataacagaggctcaaataggtctttgttatggaatgatggggaacaacttgccatcacattgttcagttatacagctcttcaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgcgctgagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgatatggtgggtacatgaacaacgttagagatttctggcctcatgttaaaattaattatatagctgatggtgatgaaatcagccctgttactggcacttccaatcttgccccatttcaagtgcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggagatgacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52134" stop="50395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51834" g_stop="51746" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50695" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="483" r_length="394" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E304117" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51834" e_stop="51746"/>
          <exon e_start="51087" e_stop="50695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACA-GAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</genome_strand>
        <mrna_strand>TTACTTCTCATCAAACATCATGGCTTCCTCACAAATAGGTATTATTGTGCTGCTAGGATTACTGGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTCTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTGTTCAGTTATACAGCTCTTCAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTGAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGATATGGTGGGTACATGAACAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAATTATATAGCTGATGGTGATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTGCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAGATGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209293" ref_strand="+" ref_description="SGN-E209293 [cLEC-53-J11]">
      <seq>aacatcatggctacctcacaaatttctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50695" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="469" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209293" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATTTCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204261" ref_strand="+" ref_description="SGN-E204261 [cLEC-13-D22]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50695" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="469" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209626" ref_strand="+" ref_description="SGN-E209626 [cLEC-54-O10]">
      <seq>atagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52100" stop="50395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51800" g_stop="51746" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50695" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="448" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51800" e_stop="51746"/>
          <exon e_start="51087" e_stop="50695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</genome_strand>
        <mrna_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267837" ref_strand="+" ref_description="SGN-E267837 [cLEI-12-O23]">
      <seq>atgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51282" stop="50395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50982" g_stop="50695" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E267837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50982" e_stop="50695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</genome_strand>
        <mrna_strand>ATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206983" ref_strand="+" ref_description="SGN-E206983 [cLEC-33-M6]">
      <seq>agatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50696" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="467" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATT</genome_strand>
        <mrna_strand>AGATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210432" ref_strand="+" ref_description="SGN-E210432 [cLEC-35-I15]">
      <seq>tcaaacatcatggctaccttacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaaaaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="470" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210432" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTTACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAAAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206836" ref_strand="+" ref_description="SGN-E206836 [cLEC-33-O21]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="470" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209314" ref_strand="+" ref_description="SGN-E209314 [cLEC-53-B22]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="470" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209314" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212000" ref_strand="+" ref_description="SGN-E212000 [cLEC-66-L21]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="470" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209413" ref_strand="+" ref_description="SGN-E209413 [cLEC-53-H9]">
      <seq>caaacatcatggctacctcacaaattgctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52123" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51823" g_stop="51746" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="469" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51823" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>CAAACATCATGGCTACCTCACAAATTGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200065" ref_strand="+" ref_description="SGN-E200065 [cLEC-8-A20]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="468" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209498" ref_strand="+" ref_description="SGN-E209498 [cLEC-54-K6]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="468" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211943" ref_strand="+" ref_description="SGN-E211943 [cLEC-66-I22]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="467" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203857" ref_strand="+" ref_description="SGN-E203857 [cLEC-17-C4]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="466" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209041" ref_strand="+" ref_description="SGN-E209041 [cLEC-38-P3]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="466" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205464" ref_strand="+" ref_description="SGN-E205464 [cLEC-28-C19]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacccgagatggtgggtacagaagaacgctagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="463" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205464" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACCCGAGATGGTGGGTACAGAAGAACGCTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335584" ref_strand="+" ref_description="SGN-E335584 [cTOE-2-P14]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="463" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E335584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201716" ref_strand="+" ref_description="SGN-E201716 [cLEC-11-G13]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgccagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="457" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201716" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209106" ref_strand="+" ref_description="SGN-E209106 [cLEC-38-I23]">
      <seq>tcacaaatagctattattgggcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggagaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52106" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51806" g_stop="51746" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="452" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209106" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51806" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>TCACAAATAGCTATTATTGGGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGAGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201199" ref_strand="+" ref_description="SGN-E201199 [cLEC-10-I23]">
      <seq>atagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52100" stop="50397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51800" g_stop="51746" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50697" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="446" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51800" e_stop="51746"/>
          <exon e_start="51087" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</genome_strand>
        <mrna_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204762" ref_strand="+" ref_description="SGN-E204762 [cLEC-14-C1]">
      <seq>atcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgatggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="470" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGATGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204458" ref_strand="+" ref_description="SGN-E204458 [cLEC-24-C9]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="469" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206608" ref_strand="+" ref_description="SGN-E206608 [cLEC-31-M18]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaaactggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="467" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206608" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAACTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205121" ref_strand="+" ref_description="SGN-E205121 [cLEC-16-C14]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="467" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205375" ref_strand="+" ref_description="SGN-E205375 [cLEC-25-N6]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattaggtgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="466" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205375" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTAGGTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209166" ref_strand="+" ref_description="SGN-E209166 [cLEC-38-H19]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="462" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203994" ref_strand="+" ref_description="SGN-E203994 [cLEC-22-C15]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="449" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335865" ref_strand="+" ref_description="SGN-E335865 [cTOE-6-B2]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="449" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E335865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205060" ref_strand="+" ref_description="SGN-E205060 [cLEC-16-H12]">
      <seq>ttgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52090" stop="50398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51790" g_stop="51746" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50698" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="435" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51790" e_stop="51746"/>
          <exon e_start="51087" e_stop="50698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</genome_strand>
        <mrna_strand>TTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205750" ref_strand="+" ref_description="SGN-E205750 [cLEC-21-F2]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgcgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggagaagctggtttgggaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50699" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="468" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205750" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGCGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGAGAAGCTGGTTTGGGAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205845" ref_strand="+" ref_description="SGN-E205845 [cLEC-20-O10]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50699" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="468" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200970" ref_strand="+" ref_description="SGN-E200970 [cLEC-5-I17]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50699" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="461" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298196" ref_strand="+" ref_description="SGN-E298196 [cLEW-9-K9]">
      <seq>cttgtaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaaatatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52085" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51785" g_stop="51746" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50699" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="429" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E298196" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51785" e_stop="51746"/>
          <exon e_start="51087" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</genome_strand>
        <mrna_strand>CTTGTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAATATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205371" ref_strand="+" ref_description="SGN-E205371 [cLEC-25-L6]">
      <seq>agaggctcaaataggtgtttgttatggaatgatggggaacaacttgccggcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51389" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51089" g_stop="50699" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205371" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51089" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</genome_strand>
        <mrna_strand>AGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCGGCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200931" ref_strand="+" ref_description="SGN-E200931 [cLEC-5-H16]">
      <seq>gatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgtttggtaacatttacaaagcaatcggtgaagctggttgggaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51208" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50908" g_stop="50699" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200931" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50908" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGAC</genome_strand>
        <mrna_strand>GATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTG-TTTGG-TAACATTTACAAAGCAATCGGTGAAGCTGG-TTGGG-AATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202508" ref_strand="+" ref_description="SGN-E202508 [cLEC-6-F21]">
      <seq>aataatattccacttcaattaatatcatacacaagtctatctcagtgtagttataaatagctcttaatccatcttagtttgtaccaaaaacattacttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctggtttgggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52226" stop="50401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51926" g_stop="51746" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50701" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="568" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E202508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51926" e_stop="51746"/>
          <exon e_start="51087" e_stop="50701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATTCCACTTCAATTAATATCATACACAAGTCTATCTCAGTGTAGTTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATG</genome_strand>
        <mrna_strand>AATAATATTCCACTTCAATTAATATCATACACAAGTCTATCTCAGTGTAGTTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209523" ref_strand="+" ref_description="SGN-E209523 [cLEC-54-H3]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtgaagctgggttgggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50702" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="465" r_length="386" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGGTTGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212266" ref_strand="+" ref_description="SGN-E212266 [cLEC-75-N9]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatggtaaaattaagtatatagctggtggtaatgaaatcagccctggtactggcacttccaatcttgccccatttcaaggtcctgctttgggtaacatttaccaagcaatccgtgaagctggtttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50704" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="450" r_length="384" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212266" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAA</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGGTAAAATTAAGTATATAGCTGGTGGTAATGAAATCAGCCCTGGTACTGGCACTTCCAATCTTGCCCCATTTCAAGGTCCTGCTTTGGGTAACATTTACCAAGCAATCCGTGAAGCTGGTTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293674" ref_strand="+" ref_description="SGN-E293674 [cLET-21-K23]">
      <seq>acaaatagctattattgttcttctttgattacttgccgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgttgatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttgggtaacatttacaaagcaatcggcgaagctggtttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50705" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="442" r_length="383" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E293674" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGA</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTTCTTCTTTGATTACTTGCCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTTGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGGTAACATTTACAAAGCAATCGGCGAAGCTGGTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206573" ref_strand="+" ref_description="SGN-E206573 [cLEC-31-K5]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50718" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="452" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E206573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGA</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201548" ref_strand="+" ref_description="SGN-E201548 [cLEC-4-H16]">
      <seq>catggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggtttacatttacaaagcaatcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52116" stop="50418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51816" g_stop="51746" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50718" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="441" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51816" e_stop="51746"/>
          <exon e_start="51087" e_stop="50718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGA</genome_strand>
        <mrna_strand>CATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTTACATTTACAAAGCAATCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201051" ref_strand="+" ref_description="SGN-E201051 [cLEC-5-N8]">
      <seq>cgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggtaacatttacaaagcaatcgggaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51174" stop="50412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50874" g_stop="50721" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201051" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50874" e_stop="50721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGG</genome_strand>
        <mrna_strand>CGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGG-TAACATTTACAAAGCAATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209682" ref_strand="+" ref_description="SGN-E209682 [cLEC-54-L4]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaantgatattangacttccaaatgtaaatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaaccgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50722" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="443" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209682" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAA-CGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCG</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAANTGATATTANGACTTCCAAATGTAAATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACCGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205368" ref_strand="+" ref_description="SGN-E205368 [cLEC-25-J8]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacgttcacataacagaggctcaaataggtgtttgttatggaatgatggggaacatctctccatcacatattgaagttatacagctctacaggtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaagacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgctagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50723" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="415" r_length="365" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205368" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATC</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACGTTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACATCTCTCCATCACATATTGAAGTTATACAGCTCTACAGGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAAGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGCTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215143" ref_strand="+" ref_description="SGN-E215143 [cLEC-78-J22]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50724" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="443" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E215143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205657" ref_strand="+" ref_description="SGN-E205657 [cLEC-21-N12]">
      <seq>ggctcaaataggtgtttgttatggaatgatggggaacaactggccatcacattctgaagttatacacctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctggtggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacatttacaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51386" stop="50425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51086" g_stop="50725" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205657" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51086" e_stop="50725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAA</genome_strand>
        <mrna_strand>GGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTGGCCATCACATTCTGAAGTTATACACCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGGTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205534" ref_strand="+" ref_description="SGN-E205534 [cLEC-28-H14]">
      <seq>tccatcttagtttgtaccaaaagcattacttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaacgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccattnnnagttcctgctttggttaacatttacaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52159" stop="50426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51859" g_stop="51746" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50726" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="476" r_length="362" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205534" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51859" e_stop="51746"/>
          <exon e_start="51087" e_stop="50726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCA</genome_strand>
        <mrna_strand>TCCATCTTAGTTTGTACCAAAAGCATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAACGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTNNNAGTTCCTGCTTTGGTTAACATTTACAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209249" ref_strand="+" ref_description="SGN-E209249 [cLEC-53-C10]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgacgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagctatacagctctacaagtcgagaaacattaaaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtatatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggcaatgaaatcagccctgctactggcacttacaatcttgccccatttcaagttcctgctttggttaacatttacaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50726" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="428" r_length="362" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209249" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCA</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGACGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGCTATACAGCTCTACAAGTCGAGAAACATTAAAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTATATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGCAATGAAATCAGCCCTGCTACTGGCACTTACAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208241" ref_strand="+" ref_description="SGN-E208241 [cLEC-37-F19]">
      <seq>tcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacatttacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50729" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="370" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208241" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAA</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209067" ref_strand="+" ref_description="SGN-E209067 [cLEC-38-J16]">
      <seq>acttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctgtggttaacatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52132" stop="50432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51832" g_stop="51746" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50732" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="443" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51832" e_stop="51746"/>
          <exon e_start="51087" e_stop="50732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</genome_strand>
        <mrna_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTGTGGTTAACATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207201" ref_strand="+" ref_description="SGN-E207201 [cLEC-30-F15]">
      <seq>acttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52132" stop="50432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51832" g_stop="51746" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50732" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="443" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51832" e_stop="51746"/>
          <exon e_start="51087" e_stop="50732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</genome_strand>
        <mrna_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337911" ref_strand="+" ref_description="SGN-E337911 [cTOE-14-B18]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttttctggggatggaacacgccgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50732" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="436" r_length="357" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E337911" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCT-GGGATGGAACACG-CGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTT-TTCTGGGGATGGAACACGCCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208583" ref_strand="+" ref_description="SGN-E208583 [cLEC-39-L2]">
      <seq>tagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52099" stop="50432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51799" g_stop="51746" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50732" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="410" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51799" e_stop="51746"/>
          <exon e_start="51087" e_stop="50732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</genome_strand>
        <mrna_strand>TAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214590" ref_strand="+" ref_description="SGN-E214590 [cLEC-79-P4]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgtttaaattaagtatatagctgttggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50733" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="434" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214590" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTTAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201236" ref_strand="+" ref_description="SGN-E201236 [cLEC-10-G16]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctttggttaacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50733" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="432" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208776" ref_strand="+" ref_description="SGN-E208776 [cLEC-51-H11]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgctggtaatgaaatcagccctgttactggcactttcaatcttgccccatttcaagttcctgctttggttaacaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50733" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="432" r_length="356" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208776" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAAC-ATTTA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGCTGGTAATGAAATCAGCCCTGTTACTGGCACTTTCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212679" ref_strand="+" ref_description="SGN-E212679 [cLEC-73-C14]">
      <seq>atggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactgggacttccaatctttgcccatttcaagttcctgctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52115" stop="50443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="51746" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50742" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="416" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212679" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="51746"/>
          <exon e_start="51087" e_stop="50742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGT</genome_strand>
        <mrna_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGGACTTCCAATCTTTGCCCATTTCAAGTTCCTGCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213043" ref_strand="+" ref_description="SGN-E213043 [cLEC-72-H5]">
      <seq>ggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagatcctgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52113" stop="50444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51813" g_stop="51746" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50744" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="412" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213043" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51813" e_stop="51746"/>
          <exon e_start="51087" e_stop="50744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTG</genome_strand>
        <mrna_strand>GGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGATCCTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212923" ref_strand="+" ref_description="SGN-E212923 [cLEC-73-H10]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50745" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="420" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211721" ref_strand="+" ref_description="SGN-E211721 [cLEC-66-G7]">
      <seq>cggctcttaatttcattacactaattaagacttagttataaatagctcttaatccatcttagtttgtaccaataacattacttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacaggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagttcctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52183" stop="50446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51876" g_stop="51746" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="166" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51076" i_length="670">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51075" g_stop="50746" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="496" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211721" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51876" e_stop="51746"/>
          <exon e_start="51075" e_stop="50746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTT</genome_strand>
        <mrna_strand>TTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAATAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209153" ref_strand="+" ref_description="SGN-E209153 [cLEC-38-B19]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaaatatatagcttgttggtaatgaaatcagcccttgtactggcacttccaatcttgccccatttcaagttcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50747" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="421" r_length="342" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209153" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC-TGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAATATATAGCTTGTTGGTAATGAAATCAGCCCTTGTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208699" ref_strand="+" ref_description="SGN-E208699 [cLEC-39-B16]">
      <seq>ggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgccagatggtgggtacagaagaacgtttgagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgcccccatttcaagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52113" stop="50451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51813" g_stop="51746" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50751" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="406" r_length="338" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208699" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51813" e_stop="51746"/>
          <exon e_start="51087" e_stop="50751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTG-CCCCATTTCAAGTTCC</genome_strand>
        <mrna_strand>GGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGTGGGTACAGAAGAACGTTTGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCCATTTCAAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200711" ref_strand="+" ref_description="SGN-E200711 [cLEC-9-A5]">
      <seq>cgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52068" stop="50453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51768" g_stop="51746" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50753" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="358" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51768" e_stop="51746"/>
          <exon e_start="51087" e_stop="50753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTT</genome_strand>
        <mrna_strand>CGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303519" ref_strand="+" ref_description="SGN-E303519 [cLEX-2-L15]">
      <seq>cacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52105" stop="50458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51805" g_stop="51746" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50758" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="390" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E303519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51805" e_stop="51746"/>
          <exon e_start="51087" e_stop="50758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTC</genome_strand>
        <mrna_strand>CACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338364" ref_strand="+" ref_description="SGN-E338364 [cTOE-13-N10]">
      <seq>tattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52095" stop="50458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51795" g_stop="51746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50758" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="380" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E338364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51795" e_stop="51746"/>
          <exon e_start="51087" e_stop="50758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTC</genome_strand>
        <mrna_strand>TATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213048" ref_strand="+" ref_description="SGN-E213048 [cLEC-72-J5]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaagacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgccagatggtgggtacagaagaacgttaaaaaattctggcctcatggtaaaattaagtatataactggtggtaatgaaatcaaccctggtactggcacttccaatcttgccccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50759" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="406" r_length="329" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213048" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAAGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGTGGGTACAGAAGAACGTTAAAAAATTCTGGCCTCATGGTAAAATTAAGTATATAACTGGTGGTAATGAAATCAACCCTGGTACTGGCACTTCCAATCTTGCCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210139" ref_strand="+" ref_description="SGN-E210139 [cLEC-40-P1]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50759" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="395" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTT</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200892" ref_strand="+" ref_description="SGN-E200892 [cLEC-5-G20]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50760" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="407" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201969" ref_strand="+" ref_description="SGN-E201969 [cLEC-7-E8]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatcttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50764" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="401" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209311" ref_strand="+" ref_description="SGN-E209311 [cLEC-53-B4]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattaaaagactgatgctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctgtcctcatgtgaaaattaagtatatagctgctgttaatgaaatcaaccctgttactggcacttacaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50768" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="399" r_length="320" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209311" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAAAAGACTGATGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGTCCTCATGTGAAAATTAAGTATATAGCTGCTGTTAATGAAATCAACCCTGTTACTGGCACTTACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201282" ref_strand="+" ref_description="SGN-E201282 [cLEC-10-L17]">
      <seq>gctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcacttccaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52097" stop="50469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51797" g_stop="51746" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50769" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="371" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51797" e_stop="51746"/>
          <exon e_start="51087" e_stop="50769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCT</genome_strand>
        <mrna_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208598" ref_strand="+" ref_description="SGN-E208598 [cLEC-39-P24]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtctccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatatctgttggtaatgaaatcagccctgttactggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50777" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="390" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208598" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCTCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATATCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200268" ref_strand="+" ref_description="SGN-E200268 [cLEC-12-M9]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50778" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="389" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207076" ref_strand="+" ref_description="SGN-E207076 [cLEC-30-H7]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50778" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="387" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208588" ref_strand="+" ref_description="SGN-E208588 [cLEC-39-N2]">
      <seq>tagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaacaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52099" stop="50478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51799" g_stop="51746" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50778" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="364" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208588" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51799" e_stop="51746"/>
          <exon e_start="51087" e_stop="50778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</genome_strand>
        <mrna_strand>TAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAACAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207177" ref_strand="+" ref_description="SGN-E207177 [cLEC-30-K10]">
      <seq>ttacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52076" stop="50478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51776" g_stop="51746" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50778" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="341" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51776" e_stop="51746"/>
          <exon e_start="51087" e_stop="50778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</genome_strand>
        <mrna_strand>TTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207296" ref_strand="+" ref_description="SGN-E207296 [cLEC-30-O20]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacaaaagctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50779" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="386" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207296" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334831" ref_strand="+" ref_description="SGN-E334831 [cTOE-3-O9]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50779" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="386" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E334831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203946" ref_strand="+" ref_description="SGN-E203946 [cLEC-22-I23]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttataagattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttttggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattaaaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgccagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtcatgaaatcagccctgttactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50779" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="385" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203946" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTATAAGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTTTGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAAAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTCATGAAATCAGCCCTGTTACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207452" ref_strand="+" ref_description="SGN-E207452 [cLEC-36-E23]">
      <seq>tacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50779" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="374" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264928" ref_strand="+" ref_description="SGN-E264928 [cLEI-10-B3]">
      <seq>cctaactagctatatgttcttccttttttttttcaagtcaaagttatacatcatcaaattcatcttcttttttccacaaaaataaataaataaaataatcaagttgatcaagtcacctggcggctcttaacaaattctaataatattccacttcaattaatatcatacacaagtctatctcagtgtagttataaatagctcttaatccatcttagtttgtaccaaaaacattacttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagcttgtggtaatgaaatcagccctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52364" stop="50482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52064" g_stop="51746" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50782" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="625" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E264928" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52064" e_stop="51746"/>
          <exon e_start="51087" e_stop="50782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACTAGCTATATGTTCTTCCTTTTTTTTTTCAAGTCAAAGTTATACATCATCAAATTCATCTTCTTTTTTCCACAAAAATAAATAAATAAAATAATCAAGTTGATCAAGTCACCTGGCGGCTCTTAACAAATTCTAATAATATTCCACTTCAATTAATATCATACACAAGTCTATCTCAGTGTAGTTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTG</genome_strand>
        <mrna_strand>CCTAACTAGCTATATGTTCTTCCTTTTTTTTTTCAAGTCAAAGTTATACATCATCAAATTCATCTTCTTTTTTCCACAAAAATAAATAAATAAAATAATCAAGTTGATCAAGTCACCTGGCGGCTCTTAACAAATTCTAATAATATTCCACTTCAATTAATATCATACACAAGTCTATCTCAGTGTAGTTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTTGTGGTAATGAAATCAGCCCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204669" ref_strand="+" ref_description="SGN-E204669 [cLEC-14-B23]">
      <seq>catggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaagctcaaataggtgtttgctatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctcagaggatcaaacattgaagtgatattatgacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgccagatggtgggtacagaaaaacattataaatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52116" stop="50483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51816" g_stop="51746" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50783" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="376" r_length="305" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204669" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51816" e_stop="51746"/>
          <exon e_start="51087" e_stop="50783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACT</genome_strand>
        <mrna_strand>CATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCAAATAGGTGTTTGCTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTCAGAGGATCAAACATTGAAGTGATATTATGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCCAGATGGTGGGTACAGAAAAACATTATAAATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210441" ref_strand="+" ref_description="SGN-E210441 [cLEC-35-M19]">
      <seq>acaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52104" stop="50483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51804" g_stop="51746" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50783" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="364" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E210441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51804" e_stop="51746"/>
          <exon e_start="51087" e_stop="50783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACT</genome_strand>
        <mrna_strand>ACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209210" ref_strand="+" ref_description="SGN-E209210 [cLEC-38-N4]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccctgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50784" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="383" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTAC</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207704" ref_strand="+" ref_description="SGN-E207704 [cLEC-32-A19]">
      <seq>aacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52121" stop="50490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="51746" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50790" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="374" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="51746"/>
          <exon e_start="51087" e_stop="50790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCC</genome_strand>
        <mrna_strand>AACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201261" ref_strand="+" ref_description="SGN-E201261 [cLEC-10-B17]">
      <seq>caaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52123" stop="50491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51823" g_stop="51746" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50791" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="375" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51823" e_stop="51746"/>
          <exon e_start="51087" e_stop="50791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCC</genome_strand>
        <mrna_strand>CAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200683" ref_strand="+" ref_description="SGN-E200683 [cLEC-9-H21]">
      <seq>atggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52115" stop="50495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="51746" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50795" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="363" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="51746"/>
          <exon e_start="51087" e_stop="50795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATC</genome_strand>
        <mrna_strand>ATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201163" ref_strand="+" ref_description="SGN-E201163 [cLEC-10-L23]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50796" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="371" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200668" ref_strand="+" ref_description="SGN-E200668 [cLEC-9-D5]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgttggtaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50798" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="372" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAA</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211742" ref_strand="+" ref_description="SGN-E211742 [cLEC-66-M21]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50808" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="359" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E211742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201603" ref_strand="+" ref_description="SGN-E201603 [cLEC-11-A16]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50810" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="355" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200069" ref_strand="+" ref_description="SGN-E200069 [cLEC-8-C4]">
      <seq>caccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52065" stop="50510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51765" g_stop="51746" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50810" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="298" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51765" e_stop="51746"/>
          <exon e_start="51087" e_stop="50810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCT</genome_strand>
        <mrna_strand>CACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209066" ref_strand="+" ref_description="SGN-E209066 [cLEC-38-J14]">
      <seq>acttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52132" stop="50511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51832" g_stop="51746" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50811" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="364" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51832" e_stop="51746"/>
          <exon e_start="51087" e_stop="50811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC</genome_strand>
        <mrna_strand>ACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205632" ref_strand="+" ref_description="SGN-E205632 [cLEC-21-P5]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50811" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="354" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208944" ref_strand="+" ref_description="SGN-E208944 [cLEC-38-K13]">
      <seq>tccatcttagtttgtaccaaaaacattacttctcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaaattaagtatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52159" stop="50512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51859" g_stop="51746" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50812" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="390" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51859" e_stop="51746"/>
          <exon e_start="51087" e_stop="50812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAG</genome_strand>
        <mrna_strand>TCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208239" ref_strand="+" ref_description="SGN-E208239 [cLEC-37-F15]">
      <seq>tcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51392" stop="50525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50825" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="274" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAA</genome_strand>
        <mrna_strand>AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200765" ref_strand="+" ref_description="SGN-E200765 [cLEC-9-E16]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttctggcctcatgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50826" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="339" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203713" ref_strand="+" ref_description="SGN-E203713 [cLEC-17-C3]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacagaagaacgttagagatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50840" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="323" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E203713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTC</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208849" ref_strand="+" ref_description="SGN-E208849 [cLEC-51-C2]">
      <seq>acaatatgtctacctaacaaatagctattattgagcttgtaggattacttgtcgccaccaacattcacataacaaaggctcaaataagtgtttgatatggaatgatggggaacaacttgccatcacattctgaatttatacagctctgcacttcgagatacattagaagactgaggctttatgatccacatcatggatctttaaatgcgctaagaggatcaaacattgacgtgatattaggactatcaaacgtaaatgagaaacacattgcttctgagatggaacacacgagatggtgggtacagaagaacgctctagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50843" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="320" r_length="245" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208849" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGAT</genome_strand>
        <mrna_strand>ACAATATGTCTACCTAACAAATAGCTATTATTGAGCTTGTAGGATTACTTGTCGCCACCAACATTCACATAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAAGTGTTTGATATGGAATGATGGGGAACAACTTGCCATCACATTCTGAATTTATACAGCTCTGCACTTCGAGATACATTAGAAGACTGAGGCTTTATGATCCACATCATGGATCTTTAAATGCGCTAAGAGGATCAAACATTGACGTGATATTAGGACTATCAAACGTAAATGAGAAACACATTGCTTCTGAGATGGAACACACGAGATGGTGGGTACAGAAGAACGCTCTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213239" ref_strand="+" ref_description="SGN-E213239 [cLEC-72-H22]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagatggtgggtacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50857" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="308" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E213239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201279" ref_strand="+" ref_description="SGN-E201279 [cLEC-10-L11]">
      <seq>tacctcacaaatagctattattgtgcgtctaggattacttggcgccaccaacattcacataacagaggctcacataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagcttttaatgcgctaagaggatcaaacattgaaatgatattaggacttccaaatgtatatgtgaaacacatttcttttgggatggaacacacaagatggtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52110" stop="50563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51810" g_stop="51746" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50863" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="290" r_length="225" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201279" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51810" e_stop="51746"/>
          <exon e_start="51087" e_stop="50863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGG</genome_strand>
        <mrna_strand>TACCTCACAAATAGCTATTATTGTGCGTCTAGGATTACTTGGCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCACATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTTAATGCGCTAAGAGGATCAAACATTGAAATGATATTAGGACTTCCAAATGTATATGTGAAACACATTTCTTTTGGGATGGAACACACAAGATGGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201023" ref_strand="+" ref_description="SGN-E201023 [cLEC-5-D24]">
      <seq>tcatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaacacgcgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52127" stop="50569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51827" g_stop="51746" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="301" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51827" e_stop="51746"/>
          <exon e_start="51087" e_stop="50869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGAT</genome_strand>
        <mrna_strand>TCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209315" ref_strand="+" ref_description="SGN-E209315 [cLEC-53-D2]">
      <seq>ctacctcacatttagctattattgcgcttctaggagtacttgtcgccaccaacattcacatcacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctatacaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgcgaaacacatttcttctgggatggaacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50875" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="279" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E209315" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACG</genome_strand>
        <mrna_strand>CTACCTCACATTTAGCTATTATTGCGCTTCTAGGAGTACTTGTCGCCACCAACATTCACATCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTATACAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGCGAAACACATTTCTTCTGGGATGGAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201405" ref_strand="+" ref_description="SGN-E201405 [cLEC-4-B2]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgggaaacattaaaagactgaggctttatgatccaaatcatggagctttgaatgcgctcagaggatcaaacattgaagtgatattaagacttcccaatgtagatgtgaaacacatttcttctgggatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50877" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="290" r_length="211" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201405" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGGGAAACATTAAAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTCAGAGGATCAAACATTGAAGTGATATTAAGACTTCCCAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204747" ref_strand="+" ref_description="SGN-E204747 [cLEC-14-N10]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50877" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="290" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205025" ref_strand="+" ref_description="SGN-E205025 [cLEC-16-J5]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50877" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="288" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207277" ref_strand="+" ref_description="SGN-E207277 [cLEC-30-C4]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51746" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50877" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="286" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51746"/>
          <exon e_start="51087" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207183" ref_strand="+" ref_description="SGN-E207183 [cLEC-30-M12]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50877" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="283" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208149" ref_strand="+" ref_description="SGN-E208149 [cLEC-37-A3]">
      <seq>caacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggatggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="51350" stop="50577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51050" g_stop="50877" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51050" e_stop="50877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</genome_strand>
        <mrna_strand>CAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204199" ref_strand="+" ref_description="SGN-E204199 [cLEC-13-I8]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttncaaatgtagatgtgaaacacatttnttctgggatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50879" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="288" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204199" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTNCAAATGTAGATGTGAAACACATTTNTTCTGGGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200932" ref_strand="+" ref_description="SGN-E200932 [cLEC-5-J10]">
      <seq>tggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttcttctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52114" stop="50583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51814" g_stop="51746" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50883" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="274" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51814" e_stop="51746"/>
          <exon e_start="51087" e_stop="50883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGAT</genome_strand>
        <mrna_strand>TGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205628" ref_strand="+" ref_description="SGN-E205628 [cLEC-21-N9]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50891" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="276" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201189" ref_strand="+" ref_description="SGN-E201189 [cLEC-10-G3]">
      <seq>tcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggactttcaaatgtagatgtgaaacacatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52117" stop="50591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="51746" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50891" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="269" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201189" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="51746"/>
          <exon e_start="51087" e_stop="50891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCT</genome_strand>
        <mrna_strand>TCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTTCAAATGTAGATGTGAAACACATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205446" ref_strand="+" ref_description="SGN-E205446 [cLEC-28-F24]">
      <seq>gctattattgtgcttctaggatggcttgtcttcaccaacattaacataacaaaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacatctctacaagtcgagaaacattagaagactgacgctttatgatccaaatcatggagctcccaatgctctaagaggatcatacattgacgtgatattaggacttccaaatgtacatgtgaaacacatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52097" stop="50591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51797" g_stop="51746" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50891" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="249" r_length="197" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205446" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51797" e_stop="51746"/>
          <exon e_start="51087" e_stop="50891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCT</genome_strand>
        <mrna_strand>GCTATTATTGTGCTTCTAGGATGGCTTGTCTTCACCAACATTAACATAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACATCTCTACAAGTCGAGAAACATTAGAAGACTGACGCTTTATGATCCAAATCATGGAGCTCCCAATGCTCTAAGAGGATCATACATTGACGTGATATTAGGACTTCCAAATGTACATGTGAAACACATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207271" ref_strand="+" ref_description="SGN-E207271 [cLEC-30-K11]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttataagattacttgtcgccaccaacattcacataacagaggctgaaattggtgtttgttatggaacgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagcgatattacgacttacaaatgttgatgtgaaacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50894" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="273" r_length="194" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207271" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTATAAGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGAAATTGGTGTTTGTTATGGAACGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGCGATATTACGACTTACAAATGTTGATGTGAAACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200834" ref_strand="+" ref_description="SGN-E200834 [cLEC-5-C9]">
      <seq>ttacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttccaaatgtagatgtgaaacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52076" stop="50594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51776" g_stop="51746" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50894" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="225" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E200834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51776" e_stop="51746"/>
          <exon e_start="51087" e_stop="50894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATT</genome_strand>
        <mrna_strand>TTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207508" ref_strand="+" ref_description="SGN-E207508 [cLEC-36-M18]">
      <seq>atcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggactttcaaatgtagatgtgaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52118" stop="50596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51818" g_stop="51746" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50896" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="265" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E207508" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51818" e_stop="51746"/>
          <exon e_start="51087" e_stop="50896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACA</genome_strand>
        <mrna_strand>ATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTTCAAATGTAGATGTGAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214517" ref_strand="+" ref_description="SGN-E214517 [cLEC-79-E21]">
      <seq>cctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgatattaggacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52108" stop="50617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51808" g_stop="51746" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50917" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="234" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E214517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51808" e_stop="51746"/>
          <exon e_start="51087" e_stop="50917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTC</genome_strand>
        <mrna_strand>CCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212782" ref_strand="+" ref_description="SGN-E212782 [cLEC-73-P6]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaagatcaaacattgaagtgatattaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50919" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="248" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E212782" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAAGATCAAACATTGAAGTGATATTAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201032" ref_strand="+" ref_description="SGN-E201032 [cLEC-5-H6]">
      <seq>ctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattataagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52111" stop="50627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51811" g_stop="51746" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="227" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201032" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51811" e_stop="51746"/>
          <exon e_start="51087" e_stop="50927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATA</genome_strand>
        <mrna_strand>CTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTATAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204342" ref_strand="+" ref_description="SGN-E204342 [cLEC-13-C18]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaatgcgctaagaggatcaaacattgaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50929" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="236" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGA</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204345" ref_strand="+" ref_description="SGN-E204345 [cLEC-13-E14]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaaggcgagaaacattagaagactgaggctttatgatccaaatcatggagctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50958" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="209" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204345" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="50958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAA</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGGCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201203" ref_strand="+" ref_description="SGN-E201203 [cLEC-10-K7]">
      <seq>atagctattattgtgcttctaggattacttgtggccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacattacaagactgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52100" stop="50687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51800" g_stop="51746" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50987" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="156" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201203" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51800" e_stop="51746"/>
          <exon e_start="51087" e_stop="50987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGG</genome_strand>
        <mrna_strand>ATAGCTATTATTGTGCTTCTAGGATTACTTGTGGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTACAAGACTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201301" ref_strand="+" ref_description="SGN-E201301 [cLEC-4-E5]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="50999" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="166" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E201301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="50999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATT</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208467" ref_strand="+" ref_description="SGN-E208467 [cLEC-39-A3]">
      <seq>gaattccgcacgagatcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52125" stop="50700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51825" g_stop="51746" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="94" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="51000" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="182" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E208467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51825" e_stop="51746"/>
          <exon e_start="51087" e_stop="51000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACAT</genome_strand>
        <mrna_strand>ATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205117" ref_strand="+" ref_description="SGN-E205117 [cLEC-16-A14]">
      <seq>tcaaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagttatacagctctacaagtcgagaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52124" stop="50700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51824" g_stop="51746" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="51000" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="167" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E205117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51824" e_stop="51746"/>
          <exon e_start="51087" e_stop="51000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACAT</genome_strand>
        <mrna_strand>TCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204918" ref_strand="+" ref_description="SGN-E204918 [cLEC-14-P6]">
      <seq>aaacatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacagaggctcaaataggtgtttgttatggaatgatggggaacaacttgccatcacattctgaagatatacagctctacaagtcgagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52122" stop="50702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51822" g_stop="51746" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51087" g_stop="51002" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="163" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204918" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51822" e_stop="51746"/>
          <exon e_start="51087" e_stop="51002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAAC</genome_strand>
        <mrna_strand>AAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGATATACAGCTCTACAAGTCGAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378910" ref_strand="+" ref_description="SGN-E378910 [TUS-1-J14]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacaggtttctacttaaacattttgaattttcgacatcaaaaataatattattgatagtttttttttaccgtatactcttaattgtgtatcttttcccacactaacttgcatgactatattcattttacccaaagttacttgacatttttcggttttagcactcacaaacttttttaatttgagggtggtcagcagaggtgaatccaaaatttaaatcgaagtcaaaatctaatatttatatattttcttcgtttcaaaaataatgtcttttttttttagtttgtttaaaaaaaaggacccctttctttatttgacaacaatttaactttaactttccacattacatgtttaagaacacaagattaaagaaaattttggtatatttgacataagtttaattttggaccacaagattaaaaaatctattttcttttttcttaaattccgttccaaattaaactaggctaatctttttaaaacggatggagtacttatttagtgaacttttttttgagacgtaaacaattttgagctnaagctattagattcggaggaaccagtaattaattacatctgccctagcatgtgtttctttaaatttttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51142" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E378910" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTNAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375798" ref_strand="+" ref_description="SGN-E375798 [TUS-15-G8]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacaggtttctacttaaacattttgaattttcgacatcaaaaataatattattgatagtttttttttaccgtatactcttaattgtgtatcttttcccacactaacttgcatgactatattcattttacccaaagttacttgacatttttcggttttagcactcacaaacttttttaatttgagggtggtcagcagaggtgaatccaaaatttaaatcgaagtcaaaatctaatatttatatattttcttcgtttcaaaaataatgtcttttttttttagtttgtttaaaaaaaaggacccctttctttatttgacaacaatttaactttaactttccacattacatgtttaagaacacaagattaaagaaaattttggtatatttgacataagtttaattttggaccacaagattaaaaaatctattttcttttttcttatattccgttccaaattaaactatgctaatctttttaaaacggatggagtacttatttagtgaacttttttttgagacgtaaacaatttttgagctaaagctattagattcggaggaaccagtaattaattacatctgccctagcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="50862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51162" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E375798" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAA-TTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTG</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTATATTCCGTTCCAAATTAAACTATGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204440" ref_strand="+" ref_description="SGN-E204440 [cLEC-13-L18]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacaggtttctacttaaacattttgaattttcgacatcaaaaataatattattgatagtttttttttaccgtatactcttaattgtgtatcttttcccacactaacttgcatgactatattcattttacccaaagttacttgacatttttcggttttagcactcacaaacttttttaatttgagggtggtcagcagaggtgaatccaaaatttaaatcgaagtcaaaatctaatatttatatattttcttcgtttcaaaaataatgtcttttttttttagtttgtttaaaaaaaaggacccctttctttatttgacaacaatttaactttaactttccacattacatgtttaagaacacaagattaaagaaaattttggtatatttgacataagtttaattttggaccacaagattaaaaaatctattttcttttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="52120" stop="51011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51820" g_stop="51311" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E204440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51820" e_stop="51311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTT</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369257" ref_strand="+" ref_description="SGN-E369257 [TUS-25-G20]">
      <seq>gaaacactctggtttactatgcagttttagttctgaatctcatgtcctattgacagtggaagtatttgaaatggcacaagcacaaatacttgaccacacgtcgaagaaagaggatgatccttccattgcttctcaaccccttaattgacatagtgatctgtctcttgaagtttcatatgatttgcagctcgctcttctacttcaagcttctgctgaaatgttttccaagagacactatgaacgtgcaacggagttactaagcttgtgtaatctgtctgcttctccaacaggtactccggatcaaagagtagtttactgctatagtgaagctctgcgagagagaatcaataaggagacaaaatcgataacaggattacaactagatagacttgtagattttgaagtgaaaaccaattggcgttgaagagatttccttgtgtacaaagcctcatgtaattgcatgttatcacgcacttcctttttaccaagtcgctcaatttgcttgtattgaagccattttgaataattttaagtcagaaagacgacttcatttgattggttttggaatcagaagtggagctcattggataatccttatgcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="61976" stop="63179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62276" g_stop="62879" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E369257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62276" e_stop="62879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACTCTGGTTTACTATGCAGTTTTAGTTCTGAATCTCATGTCCTATTGACAGTGGAAGTATTTGAAATGGCACAAGCACAAATACTTGACCACACGTCGAAGAAAGAGGATGATCCTTCCATTGCTTCTCAACCCCTTAATTGACATAGTGATCTGTCTCTTGAAGTTTCATATGATTTGCAGCTCGCTCTTCTACTTCAAGCTTCTGCTGAAATGTTTTCCAAGAGACACTATGAACGTGCAACGGAGTTACTAAGCTTGTGTAATCTGTCTGCTTCTCCAACAGGTACTCCGGATCAAAGAGTAGTTTACTGCTATAGTGAAGCTCTGCGAGAGAGAATCAATAAGGAGACAAAATCGATAACAGGATTACAACTAGATAGACTTGTAGATTTTGAAGTGAAAACCAATTGGCGTTGAAGAGATTTCCTTGTGTACAAAGCCTCATGTAATTGCATGTTATCACGCACTTCCTTTTTACCAAGTCGCTCAATTTGCTTGTATTGAAGCCATTTTGAATAATTTTAAGTCAGAAAGACGACTTCATTTGATTGGTTTTGGAATCAGAAGTGGAGCTCATTGGATAATCCTTATGCAAGC</genome_strand>
        <mrna_strand>GAAACACTCTGGTTTACTATGCAGTTTTAGTTCTGAATCTCATGTCCTATTGACAGTGGAAGTATTTGAAATGGCACAAGCACAAATACTTGACCACACGTCGAAGAAAGAGGATGATCCTTCCATTGCTTCTCAACCCCTTAATTGACATAGTGATCTGTCTCTTGAAGTTTCATATGATTTGCAGCTCGCTCTTCTACTTCAAGCTTCTGCTGAAATGTTTTCCAAGAGACACTATGAACGTGCAACGGAGTTACTAAGCTTGTGTAATCTGTCTGCTTCTCCAACAGGTACTCCGGATCAAAGAGTAGTTTACTGCTATAGTGAAGCTCTGCGAGAGAGAATCAATAAGGAGACAAAATCGATAACAGGATTACAACTAGATAGACTTGTAGATTTTGAAGTGAAAACCAATTGGCGTTGAAGAGATTTCCTTGTGTACAAAGCCTCATGTAATTGCATGTTATCACGCACTTCCTTTTTACCAAGTCGCTCAATTTGCTTGTATTGAAGCCATTTTGAATAATTTTAAGTCAGAAAGACGACTTCATTTGATTGGTTTTGGAATCAGAAGTGGAGCTCATTGGATAATCCTTATGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248875" ref_strand="+" ref_description="SGN-E248875 [cLEF-49-G10]">
      <seq>gaaacactctggtttactatgccagttttagttctgaatctcatgtcctattgaccagtggaagtatttgaaatggcaccaagcacaaataccttgaccacacgtcgaagaaagaggatgatccttccattgcttctcaaccccttaattgacatagtgatctgtctcttgaagtttcatatgatttgcagctcgctcttctacttcaagcttctgctgaaatgttttccaagagacactatgaacgtgcaacggagttactaagcttgtgtaatctgtctgcttctccaacaggtactccggatcaaagagtagtttactgctatagtgaagctctgcgagagagaatcaataaggagacaaaatcgataacaggattacaactagatagacttgtagattttgaagtgaaaaccaattggcgttgaagagatttccttgtgtacaaagcctcatgtaattgcatgttatcacgcccttcctttttaccaagtcgctcaatttgcttgtattgaagccattttgaataattttaagtcagaaagacgacttcatttgattggttttggaatcagaagtggagctcattggataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="61976" stop="63167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62276" g_stop="62867" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E248875" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62276" e_stop="62867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACTCTGGTTTACTATG-CAGTTTTAGTTCTGAATCTCATGTCCTATTGA-CAGTGGAAGTATTTGAAATGGCA-CAAGCACAAATA-CTTGACCACACGTCGAAGAAAGAGGATGATCCTTCCATTGCTTCTCAACCCCTTAATTGACATAGTGATCTGTCTCTTGAAGTTTCATATGATTTGCAGCTCGCTCTTCTACTTCAAGCTTCTGCTGAAATGTTTTCCAAGAGACACTATGAACGTGCAACGGAGTTACTAAGCTTGTGTAATCTGTCTGCTTCTCCAACAGGTACTCCGGATCAAAGAGTAGTTTACTGCTATAGTGAAGCTCTGCGAGAGAGAATCAATAAGGAGACAAAATCGATAACAGGATTACAACTAGATAGACTTGTAGATTTTGAAGTGAAAACCAATTGGCGTTGAAGAGATTTCCTTGTGTACAAAGCCTCATGTAATTGCATGTTATCACGCACTTCCTTTTTACCAAGTCGCTCAATTTGCTTGTATTGAAGCCATTTTGAATAATTTTAAGTCAGAAAGACGACTTCATTTGATTGGTTTTGGAATCAGAAGTGGAGCTCATTGGATAAT</genome_strand>
        <mrna_strand>GAAACACTCTGGTTTACTATGCCAGTTTTAGTTCTGAATCTCATGTCCTATTGACCAGTGGAAGTATTTGAAATGGCACCAAGCACAAATACCTTGACCACACGTCGAAGAAAGAGGATGATCCTTCCATTGCTTCTCAACCCCTTAATTGACATAGTGATCTGTCTCTTGAAGTTTCATATGATTTGCAGCTCGCTCTTCTACTTCAAGCTTCTGCTGAAATGTTTTCCAAGAGACACTATGAACGTGCAACGGAGTTACTAAGCTTGTGTAATCTGTCTGCTTCTCCAACAGGTACTCCGGATCAAAGAGTAGTTTACTGCTATAGTGAAGCTCTGCGAGAGAGAATCAATAAGGAGACAAAATCGATAACAGGATTACAACTAGATAGACTTGTAGATTTTGAAGTGAAAACCAATTGGCGTTGAAGAGATTTCCTTGTGTACAAAGCCTCATGTAATTGCATGTTATCACGCCCTTCCTTTTTACCAAGTCGCTCAATTTGCTTGTATTGAAGCCATTTTGAATAATTTTAAGTCAGAAAGACGACTTCATTTGATTGGTTTTGGAATCAGAAGTGGAGCTCATTGGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369256" ref_strand="+" ref_description="SGN-E369256 [TUS-25-G20](-)">
      <seq>gtttactcagagtatgttcttggaggcatgttaacatggcctaatcaccttgaagttgttctaagattcattgaaagcctcaatacttgtgtgataatagtcatcgaaactgaggcaaacattaacgagccaatatttatggatcaatttaatgaatcagtgtttctgtatgctacactctttgattgtttggagacattcatgggccgagacaatcagcacaggatggaatttgaaagactggttcttagaaaaatcattcacaatgtgatcacttgtgaagaagaaggaaggatcttccacaacgtcaggctggaagtatgaagggctttgtttgaaaattttggtattaaggaaacagaattgagtgaattatccttgtaccaagcaaatctaatagtcgatcgatctgctcatggcttttgcactctggatatggatggaaattgccttactattaaatggaaaggaactccaatagtatttgcttcagcctggaagtttgtccatgattgatagatgccgtcttggggggatattggaggtgtcatgaagcctattagtacagaacccaaataagcatatgaaataaatcatctagtagtaatgaggaccctttgatggactaagattgaagaaacctccaaaatcccattgctaatttgtctgtattaagttggaaagatcgcattcggtgggtctgcaagagttgtatcttgttcataagtatttattcgtttgttacattttgttcattaattttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="62789" stop="64154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63089" g_stop="63854" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E369256" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63089" e_stop="63854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTCAGAGTATGTTCTTGGAGGCATGTTAACATGGCCTAATCACCTTGAAGTTGTTCTAAGATTCATTGAAAGCCTCAATACTTGTGTGATAATAGTCATCGAAACTGAGGCAAACATTAACGAGCCAATATTTATGGATCAATTTAATGAATCAGTGTTTCTGTATGCTACACTCTTTGATTGTTTGGAGACATTCATGGGCCGAGACAATCAGCACAGGATGGAATTTGAAAGACTGGTTCTTAGAAAAATCATTCACAATGTGATCACTTGTGAAGGAGAAGGAAGGATCTTCCACAACGTCAGGCTGGAAGTATGGAGGGCTTTGTTTGAAAATTTTGGTATTAAGGAAACAGAATTGAGTGAATTATCCTTGTACCAAGCAAATCTAATAGTCGATCGATCTGCTCATGGCTTTTGCACTCTGGATATGGATGGAAATTGCCTTACTATTAAATGGAAAGGAACTCCAATAGTATTTGCTTCAGCCTGGAAGTTTGTCCATGATTGATAGATGCCGTCTTGGGGGGATATTGGAGGTGTCATGAAGCCTATTAGTACAGAACCCAAATAAGCATATGAAATAAATCATCTAGTAGTAATGAGGACCCTTTGATGGACTAAGATTGAAGAAACCTCCAAAATCCCATTGCTAATTTGTCTGTATTAAGTTGGAAAGATCGCATTCGGTGGGTCTGCAAGAGTTGTATCTTGTTCATAAGTATTTATTCGTTTGTTACATTTTGTTCATTAATTTTACA</genome_strand>
        <mrna_strand>GTTTACTCAGAGTATGTTCTTGGAGGCATGTTAACATGGCCTAATCACCTTGAAGTTGTTCTAAGATTCATTGAAAGCCTCAATACTTGTGTGATAATAGTCATCGAAACTGAGGCAAACATTAACGAGCCAATATTTATGGATCAATTTAATGAATCAGTGTTTCTGTATGCTACACTCTTTGATTGTTTGGAGACATTCATGGGCCGAGACAATCAGCACAGGATGGAATTTGAAAGACTGGTTCTTAGAAAAATCATTCACAATGTGATCACTTGTGAAGAAGAAGGAAGGATCTTCCACAACGTCAGGCTGGAAGTATGAAGGGCTTTGTTTGAAAATTTTGGTATTAAGGAAACAGAATTGAGTGAATTATCCTTGTACCAAGCAAATCTAATAGTCGATCGATCTGCTCATGGCTTTTGCACTCTGGATATGGATGGAAATTGCCTTACTATTAAATGGAAAGGAACTCCAATAGTATTTGCTTCAGCCTGGAAGTTTGTCCATGATTGATAGATGCCGTCTTGGGGGGATATTGGAGGTGTCATGAAGCCTATTAGTACAGAACCCAAATAAGCATATGAAATAAATCATCTAGTAGTAATGAGGACCCTTTGATGGACTAAGATTGAAGAAACCTCCAAAATCCCATTGCTAATTTGTCTGTATTAAGTTGGAAAGATCGCATTCGGTGGGTCTGCAAGAGTTGTATCTTGTTCATAAGTATTTATTCGTTTGTTACATTTTGTTCATTAATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284128" ref_strand="-" ref_description="SGN-E284128 [cLER-13-D2]">
      <seq>aaaatcaagtcattcctattgggaaaacacggacaagcataaaagtatatatggtaaatgtaatggaaataaaatgagaaaataacgacaccaataattttacgtggaagcccttctgaataaggaaaaaaaccacnggccaacgaggagccataatgttgaagagctatcgctttcaaccgcattcaccatatcaacaagcagaggccgtagtccagtattgaccacgacgtttgttaccacgagccacaaccaaggaacccttaatgagcttccattttccatcaccgttggtactaacatatccttcatcatctaaaacaccaacagaaattaggtgcagacgaacatcaagagcatgtttcacattgttcaaaactagtttagttccaatactagtttccaaacaaattgtaccaataccaaccaccctagaaacagtctttttacccatactcaaggttccaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="67799" stop="72058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67917" g_stop="67934" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.611"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67935" i_stop="68100" i_length="166">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68101" g_stop="68230" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="149" r_length="131" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68231" i_stop="71433" i_length="3203">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71434" g_stop="71758" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="472" r_length="323" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E284128" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284128" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67917" e_stop="67934"/>
          <exon e_start="68101" e_stop="68230"/>
          <exon e_start="71434" e_stop="71758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCCA-CCTTTCCTGAATAACCTTACTTTCATGTCTTAATATGGCCCTGAGAATGGAAAAAGAACACAATTTTATTGTTTCGTCCTCACAACCTACAAGCGTTTGGGAAGGATGAATTGCGCTCCCAAGAAAGAATTTATGGATTCTCTCCCAATAAGCTGGACAGTAGGTGGAATGATTTGTTGGGAAAACACGGACAAGCACAAAAGTATATATGGTTAATGTAATGGAAATAAAATGAGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAATCACGGGCCAA-GAGGAGCGACTGATATTACTATAGTAAGGAATTTTACACTGTGTAGTCACGAATACAACACTCAATGTGACTACTACACACTCAAAAGGAACAACACTCTTTTGGTTTCCGTCTTACTAAAATATAGCTCACACTCTATTTTTCTTCACAGACTATTTTCTTATATATTCTATGGAATACCTCACTTTGCTCTCAAAATGGTTTTTCTCTCTAACTTGGTGTGTTCTACAAATGAGCAAGAATGCTCTATTTATAGAAGGATAAAACTATACCTATGTCACTAATGACATATGTAAACATAGCAAAGTCAAAAATAGTTGCAAATCTTACCAATTTGTCAACTACCAAATCTTTTCTTTTCAACTCCAATTACTATTCATTTTTAACAATTGCTTGTACCAATTGAATAGCTAAAGTTGACTAAAACAATGGGATGGATTCAACAAATCTCCCCCTCCAGTCCCATTTACTAGAAGAAGGTATCTTCAACTTCTTTAGAGAGAGCTCATACCCACAAGTTCTTTGCATAACTCGAACTTGTCTTTTGGTATCATCTTGGTCAGCATATCTGCAGGATTTTCACTTGTGTGAATCTTTTTGACGTGAAATGATTCATTCTCCACTTTCTCACGAATCCAATGATATCGGACGTCAATGTGTTTTGTTCTTGCATGGTACATGGAGTTCTTGCTCAAGTCTATTGCACTCTGACTGTCACAATAGACAATATACTCCATCTGATTCAAACCAAGCTCCTGAAGAAATTGCTTTAGCCATATCATCTTCTTGCAGGCTTCAGTAGCCGCAATATACTCAGCTTCAATTGTAGATAGTGAAACACACTTCTGCAACTTTGACTGCCATGATATAGCTCCCCCTGAAAAAGTAAACAAATATCCAGTAGTGGATTTTCTGTTATCAAGGTCACCTGCCATATCAGAATCTGTATAGCCTTTCAAGATTGGATTTGATGCTCCAAAACACAAACATTCATCTGAGCTTCCTCTAAGATACCTGAGTATCCATTTCACAGCTTCCCAATGCTCTTTTCTCTGATTTTCGAGAAATCTACTGACAACACCAACTGTGTGAGCAATATCAGGTCTAGTGCACACCATTGCATACATTAGACTTCCGACGATGGAGGAATATGGAACTTTGGCCATGTTCTCTTTTTCCTCCCTAGCTGTAGGACATTTCTTCTTGCTCAAGTTCATATGACCAGCAAGAGGTATACTCACAGGCTTTGCATTCTTCATATTGAAGCGCTCCAGTACGCGTTCAATGTACTTCTTCTGGGACAAATAAATCTTCTTTTCATCTCTAAGACGAGTAATTCTCATGCCCAAAATTTGCTTGGCATGACCCAAGTCTTTCATAGAAAAAGACTTACACAACTCTTTCTTGAGCTCGTCAATCTTGAAAGTATTCTTGCCCACAATCAACATATCATCCACATACAACAAAAGGATGATAAAATCTTTGTCAGAAAATTTTTGTACAAATACGCAATGATATGAAGAAGTCTTCTTATAGCCTTGCTCCCCTATAACAGATTCAAACTTTTTGTACCACTGTCTGGGAGCTTGTTTGAGGCCATAGAGATTCTTTTTGAGTTTGCATACAAAATTTTCTTTACCATCTACTTTGAAGCCCTCAGGTTGTTCCATATAAATATCTTCTTCTAAGTCACCGTGAAGGAAAGCCGTCTTCACATCCATCTGCTCAATCTCTAAATTAAGACTAGCAGCCAAACCTAGAACTGTGCGAATCGAGGACATTTTCACAACAGGAGAAAATATTTCGTCAAAGTCAATACCTTTCCTTTGACCGAATCCCTTAACAACCAATATAGCTTTATACCTGGGCTTCAAGTTGTGTTCTTCAACTTTAACTTTGAACACCCACTTGTTCTTCAAAGCTCTCATGCCCTTGGGCAATTTTACCAACTCATAAGTGTGGTTCTCATGCAAAGACTTCATCTCGTCTTGCATGGCTTCAATCCATTGATTCTTGTGCTCATCTTCCATGGCCTCCTCATAATATTCAGGTTCTCCCCCGTCAGTGAGTAACACATACTCATTGGGTGAATAACGGGAGGAAGGAAACCACTGTCTTGTGGACCTCCAAAGCGGAATATTTGATTCGTCCACAACTTCATGAGCAACAGGATCATCAATAACAATATCATTGTTATTATCAACATCAACATGTTGATTCAATACATGATTCTGGGCGTCACCATGATTATCAAACCCAATAACATCATGCACACTTGTGTGAGGAACTTCATCATGATGGACTATACCATCAAAATTTGAAGATTCTACCTTCTCCGCTTTGTCAATATCTTCAATTGTTTGATTCTCCATGAAAATAATATCATGGCTTCTCACAAGTTTCTTTTCAATTGGATCATATAGCCTGTAACCAAATTCATCTAGGCCATATCCAATGAAGATGCATTGCCTTGTCTTGGCATCTAATTTTGACCTCTCATCTTTCGGCACATGTACAAAAGCTTTGCAACCAAATACTCTCAAATGGTCATAAGAAACATCCTTTCCATACCAAACACTATTTGGTACATCACTTTGCAAAGCAACAACAAGAGATAGATTAATAACATGTGCAGCGGTCAATAAAGCCTCACCCCAAAATGAGTTTGGCAACTTTGCTTCAGAAAGCAAACATATAACTCTTTCCATCAAGGTCCTGCTCATCCTCTCAGCCAAACCATTAAACTGAGGAGTCTTGGGAGGAGTCTTCTGGTGTATAATACCTTGATGCTTGCAGTATTCGTCAAATGGTCCACAATATTCACCACCATTATCAGTACGAATACATTTCAATTTCTTTCCAATTTCTCTTTCAACTGAAGCCTGAAACTGCTTAAAGACACCTAGCACTTGGTCTTTAGTCTTCAAGACATAGACCCAAAGTTTTCTCGAGCAATCATCAATGAAAGTGACAAAGTAAAGTGCACCACCTAATGTCTTTGTCTTCATTGGACCACATAAATCAGAGTGCACTAACTCAAGCAACTCTGTCTTTCTCGAAGGAGGGTAGGACTTAAAGGAAACTCTATTTTGTTTACCAGCCAAGCAGTGCTCACATTTTTCTAATTTAGCACTTTGAAAATTTGACAATAATTTCTTCTTGGCTAGAACATTAAGTCCTTTCTCGCTAATGTGGCTCAGCCTCTTGTGCCATAATGTTGAAGAGCTATCGCTCTCAACCGCATTCACCATATCAACACAAGCAGAGGCCGTAGTCCAGTATAGACCACGACGTTTGTTACCACGAGCCACAACCAAGGAACCCTTAATGAGCTTCCATTTTCCATCACCGTTGGTACTAATATATCCTTCATCATCTAAAATACCAACAGAAATTAGGTGCAGACGAACATCACGAGTATGTTTCACATTGTTCAAAACTAGTTTAGTTCCAACACTAGTTTCCAAACAAATTGTACCAATACCAACCACCCTAGAAACAGTCTCATTACCCATACTCAAGGTTCCAAAATC</genome_strand>
        <mrna_strand>AAAATCAAGTCATTCCT-A......................................................................................................................................................................TTGGGAAAACACGGACAAGCATAAAAGTATATATGGTAAATGTAATGGAAATAAAATGAGAAAATAACGACACCAATAATTTTACGTGGAAGCCCTTCTGAATAAGGAAAAAAACCACNGGCCAACGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATAATGTTGAAGAGCTATCGCTTTCAACCGCATTCACCATATC-A-ACAAGCAGAGGCCGTAGTCCAGTATTGACCACGACGTTTGTTACCACGAGCCACAACCAAGGAACCCTTAATGAGCTTCCATTTTCCATCACCGTTGGTACTAACATATCCTTCATCATCTAAAACACCAACAGAAATTAGGTGCAGACGAACATCAAGAGCATGTTTCACATTGTTCAAAACTAGTTTAGTTCCAATACTAGTTTCCAAACAAATTGTACCAATACCAACCACCCTAGAAACAGTCTTTTTACCCATACTCAAGGTTCCAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="68731" stop="67925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68431" g_stop="68225" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68431" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGAATATATAAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCTATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTCGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204440" ref_strand="+" ref_description="SGN-E204440 [cLEC-13-L18]">
      <seq>acatcatggctacctcacaaatagctattattgtgcttctaggattacttgtcgccaccaacattcacataacaggtttctacttaaacattttgaattttcgacatcaaaaataatattattgatagtttttttttaccgtatactcttaattgtgtatcttttcccacactaacttgcatgactatattcattttacccaaagttacttgacatttttcggttttagcactcacaaacttttttaatttgagggtggtcagcagaggtgaatccaaaatttaaatcgaagtcaaaatctaatatttatatattttcttcgtttcaaaaataatgtcttttttttttagtttgtttaaaaaaaaggacccctttctttatttgacaacaatttaactttaactttccacattacatgtttaagaacacaagattaaagaaaattttggtatatttgacataagtttaattttggaccacaagattaaaaaatctattttcttttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="94993" stop="96002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95293" g_stop="95802" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E204440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95293" e_stop="95802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="-" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="98811" stop="97624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98511" g_stop="97924" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="-" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98511" e_stop="97924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAGAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAAAATTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATAATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAGATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATCCATCCGAGAGCGGCGAAAATGTATCATGATTTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTACCAGCAGGTCATGTGTGAGCACCAGCGGCCTGGTGGTGTATCTCAAAGGATGCCTATTCCTACTTGGAAGTAGGAGTGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352040" ref_strand="+" ref_description="SGN-E352040 [cTOS-13-B19]">
      <seq>ggtggtacctctaccccaactttgctgagctccaacaccactactagaaactctatcaccctacctgactgtactctgcaacgacctctaccctgtagagctagtggtctagtatggaatgaagaattaggtcgaggcccaccacgacccctttaagaagtacactgccgcattagatgatcgggatctccacaagtaaaacaaaatctctaacctgggaactgctgtgtggaccctgaaaacccacaataattgcctcgccctgaaggtcgctgctgtgaaccgtacgagccctgaaccaggacataagaacccctagatgtttggccaccctcaaatattgtcttagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaatcaccatgaaactgacttgatatacgggcccttatagggtccccaaactcctccctctcttcatcaattccaactctttggaggcgctcataatggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="100062" stop="101138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100362" g_stop="100878" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E352040" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100362" e_stop="100878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTACATCTACCTCCACTCTGCTGAGCTGCAACACCACTACTAGAAACTCTATCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGTGCTGGTGGTCTAGTCTGGAATGAAGAATTAGGTCAAGTCCCACCACGACCCCGTTGTGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATTTCTGACCTGGGAACTGTTGTGTGGACCCTGAAAATCCACTATAATTTCCTCGCCCTGTAGGTCGCTGCTATGAACCGTACGAGCCCTAACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCT--CTCTCTCCATCAATTCCGCCTCTTTGGCGGCGCTCATAATAGACTGG</genome_strand>
        <mrna_strand>GGTGGTACCTCTACCCCAACTTTGCTGAGCTCCAACACCACTACTAGAAACTCTATCACC-CTACCTGACTGTACTCTGCAACGACCTCTACCCTGTAGAGCTAGTGGTCTAGTATGGAATGAAGAATTAGGTCGAGGCCCACCACGACCCCTTTAAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTAACCTGGGAACTGCTGTGTGGACCCTGAAAACCCACAATAATTGCCTCGCCCTGAAGGTCGCTGCTGTGAACCGTACGAGCCCTGAACCAGGACATAAGAACCCCTAGATGTTTGGCCACCCTCAAATATTGTCTTAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAATCACCATGAAACTGACTTGATATACGGGCCCTTATAGGGTCCCCAAACTCCTCCCTCTCTTCATCAATTCCAACTCTTTGGAGGCGCTCATAATGGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="100341" stop="101368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100640" g_stop="101066" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100640" e_stop="101066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACCGTACGAGCCCTAACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCCGCCTCTTTGGCGGCGCTCATAATAGACTGGAAAGAAGTCCCCTCCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAA</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAGT-CCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AA-CTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577887" ref_strand="+" ref_description="SGN-E577887 [LE08AH11]">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="101187" stop="102089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101487" g_stop="101789" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E577887" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101487" e_stop="101789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTGAGCCCCCTCTCTAGTACGGGAGTCATGTGGTGTAGTAGTCGCACCACCACCTTGAGAAAAGCCTTCAAGCACACTTAACACCCTCAATAGTGTATCCTGAAGCAAAGGTATGACTACAGGATCTGGAGGAACCTGGTCCTTCCTGCCATCAATCTGAGGTTCTGTAGAGACCTCTCTAGCACGACCTCTCACTGGAGCTGCTCTACGTCCATGACCTCTGGCTACTGTCATACTACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACAACTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731758" ref_strand="+" ref_description="SGN-E731758 [LA28AD11]">
      <seq>ctctcttctttctgctgctgcttctttaaatacggtgcttctccccatcaaaagtatacatcgccttcgccttcaccagatttgtttggttcgtctctttcatctcttgccacttatttatggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaacccagatattgagaaggagatgaagagtgaaaaacctgtgaagaagagtaagaggaagcataagtcagatacagagtcagggactgatagtgaggcttctgtgtttgaatctggcagtgaggcgtcatcagtcacagggtcaaattattcttctggggaaagtgactcaagcgatagttcttcaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118091" stop="120158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118391" g_stop="118512" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119858" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="801" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E731758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118391" e_stop="118512"/>
          <exon e_start="119179" e_stop="119858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCTTTCTGCTGCTGCTTCTTTAAAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGAT</genome_strand>
        <mrna_strand>CTCTCTTCTTTCTGCTGCTGCTTCTTT-AAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAAATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325727" ref_strand="+" ref_description="SGN-E325727 [cTOC-15-L5]">
      <seq>ttctttctgctgctgcttctttaaaatacggtgcttctccccatcaaaagtatacatcgccttcgccttcaccagatttgtttggttcgtctctttcatctcttgccacttatttatggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatggagagggtgtacatatcacgaccatctcgcacgcagcagctgnaaaatccaaagttgaggatgaaagttcagcatcttatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118096" stop="119962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118396" g_stop="118512" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119662" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="601" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E325727" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118396" e_stop="118512"/>
          <exon e_start="119179" e_stop="119662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTGCTGCTGCTTCTTTAAAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAAT-GAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCT</genome_strand>
        <mrna_strand>TTCTTTCTGCTGCTGCTTCTTTAAAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGNAAAATCCAAAGTTGAGGATGAAAG-TTCAGCATCTTATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322320" ref_strand="+" ref_description="SGN-E322320 [cTOB-24-E12]">
      <seq>tttctgctgctgcttctttaaatacggtgcttctccccatcaaaagtatacatcgccttcgccttcaccagatttgtttggttcgtctctttcatctcttgccacttatttatggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118099" stop="119962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118399" g_stop="118512" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119662" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="597" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E322320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118399" e_stop="118512"/>
          <exon e_start="119179" e_stop="119662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGCTGCTGCTTCTTTAAAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCT</genome_strand>
        <mrna_strand>TTTCTGCTGCTGCTTCTTT-AAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303080" ref_strand="+" ref_description="SGN-E303080 [cLEW-26-P5]">
      <seq>tcgccttcgccttcaccagatttgtttgggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaaaaaagtggtgctcaggatgcaccagaaaggattaaggctcacgccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagctaagaggccgatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118152" stop="119891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118452" g_stop="118479" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118480" i_stop="119178" i_length="699">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119591" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="441" r_length="413" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E303080" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118452" e_stop="118479"/>
          <exon e_start="119179" e_stop="119591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATA</genome_strand>
        <mrna_strand>TCGCCTTCGCCTTCACCAGATTTGTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAAAAAGTGGTGCTCAGGATGCACCAGAAAGGATTAAGGCTCACGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCTAAGAGGCCGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698370" ref_strand="+" ref_description="SGN-E698370 [FA06AD09]">
      <seq>cccctttagatctgtttggttcgtctctttcatctcttgccacttatttatggtgctggtatagattaacataaactcaaagaggggacttctctttgctgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaaccaaagaggcagatgtatttaatgagtactgacaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcccgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagcttcaccatcttatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118169" stop="119962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118462" g_stop="118512" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666">
            <donor d_prob="0.972" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119662" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="535" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E698370" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118462" e_stop="118512"/>
          <exon e_start="119179" e_stop="119662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCT</genome_strand>
        <mrna_strand>CCCCTTTAGATCTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGCTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAACCAAAGAGGCAGATGTATTTAATGAGTACTGACAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCCCGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGCTTCACCATCTTATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297547" ref_strand="+" ref_description="SGN-E297547 [cLET-28-C23]">
      <seq>ttcaccagatttgtttggttcgtctctttcatctcttgccacttatttatggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaagccttgtcagctgcaaaaggtttgagtcgggctcaagctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaacccagatattgagaaggagatgaagagtgaaaaacctgtgaagaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118163" stop="120017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118463" g_stop="118512" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119717" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="589" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E297547" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118463" e_stop="118512"/>
          <exon e_start="119179" e_stop="119717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGT</genome_strand>
        <mrna_strand>TTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAAGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAAGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319947" ref_strand="+" ref_description="SGN-E319947 [cTOB-31-E11]">
      <seq>atctcttgccacttatttatggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaacccagatattgagaaggagatgaagagtgaaaaacctgtgaagaagagtaagaggaagcataagtcagatacagagtcagggactgatagtgaggcttctgtgtttgaatctggcagtgaggcgtcatcagtcacagggtcagattattcttctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118193" stop="120125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118493" g_stop="118512" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119179" g_stop="119825" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="667" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E319947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118493" e_stop="118512"/>
          <exon e_start="119179" e_stop="119825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTGCCACTTATTTATGTATGTATCTCCTTCATCTTTTTGGTTTACTGTTTCTGTCGCTTCTCTGCTTTTGGGTTGTGTTCTTCGTTTAATCGAATTTACTTCTTCTCTGTGCAATTTGGCGTCTTCGAATTTATATACATGTGTTTGTATTTGAAAGAATTATATAGGCTTTTGGTTCCTTCGGGATTTTTAATTTTGAGGTTTTGGGCCTAAAGCCGTGACTTTTAGGGTTGAGCCGCCCGCCCTTGGATATGTATGATGCACATTATCATTGTTTACTCCGCTTTTAGGATTAAATTGTTGTTGTTGTTGTTTTAATGTCGTTAATCAGATTCTTTTAATTAACTAACTAGTCTACTCGAATATCTAAGCAAGCATTCAATATTCAATTTTCAGAATACCCAAGACTTCCTTTGATTGATAGTTTCTGTTAACTTAAGACCACTAATTAGCTGAAAAGACAAATCTTTTTTGGGTATTGGGATAGTGTATCCTAATGAACTAACTTTGGAATGAGGCATAATTTATTGATCTTTTCTTGGGCATGCACTGTGCTTGGAAGGCTATAAATTGTAACAAAAATTGTGCTTACAAGAATATATTGTCATTACCTTTAGTGTTTTGGCTAGTATTTGGTTATCTTGTTGACAATTTTATCTCTTTGTCTATTCTTCTGTCCAGGGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGG</genome_strand>
        <mrna_strand>ATCTCTTGCCACTTATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300812" ref_strand="+" ref_description="SGN-E300812 [cLEW-8-G20]">
      <seq>agatttgtttgggtgctggtatagattaacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcacgctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcaaggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118878" stop="119971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119179" g_stop="119671" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="504" r_length="493" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E300812" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119179" e_stop="119671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCC</genome_strand>
        <mrna_strand>GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCACGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAAGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719265" ref_strand="+" ref_description="SGN-E719265 [FC07BB05]">
      <seq>tcgccttcgccttccccngatttgtttgggtgctggtatagattaacatcccctcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcaaaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcaaatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcaaaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118878" stop="119904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119179" g_stop="119604" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="454" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E719265" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119179" e_stop="119604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTC</genome_strand>
        <mrna_strand>GGTGCTGGTATAGATTAACATCCCCTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAAAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAAATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAAAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317559" ref_strand="+" ref_description="SGN-E317559 [cTOB-17-K23]">
      <seq>taacataaactcaaagaggggacttctctttgttgagagccaagattatggcatcctctaagaatgaagaaagtggtgctcaggatgcagcagaaaggattaaggctcaggccttgtcagctgcaaaaggtttgagtcgggctcaggctgagcgtgctgctactgctgctgcgagaaatgtcaatgcatatggacaaaaggaggaaggacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaacccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="118894" stop="119974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119194" g_stop="119674" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E317559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119194" e_stop="119674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGA</genome_strand>
        <mrna_strand>TAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733338" ref_strand="+" ref_description="SGN-E733338 [LB04CD10]">
      <seq>cagtacccagtcgatggcaggaaagaaaagaagcaaagaggcagatgtatttaatgagtactgagaaacaggtgcgactgggtgaaaggaaagacaagccttcaggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaacccagatattgagaaggagatgaagagtgaaaaacctgtgaagaagagtaagaggaagcataagtcagatacagagtcagggactgatagtgaggcttctgtgtttgaatctggcagtgaggcgtcatcagtcacagggtcagattattcttctggggaaagtgactcaagcgatagttcttcaactgattcagaggaagagaggaggaggaagaggaagaacaagaagaagaagaagcagaagaagaggagacaccggaaatacagctcaacatctgagtcctctgattcatactcagattccgagtctgattctgaagggaggactagccgtaagaagagcagcaagaggcataacaaaaagcggtgaagcattggacaagatgagaactccatatgtggtacctggttcttaaaacttgaaaatattcatatttatgtttgtgataaaagatcttttgagcgatgcacttaagataactgggattttcctgtctcaaaggttttgtagattgtcataagcttatgttgtggctgtagaaattcatgtggcgagaagtgtctcttgtattgaattttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="119099" stop="120550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119398" g_stop="120250" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E733338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119398" e_stop="120250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGATTCAGAGGAAGAGAGGAGGAGGAAGAGGAAGAACAAGAAGAAGAAGAAGCAGAAGAAGAGGAGACACCGGAAATACAGCTCAACATCTGAGTCCTCTGATTCATACTCAGATTCCGAGTCTGATTCTGAAGGGAGGACTAGCCGTAAGAAGAGCAGCAAGAGGCATAACAAAAAGCGGTGAAGCATTGGACAAGATGAGAACTCCATATGTGGTACCTGGTTCTTAAAACTTGAAAATATTCATATTTATGTTTGTGATAAAAGATCTTTTGAGCGATGCACTTAAGATAACTGGGATTTTCCTGTCTCAAAGGTTTTGTAGATTGTCATAAGCTTATGTTGTGGCTGTAGAATTCAATGTGGCGAGAGTTGTCTCTTGTATTGAATTTTTTC</genome_strand>
        <mrna_strand>CAGTACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGATTCAGAGGAAGAGAGGAGGAGGAAGAGGAAGAACAAGAAGAAGAAGAAGCAGAAGAAGAGGAGACACCGGAAATACAGCTCAACATCTGAGTCCTCTGATTCATACTCAGATTCCGAGTCTGATTCTGAAGGGAGGACTAGCCGTAAGAAGAGCAGCAAGAGGCATAACAAAAAGCGGTGAAGCATTGGACAAGATGAGAACTCCATATGTGGTACCTGGTTCTTAAAACTTGAAAATATTCATATTTATGTTTGTGATAAAAGATCTTTTGAGCGATGCACTTAAGATAACTGGGATTTTCCTGTCTCAAAGGTTTTGTAGATTGTCATAAGCTTATGTTGTGGCTGTAGAAATTCATGTGGCGAGAAGTGTCTCTTGTATTGAATTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715726" ref_strand="+" ref_description="SGN-E715726 [FB15AD08]">
      <seq>cggttccactcttggtgcagcttcacaatgtcagaaatgtttccaggcagggcattggacttatgagtgcaagaatgagagggtgtacatatcacgaccatctcgcacgcagcagctgaaaaatccaaagttgaggatgaaagtttcagcatcttatgatctagaaaacccagatattgagaaggagatgaagagtgaaaaacctgtgaagaagagtaagaggaagcataagtcagatacagagtcagggactgatagtgaggcttctgtgtttgaatctggcagtgaggcgtcatcagtcacagggtcagattattcttctggggaaagtgactcaagcgatagttcttcaactgattcagaggaagagaggaggaggaagaggaagaacaagaagaagaagaagcagaagaagaggagacaccggaaatacagctcaacatctgagtcctctgattcatactcagattccgagtctgattctgaagggaggactagccgtaagaagagcagcaagaggcataacaaaaagcggtgaagcattggacaagatgagaactccatatgtggtacctggttcttaaaacttgaaaatattcatatttatgtttgtgataaaagatcttttgagcgatgcacttaagataactgggattttcctgtctcaaaggttttgtagattgtcataagcttatgttgtggctgtagaattcaatgtggcgagagttgtctcttgtattgaattttttcatgtgctagcttgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0126F09-9tFgM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0126F09.1" temp_strand="+" temp_description="C01HBa0126F09.1  AC238908.3 htgs_phase:1 submitted_to_sgn_as:C01HBa0126F09 upload_account_name:manual">
        <position start="119202" stop="120568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119501" g_stop="120268" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0126F09.1" gen_strand="+" ref_id="SGN-E715726" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0126F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119501" e_stop="120268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGATTCAGAGGAAGAGAGGAGGAGGAAGAGGAAGAACAAGAAGAAGAAGAAGCAGAAGAAGAGGAGACACCGGAAATACAGCTCAACATCTGAGTCCTCTGATTCATACTCAGATTCCGAGTCTGATTCTGAAGGGAGGACTAGCCGTAAGAAGAGCAGCAAGAGGCATAACAAAAAGCGGTGAAGCATTGGACAAGATGAGAACTCCATATGTGGTACCTGGTTCTTAAAACTTGAAAATATTCATATTTATGTTTGTGATAAAAGATCTTTTGAGCGATGCACTTAAGATAACTGGGATTTTCCTGTCTCAAAGGTTTTGTAGATTGTCATAAGCTTATGTTGTGGCTGTAGAATTCAATGTGGCGAGAGTTGTCTCTTGTATTGAATTTTTTCATGTGCTAGCTTGCTCAT</genome_strand>
        <mrna_strand>CGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGATTCAGAGGAAGAGAGGAGGAGGAAGAGGAAGAACAAGAAGAAGAAGAAGCAGAAGAAGAGGAGACACCGGAAATACAGCTCAACATCTGAGTCCTCTGATTCATACTCAGATTCCGAGTCTGATTCTGAAGGGAGGACTAGCCGTAAGAAGAGCAGCAAGAGGCATAACAAAAAGCGGTGAAGCATTGGACAAGATGAGAACTCCATATGTGGTACCTGGTTCTTAAAACTTGAAAATATTCATATTTATGTTTGTGATAAAAGATCTTTTGAGCGATGCACTTAAGATAACTGGGATTTTCCTGTCTCAAAGGTTTTGTAGATTGTCATAAGCTTATGTTGTGGCTGTAGAATTCAATGTGGCGAGAGTTGTCTCTTGTATTGAATTTTTTCATGTGCTAGCTTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>579</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6819" PGL_stop="4208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6819" e_stop="6471"/>
            <exon e_start="5152" e_stop="5043"/>
            <exon e_start="4953" e_stop="4835"/>
            <exon e_start="4517" e_stop="4208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.165" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6819" e_stop="6471" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="6470" i_stop="5153" i_length="1318"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5152" e_stop="5043" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.165">
            <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4953" e_stop="4835" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4517" e_stop="4208" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6819" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6818" stop="6471"/>
              <exon start="5152" stop="5059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6780" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6774" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6773" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6769" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6767" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6758" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6751" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6722" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6720" stop="6471"/>
              <exon start="5152" stop="5129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6719" stop="6532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6718" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6713" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6712" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6706" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6706" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6703" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6703" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6703" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6691" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6672" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6633" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6630" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6616" stop="6471"/>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5099" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4918" stop="4835"/>
              <exon start="4517" stop="4208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4918" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4883" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4883" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4401" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAGTGGGTTGACATGTGGTAGCAAATACAGTGACAGATCAACATCGCACTACTTTTCCTTCTTCTTCATCAAAAAAAATCCATTTTGAACCCAATTGCTCTCTCTATCACTATATTGGTTTTTCAAGAAACTGTTTAACCAAGCAAAAATCTTGGAGTTGTAGGTATGGAAGGAGGTGGTAGATTTGTTGGGGTAGCAGTCGATTTCTCAGCTTGCAGCAACAAAGCTCTGAAATGGGCCATTGATAATATTCTTCGTAAAGGGGATCATCTTATTCTCGTCACTGTTCGTCCTGAAGGACACTATGAAGAAGGAGAGATGCAGCTCTGGGAGGCCACTGGTTCTC : CTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG : ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG : GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAATCTGGCT</gDNA_template>
            <first_frame> *  K  W  V  D  M  W  *  Q  I  Q  *  Q  I  N  I  A  L  L  F  L  L  L  H  Q  K  K  S  I  L  N  P  I  A  L  S  I  T  I  L  V  F  Q  E  T  V  *  P  S  K  N  L  G  V  V  G  M  E  G  G  G  R  F  V  G  V  A  V  D  F  S  A  C  S  N  K  A  L  K  W  A  I  D  N  I  L  R  K  G  D  H  L  I  L  V  T  V  R  P  E  G  H  Y  E  E  G  E  M  Q  L  W  E  A  T  G  S   : P  L  I  P  L  S  E  I  C  D  G  H  T  M  K  R  Y  G  V  N  P  D  P  E  T  L  Q  M  I  T  L  A  A  R  Q  M  E  :  I  T  V  V  M  K  I  F  W  G  D  A  R  E  K  L  C  E  A  I  D  K  T  P  L  S  C  L  V  I  G  N  R  G  L  G  K  I  K  R :   V  I  M  G  S  V  S  N  Y  V  V  N  N  A  T  C  P  V  T  V  V  K  N  A  E  D  *  F  Y  N  V  R  N  S  L  T  G  K  K  L  K  A  F  M  L  N  *  S  L  L  F  F  T  K  L  G  V  G  L  N  F  Y  L  I  V  N  I  E  H  V  D  V  C  I  V  Y  H  H  V  E  P  L  *  F  L  S  L  W  I  A  A  V  N  K  L  F  S  N  S  F  N  L  A </first_frame>
            <second_frame>  K  S  G  L  T  C  G  S  K  Y  S  D  R  S  T  S  H  Y  F  S  F  F  F  I  K  K  N  P  F  *  T  Q  L  L  S  L  S  L  Y  W  F  F  K  K  L  F  N  Q  A  K  I  L  E  L  *  V  W  K  E  V  V  D  L  L  G  *  Q  S  I  S  Q  L  A  A  T  K  L  *  N  G  P  L  I  I  F  F  V  K  G  I  I  L  F  S  S  L  F  V  L  K  D  T  M  K  K  E  R  C  S  S  G  R  P  L  V  L  :  L  *  Y  L  Y  Q  R  Y  V  M  A  T  Q  *  R  G  M  G  L  T  L  T  L  K  H  C  K  *  *  P  L  Q  L  G  R  W  R :   S  Q  *  S  *  K  F  S  G  E  M  L  E  R  S  Y  V  K  Q  L  I  K  L  P  *  A  V  W  S  *  G  T  E  G  L  E  R  S  R   : G  L  L  W  A  V  *  A  T  M  W  *  I  M  L  R  A  L  L  L  L  *  R  M  Q  K  T  N  F  T  M  C  G  T  P  *  L  A  K  S  *  R  L  L  C  *  I  S  R  F  C  F  L  L  S  L  V  S  D  *  T  S  I  L  S  *  T  L  N  M  L  M  C  V  L  C  T  I  M  L  N  L  C  N  S  C  H  Y  G  L  L  Q  *  I  N  F  F  R  T  P  S  I  W   </second_frame>
            <third_frame>   K  V  G  *  H  V  V  A  N  T  V  T  D  Q  H  R  T  T  F  P  S  S  S  S  K  K  I  H  F  E  P  N  C  S  L  Y  H  Y  I  G  F  S  R  N  C  L  T  K  Q  K  S  W  S  C  R  Y  G  R  R  W  *  I  C  W  G  S  S  R  F  L  S  L  Q  Q  Q  S  S  E  M  G  H  *  *  Y  S  S  *  R  G  S  S  Y  S  R  H  C  S  S  *  R  T  L  *  R  R  R  D  A  A  L  G  G  H  W  F  S :   F  N  T  F  I  R  D  M  *  W  P  H  N  E  E  V  W  G  *  P  *  P  *  N  I  A  N  D  N  P  C  S  *  A  D  G   : D  H  S  S  H  E  N  F  L  G  R  C  S  R  E  V  M  *  S  N  *  *  N  S  L  E  L  S  G  H  R  E  Q  R  A  W  K  D  Q  E  :  G  Y  Y  G  Q  C  K  Q  L  C  G  E  *  C  Y  V  P  C  Y  C  C  E  E  C  R  R  L  I  L  Q  C  A  E  L  L  N  W  Q  K  A  K  G  F  Y  V  K  L  V  A  S  V  F  Y  *  A  W  C  R  I  K  L  L  S  Y  R  E  H  *  T  C  *  C  V  Y  C  V  P  S  C  *  T  S  V  I  P  V  T  M  D  C  C  S  K  *  T  F  F  E  L  L  Q  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6678" stop="6471"/>
                    <exon start="5152" stop="5043"/>
                    <exon start="4953" stop="4835"/>
                    <exon start="4517" stop="4436"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSKNLGVVGMEGGGRFVGVAVDFSACSNKALKWAIDNILRKGDHLILVTVRPEGHYEEGEMQLWEATGSPLIPLSEICDGHTMKRYGVNPDPETLQMITLAARQMEITVVMKIFWGDAREKLCEAIDKTPLSCLVIGNRGLGKIKRVIMGSVSNYVVNNATCPVTVVKNAED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5679" e_stop="5043"/>
            <exon e_start="4953" e_stop="4835"/>
            <exon e_start="4517" e_stop="4208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.165" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="5679" e_stop="5043" e_length="637"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.165">
            <gDNA_intron_boundary i_start="5042" i_stop="4954" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4953" e_stop="4835" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="4834" i_stop="4518" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4517" e_stop="4208" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5679" stop="5060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5679" stop="5238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5153" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5152" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5099" stop="5043"/>
              <exon start="4953" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4918" stop="4835"/>
              <exon start="4517" stop="4208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4918" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4883" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4883" stop="4835"/>
              <exon start="4517" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4401" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGTATAGATGTGAAGTCTTAACAGTTACTTATATTAATATACCTTAAAGGGTGTGTTCAGTATGAAGGAAAATGCATTTCTCTAGGAAAAGTAATGAATTTCTTACTTTCATTTTTTTCTTTTTTGGTGTTCAGTATGCAAAGTATTATCCTAAAATCATTTGTACGTATATGATCTAGACAAACACTATGTGAGGTGGGTAGGGGGATAAGTGCGATGAGGTAAAGTGAATATGAGGAACTTATTTTCCTAGAGAAAATGAGTTCTTAGGAATTTGACCAACCAAACATGTGAAAATTGGAACACACCCAAAGTGTTAAATCATCTAATTCATGCTTGCACCCATCTTTATTTACGAATAACTTTTTTGATGTGTCTAGGTGCAAGAGTTGTAGTAGCTTTGTAAGAATTGTAGTAGTGAAAGCATGTCACCTTGGGCTTGTGTTACTGGTAAAATATGTGATATTTGATTAGTGAGATTCCATCTTCTGATACATCTTTTGAGATTCATTTTTTTGTTGCAGCTTTAATACCTTTATCAGAGATATGTGATGGCCACACAATGAAGAGGTATGGGGTTAACCCTGACCCTGAAACATTGCAAATGATAACCCTTGCAGCTAGGCAGATGGAG : ATCACAGTAGTCATGAAAATTTTCTGGGGAGATGCTCGAGAGAAGTTATGTGAAGCAATTGATAAAACTCCCTTGAGCTGTCTGGTCATAGGGAACAGAGGGCTTGGAAAGATCAAGAG : GGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCAATCTGGCT</gDNA_template>
            <first_frame> E  C  I  D  V  K  S  *  Q  L  L  I  L  I  Y  L  K  G  C  V  Q  Y  E  G  K  C  I  S  L  G  K  V  M  N  F  L  L  S  F  F  S  F  L  V  F  S  M  Q  S  I  I  L  K  S  F  V  R  I  *  S  R  Q  T  L  C  E  V  G  R  G  I  S  A  M  R  *  S  E  Y  E  E  L  I  F  L  E  K  M  S  S  *  E  F  D  Q  P  N  M  *  K  L  E  H  T  Q  S  V  K  S  S  N  S  C  L  H  P  S  L  F  T  N  N  F  F  D  V  S  R  C  K  S  C  S  S  F  V  R  I  V  V  V  K  A  C  H  L  G  L  V  L  L  V  K  Y  V  I  F  D  *  *  D  S  I  F  *  Y  I  F  *  D  S  F  F  C  C  S  F  N  T  F  I  R  D  M  *  W  P  H  N  E  E  V  W  G  *  P  *  P  *  N  I  A  N  D  N  P  C  S  *  A  D  G   : D  H  S  S  H  E  N  F  L  G  R  C  S  R  E  V  M  *  S  N  *  *  N  S  L  E  L  S  G  H  R  E  Q  R  A  W  K  D  Q  E  :  G  Y  Y  G  Q  C  K  Q  L  C  G  E  *  C  Y  V  P  C  Y  C  C  E  E  C  R  R  L  I  L  Q  C  A  E  L  L  N  W  Q  K  A  K  G  F  Y  V  K  L  V  A  S  V  F  Y  *  A  W  C  R  I  K  L  L  S  Y  R  E  H  *  T  C  *  C  V  Y  C  V  P  S  C  *  T  S  V  I  P  V  T  M  D  C  C  S  K  *  T  F  F  E  L  L  Q  S  G  </first_frame>
            <second_frame>  N  V  *  M  *  S  L  N  S  Y  L  Y  *  Y  T  L  K  G  V  F  S  M  K  E  N  A  F  L  *  E  K  *  *  I  S  Y  F  H  F  F  L  F  W  C  S  V  C  K  V  L  S  *  N  H  L  Y  V  Y  D  L  D  K  H  Y  V  R  W  V  G  G  *  V  R  *  G  K  V  N  M  R  N  L  F  S  *  R  K  *  V  L  R  N  L  T  N  Q  T  C  E  N  W  N  T  P  K  V  L  N  H  L  I  H  A  C  T  H  L  Y  L  R  I  T  F  L  M  C  L  G  A  R  V  V  V  A  L  *  E  L  *  *  *  K  H  V  T  L  G  L  C  Y  W  *  N  M  *  Y  L  I  S  E  I  P  S  S  D  T  S  F  E  I  H  F  F  V  A  A  L  I  P  L  S  E  I  C  D  G  H  T  M  K  R  Y  G  V  N  P  D  P  E  T  L  Q  M  I  T  L  A  A  R  Q  M  E  :  I  T  V  V  M  K  I  F  W  G  D  A  R  E  K  L  C  E  A  I  D  K  T  P  L  S  C  L  V  I  G  N  R  G  L  G  K  I  K  R :   V  I  M  G  S  V  S  N  Y  V  V  N  N  A  T  C  P  V  T  V  V  K  N  A  E  D  *  F  Y  N  V  R  N  S  L  T  G  K  K  L  K  A  F  M  L  N  *  S  L  L  F  F  T  K  L  G  V  G  L  N  F  Y  L  I  V  N  I  E  H  V  D  V  C  I  V  Y  H  H  V  E  P  L  *  F  L  S  L  W  I  A  A  V  N  K  L  F  S  N  S  F  N  L  A </second_frame>
            <third_frame>   M  Y  R  C  E  V  L  T  V  T  Y  I  N  I  P  *  R  V  C  S  V  *  R  K  M  H  F  S  R  K  S  N  E  F  L  T  F  I  F  F  F  F  G  V  Q  Y  A  K  Y  Y  P  K  I  I  C  T  Y  M  I  *  T  N  T  M  *  G  G  *  G  D  K  C  D  E  V  K  *  I  *  G  T  Y  F  P  R  E  N  E  F  L  G  I  *  P  T  K  H  V  K  I  G  T  H  P  K  C  *  I  I  *  F  M  L  A  P  I  F  I  Y  E  *  L  F  *  C  V  *  V  Q  E  L  *  *  L  C  K  N  C  S  S  E  S  M  S  P  W  A  C  V  T  G  K  I  C  D  I  *  L  V  R  F  H  L  L  I  H  L  L  R  F  I  F  L  L  Q  L  *  Y  L  Y  Q  R  Y  V  M  A  T  Q  *  R  G  M  G  L  T  L  T  L  K  H  C  K  *  *  P  L  Q  L  G  R  W  R :   S  Q  *  S  *  K  F  S  G  E  M  L  E  R  S  Y  V  K  Q  L  I  K  L  P  *  A  V  W  S  *  G  T  E  G  L  E  R  S  R   : G  L  L  W  A  V  *  A  T  M  W  *  I  M  L  R  A  L  L  L  L  *  R  M  Q  K  T  N  F  T  M  C  G  T  P  *  L  A  K  S  *  R  L  L  C  *  I  S  R  F  C  F  L  L  S  L  V  S  D  *  T  S  I  L  S  *  T  L  N  M  L  M  C  V  L  C  T  I  M  L  N  L  C  N  S  C  H  Y  G  L  L  Q  *  I  N  F  F  R  T  P  S  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5213" stop="5043"/>
                    <exon start="4953" stop="4835"/>
                    <exon start="4517" stop="4436"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLISEIPSSDTSFEIHFFVAALIPLSEICDGHTMKRYGVNPDPETLQMITLAARQMEITVVMKIFWGDAREKLCEAIDKTPLSCLVIGNRGLGKIKRVIMGSVSNYVVNNATCPVTVVKNAED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4520" e_stop="4216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="4520" e_stop="4216" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4520" stop="4224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4401" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGTTATTATGGGCAGTGTAAGCAACTATGTGGTGAATAATGCTACGTGCCCTGTTACTGTTGTGAAGAATGCAGAAGACTAATTTTACAATGTGCGGAACTCCTTAACTGGCAAAAAGCTAAAGGCTTTTATGTTAAATTAGTCGCTTCTGTTTTTTACTAAGCTTGGTGTCGGATTAAACTTCTATCTTATCGTGAACATTGAACATGTTGATGTGTGTATTGTGTACCATCATGTTGAACCTCTGTAATTCCTGTCACTATGGATTGCTGCAGTAAATAAACTTTTTTCGAACTCCTTCA</gDNA_template>
            <first_frame> Q  G  Y  Y  G  Q  C  K  Q  L  C  G  E  *  C  Y  V  P  C  Y  C  C  E  E  C  R  R  L  I  L  Q  C  A  E  L  L  N  W  Q  K  A  K  G  F  Y  V  K  L  V  A  S  V  F  Y  *  A  W  C  R  I  K  L  L  S  Y  R  E  H  *  T  C  *  C  V  Y  C  V  P  S  C  *  T  S  V  I  P  V  T  M  D  C  C  S  K  *  T  F  F  E  L  L   </first_frame>
            <second_frame>  R  V  I  M  G  S  V  S  N  Y  V  V  N  N  A  T  C  P  V  T  V  V  K  N  A  E  D  *  F  Y  N  V  R  N  S  L  T  G  K  K  L  K  A  F  M  L  N  *  S  L  L  F  F  T  K  L  G  V  G  L  N  F  Y  L  I  V  N  I  E  H  V  D  V  C  I  V  Y  H  H  V  E  P  L  *  F  L  S  L  W  I  A  A  V  N  K  L  F  S  N  S  F  </second_frame>
            <third_frame>   G  L  L  W  A  V  *  A  T  M  W  *  I  M  L  R  A  L  L  L  L  *  R  M  Q  K  T  N  F  T  M  C  G  T  P  *  L  A  K  S  *  R  L  L  C  *  I  S  R  F  C  F  L  L  S  L  V  S  D  *  T  S  I  L  S  *  T  L  N  M  L  M  C  V  L  C  T  I  M  L  N  L  C  N  S  C  H  Y  G  L  L  Q  *  I  N  F  F  R  T  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0126F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17534" PGL_stop="16784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17534" e_stop="17401"/>
            <exon e_start="17306" e_stop="17165"/>
            <exon e_start="17089" e_stop="16784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="0.955"/>
          <exon-intron don_prob="0.945" acc_prob="0.599" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="17534" e_stop="17401" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="17400" i_stop="17307" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17306" e_stop="17165" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.599">
            <gDNA_intron_boundary i_start="17164" i_stop="17090" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="17089" e_stop="16784" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17534" stop="17401"/>
              <exon start="17306" stop="17165"/>
              <exon start="17089" stop="16784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17534" stop="17401"/>
              <exon start="17306" stop="17165"/>
              <exon start="17089" stop="16936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280241" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATTACTTCTCTGGAGGTTCAAGGTAAGTATGGTAGTTTGCAGAGGAAGCAAATTGATCTTGTTGATGACGAAGGTGTCAGTTCAAAATTTCTTTTGTGGGGTGAGCAGGTTCTGCTTGCAAACCTATTCAG : TGTGGGAAGTACGCTTGCCCTGGATAGACCATTTATCTCGAGTTCAACGGATAGTGCTGTTGAAACATCTCAAGAATGTTACCTTGAATATGGTACTGCAACACAGCTATATCTGGTGCCCTTTGTTCAGAATGAGGAGCAA : GTATCCCTAGCACTGACACAGAACCATAACAAAGGACCAAAACTATCAAGAGCTTTGGATCCAAGTCAGGGATTTGTAGTCTCCCAGGTTTTCTTGCCTTGCGATTCTCAAGGCTCTATTGACTTCAGTAATTATCCTTTCCGAGTAAGCCTGTGCTCCTTAACATTCTGTTATCAGATTCTATAGAAATAGAGATTTTTGGAATTTATATCTTCCTTGCATTTAGCTCTGAATTTCAGAACTAAAAAAAGAGTGGCTCTTCTTAAGATGTTTCTGACTTTTAAGGACATATTAATTGACATGCTA</gDNA_template>
            <first_frame> S  I  T  S  L  E  V  Q  G  K  Y  G  S  L  Q  R  K  Q  I  D  L  V  D  D  E  G  V  S  S  K  F  L  L  W  G  E  Q  V  L  L  A  N  L  F  S :   V  G  S  T  L  A  L  D  R  P  F  I  S  S  S  T  D  S  A  V  E  T  S  Q  E  C  Y  L  E  Y  G  T  A  T  Q  L  Y  L  V  P  F  V  Q  N  E  E  Q  :  V  S  L  A  L  T  Q  N  H  N  K  G  P  K  L  S  R  A  L  D  P  S  Q  G  F  V  V  S  Q  V  F  L  P  C  D  S  Q  G  S  I  D  F  S  N  Y  P  F  R  V  S  L  C  S  L  T  F  C  Y  Q  I  L  *  K  *  R  F  L  E  F  I  S  S  L  H  L  A  L  N  F  R  T  K  K  R  V  A  L  L  K  M  F  L  T  F  K  D  I  L  I  D  M  L </first_frame>
            <second_frame>  L  L  L  L  W  R  F  K  V  S  M  V  V  C  R  G  S  K  L  I  L  L  M  T  K  V  S  V  Q  N  F  F  C  G  V  S  R  F  C  L  Q  T  Y  S   : V  W  E  V  R  L  P  W  I  D  H  L  S  R  V  Q  R  I  V  L  L  K  H  L  K  N  V  T  L  N  M  V  L  Q  H  S  Y  I  W  C  P  L  F  R  M  R  S  K :   Y  P  *  H  *  H  R  T  I  T  K  D  Q  N  Y  Q  E  L  W  I  Q  V  R  D  L  *  S  P  R  F  S  C  L  A  I  L  K  A  L  L  T  S  V  I  I  L  S  E  *  A  C  A  P  *  H  S  V  I  R  F  Y  R  N  R  D  F  W  N  L  Y  L  P  C  I  *  L  *  I  S  E  L  K  K  E  W  L  F  L  R  C  F  *  L  L  R  T  Y  *  L  T  C   </second_frame>
            <third_frame>   Y  Y  F  S  G  G  S  R  *  V  W  *  F  A  E  E  A  N  *  S  C  *  *  R  R  C  Q  F  K  I  S  F  V  G  *  A  G  S  A  C  K  P  I  Q  :  C  G  K  Y  A  C  P  G  *  T  I  Y  L  E  F  N  G  *  C  C  *  N  I  S  R  M  L  P  *  I  W  Y  C  N  T  A  I  S  G  A  L  C  S  E  *  G  A   : S  I  P  S  T  D  T  E  P  *  Q  R  T  K  T  I  K  S  F  G  S  K  S  G  I  C  S  L  P  G  F  L  A  L  R  F  S  R  L  Y  *  L  Q  *  L  S  F  P  S  K  P  V  L  L  N  I  L  L  S  D  S  I  E  I  E  I  F  G  I  Y  I  F  L  A  F  S  S  E  F  Q  N  *  K  K  S  G  S  S  *  D  V  S  D  F  *  G  H  I  N  *  H  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17534" stop="17401"/>
                    <exon start="17306" stop="17165"/>
                    <exon start="17089" stop="16904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITSLEVQGKYGSLQRKQIDLVDDEGVSSKFLLWGEQVLLANLFSVGSTLALDRPFISSSTDSAVETSQECYLEYGTATQLYLVPFVQNEEQVSLALTQNHNKGPKLSRALDPSQGFVVSQVFLPCDSQGSIDFSNYPFRVSLCSLTFCYQIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21891" PGL_stop="21663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21891" e_stop="21663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21891" e_stop="21663" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21891" stop="21663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTACCGGAGAAGCTCTATTTCACATCAGGCATGACGGACAATGAGGCGTCAGCCATGGAAGTGGAGCGCTGCCAGTGGAATGGCGGAGGAGAAAGAGAAGTAGCAGTAGAAGAGGAAGAAGATCCATTTCTTCAATTCATTGAATACGCCAAGTCTCTTCTATCTCCCGATAGTGACGGTAATGGAGATGATTCGAAGGGACCTAGTTGGAGATGGATTGTTTCAAGG</gDNA_template>
            <first_frame> L  T  G  E  A  L  F  H  I  R  H  D  G  Q  *  G  V  S  H  G  S  G  A  L  P  V  E  W  R  R  R  K  R  S  S  S  R  R  G  R  R  S  I  S  S  I  H  *  I  R  Q  V  S  S  I  S  R  *  *  R  *  W  R  *  F  E  G  T  *  L  E  M  D  C  F  K  </first_frame>
            <second_frame>  L  P  E  K  L  Y  F  T  S  G  M  T  D  N  E  A  S  A  M  E  V  E  R  C  Q  W  N  G  G  G  E  R  E  V  A  V  E  E  E  E  D  P  F  L  Q  F  I  E  Y  A  K  S  L  L  S  P  D  S  D  G  N  G  D  D  S  K  G  P  S  W  R  W  I  V  S  R </second_frame>
            <third_frame>   Y  R  R  S  S  I  S  H  Q  A  *  R  T  M  R  R  Q  P  W  K  W  S  A  A  S  G  M  A  E  E  K  E  K  *  Q  *  K  R  K  K  I  H  F  F  N  S  L  N  T  P  S  L  F  Y  L  P  I  V  T  V  M  E  M  I  R  R  D  L  V  G  D  G  L  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21890" stop="21663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPEKLYFTSGMTDNEASAMEVERCQWNGGGEREVAVEEEEDPFLQFIEYAKSLLSPDSDGNGDDSKGPSWRWIVSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28899" PGL_stop="29416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28899" e_stop="29416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="28899" e_stop="29416" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28899" stop="29416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28905" stop="29374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28973" stop="29412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29232" stop="29412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGCACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  A  H  M  K  M  H  K  H  T  *  G  T  *  F  N  M  L  K  K  V  V  R  E  S  L  D  L  *  R  L  I  Y  S  P  C  L  M  R  I  T  R  I  Q  S  L  R  S  I  L  E  C  F  H  Q  T  S  S  Q  N  T  T  *  T  L  G  C  L  K  E  F  G  T  L  L  I  A  L  L  L  H  S  L  V  R  F  K  K  T  Y  L  K  A  Y  I  *  Y  L  H  A  I  L  C  L  Y  A  T  P  N  K  F  V  G  G  T  F  K  I  P  F  V  C  H  S  G  M  K  L  F  V  R  L  Y  I  S  I  H  H  Q  L  H  Y   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  V  H  T  *  K  C  T  N  I  L  E  E  L  N  S  T  C  *  R  R  *  S  E  K  A  W  T  Y  R  D  L  Y  I  R  H  V  *  *  E  *  Q  E  S  R  A  *  E  A  F  W  N  V  F  T  K  Q  A  A  K  I  Q  P  K  L  W  G  V  *  K  S  L  G  H  Y  *  *  H  C  F  F  T  H  *  *  D  L  K  R  H  I  *  K  H  I  Y  S  I  F  M  Q  F  Y  V  C  M  Q  H  Q  I  N  S  *  G  E  L  L  K  F  L  L  F  V  I  L  E  *  N  F  L  *  G  C  I  F  Q  Y  T  I  N  Y  I  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  C  T  H  E  N  A  Q  T  Y  L  R  N  L  I  Q  H  A  K  E  G  S  P  R  K  P  G  P  I  E  T  Y  I  F  A  M  F  D  E  N  N  K  N  P  E  L  E  K  H  F  G  M  F  S  P  N  K  Q  P  K  Y  N  L  N  F  G  V  S  E  R  V  W  D  I  T  N  S  T  A  S  S  L  T  S  E  I  *  K  D  I  F  E  S  I  Y  I  V  S  S  C  N  F  M  F  V  C  N  T  K  *  I  R  R  G  N  F  *  N  S  F  C  L  S  F  W  N  E  T  F  C  K  V  V  Y  F  N  T  P  S  I  T  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28901" stop="29248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFWCTHENAQTYLRNLIQHAKEGSPRKPGPIETYIFAMFDENNKNPELEKHFGMFSPNKQPKYNLNFGVSERVWDITNSTASSLTSEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="52064" PGL_stop="49836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52064" e_stop="51746"/>
            <exon e_start="51087" e_stop="49836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52064" e_stop="51746" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="51745" i_stop="51088" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="51087" e_stop="49836" e_length="1252"/>
          </exon>
        </exon-intron_info>
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            <referenceDNA id="SGN-E209670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50843" stop="50481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50842" stop="50138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50835" stop="50235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50828" stop="50302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50828" stop="50383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50828" stop="50395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50828" stop="50400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50810" stop="50025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50802" stop="50282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="50208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="50221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="50283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="50357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="50383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="50580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50800" stop="50411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50797" stop="50035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50797" stop="50303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50790" stop="50279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50783" stop="50183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50729" stop="50099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50729" stop="50283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50725" stop="50176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50717" stop="49948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50684" stop="50216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50670" stop="50219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50661" stop="50237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50660" stop="49955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50660" stop="50210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50651" stop="50168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50651" stop="50190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50649" stop="49975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50649" stop="50029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50648" stop="49903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50648" stop="50048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50645" stop="49956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50641" stop="50037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50638" stop="49911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210948" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50635" stop="49948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50633" stop="50020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50633" stop="50140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50610" stop="49950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50610" stop="50283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50602" stop="50258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50590" stop="50038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50590" stop="50066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50586" stop="49984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50581" stop="50283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50559" stop="49911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50544" stop="49911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211040" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50498" stop="49894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50498" stop="49898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50496" stop="49932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50496" stop="49939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50496" stop="49947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50425" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50419" stop="49949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50351" stop="49911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50091" stop="49911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAACTAGCTATATGTTCTTCCTTTTTTTTTTCAAGTCAAAGTTATACATCATCAAATTCATCTTCTTTTTTCCACAAAAATAAATAAATAAAATAATCAAGTTGATCAAGTCACCTGGCGGCTCTTAACAAATTCTAATAATATTCCACTTCAATTAATATCATACACAAGTCTATCTCAGTGTAGTTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG : AGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTACACTCTGATCTGGTAACTGCAAATTTTAATTATCACACATATCAATCAAGTTCTATGA</gDNA_template>
            <first_frame> P  N  *  L  Y  V  L  P  F  F  F  Q  V  K  V  I  H  H  Q  I  H  L  L  F  S  T  K  I  N  K  *  N  N  Q  V  D  Q  V  T  W  R  L  L  T  N  S  N  N  I  P  L  Q  L  I  S  Y  T  S  L  S  Q  C  S  Y  K  *  L  L  I  H  L  S  L  Y  Q  K  H  Y  F  S  S  N  I  M  A  T  S  Q  I  A  I  I  V  L  L  G  L  L  V  A  T  N  I  H  I  T   : E  A  Q  I  G  V  C  Y  G  M  M  G  N  N  L  P  S  H  S  E  V  I  Q  L  Y  K  S  R  N  I  R  R  L  R  L  Y  D  P  N  H  G  A  L  N  A  L  R  G  S  N  I  E  V  I  L  G  L  P  N  V  D  V  K  H  I  S  S  G  M  E  H  A  R  W  W  V  Q  K  N  V  R  D  F  W  P  H  V  K  I  K  Y  I  A  V  G  N  E  I  S  P  V  T  G  T  S  N  L  A  P  F  Q  V  P  A  L  V  N  I  Y  K  A  I  G  E  A  G  L  G  N  D  I  K  V  S  T  S  V  D  M  T  L  I  G  N  S  Y  P  P  S  Q  G  S  F  R  N  D  V  R  W  F  T  D  P  I  V  G  F  L  R  D  T  R  A  P  L  L  V  N  I  Y  P  Y  F  S  Y  S  G  N  P  G  Q  I  S  L  P  Y  A  L  F  T  A  P  N  V  V  V  Q  D  G  S  R  Q  Y  R  N  L  F  D  A  M  L  D  S  V  Y  A  A  M  D  R  T  G  G  G  S  V  G  I  V  V  S  E  S  G  W  P  S  A  G  A  F  G  A  T  H  E  N  A  Q  T  Y  L  R  N  L  I  Q  H  A  K  E  G  S  P  R  K  P  G  P  I  E  T  Y  I  F  A  M  F  D  E  N  N  K  N  P  E  L  E  K  H  F  G  M  F  S  P  N  K  Q  P  K  Y  N  L  N  F  G  V  S  E  R  V  W  D  I  T  N  S  T  A  S  S  L  T  S  E  I  *  K  D  I  F  E  S  I  Y  I  V  S  S  C  N  F  M  F  V  C  N  T  K  *  I  R  R  G  N  F  *  N  S  F  C  L  S  F  W  N  E  T  F  C  K  V  V  Y  F  N  T  P  S  I  T  L  F  P  C  L  I  T  L  *  S  G  N  C  K  F  *  L  S  H  I  S  I  K  F  Y   </first_frame>
            <second_frame>  L  T  S  Y  M  F  F  L  F  F  F  K  S  K  L  Y  I  I  K  F  I  F  F  F  P  Q  K  *  I  N  K  I  I  K  L  I  K  S  P  G  G  S  *  Q  I  L  I  I  F  H  F  N  *  Y  H  T  Q  V  Y  L  S  V  V  I  N  S  S  *  S  I  L  V  C  T  K  N  I  T  S  H  Q  T  S  W  L  P  H  K  *  L  L  L  C  F  *  D  Y  L  S  P  P  T  F  T  *  Q  :  R  L  K  *  V  F  V  M  E  *  W  G  T  T  C  H  H  I  L  K  L  Y  S  S  T  S  R  E  T  L  E  D  *  G  F  M  I  Q  I  M  E  L  *  M  R  *  E  D  Q  T  L  K  *  Y  *  D  F  Q  M  *  M  *  N  T  F  L  L  G  W  N  T  R  D  G  G  Y  R  R  T  L  E  I  S  G  L  M  L  K  L  S  I  *  L  L  V  M  K  S  A  L  L  L  A  L  P  I  L  P  H  F  K  F  L  L  W  L  T  F  T  K  Q  S  V  K  L  V  W  E  M  T  L  R  S  Q  R  L  *  T  *  R  *  L  A  I  L  I  H  H  H  R  V  H  L  G  T  M  L  D  G  L  L  I  Q  L  L  G  F  *  G  I  H  V  H  L  C  S  L  T  F  I  L  I  L  A  I  L  V  I  Q  D  R  F  H  F  R  M  L  F  L  Q  H  L  M  *  W  Y  K  M  D  R  V  N  I  G  T  Y  L  M  L  C  W  I  L  F  M  L  R  W  I  E  Q  E  E  D  L  *  E  *  L  C  Q  R  V  D  G  H  L  L  V  H  L  V  Q  H  M  K  M  H  K  H  T  *  G  T  *  F  N  M  L  K  K  V  V  R  E  S  L  D  L  *  R  L  I  Y  S  P  C  L  M  R  I  T  R  I  Q  S  L  R  S  I  L  E  C  F  H  Q  T  S  S  Q  N  T  T  *  T  L  G  C  L  K  E  F  G  T  L  L  I  A  L  L  L  H  S  L  V  R  F  K  K  T  Y  L  K  A  Y  I  *  Y  L  H  A  I  L  C  L  Y  A  T  P  N  K  F  V  G  G  T  F  K  I  P  F  V  C  H  S  G  M  K  L  F  V  R  L  Y  I  S  I  H  H  Q  L  H  Y  F  H  V  *  L  H  S  D  L  V  T  A  N  F  N  Y  H  T  Y  Q  S  S  S  M  </second_frame>
            <third_frame>   *  L  A  I  C  S  S  F  F  F  S  S  Q  S  Y  T  S  S  N  S  S  S  F  F  H  K  N  K  *  I  K  *  S  S  *  S  S  H  L  A  A  L  N  K  F  *  *  Y  S  T  S  I  N  I  I  H  K  S  I  S  V  *  L  *  I  A  L  N  P  S  *  F  V  P  K  T  L  L  L  I  K  H  H  G  Y  L  T  N  S  Y  Y  C  A  S  R  I  T  C  R  H  Q  H  S  H  N  R :   G  S  N  R  C  L  L  W  N  D  G  E  Q  L  A  I  T  F  *  S  Y  T  A  L  Q  V  E  K  H  *  K  T  E  A  L  *  S  K  S  W  S  F  E  C  A  K  R  I  K  H  *  S  D  I  R  T  S  K  C  R  C  E  T  H  F  F  W  D  G  T  R  E  M  V  G  T  E  E  R  *  R  F  L  A  S  C  *  N  *  V  Y  S  C  W  *  *  N  Q  P  C  Y  W  H  F  Q  S  C  P  I  S  S  S  C  F  G  *  H  L  Q  S  N  R  *  S  W  F  G  K  *  H  *  G  L  N  V  C  R  H  D  V  D  W  Q  F  L  S  T  I  T  G  F  I  *  E  R  C  *  M  V  Y  *  S  N  C  W  V  F  E  G  Y  T  C  T  F  A  R  *  H  L  S  L  F  *  L  F  W  *  S  R  T  D  F  T  S  V  C  S  F  Y  S  T  *  C  S  G  T  R  W  I  A  S  I  *  E  L  I  *  C  Y  V  G  F  C  L  C  C  D  G  S  N  R  R  R  I  C  R  N  S  C  V  R  E  W  M  A  I  C  W  C  I  W  C  N  T  *  K  C  T  N  I  L  E  E  L  N  S  T  C  *  R  R  *  S  E  K  A  W  T  Y  R  D  L  Y  I  R  H  V  *  *  E  *  Q  E  S  R  A  *  E  A  F  W  N  V  F  T  K  Q  A  A  K  I  Q  P  K  L  W  G  V  *  K  S  L  G  H  Y  *  *  H  C  F  F  T  H  *  *  D  L  K  R  H  I  *  K  H  I  Y  S  I  F  M  Q  F  Y  V  C  M  Q  H  Q  I  N  S  *  G  E  L  L  K  F  L  L  F  V  I  L  E  *  N  F  L  *  G  C  I  F  Q  Y  T  I  N  Y  I  I  S  M  F  D  Y  T  L  I  W  *  L  Q  I  L  I  I  T  H  I  N  Q  V  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51866" stop="51746"/>
                    <exon start="51087" stop="50075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIHLSLYQKHYFSSNIMATSQIAIIVLLGLLVATNIHITEAQIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWPSAGAFGATHENAQTYLRNLIQHAKEGSPRKPGPIETYIFAMFDENNKNPELEKHFGMFSPNKQPKYNLNFGVSERVWDITNSTASSLTSEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51820" e_stop="49894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="51820" e_stop="49894" e_length="1927"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51820" stop="51142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51820" stop="51162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51820" stop="51311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51161" stop="50437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51096" stop="50567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51095" stop="50456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51095" stop="50602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51095" stop="50614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51094" stop="50603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51094" stop="50629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51089" stop="50567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51089" stop="50699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51086" stop="50725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51079" stop="50305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51067" stop="50433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51062" stop="50543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51061" stop="50655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51054" stop="50281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51054" stop="50402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51052" stop="50399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51052" stop="50399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51051" stop="50531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51051" stop="50585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51051" stop="50640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51050" stop="50877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51046" stop="50402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51046" stop="50652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51029" stop="50531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51026" stop="50280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51026" stop="50669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51018" stop="50516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51006" stop="50601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51004" stop="50531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51004" stop="50644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50991" stop="50426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50991" stop="50497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50985" stop="50335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50985" stop="50377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50982" stop="50695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50975" stop="50367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210540" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="50351" stop="49911"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACATTACATGTTTAAGAACACAAGATTAAAGAAAATTTTGGTATATTTGACATAAGTTTAATTTTGGACCACAAGATTAAAAAATCTATTTTCTTTTTTCTTAAATTCCGTTCCAAATTAAACTAGGCTAATCTTTTTAAAACGGATGGAGTACTTATTTAGTGAACTTTTTTTTGAGACGTAAACAATTTTGAGCTAAAGCTATTAGATTCGGAGGAACCAGTAATTAATTACATCTGCCCTAGCATGTGTTTCTTTAAATTTTTCAAGTTTAGAAGAATTGGCTAAGTTTGTAAAACCCCATTTTCTGCTTGTTATTGAACAGAGGCTCAAATAGGTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTA</gDNA_template>
            <first_frame> T  S  W  L  P  H  K  *  L  L  L  C  F  *  D  Y  L  S  P  P  T  F  T  *  Q  V  S  T  *  T  F  *  I  F  D  I  K  N  N  I  I  D  S  F  F  L  P  Y  T  L  N  C  V  S  F  P  T  L  T  C  M  T  I  F  I  L  P  K  V  T  *  H  F  S  V  L  A  L  T  N  F  F  N  L  R  V  V  S  R  G  E  S  K  I  *  I  E  V  K  I  *  Y  L  Y  I  F  F  V  S  K  I  M  S  F  F  F  S  L  F  K  K  K  D  P  F  L  Y  L  T  T  I  *  L  *  L  S  T  L  H  V  *  E  H  K  I  K  E  N  F  G  I  F  D  I  S  L  I  L  D  H  K  I  K  K  S  I  F  F  F  L  K  F  R  S  K  L  N  *  A  N  L  F  K  T  D  G  V  L  I  *  *  T  F  F  *  D  V  N  N  F  E  L  K  L  L  D  S  E  E  P  V  I  N  Y  I  C  P  S  M  C  F  F  K  F  F  K  F  R  R  I  G  *  V  C  K  T  P  F  S  A  C  Y  *  T  E  A  Q  I  G  V  C  Y  G  M  M  G  N  N  L  P  S  H  S  E  V  I  Q  L  Y  K  S  R  N  I  R  R  L  R  L  Y  D  P  N  H  G  A  L  N  A  L  R  G  S  N  I  E  V  I  L  G  L  P  N  V  D  V  K  H  I  S  S  G  M  E  H  A  R  W  W  V  Q  K  N  V  R  D  F  W  P  H  V  K  I  K  Y  I  A  V  G  N  E  I  S  P  V  T  G  T  S  N  L  A  P  F  Q  V  P  A  L  V  N  I  Y  K  A  I  G  E  A  G  L  G  N  D  I  K  V  S  T  S  V  D  M  T  L  I  G  N  S  Y  P  P  S  Q  G  S  F  R  N  D  V  R  W  F  T  D  P  I  V  G  F  L  R  D  T  R  A  P  L  L  V  N  I  Y  P  Y  F  S  Y  S  G  N  P  G  Q  I  S  L  P  Y  A  L  F  T  A  P  N  V  V  V  Q  D  G  S  R  Q  Y  R  N  L  F  D  A  M  L  D  S  V  Y  A  A  M  D  R  T  G  G  G  S  V  G  I  V  V  S  E  S  G  W  P  S  A  G  A  F  G  A  T  H  E  N  A  Q  T  Y  L  R  N  L  I  Q  H  A  K  E  G  S  P  R  K  P  G  P  I  E  T  Y  I  F  A  M  F  D  E  N  N  K  N  P  E  L  E  K  H  F  G  M  F  S  P  N  K  Q  P  K  Y  N  L  N  F  G  V  S  E  R  V  W  D  I  T  N  S  T  A  S  S  L  T  S  E  I  *  K  D  I  F  E  S  I  Y  I  V  S  S  C  N  F  M  F  V  C  N  T  K  *  I  R  R  G  N  F  *  N  S  F  C  L  S  F  W  N  E  T  F  C  K  V  V  Y  F  N  T  P  S  I  T  L  F  P  C  L  I  </first_frame>
            <second_frame>  H  H  G  Y  L  T  N  S  Y  Y  C  A  S  R  I  T  C  R  H  Q  H  S  H  N  R  F  L  L  K  H  F  E  F  S  T  S  K  I  I  L  L  I  V  F  F  Y  R  I  L  L  I  V  Y  L  F  P  H  *  L  A  *  L  Y  S  F  Y  P  K  L  L  D  I  F  R  F  *  H  S  Q  T  F  L  I  *  G  W  S  A  E  V  N  P  K  F  K  S  K  S  K  S  N  I  Y  I  F  S  S  F  Q  K  *  C  L  F  F  L  V  C  L  K  K  R  T  P  F  F  I  *  Q  Q  F  N  F  N  F  P  H  Y  M  F  K  N  T  R  L  K  K  I  L  V  Y  L  T  *  V  *  F  W  T  T  R  L  K  N  L  F  S  F  F  L  N  S  V  P  N  *  T  R  L  I  F  L  K  R  M  E  Y  L  F  S  E  L  F  F  E  T  *  T  I  L  S  *  S  Y  *  I  R  R  N  Q  *  L  I  T  S  A  L  A  C  V  S  L  N  F  S  S  L  E  E  L  A  K  F  V  K  P  H  F  L  L  V  I  E  Q  R  L  K  *  V  F  V  M  E  *  W  G  T  T  C  H  H  I  L  K  L  Y  S  S  T  S  R  E  T  L  E  D  *  G  F  M  I  Q  I  M  E  L  *  M  R  *  E  D  Q  T  L  K  *  Y  *  D  F  Q  M  *  M  *  N  T  F  L  L  G  W  N  T  R  D  G  G  Y  R  R  T  L  E  I  S  G  L  M  L  K  L  S  I  *  L  L  V  M  K  S  A  L  L  L  A  L  P  I  L  P  H  F  K  F  L  L  W  L  T  F  T  K  Q  S  V  K  L  V  W  E  M  T  L  R  S  Q  R  L  *  T  *  R  *  L  A  I  L  I  H  H  H  R  V  H  L  G  T  M  L  D  G  L  L  I  Q  L  L  G  F  *  G  I  H  V  H  L  C  S  L  T  F  I  L  I  L  A  I  L  V  I  Q  D  R  F  H  F  R  M  L  F  L  Q  H  L  M  *  W  Y  K  M  D  R  V  N  I  G  T  Y  L  M  L  C  W  I  L  F  M  L  R  W  I  E  Q  E  E  D  L  *  E  *  L  C  Q  R  V  D  G  H  L  L  V  H  L  V  Q  H  M  K  M  H  K  H  T  *  G  T  *  F  N  M  L  K  K  V  V  R  E  S  L  D  L  *  R  L  I  Y  S  P  C  L  M  R  I  T  R  I  Q  S  L  R  S  I  L  E  C  F  H  Q  T  S  S  Q  N  T  T  *  T  L  G  C  L  K  E  F  G  T  L  L  I  A  L  L  L  H  S  L  V  R  F  K  K  T  Y  L  K  A  Y  I  *  Y  L  H  A  I  L  C  L  Y  A  T  P  N  K  F  V  G  G  T  F  K  I  P  F  V  C  H  S  G  M  K  L  F  V  R  L  Y  I  S  I  H  H  Q  L  H  Y  F  H  V  *  L </second_frame>
            <third_frame>   I  M  A  T  S  Q  I  A  I  I  V  L  L  G  L  L  V  A  T  N  I  H  I  T  G  F  Y  L  N  I  L  N  F  R  H  Q  K  *  Y  Y  *  *  F  F  F  T  V  Y  S  *  L  C  I  F  S  H  T  N  L  H  D  Y  I  H  F  T  Q  S  Y  L  T  F  F  G  F  S  T  H  K  L  F  *  F  E  G  G  Q  Q  R  *  I  Q  N  L  N  R  S  Q  N  L  I  F  I  Y  F  L  R  F  K  N  N  V  F  F  F  *  F  V  *  K  K  G  P  L  S  L  F  D  N  N  L  T  L  T  F  H  I  T  C  L  R  T  Q  D  *  R  K  F  W  Y  I  *  H  K  F  N  F  G  P  Q  D  *  K  I  Y  F  L  F  S  *  I  P  F  Q  I  K  L  G  *  S  F  *  N  G  W  S  T  Y  L  V  N  F  F  L  R  R  K  Q  F  *  A  K  A  I  R  F  G  G  T  S  N  *  L  H  L  P  *  H  V  F  L  *  I  F  Q  V  *  K  N  W  L  S  L  *  N  P  I  F  C  L  L  L  N  R  G  S  N  R  C  L  L  W  N  D  G  E  Q  L  A  I  T  F  *  S  Y  T  A  L  Q  V  E  K  H  *  K  T  E  A  L  *  S  K  S  W  S  F  E  C  A  K  R  I  K  H  *  S  D  I  R  T  S  K  C  R  C  E  T  H  F  F  W  D  G  T  R  E  M  V  G  T  E  E  R  *  R  F  L  A  S  C  *  N  *  V  Y  S  C  W  *  *  N  Q  P  C  Y  W  H  F  Q  S  C  P  I  S  S  S  C  F  G  *  H  L  Q  S  N  R  *  S  W  F  G  K  *  H  *  G  L  N  V  C  R  H  D  V  D  W  Q  F  L  S  T  I  T  G  F  I  *  E  R  C  *  M  V  Y  *  S  N  C  W  V  F  E  G  Y  T  C  T  F  A  R  *  H  L  S  L  F  *  L  F  W  *  S  R  T  D  F  T  S  V  C  S  F  Y  S  T  *  C  S  G  T  R  W  I  A  S  I  *  E  L  I  *  C  Y  V  G  F  C  L  C  C  D  G  S  N  R  R  R  I  C  R  N  S  C  V  R  E  W  M  A  I  C  W  C  I  W  C  N  T  *  K  C  T  N  I  L  E  E  L  N  S  T  C  *  R  R  *  S  E  K  A  W  T  Y  R  D  L  Y  I  R  H  V  *  *  E  *  Q  E  S  R  A  *  E  A  F  W  N  V  F  T  K  Q  A  A  K  I  Q  P  K  L  W  G  V  *  K  S  L  G  H  Y  *  *  H  C  F  F  T  H  *  *  D  L  K  R  H  I  *  K  H  I  Y  S  I  F  M  Q  F  Y  V  C  M  Q  H  Q  I  N  S  *  G  E  L  L  K  F  L  L  F  V  I  L  E  *  N  F  L  *  G  C  I  F  Q  Y  T  I  N  Y  I  I  S  M  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51091" stop="50075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEAQIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWPSAGAFGATHENAQTYLRNLIQHAKEGSPRKPGPIETYIFAMFDENNKNPELEKHFGMFSPNKQPKYNLNFGVSERVWDITNSTASSLTSEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51876" e_stop="51746"/>
            <exon e_start="51075" e_stop="49894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="51876" e_stop="51746" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51745" i_stop="51076" i_length="670"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="51075" e_stop="49894" e_length="1182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51876" stop="51746"/>
              <exon start="51075" stop="50746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51067" stop="50433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51062" stop="50543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51061" stop="50655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51054" stop="50281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51054" stop="50402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51052" stop="50399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51052" stop="50399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51051" stop="50531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51051" stop="50585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51051" stop="50640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51050" stop="50877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51046" stop="50402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51046" stop="50652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51029" stop="50531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51026" stop="50280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51026" stop="50669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51018" stop="50516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51006" stop="50601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51004" stop="50531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51004" stop="50644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50991" stop="50426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50991" stop="50497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50985" stop="50335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50985" stop="50377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50982" stop="50695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATAAATAGCTCTTAATCCATCTTAGTTTGTACCAAAAACATTACTTCTCATCAAACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAG : GTGTTTGTTATGGAATGATGGGGAACAACTTGCCATCACATTCTGAAGTTATACAGCTCTACAAGTCGAGAAACATTAGAAGACTGAGGCTTTATGATCCAAATCATGGAGCTTTGAATGCGCTAAGAGGATCAAACATTGAAGTGATATTAGGACTTCCAAATGTAGATGTGAAACACATTTCTTCTGGGATGGAACACGCGAGATGGTGGGTACAGAAGAACGTTAGAGATTTCTGGCCTCATGTTAAAATTAAGTATATAGCTGTTGGTAATGAAATCAGCCCTGTTACTGGCACTTCCAATCTTGCCCCATTTCAAGTTCCTGCTTTGGTTAACATTTACAAAGCAATCGGTGAAGCTGGTTTGGGAAATGACATTAAGGTCTCAACGTCTGTAGACATGACGTTGATTGGCAATTCTTATCCACCATCACAGGGTTCATTTAGGAACGATGTTAGATGGTTTACTGATCCAATTGTTGGGTTTTTGAGGGATACACGTGCACCTTTGCTCGTTAACATTTATCCTTATTTTAGCTATTCTGGTAATCCAGGACAGATTTCACTTCCGTATGCTCTTTTTACAGCACCTAATGTAGTGGTACAAGATGGATCGCGTCAATATAGGAACTTATTTGATGCTATGTTGGATTCTGTTTATGCTGCGATGGATCGAACAGGAGGAGGATCTGTAGGAATAGTTGTGTCAGAGAGTGGATGGCCATCTGCTGGTGCATTTGGTGCAACACATGAAAATGCACAAACATACTTGAGGAACTTAATTCAACATGCTAAAGAAGGTAGTCCGAGAAAGCCTGGACCTATAGAGACTTATATATTCGCCATGTTTGATGAGAATAACAAGAATCCAGAGCTTGAGAAGCATTTTGGAATGTTTTCACCAAACAAGCAGCCAAAATACAACCTAAACTTTGGGGTGTCTGAAAGAGTTTGGGACATTACTAATAGCACTGCTTCTTCACTCACTAGTGAGATTTAAAAAGACATATTTGAAAGCATATATATAGTATCTTCATGCAATTTTATGTTTGTATGCAACACCAAATAAATTCGTAGGGGGAACTTTTAAAATTCCTTTTGTTTGTCATTCTGGAATGAAACTTTTTGTAAGGTTGTATATTTCAATACACCATCAATTACATTATTTCCATGTTTGATTA</gDNA_template>
            <first_frame> L  *  I  A  L  N  P  S  *  F  V  P  K  T  L  L  L  I  K  H  H  G  Y  L  T  N  S  Y  Y  C  A  S  R  I  T  C  R  H  Q  H  S  H  N  R :   C  L  L  W  N  D  G  E  Q  L  A  I  T  F  *  S  Y  T  A  L  Q  V  E  K  H  *  K  T  E  A  L  *  S  K  S  W  S  F  E  C  A  K  R  I  K  H  *  S  D  I  R  T  S  K  C  R  C  E  T  H  F  F  W  D  G  T  R  E  M  V  G  T  E  E  R  *  R  F  L  A  S  C  *  N  *  V  Y  S  C  W  *  *  N  Q  P  C  Y  W  H  F  Q  S  C  P  I  S  S  S  C  F  G  *  H  L  Q  S  N  R  *  S  W  F  G  K  *  H  *  G  L  N  V  C  R  H  D  V  D  W  Q  F  L  S  T  I  T  G  F  I  *  E  R  C  *  M  V  Y  *  S  N  C  W  V  F  E  G  Y  T  C  T  F  A  R  *  H  L  S  L  F  *  L  F  W  *  S  R  T  D  F  T  S  V  C  S  F  Y  S  T  *  C  S  G  T  R  W  I  A  S  I  *  E  L  I  *  C  Y  V  G  F  C  L  C  C  D  G  S  N  R  R  R  I  C  R  N  S  C  V  R  E  W  M  A  I  C  W  C  I  W  C  N  T  *  K  C  T  N  I  L  E  E  L  N  S  T  C  *  R  R  *  S  E  K  A  W  T  Y  R  D  L  Y  I  R  H  V  *  *  E  *  Q  E  S  R  A  *  E  A  F  W  N  V  F  T  K  Q  A  A  K  I  Q  P  K  L  W  G  V  *  K  S  L  G  H  Y  *  *  H  C  F  F  T  H  *  *  D  L  K  R  H  I  *  K  H  I  Y  S  I  F  M  Q  F  Y  V  C  M  Q  H  Q  I  N  S  *  G  E  L  L  K  F  L  L  F  V  I  L  E  *  N  F  L  *  G  C  I  F  Q  Y  T  I  N  Y  I  I  S  M  F  D   </first_frame>
            <second_frame>  Y  K  *  L  L  I  H  L  S  L  Y  Q  K  H  Y  F  S  S  N  I  M  A  T  S  Q  I  A  I  I  V  L  L  G  L  L  V  A  T  N  I  H  I  T   : G  V  C  Y  G  M  M  G  N  N  L  P  S  H  S  E  V  I  Q  L  Y  K  S  R  N  I  R  R  L  R  L  Y  D  P  N  H  G  A  L  N  A  L  R  G  S  N  I  E  V  I  L  G  L  P  N  V  D  V  K  H  I  S  S  G  M  E  H  A  R  W  W  V  Q  K  N  V  R  D  F  W  P  H  V  K  I  K  Y  I  A  V  G  N  E  I  S  P  V  T  G  T  S  N  L  A  P  F  Q  V  P  A  L  V  N  I  Y  K  A  I  G  E  A  G  L  G  N  D  I  K  V  S  T  S  V  D  M  T  L  I  G  N  S  Y  P  P  S  Q  G  S  F  R  N  D  V  R  W  F  T  D  P  I  V  G  F  L  R  D  T  R  A  P  L  L  V  N  I  Y  P  Y  F  S  Y  S  G  N  P  G  Q  I  S  L  P  Y  A  L  F  T  A  P  N  V  V  V  Q  D  G  S  R  Q  Y  R  N  L  F  D  A  M  L  D  S  V  Y  A  A  M  D  R  T  G  G  G  S  V  G  I  V  V  S  E  S  G  W  P  S  A  G  A  F  G  A  T  H  E  N  A  Q  T  Y  L  R  N  L  I  Q  H  A  K  E  G  S  P  R  K  P  G  P  I  E  T  Y  I  F  A  M  F  D  E  N  N  K  N  P  E  L  E  K  H  F  G  M  F  S  P  N  K  Q  P  K  Y  N  L  N  F  G  V  S  E  R  V  W  D  I  T  N  S  T  A  S  S  L  T  S  E  I  *  K  D  I  F  E  S  I  Y  I  V  S  S  C  N  F  M  F  V  C  N  T  K  *  I  R  R  G  N  F  *  N  S  F  C  L  S  F  W  N  E  T  F  C  K  V  V  Y  F  N  T  P  S  I  T  L  F  P  C  L  I  </second_frame>
            <third_frame>   I  N  S  S  *  S  I  L  V  C  T  K  N  I  T  S  H  Q  T  S  W  L  P  H  K  *  L  L  L  C  F  *  D  Y  L  S  P  P  T  F  T  *  Q  :  V  F  V  M  E  *  W  G  T  T  C  H  H  I  L  K  L  Y  S  S  T  S  R  E  T  L  E  D  *  G  F  M  I  Q  I  M  E  L  *  M  R  *  E  D  Q  T  L  K  *  Y  *  D  F  Q  M  *  M  *  N  T  F  L  L  G  W  N  T  R  D  G  G  Y  R  R  T  L  E  I  S  G  L  M  L  K  L  S  I  *  L  L  V  M  K  S  A  L  L  L  A  L  P  I  L  P  H  F  K  F  L  L  W  L  T  F  T  K  Q  S  V  K  L  V  W  E  M  T  L  R  S  Q  R  L  *  T  *  R  *  L  A  I  L  I  H  H  H  R  V  H  L  G  T  M  L  D  G  L  L  I  Q  L  L  G  F  *  G  I  H  V  H  L  C  S  L  T  F  I  L  I  L  A  I  L  V  I  Q  D  R  F  H  F  R  M  L  F  L  Q  H  L  M  *  W  Y  K  M  D  R  V  N  I  G  T  Y  L  M  L  C  W  I  L  F  M  L  R  W  I  E  Q  E  E  D  L  *  E  *  L  C  Q  R  V  D  G  H  L  L  V  H  L  V  Q  H  M  K  M  H  K  H  T  *  G  T  *  F  N  M  L  K  K  V  V  R  E  S  L  D  L  *  R  L  I  Y  S  P  C  L  M  R  I  T  R  I  Q  S  L  R  S  I  L  E  C  F  H  Q  T  S  S  Q  N  T  T  *  T  L  G  C  L  K  E  F  G  T  L  L  I  A  L  L  L  H  S  L  V  R  F  K  K  T  Y  L  K  A  Y  I  *  Y  L  H  A  I  L  C  L  Y  A  T  P  N  K  F  V  G  G  T  F  K  I  P  F  V  C  H  S  G  M  K  L  F  V  R  L  Y  I  S  I  H  H  Q  L  H  Y  F  H  V  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51866" stop="51746"/>
                    <exon start="51075" stop="50075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIHLSLYQKHYFSSNIMATSQIAIIVLLGLLVATNIHITGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWPSAGAFGATHENAQTYLRNLIQHAKEGSPRKPGPIETYIFAMFDENNKNPELEKHFGMFSPNKQPKYNLNFGVSERVWDITNSTASSLTSEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49899" PGL_stop="50529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49899" e_stop="50529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49899" e_stop="50529" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49899" stop="50529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATGGAAATAATGTAATTGATGGTGTATTGAAATATACAACCTTACAAAAAGTTTCATTCCAGAATGACAAACAAAAGGAATTTTAAAAGTTCCCCCTACGAATTTATTTGGTGTTGCATACAAACATAAAATTGCATGAAGATACTATATATATGCTTTCAAATATGTCTTTTTAAATCTCACTAGTGAGTGAAGAAGCAGTGCTATTAGTAATGTCCCAAACTCTTTCAGACACCCCAAAGTTTAGGTTGTATTTTGGCTGCTTGTTTGGTGAAAACATTCCAAAATGCTTCTCAAGCTCTGGATTCTTGTTATTCTCATCAAACATGGCGAATATATAAGTCTCTATAGGTCCAGGCTTTCTCGGACTACCTTCTTTAGCATGTTGAATTAAGTTCCTCAAGTATGTTTGTGCATTTTCATGTGTTGCACCAAATGCACCAGCAGATGGCCATCCACTCTCTGACACAACTATTCCTACAGATCCTCCTCCTGTTCGATCCATCGCAGCATAAACAGAATCCAACATAGCATCAAATAAGTTCCTATATTGACGCGATCCATCTTGTACCACTACATTAGGTGCTGTAAAAAGAGCATACGGAAGTGAAATCTGTCCTGGATTAC</gDNA_template>
            <first_frame> K  H  G  N  N  V  I  D  G  V  L  K  Y  T  T  L  Q  K  V  S  F  Q  N  D  K  Q  K  E  F  *  K  F  P  L  R  I  Y  L  V  L  H  T  N  I  K  L  H  E  D  T  I  Y  M  L  S  N  M  S  F  *  I  S  L  V  S  E  E  A  V  L  L  V  M  S  Q  T  L  S  D  T  P  K  F  R  L  Y  F  G  C  L  F  G  E  N  I  P  K  C  F  S  S  S  G  F  L  L  F  S  S  N  M  A  N  I  *  V  S  I  G  P  G  F  L  G  L  P  S  L  A  C  *  I  K  F  L  K  Y  V  C  A  F  S  C  V  A  P  N  A  P  A  D  G  H  P  L  S  D  T  T  I  P  T  D  P  P  P  V  R  S  I  A  A  *  T  E  S  N  I  A  S  N  K  F  L  Y  *  R  D  P  S  C  T  T  T  L  G  A  V  K  R  A  Y  G  S  E  I  C  P  G  L  </first_frame>
            <second_frame>  N  M  E  I  M  *  L  M  V  Y  *  N  I  Q  P  Y  K  K  F  H  S  R  M  T  N  K  R  N  F  K  S  S  P  Y  E  F  I  W  C  C  I  Q  T  *  N  C  M  K  I  L  Y  I  C  F  Q  I  C  L  F  K  S  H  *  *  V  K  K  Q  C  Y  *  *  C  P  K  L  F  Q  T  P  Q  S  L  G  C  I  L  A  A  C  L  V  K  T  F  Q  N  A  S  Q  A  L  D  S  C  Y  S  H  Q  T  W  R  I  Y  K  S  L  *  V  Q  A  F  S  D  Y  L  L  *  H  V  E  L  S  S  S  S  M  F  V  H  F  H  V  L  H  Q  M  H  Q  Q  M  A  I  H  S  L  T  Q  L  F  L  Q  I  L  L  L  F  D  P  S  Q  H  K  Q  N  P  T  *  H  Q  I  S  S  Y  I  D  A  I  H  L  V  P  L  H  *  V  L  *  K  E  H  T  E  V  K  S  V  L  D  Y </second_frame>
            <third_frame>   T  W  K  *  C  N  *  W  C  I  E  I  Y  N  L  T  K  S  F  I  P  E  *  Q  T  K  G  I  L  K  V  P  P  T  N  L  F  G  V  A  Y  K  H  K  I  A  *  R  Y  Y  I  Y  A  F  K  Y  V  F  L  N  L  T  S  E  *  R  S  S  A  I  S  N  V  P  N  S  F  R  H  P  K  V  *  V  V  F  W  L  L  V  W  *  K  H  S  K  M  L  L  K  L  W  I  L  V  I  L  I  K  H  G  E  Y  I  S  L  Y  R  S  R  L  S  R  T  T  F  F  S  M  L  N  *  V  P  Q  V  C  L  C  I  F  M  C  C  T  K  C  T  S  R  W  P  S  T  L  *  H  N  Y  S  Y  R  S  S  S  C  S  I  H  R  S  I  N  R  I  Q  H  S  I  K  *  V  P  I  L  T  R  S  I  L  Y  H  Y  I  R  C  C  K  K  S  I  R  K  *  N  L  S  W  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0126F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="62276" PGL_stop="62879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62276" e_stop="62879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62276" e_stop="62879" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62276" stop="62867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACACTCTGGTTTACTATGCAGTTTTAGTTCTGAATCTCATGTCCTATTGACAGTGGAAGTATTTGAAATGGCACAAGCACAAATACTTGACCACACGTCGAAGAAAGAGGATGATCCTTCCATTGCTTCTCAACCCCTTAATTGACATAGTGATCTGTCTCTTGAAGTTTCATATGATTTGCAGCTCGCTCTTCTACTTCAAGCTTCTGCTGAAATGTTTTCCAAGAGACACTATGAACGTGCAACGGAGTTACTAAGCTTGTGTAATCTGTCTGCTTCTCCAACAGGTACTCCGGATCAAAGAGTAGTTTACTGCTATAGTGAAGCTCTGCGAGAGAGAATCAATAAGGAGACAAAATCGATAACAGGATTACAACTAGATAGACTTGTAGATTTTGAAGTGAAAACCAATTGGCGTTGAAGAGATTTCCTTGTGTACAAAGCCTCATGTAATTGCATGTTATCACGCACTTCCTTTTTACCAAGTCGCTCAATTTGCTTGTATTGAAGCCATTTTGAATAATTTTAAGTCAGAAAGACGACTTCATTTGATTGGTTTTGGAATCAGAAGTGGAGCTCATTGGATAATCCTTATGCAAGC</gDNA_template>
            <first_frame> E  T  L  W  F  T  M  Q  F  *  F  *  I  S  C  P  I  D  S  G  S  I  *  N  G  T  S  T  N  T  *  P  H  V  E  E  R  G  *  S  F  H  C  F  S  T  P  *  L  T  *  *  S  V  S  *  S  F  I  *  F  A  A  R  S  S  T  S  S  F  C  *  N  V  F  Q  E  T  L  *  T  C  N  G  V  T  K  L  V  *  S  V  C  F  S  N  R  Y  S  G  S  K  S  S  L  L  L  *  *  S  S  A  R  E  N  Q  *  G  D  K  I  D  N  R  I  T  T  R  *  T  C  R  F  *  S  E  N  Q  L  A  L  K  R  F  P  C  V  Q  S  L  M  *  L  H  V  I  T  H  F  L  F  T  K  S  L  N  L  L  V  L  K  P  F  *  I  I  L  S  Q  K  D  D  F  I  *  L  V  L  E  S  E  V  E  L  I  G  *  S  L  C  K  </first_frame>
            <second_frame>  K  H  S  G  L  L  C  S  F  S  S  E  S  H  V  L  L  T  V  E  V  F  E  M  A  Q  A  Q  I  L  D  H  T  S  K  K  E  D  D  P  S  I  A  S  Q  P  L  N  *  H  S  D  L  S  L  E  V  S  Y  D  L  Q  L  A  L  L  L  Q  A  S  A  E  M  F  S  K  R  H  Y  E  R  A  T  E  L  L  S  L  C  N  L  S  A  S  P  T  G  T  P  D  Q  R  V  V  Y  C  Y  S  E  A  L  R  E  R  I  N  K  E  T  K  S  I  T  G  L  Q  L  D  R  L  V  D  F  E  V  K  T  N  W  R  *  R  D  F  L  V  Y  K  A  S  C  N  C  M  L  S  R  T  S  F  L  P  S  R  S  I  C  L  Y  *  S  H  F  E  *  F  *  V  R  K  T  T  S  F  D  W  F  W  N  Q  K  W  S  S  L  D  N  P  Y  A  S </second_frame>
            <third_frame>   N  T  L  V  Y  Y  A  V  L  V  L  N  L  M  S  Y  *  Q  W  K  Y  L  K  W  H  K  H  K  Y  L  T  T  R  R  R  K  R  M  I  L  P  L  L  L  N  P  L  I  D  I  V  I  C  L  L  K  F  H  M  I  C  S  S  L  F  Y  F  K  L  L  L  K  C  F  P  R  D  T  M  N  V  Q  R  S  Y  *  A  C  V  I  C  L  L  L  Q  Q  V  L  R  I  K  E  *  F  T  A  I  V  K  L  C  E  R  E  S  I  R  R  Q  N  R  *  Q  D  Y  N  *  I  D  L  *  I  L  K  *  K  P  I  G  V  E  E  I  S  L  C  T  K  P  H  V  I  A  C  Y  H  A  L  P  F  Y  Q  V  A  Q  F  A  C  I  E  A  I  L  N  N  F  K  S  E  R  R  L  H  L  I  G  F  G  I  R  S  G  A  H  W  I  I  L  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62424" stop="62699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSDLSLEVSYDLQLALLLQASAEMFSKRHYERATELLSLCNLSASPTGTPDQRVVYCYSEALRERINKETKSITGLQLDRLVDFEVKTNWR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62329" stop="62535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWKYLKWHKHKYLTTRRRKRMILPLLLNPLIDIVICLLKFHMICSSLFYFKLLLKCFPRDTMNVQRSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62683" stop="62877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPIGVEEISLCTKPHVIACYHALPFYQVAQFACIEAILNNFKSERRLHLIGFGIRSGAHWIILMQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="63089" PGL_stop="63854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63089" e_stop="63854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="63089" e_stop="63854" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63089" stop="63854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTACTCAGAGTATGTTCTTGGAGGCATGTTAACATGGCCTAATCACCTTGAAGTTGTTCTAAGATTCATTGAAAGCCTCAATACTTGTGTGATAATAGTCATCGAAACTGAGGCAAACATTAACGAGCCAATATTTATGGATCAATTTAATGAATCAGTGTTTCTGTATGCTACACTCTTTGATTGTTTGGAGACATTCATGGGCCGAGACAATCAGCACAGGATGGAATTTGAAAGACTGGTTCTTAGAAAAATCATTCACAATGTGATCACTTGTGAAGGAGAAGGAAGGATCTTCCACAACGTCAGGCTGGAAGTATGGAGGGCTTTGTTTGAAAATTTTGGTATTAAGGAAACAGAATTGAGTGAATTATCCTTGTACCAAGCAAATCTAATAGTCGATCGATCTGCTCATGGCTTTTGCACTCTGGATATGGATGGAAATTGCCTTACTATTAAATGGAAAGGAACTCCAATAGTATTTGCTTCAGCCTGGAAGTTTGTCCATGATTGATAGATGCCGTCTTGGGGGGATATTGGAGGTGTCATGAAGCCTATTAGTACAGAACCCAAATAAGCATATGAAATAAATCATCTAGTAGTAATGAGGACCCTTTGATGGACTAAGATTGAAGAAACCTCCAAAATCCCATTGCTAATTTGTCTGTATTAAGTTGGAAAGATCGCATTCGGTGGGTCTGCAAGAGTTGTATCTTGTTCATAAGTATTTATTCGTTTGTTACATTTTGTTCATTAATTTTACA</gDNA_template>
            <first_frame> V  Y  S  E  Y  V  L  G  G  M  L  T  W  P  N  H  L  E  V  V  L  R  F  I  E  S  L  N  T  C  V  I  I  V  I  E  T  E  A  N  I  N  E  P  I  F  M  D  Q  F  N  E  S  V  F  L  Y  A  T  L  F  D  C  L  E  T  F  M  G  R  D  N  Q  H  R  M  E  F  E  R  L  V  L  R  K  I  I  H  N  V  I  T  C  E  G  E  G  R  I  F  H  N  V  R  L  E  V  W  R  A  L  F  E  N  F  G  I  K  E  T  E  L  S  E  L  S  L  Y  Q  A  N  L  I  V  D  R  S  A  H  G  F  C  T  L  D  M  D  G  N  C  L  T  I  K  W  K  G  T  P  I  V  F  A  S  A  W  K  F  V  H  D  *  *  M  P  S  W  G  D  I  G  G  V  M  K  P  I  S  T  E  P  K  *  A  Y  E  I  N  H  L  V  V  M  R  T  L  *  W  T  K  I  E  E  T  S  K  I  P  L  L  I  C  L  Y  *  V  G  K  I  A  F  G  G  S  A  R  V  V  S  C  S  *  V  F  I  R  L  L  H  F  V  H  *  F  Y  </first_frame>
            <second_frame>  F  T  Q  S  M  F  L  E  A  C  *  H  G  L  I  T  L  K  L  F  *  D  S  L  K  A  S  I  L  V  *  *  *  S  S  K  L  R  Q  T  L  T  S  Q  Y  L  W  I  N  L  M  N  Q  C  F  C  M  L  H  S  L  I  V  W  R  H  S  W  A  E  T  I  S  T  G  W  N  L  K  D  W  F  L  E  K  S  F  T  M  *  S  L  V  K  E  K  E  G  S  S  T  T  S  G  W  K  Y  G  G  L  C  L  K  I  L  V  L  R  K  Q  N  *  V  N  Y  P  C  T  K  Q  I  *  *  S  I  D  L  L  M  A  F  A  L  W  I  W  M  E  I  A  L  L  L  N  G  K  E  L  Q  *  Y  L  L  Q  P  G  S  L  S  M  I  D  R  C  R  L  G  G  I  L  E  V  S  *  S  L  L  V  Q  N  P  N  K  H  M  K  *  I  I  *  *  *  *  G  P  F  D  G  L  R  L  K  K  P  P  K  S  H  C  *  F  V  C  I  K  L  E  R  S  H  S  V  G  L  Q  E  L  Y  L  V  H  K  Y  L  F  V  C  Y  I  L  F  I  N  F  T </second_frame>
            <third_frame>   L  L  R  V  C  S  W  R  H  V  N  M  A  *  S  P  *  S  C  S  K  I  H  *  K  P  Q  Y  L  C  D  N  S  H  R  N  *  G  K  H  *  R  A  N  I  Y  G  S  I  *  *  I  S  V  S  V  C  Y  T  L  *  L  F  G  D  I  H  G  P  R  Q  S  A  Q  D  G  I  *  K  T  G  S  *  K  N  H  S  Q  C  D  H  L  *  R  R  R  K  D  L  P  Q  R  Q  A  G  S  M  E  G  F  V  *  K  F  W  Y  *  G  N  R  I  E  *  I  I  L  V  P  S  K  S  N  S  R  S  I  C  S  W  L  L  H  S  G  Y  G  W  K  L  P  Y  Y  *  M  E  R  N  S  N  S  I  C  F  S  L  E  V  C  P  *  L  I  D  A  V  L  G  G  Y  W  R  C  H  E  A  Y  *  Y  R  T  Q  I  S  I  *  N  K  S  S  S  S  N  E  D  P  L  M  D  *  D  *  R  N  L  Q  N  P  I  A  N  L  S  V  L  S  W  K  D  R  I  R  W  V  C  K  S  C  I  L  F  I  S  I  Y  S  F  V  T  F  C  S  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63089" stop="63604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYSEYVLGGMLTWPNHLEVVLRFIESLNTCVIIVIETEANINEPIFMDQFNESVFLYATLFDCLETFMGRDNQHRMEFERLVLRKIIHNVITCEGEGRIFHNVRLEVWRALFENFGIKETELSELSLYQANLIVDRSAHGFCTLDMDGNCLTIKWKGTPIVFASAWKFVHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="67917" PGL_stop="71758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67917" e_stop="67934"/>
            <exon e_start="68101" e_stop="68230"/>
            <exon e_start="71434" e_stop="71758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.611"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.931"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.611">
            <gDNA_exon_boundary e_start="67917" e_stop="67934" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67935" i_stop="68100" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="68101" e_stop="68230" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68231" i_stop="71433" i_length="3203"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="71434" e_stop="71758" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67917" stop="67934"/>
              <exon start="68101" stop="68230"/>
              <exon start="71434" stop="71758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284128" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATCCACCTTTCCTGA : TTGGGAAAACACGGACAAGCACAAAAGTATATATGGTTAATGTAATGGAAATAAAATGAGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAATCACGGGCCAAGAGGA : GCCATAATGTTGAAGAGCTATCGCTCTCAACCGCATTCACCATATCAACACAAGCAGAGGCCGTAGTCCAGTATAGACCACGACGTTTGTTACCACGAGCCACAACCAAGGAACCCTTAATGAGCTTCCATTTTCCATCACCGTTGGTACTAATATATCCTTCATCATCTAAAATACCAACAGAAATTAGGTGCAGACGAACATCACGAGTATGTTTCACATTGTTCAAAACTAGTTTAGTTCCAACACTAGTTTCCAAACAAATTGTACCAATACCAACCACCCTAGAAACAGTCTCATTACCCATACTCAAGGTTCCAAAATC</gDNA_template>
            <first_frame> Q  I  H  L  S  *  :  L  G  K  H  G  Q  A  Q  K  Y  I  W  L  M  *  W  K  *  N  E  K  I  T  T  P  R  I  L  R  G  N  P  S  E  *  G  K  K  S  R  A  K  R   : S  H  N  V  E  E  L  S  L  S  T  A  F  T  I  S  T  Q  A  E  A  V  V  Q  Y  R  P  R  R  L  L  P  R  A  T  T  K  E  P  L  M  S  F  H  F  P  S  P  L  V  L  I  Y  P  S  S  S  K  I  P  T  E  I  R  C  R  R  T  S  R  V  C  F  T  L  F  K  T  S  L  V  P  T  L  V  S  K  Q  I  V  P  I  P  T  T  L  E  T  V  S  L  P  I  L  K  V  P  K   </first_frame>
            <second_frame>  K  S  T  F  P  D :   W  E  N  T  D  K  H  K  S  I  Y  G  *  C  N  G  N  K  M  R  K  *  R  H  Q  E  F  Y  V  E  T  L  L  N  K  G  K  N  H  G  P  R  G  :  A  I  M  L  K  S  Y  R  S  Q  P  H  S  P  Y  Q  H  K  Q  R  P  *  S  S  I  D  H  D  V  C  Y  H  E  P  Q  P  R  N  P  *  *  A  S  I  F  H  H  R  W  Y  *  Y  I  L  H  H  L  K  Y  Q  Q  K  L  G  A  D  E  H  H  E  Y  V  S  H  C  S  K  L  V  *  F  Q  H  *  F  P  N  K  L  Y  Q  Y  Q  P  P  *  K  Q  S  H  Y  P  Y  S  R  F  Q  N  </second_frame>
            <third_frame>   N  P  P  F  L   : I  G  K  T  R  T  S  T  K  V  Y  M  V  N  V  M  E  I  K  *  E  N  N  D  T  K  N  F  T  W  K  P  F  *  I  R  E  K  I  T  G  Q  E  E :   P  *  C  *  R  A  I  A  L  N  R  I  H  H  I  N  T  S  R  G  R  S  P  V  *  T  T  T  F  V  T  T  S  H  N  Q  G  T  L  N  E  L  P  F  S  I  T  V  G  T  N  I  S  F  I  I  *  N  T  N  R  N  *  V  Q  T  N  I  T  S  M  F  H  I  V  Q  N  *  F  S  S  N  T  S  F  Q  T  N  C  T  N  T  N  H  P  R  N  S  L  I  T  H  T  Q  G  S  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68206" stop="68230"/>
                    <exon start="71434" stop="71756"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKSRAKRSHNVEELSLSTAFTISTQAEAVVQYRPRRLLPRATTKEPLMSFHFPSPLVLIYPSSSKIPTEIRCRRTSRVCFTLFKTSLVPTLVSKQIVPIPTTLETVSLPILKVPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="68431" PGL_stop="68225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68431" e_stop="68225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="68431" e_stop="68225" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68431" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGAATATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCTATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTCGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  R  Y  S  I  E  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  R  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  G  I  P  *  N  I  *  E  N  S  L  *  R  K  I  E  C  E  L  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  H  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  V  I  S  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  H  R  I  Y  K  K  I  V  C  E  E  K  *  S  V  S  Y  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0126F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="95293" PGL_stop="95802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95293" e_stop="95802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95293" e_stop="95802" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95293" stop="95802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATCATGGCTACCTCACAAATAGCTATTATTGTGCTTCTAGGATTACTTGTCGCCACCAACATTCACATAACAGGTTTCTACTTAAACATTTTGAATTTTCGACATCAAAAATAATATTATTGATAGTTTTTTTTTACCGTATACTCTTAATTGTGTATCTTTTCCCACACTAACTTGCATGACTATATTCATTTTACCCAAAGTTACTTGACATTTTTCGGTTTTAGCACTCACAAACTTTTTTAATTTGAGGGTGGTCAGCAGAGGTGAATCCAAAATTTAAATCGAAGTCAAAATCTAATATTTATATATTTTCTTCGTTTCAAAAATAATGTCTTTTTTTTTTAGTTTGTTTAAAAAAAAGGACCCCTTTCTTTATTTGACAACAATTTAACTTTAACTTTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> T  S  W  L  P  H  K  *  L  L  L  C  F  *  D  Y  L  S  P  P  T  F  T  *  Q  V  S  T  *  T  F  *  I  F  D  I  K  N  N  I  I  D  S  F  F  L  P  Y  T  L  N  C  V  S  F  P  T  L  T  C  M  T  I  F  I  L  P  K  V  T  *  H  F  S  V  L  A  L  T  N  F  F  N  L  R  V  V  S  R  G  E  S  K  I  *  I  E  V  K  I  *  Y  L  Y  I  F  F  V  S  K  I  M  S  F  F  F  S  L  F  K  K  K  D  P  F  L  Y  L  T  T  I  *  L  *  L  S  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  H  H  G  Y  L  T  N  S  Y  Y  C  A  S  R  I  T  C  R  H  Q  H  S  H  N  R  F  L  L  K  H  F  E  F  S  T  S  K  I  I  L  L  I  V  F  F  Y  R  I  L  L  I  V  Y  L  F  P  H  *  L  A  *  L  Y  S  F  Y  P  K  L  L  D  I  F  R  F  *  H  S  Q  T  F  L  I  *  G  W  S  A  E  V  N  P  K  F  K  S  K  S  K  S  N  I  Y  I  F  S  S  F  Q  K  *  C  L  F  F  L  V  C  L  K  K  R  T  P  F  F  I  *  Q  Q  F  N  F  N  F  P  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  M  A  T  S  Q  I  A  I  I  V  L  L  G  L  L  V  A  T  N  I  H  I  T  G  F  Y  L  N  I  L  N  F  R  H  Q  K  *  Y  Y  *  *  F  F  F  T  V  Y  S  *  L  C  I  F  S  H  T  N  L  H  D  Y  I  H  F  T  Q  S  Y  L  T  F  F  G  F  S  T  H  K  L  F  *  F  E  G  G  Q  Q  R  *  I  Q  N  L  N  R  S  Q  N  L  I  F  I  Y  F  L  R  F  K  N  N  V  F  F  F  *  F  V  *  K  K  G  P  L  S  L  F  D  N  N  L  T  L  T  F  H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0126F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="98511" PGL_stop="97924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98511" e_stop="97924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="98511" e_stop="97924" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98511" stop="97924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAGAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAAAATTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATAATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAGATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATCCATCCGAGAGCGGCGAAAATGTATCATGATTTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTACCAGCAGGTCATGTGTGAGCACCAGCGGCCTGGTGGTGTATCTCAAAGGATGCCTATTCCTACTTGGAAGTAGGAGTGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  R  G  R  P  M  L  W  P  M  L  *  V  G  R  L  I  A  W  G  V  L  H  L  L  V  L  R  R  D  H  W  L  E  M  F  N  C  *  L  K  F  L  S  D  Y  R  S  Q  R  R  V  M  G  *  L  L  L  L  R  L  D  L  L  *  S  S  R  F  V  H  T  S  L  M  M  K  N  Y  V  S  F  E  T  K  Y  *  E  G  K  L  R  R  L  S  L  I  L  M  V  S  *  G  S  E  A  G  F  V  C  P  R  Q  A  I  *  L  D  *  S  L  R  R  P  I  V  L  D  I  L  S  I  R  E  R  R  K  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  L  Q  T  L  F  *  G  V  *  L  T  S  R  S  C  V  S  T  S  G  L  V  V  Y  L  K  G  C  L  F  L  L  G  S  R  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  G  E  G  Q  C  C  G  R  C  F  E  *  E  D  S  *  H  G  E  S  C  I  S  *  C  *  G  E  T  I  G  *  R  C  S  I  V  S  *  N  S  C  P  I  T  D  L  R  G  E  *  W  D  N  C  F  Y  *  G  S  I  F  F  S  R  A  D  S  C  T  P  V  *  *  *  K  I  M  S  H  S  R  Q  S  I  E  R  G  S  *  G  G  C  P  *  F  *  W  C  L  E  D  R  R  Q  D  L  C  A  Q  D  R  R  F  D  *  I  D  P  *  G  G  P  L  F  S  I  F  Y  P  S  E  S  G  E  N  V  S  *  F  E  S  A  L  L  V  V  W  D  E  E  R  Y  Y  R  L  C  F  E  V  F  D  L  P  A  G  H  V  *  A  P  A  A  W  W  C  I  S  K  D  A  Y  S  Y  L  E  V  G  V  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  H  S  M  G  S  L  A  S  L  S  V  E  E  R  P  L  A  R  D  V  Q  L  L  A  K  I  L  V  R  L  Q  I  S  E  E  S  D  G  I  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  R  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  R  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  T  D  F  V  L  R  C  L  T  Y  Q  Q  V  M  C  E  H  Q  R  P  G  G  V  S  Q  R  M  P  I  P  T  W  K  *  E  W  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98509" stop="97937"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTHSMGSLASLSVEERPLARDVQLLAKILVRLQISEESDGIIAFIEARSSLVEQIRAHQFDDEKLCLIRDKVLRGEAKEAVLDSDGVLRIGGRICVPKTGDLIRLILEEAHCSRYSIHPRAAKMYHDLSQHYWWCGMKRDITDFVLRCLTYQQVMCEHQRPGGVSQRMPIPTWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100362" PGL_stop="101066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100362" e_stop="101066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="100362" e_stop="101066" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100362" stop="100878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100640" stop="101066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGGTACATCTACCTCCACTCTGCTGAGCTGCAACACCACTACTAGAAACTCTATCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGTGCTGGTGGTCTAGTCTGGAATGAAGAATTAGGTCAAGTCCCACCACGACCCCGTTGTGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATTTCTGACCTGGGAACTGTTGTGTGGACCCTGAAAATCCACTATAATTTCCTCGCCCTGTAGGTCGCTGCTATGAACCGTACGAGCCCTAACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCCGCCTCTTTGGCGGCGCTCATAATAGACTGGAAAGAAGTCCCCTCCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAA</gDNA_template>
            <first_frame> G  G  T  S  T  S  T  L  L  S  C  N  T  T  T  R  N  S  I  T  S  T  *  L  N  S  A  T  T  S  T  L  W  C  W  W  S  S  L  E  *  R  I  R  S  S  P  T  T  T  P  L  *  S  T  L  P  H  *  M  I  G  I  S  T  S  K  T  K  F  L  T  W  E  L  L  C  G  P  *  K  S  T  I  I  S  S  P  C  R  S  L  L  *  T  V  R  A  L  T  W  A  I  R  T  P  R  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  L  K  L  T  *  Y  T  S  S  F  R  V  P  K  L  L  S  L  H  Q  F  R  L  F  G  G  A  H  N  R  L  E  R  S  P  L  P  R  C  P  K  H  S  *  P  D  R  E  S  Q  S  P  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I  L  C  N  R  *  T  I  L  S  Q  T  L  K  P  Q </first_frame>
            <second_frame>  V  V  H  L  P  P  L  C  *  A  A  T  P  L  L  E  T  L  S  P  L  P  D  *  T  L  P  R  P  L  P  C  G  A  G  G  L  V  W  N  E  E  L  G  Q  V  P  P  R  P  R  C  E  V  H  C  R  I  R  *  S  G  S  P  Q  V  K  Q  N  F  *  P  G  N  C  C  V  D  P  E  N  P  L  *  F  P  R  P  V  G  R  C  Y  E  P  Y  E  P  *  P  G  P  *  E  P  L  D  V  W  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  P  L  P  P  D  E  A  P  *  N  *  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  S  L  A  A  L  I  I  D  W  K  E  V  P  S  L  D  V  R  N  T  A  D  L  I  E  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  C  L  D  N  W  Q  K  R  A  S  Y  S  V  T  D  K  P  S  C  L  R  L  S  N  L   </second_frame>
            <third_frame>   W  Y  I  Y  L  H  S  A  E  L  Q  H  H  Y  *  K  L  Y  H  L  Y  L  T  E  L  C  H  D  L  Y  P  V  V  L  V  V  *  S  G  M  K  N  *  V  K  S  H  H  D  P  V  V  K  Y  T  A  A  L  D  D  R  D  L  H  K  *  N  K  I  S  D  L  G  T  V  V  W  T  L  K  I  H  Y  N  F  L  A  L  *  V  A  A  M  N  R  T  S  P  N  L  G  H  K  N  P  *  M  S  G  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  S  V  I  P  Y  L  Q  M  R  H  P  E  T  D  L  I  Y  E  L  F  *  G  P  Q  T  P  L  S  P  S  I  P  P  L  W  R  R  S  *  *  T  G  K  K  S  P  P  *  M  S  E  T  Q  L  T  *  *  R  K  S  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  P  T  H  A  *  T  T  G  K  N  A  P  H  T  L  *  P  I  N  H  P  V  S  D  S  Q  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100795" stop="101064"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDIRALLGSPNSSLSINSASLAALIIDWKEVPSLDVRNTADLIEKVNPLTNLRILSVSFGIMANACLDNWQKRASYSVTDKPSCLRLSNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="101487" PGL_stop="101789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101487" e_stop="101789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="101487" e_stop="101789" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101487" stop="101789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTCTGAGCCCCCTCTCTAGTACGGGAGTCATGTGGTGTAGTAGTCGCACCACCACCTTGAGAAAAGCCTTCAAGCACACTTAACACCCTCAATAGTGTATCCTGAAGCAAAGGTATGACTACAGGATCTGGAGGAACCTGGTCCTTCCTGCCATCAATCTGAGGTTCTGTAGAGACCTCTCTAGCACGACCTCTCACTGGAGCTGCTCTACGTCCATGACCTCTGGCTACTGTCATACTACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACAACTGC</gDNA_template>
            <first_frame> L  G  L  S  P  L  S  S  T  G  V  M  W  C  S  S  R  T  T  T  L  R  K  A  F  K  H  T  *  H  P  Q  *  C  I  L  K  Q  R  Y  D  Y  R  I  W  R  N  L  V  L  P  A  I  N  L  R  F  C  R  D  L  S  S  T  T  S  H  W  S  C  S  T  S  M  T  S  G  Y  C  H  T  T  S  T  T  S  S  S  R  S  T  P  T  P  S  W  G  L  N  N  C </first_frame>
            <second_frame>  W  V  *  A  P  S  L  V  R  E  S  C  G  V  V  V  A  P  P  P  *  E  K  P  S  S  T  L  N  T  L  N  S  V  S  *  S  K  G  M  T  T  G  S  G  G  T  W  S  F  L  P  S  I  *  G  S  V  E  T  S  L  A  R  P  L  T  G  A  A  L  R  P  *  P  L  A  T  V  I  L  L  A  R  P  L  A  R  D  L  P  L  P  L  A  G  A  S  T  T   </second_frame>
            <third_frame>   G  S  E  P  P  L  *  Y  G  S  H  V  V  *  *  S  H  H  H  L  E  K  S  L  Q  A  H  L  T  P  S  I  V  Y  P  E  A  K  V  *  L  Q  D  L  E  E  P  G  P  S  C  H  Q  S  E  V  L  *  R  P  L  *  H  D  L  S  L  E  L  L  Y  V  H  D  L  W  L  L  S  Y  Y  *  H  D  L  *  L  E  I  Y  P  Y  P  *  L  G  P  Q  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101586" stop="101789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILKQRYDYRIWRNLVLPAINLRFCRDLSSTTSHWSCSTSMTSGYCHTTSTTSSSRSTPTPSWGLNNC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="118391" PGL_stop="120268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118391" e_stop="118512"/>
            <exon e_start="119179" e_stop="120268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118391" e_stop="118512" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118513" i_stop="119178" i_length="666"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="119179" e_stop="120268" e_length="1090"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118391" stop="118512"/>
              <exon start="119179" stop="119858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118396" stop="118512"/>
              <exon start="119179" stop="119662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118399" stop="118512"/>
              <exon start="119179" stop="119662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118462" stop="118512"/>
              <exon start="119179" stop="119662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118463" stop="118512"/>
              <exon start="119179" stop="119717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118493" stop="118512"/>
              <exon start="119179" stop="119825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119179" stop="119671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119179" stop="119604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119194" stop="119674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119398" stop="120250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119501" stop="120268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTTCTTTCTGCTGCTGCTTCTTTAAAATACGGTGCTTCTCCCCATCAAAAGTATACATCGCCTTCGCCTTCACCAGATTTGTTTGGTTCGTCTCTTTCATCTCTTGCCACTTATTTAT : GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGATTCAGAGGAAGAGAGGAGGAGGAAGAGGAAGAACAAGAAGAAGAAGAAGCAGAAGAAGAGGAGACACCGGAAATACAGCTCAACATCTGAGTCCTCTGATTCATACTCAGATTCCGAGTCTGATTCTGAAGGGAGGACTAGCCGTAAGAAGAGCAGCAAGAGGCATAACAAAAAGCGGTGAAGCATTGGACAAGATGAGAACTCCATATGTGGTACCTGGTTCTTAAAACTTGAAAATATTCATATTTATGTTTGTGATAAAAGATCTTTTGAGCGATGCACTTAAGATAACTGGGATTTTCCTGTCTCAAAGGTTTTGTAGATTGTCATAAGCTTATGTTGTGGCTGTAGAATTCAATGTGGCGAGAGTTGTCTCTTGTATTGAATTTTTTCATGTGCTAGCTTGCTCAT</gDNA_template>
            <first_frame> L  S  S  F  C  C  C  F  F  K  I  R  C  F  S  P  S  K  V  Y  I  A  F  A  F  T  R  F  V  W  F  V  S  F  I  S  C  H  L  F  M :   V  L  V  *  I  N  I  N  S  K  R  G  L  L  F  V  E  S  Q  D  Y  G  I  L  *  E  *  R  K  W  C  S  G  C  S  R  K  D  *  G  S  G  L  V  S  C  K  R  F  E  S  G  S  G  *  A  C  C  Y  C  C  C  E  K  C  Q  C  I  W  T  K  G  G  R  T  Q  S  M  A  G  K  K  R  S  K  E  A  D  V  F  N  E  Y  *  E  T  G  A  T  G  *  K  E  R  Q  A  F  R  F  H  S  W  C  S  F  T  M  S  E  M  F  P  G  R  A  L  D  L  *  V  Q  E  *  E  G  V  H  I  T  T  I  S  H  A  A  A  E  K  S  K  V  E  D  E  S  F  S  I  L  *  S  R  K  P  R  Y  *  E  G  D  E  E  *  K  T  C  E  E  E  *  E  E  A  *  V  R  Y  R  V  R  D  *  *  *  G  F  C  V  *  I  W  Q  *  G  V  I  S  H  R  V  R  L  F  F  W  G  K  *  L  K  R  *  F  F  N  *  F  R  G  R  E  E  E  E  E  E  E  Q  E  E  E  E  A  E  E  E  E  T  P  E  I  Q  L  N  I  *  V  L  *  F  I  L  R  F  R  V  *  F  *  R  E  D  *  P  *  E  E  Q  Q  E  A  *  Q  K  A  V  K  H  W  T  R  *  E  L  H  M  W  Y  L  V  L  K  T  *  K  Y  S  Y  L  C  L  *  *  K  I  F  *  A  M  H  L  R  *  L  G  F  S  C  L  K  G  F  V  D  C  H  K  L  M  L  W  L  *  N  S  M  W  R  E  L  S  L  V  L  N  F  F  M  C  *  L  A  H </first_frame>
            <second_frame>  S  L  L  S  A  A  A  S  L  K  Y  G  A  S  P  H  Q  K  Y  T  S  P  S  P  S  P  D  L  F  G  S  S  L  S  S  L  A  T  Y  L   : W  C  W  Y  R  L  T  *  T  Q  R  G  D  F  S  L  L  R  A  K  I  M  A  S  S  K  N  E  E  S  G  A  Q  D  A  A  E  R  I  K  A  Q  A  L  S  A  A  K  G  L  S  R  A  Q  A  E  R  A  A  T  A  A  A  R  N  V  N  A  Y  G  Q  K  E  E  G  P  S  R  W  Q  E  R  K  E  A  K  R  Q  M  Y  L  M  S  T  E  K  Q  V  R  L  G  E  R  K  D  K  P  S  G  S  T  L  G  A  A  S  Q  C  Q  K  C  F  Q  A  G  H  W  T  Y  E  C  K  N  E  R  V  Y  I  S  R  P  S  R  T  Q  Q  L  K  N  P  K  L  R  M  K  V  S  A  S  Y  D  L  E  N  P  D  I  E  K  E  M  K  S  E  K  P  V  K  K  S  K  R  K  H  K  S  D  T  E  S  G  T  D  S  E  A  S  V  F  E  S  G  S  E  A  S  S  V  T  G  S  D  Y  S  S  G  E  S  D  S  S  D  S  S  S  T  D  S  E  E  E  R  R  R  K  R  K  N  K  K  K  K  K  Q  K  K  R  R  H  R  K  Y  S  S  T  S  E  S  S  D  S  Y  S  D  S  E  S  D  S  E  G  R  T  S  R  K  K  S  S  K  R  H  N  K  K  R  *  S  I  G  Q  D  E  N  S  I  C  G  T  W  F  L  K  L  E  N  I  H  I  Y  V  C  D  K  R  S  F  E  R  C  T  *  D  N  W  D  F  P  V  S  K  V  L  *  I  V  I  S  L  C  C  G  C  R  I  Q  C  G  E  S  C  L  L  Y  *  I  F  S  C  A  S  L  L   </second_frame>
            <third_frame>   L  F  F  L  L  L  L  L  *  N  T  V  L  L  P  I  K  S  I  H  R  L  R  L  H  Q  I  C  L  V  R  L  F  H  L  L  P  L  I  Y  :  G  A  G  I  D  *  H  K  L  K  E  G  T  S  L  C  *  E  P  R  L  W  H  P  L  R  M  K  K  V  V  L  R  M  Q  Q  K  G  L  R  L  R  P  C  Q  L  Q  K  V  *  V  G  L  R  L  S  V  L  L  L  L  L  R  E  M  S  M  H  M  D  K  R  R  K  D  P  V  D  G  R  K  E  K  K  Q  R  G  R  C  I  *  *  V  L  R  N  R  C  D  W  V  K  G  K  T  S  L  Q  V  P  L  L  V  Q  L  H  N  V  R  N  V  S  R  Q  G  I  G  L  M  S  A  R  M  R  G  C  T  Y  H  D  H  L  A  R  S  S  *  K  I  Q  S  *  G  *  K  F  Q  H  L  M  I  *  K  T  Q  I  L  R  R  R  *  R  V  K  N  L  *  R  R  V  R  G  S  I  S  Q  I  Q  S  Q  G  L  I  V  R  L  L  C  L  N  L  A  V  R  R  H  Q  S  Q  G  Q  I  I  L  L  G  K  V  T  Q  A  I  V  L  Q  L  I  Q  R  K  R  G  G  G  R  G  R  T  R  R  R  R  S  R  R  R  G  D  T  G  N  T  A  Q  H  L  S  P  L  I  H  T  Q  I  P  S  L  I  L  K  G  G  L  A  V  R  R  A  A  R  G  I  T  K  S  G  E  A  L  D  K  M  R  T  P  Y  V  V  P  G  S  *  N  L  K  I  F  I  F  M  F  V  I  K  D  L  L  S  D  A  L  K  I  T  G  I  F  L  S  Q  R  F  C  R  L  S  *  A  Y  V  V  A  V  E  F  N  V  A  R  V  V  S  C  I  E  F  F  H  V  L  A  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119202" stop="120038"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQRGDFSLLRAKIMASSKNEESGAQDAAERIKAQALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKQVRLGERKDKPSGSTLGAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRMKVSASYDLENPDIEKEMKSEKPVKKSKRKHKSDTESGTDSEASVFESGSEASSVTGSDYSSGESDSSDSSSTDSEEERRRKRKNKKKKKQKKRRHRKYSSTSESSDSYSDSESDSEGRTSRKKSSKRHNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="118452" e_stop="118479"/>
            <exon e_start="119179" e_stop="120268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118452" e_stop="118479" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118480" i_stop="119178" i_length="699"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="119179" e_stop="120268" e_length="1090"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118452" stop="118479"/>
              <exon start="119179" stop="119591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119179" stop="119671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119179" stop="119604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119194" stop="119674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119398" stop="120250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119501" stop="120268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCCTTCGCCTTCACCAGATTTGTTTG : GGTGCTGGTATAGATTAACATAAACTCAAAGAGGGGACTTCTCTTTGTTGAGAGCCAAGATTATGGCATCCTCTAAGAATGAAGAAAGTGGTGCTCAGGATGCAGCAGAAAGGATTAAGGCTCAGGCCTTGTCAGCTGCAAAAGGTTTGAGTCGGGCTCAGGCTGAGCGTGCTGCTACTGCTGCTGCGAGAAATGTCAATGCATATGGACAAAAGGAGGAAGGACCCAGTCGATGGCAGGAAAGAAAAGAAGCAAAGAGGCAGATGTATTTAATGAGTACTGAGAAACAGGTGCGACTGGGTGAAAGGAAAGACAAGCCTTCAGGTTCCACTCTTGGTGCAGCTTCACAATGTCAGAAATGTTTCCAGGCAGGGCATTGGACTTATGAGTGCAAGAATGAGAGGGTGTACATATCACGACCATCTCGCACGCAGCAGCTGAAAAATCCAAAGTTGAGGATGAAAGTTTCAGCATCTTATGATCTAGAAAACCCAGATATTGAGAAGGAGATGAAGAGTGAAAAACCTGTGAAGAAGAGTAAGAGGAAGCATAAGTCAGATACAGAGTCAGGGACTGATAGTGAGGCTTCTGTGTTTGAATCTGGCAGTGAGGCGTCATCAGTCACAGGGTCAGATTATTCTTCTGGGGAAAGTGACTCAAGCGATAGTTCTTCAACTGATTCAGAGGAAGAGAGGAGGAGGAAGAGGAAGAACAAGAAGAAGAAGAAGCAGAAGAAGAGGAGACACCGGAAATACAGCTCAACATCTGAGTCCTCTGATTCATACTCAGATTCCGAGTCTGATTCTGAAGGGAGGACTAGCCGTAAGAAGAGCAGCAAGAGGCATAACAAAAAGCGGTGAAGCATTGGACAAGATGAGAACTCCATATGTGGTACCTGGTTCTTAAAACTTGAAAATATTCATATTTATGTTTGTGATAAAAGATCTTTTGAGCGATGCACTTAAGATAACTGGGATTTTCCTGTCTCAAAGGTTTTGTAGATTGTCATAAGCTTATGTTGTGGCTGTAGAATTCAATGTGGCGAGAGTTGTCTCTTGTATTGAATTTTTTCATGTGCTAGCTTGCTCAT</gDNA_template>
            <first_frame> S  P  S  P  S  P  D  L  F   : G  C  W  Y  R  L  T  *  T  Q  R  G  D  F  S  L  L  R  A  K  I  M  A  S  S  K  N  E  E  S  G  A  Q  D  A  A  E  R  I  K  A  Q  A  L  S  A  A  K  G  L  S  R  A  Q  A  E  R  A  A  T  A  A  A  R  N  V  N  A  Y  G  Q  K  E  E  G  P  S  R  W  Q  E  R  K  E  A  K  R  Q  M  Y  L  M  S  T  E  K  Q  V  R  L  G  E  R  K  D  K  P  S  G  S  T  L  G  A  A  S  Q  C  Q  K  C  F  Q  A  G  H  W  T  Y  E  C  K  N  E  R  V  Y  I  S  R  P  S  R  T  Q  Q  L  K  N  P  K  L  R  M  K  V  S  A  S  Y  D  L  E  N  P  D  I  E  K  E  M  K  S  E  K  P  V  K  K  S  K  R  K  H  K  S  D  T  E  S  G  T  D  S  E  A  S  V  F  E  S  G  S  E  A  S  S  V  T  G  S  D  Y  S  S  G  E  S  D  S  S  D  S  S  S  T  D  S  E  E  E  R  R  R  K  R  K  N  K  K  K  K  K  Q  K  K  R  R  H  R  K  Y  S  S  T  S  E  S  S  D  S  Y  S  D  S  E  S  D  S  E  G  R  T  S  R  K  K  S  S  K  R  H  N  K  K  R  *  S  I  G  Q  D  E  N  S  I  C  G  T  W  F  L  K  L  E  N  I  H  I  Y  V  C  D  K  R  S  F  E  R  C  T  *  D  N  W  D  F  P  V  S  K  V  L  *  I  V  I  S  L  C  C  G  C  R  I  Q  C  G  E  S  C  L  L  Y  *  I  F  S  C  A  S  L  L   </first_frame>
            <second_frame>  R  L  R  L  H  Q  I  C  L  :  G  A  G  I  D  *  H  K  L  K  E  G  T  S  L  C  *  E  P  R  L  W  H  P  L  R  M  K  K  V  V  L  R  M  Q  Q  K  G  L  R  L  R  P  C  Q  L  Q  K  V  *  V  G  L  R  L  S  V  L  L  L  L  L  R  E  M  S  M  H  M  D  K  R  R  K  D  P  V  D  G  R  K  E  K  K  Q  R  G  R  C  I  *  *  V  L  R  N  R  C  D  W  V  K  G  K  T  S  L  Q  V  P  L  L  V  Q  L  H  N  V  R  N  V  S  R  Q  G  I  G  L  M  S  A  R  M  R  G  C  T  Y  H  D  H  L  A  R  S  S  *  K  I  Q  S  *  G  *  K  F  Q  H  L  M  I  *  K  T  Q  I  L  R  R  R  *  R  V  K  N  L  *  R  R  V  R  G  S  I  S  Q  I  Q  S  Q  G  L  I  V  R  L  L  C  L  N  L  A  V  R  R  H  Q  S  Q  G  Q  I  I  L  L  G  K  V  T  Q  A  I  V  L  Q  L  I  Q  R  K  R  G  G  G  R  G  R  T  R  R  R  R  S  R  R  R  G  D  T  G  N  T  A  Q  H  L  S  P  L  I  H  T  Q  I  P  S  L  I  L  K  G  G  L  A  V  R  R  A  A  R  G  I  T  K  S  G  E  A  L  D  K  M  R  T  P  Y  V  V  P  G  S  *  N  L  K  I  F  I  F  M  F  V  I  K  D  L  L  S  D  A  L  K  I  T  G  I  F  L  S  Q  R  F  C  R  L  S  *  A  Y  V  V  A  V  E  F  N  V  A  R  V  V  S  C  I  E  F  F  H  V  L  A  C  S  </second_frame>
            <third_frame>   A  F  A  F  T  R  F  V  W :   V  L  V  *  I  N  I  N  S  K  R  G  L  L  F  V  E  S  Q  D  Y  G  I  L  *  E  *  R  K  W  C  S  G  C  S  R  K  D  *  G  S  G  L  V  S  C  K  R  F  E  S  G  S  G  *  A  C  C  Y  C  C  C  E  K  C  Q  C  I  W  T  K  G  G  R  T  Q  S  M  A  G  K  K  R  S  K  E  A  D  V  F  N  E  Y  *  E  T  G  A  T  G  *  K  E  R  Q  A  F  R  F  H  S  W  C  S  F  T  M  S  E  M  F  P  G  R  A  L  D  L  *  V  Q  E  *  E  G  V  H  I  T  T  I  S  H  A  A  A  E  K  S  K  V  E  D  E  S  F  S  I  L  *  S  R  K  P  R  Y  *  E  G  D  E  E  *  K  T  C  E  E  E  *  E  E  A  *  V  R  Y  R  V  R  D  *  *  *  G  F  C  V  *  I  W  Q  *  G  V  I  S  H  R  V  R  L  F  F  W  G  K  *  L  K  R  *  F  F  N  *  F  R  G  R  E  E  E  E  E  E  E  Q  E  E  E  E  A  E  E  E  E  T  P  E  I  Q  L  N  I  *  V  L  *  F  I  L  R  F  R  V  *  F  *  R  E  D  *  P  *  E  E  Q  Q  E  A  *  Q  K  A  V  K  H  W  T  R  *  E  L  H  M  W  Y  L  V  L  K  T  *  K  Y  S  Y  L  C  L  *  *  K  I  F  *  A  M  H  L  R  *  L  G  F  S  C  L  K  G  F  V  D  C  H  K  L  M  L  W  L  *  N  S  M  W  R  E  L  S  L  V  L  N  F  F  M  C  *  L  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0126F09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119202" stop="120038"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQRGDFSLLRAKIMASSKNEESGAQDAAERIKAQALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKQVRLGERKDKPSGSTLGAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRMKVSASYDLENPDIEKEMKSEKPVKKSKRKHKSDTESGTDSEASVFESGSEASSVTGSDYSSGESDSSDSSSTDSEEERRRKRKNKKKKKQKKRRHRKYSSTSESSDSYSDSESDSEGRTSRKKSSKRHNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 658 chains have been computed
$ 
$ memory statistics:
$ 1257704 bytes spliced alignments in total
$ 579 spliced alignments have been stored
$ 2172 bytes was the average size of a spliced alignment
$ 33728 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 2248 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 693 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:40:05
-->
