<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:48:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602116" ref_strand="+" ref_description="SGN-U602116 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="22632" stop="21533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22332" g_stop="21831" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U602116" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22332" e_stop="21831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569127" ref_strand="+" ref_description="SGN-U569127 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157357741|emb|CAO64735.1| (e_value=4e-102) unnamed; (*ATH) AT2G23970.1 (e_value=1e-73) | Symbol: None | defense-related protein, putative, similar to defense-related protein (Brassica carinata) GI:14009290 | chr2:10206778-10208161 FORWARD | Aliases: T29E15.17, T29E15_17; (*SWP) sp|Q12288|YL126_YEAST (e_value=2e-17) Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae GN=YLR126C; ">
      <seq>gcaaaacaaaattgagaaaaatctccatctctctctagacctttctctagagagagaatctatatctatctatatatatatatatatatatatcagtgagtgagaggatttaagaagatttcttcttctttatttctgaaaaatctgtaattaattaataatggaaggaaaaaaatttgcagttctattatgtgcagaggattcagaatacgtgaagaagaaatacgggggttatttcggggttttcgtgagaatgctggcggaggaaggggaaacgtgggactttttccgggtggctcatggcgagtttccgacggatgatgagatcggagaattcgatggatttgtaatcaccggaagttgcaatgacgcgcatggtaatgatttgtggatctgcaagttactcaatctgctcaaaaaaattgattcaatgaagaagaaagttttgggtatttgctttggacaccagatattaggacgatcattgggtggcactatagagagagctactaatggttgggacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcaaattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatcgtcttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatgcattagctttctcaagggtaaattgtgattgcaatttattggaattggtcaaaaagtgtaaataggagatgatatggtgttagatgaacttttagactgttttgggacttttgaacttattagacatccattacatgtcattatcaacaatgttatattaaacttttaactatgaaatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27558" stop="31454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27858" g_stop="28326" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="619" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="787" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="31156" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="1051" r_length="264" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U569127" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>1043</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27858" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="31156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGC----------AATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCCTTATCAACAATCTTATATTAAACTTTTTAACTATTGAAATTGATAACTAAGT</genome_strand>
        <mrna_strand>GCAAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGCAATTTATTGGAATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCATTATCAACAATGTTATATTAAAC-TTTTAACTA-TGAAATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595419" ref_strand="+" ref_description="SGN-U595419 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157357741|emb|CAO64735.1| (e_value=5e-61) unnamed; (*ATH) AT2G23970.1 (e_value=2e-41) | Symbol: None | defense-related protein, putative, similar to defense-related protein (Brassica carinata) GI:14009290 | chr2:10206778-10208161 FORWARD | Aliases: T29E15.17, T29E15_17; ">
      <seq>gcacctttttccggcgtggctccggcgagcttcctactgatgatgagatcggataattcaatggatttgtaatctccggcatgttgcgatgacgcgcatggttacgatttgcgcatctgcacgtcactcgatctgctcaaaaaaattgattgcgtgaagaagaaagttttgggtatttgctttggactccatatatgaagacgatcctcgcgtggcactatagagagagctactaaagatgggcacattggtgtgactactgttaatttatcaacgtcaaagcaattcaactctctcagattacctgcatttttgcaaattatcgagtgtcatcgcgatgagatccgtgaacttccaccaaaggcagaggtaatggcatggtccaacaaaactggaattgaaatgtttagatatggtgatcatataatgggcattcaaggtcaccctgaatacaccaaagacattcttctccatctcatcgatcgtcttcttcaacacaaccttattgaggagagcatggctgatgtggccaaggcaaaggttgaagagtgtgaaccagacagggagcaatggaagaaattatgcattagctttctcaagggtaattgtgattgcaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="27859" stop="31312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28136" g_stop="28326" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30244" g_stop="30393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="342" r_length="150" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30475" g_stop="30642" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="510" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30901" g_stop="31012" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="621" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U595419" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28136" e_stop="28326"/>
          <exon e_start="30244" e_stop="30393"/>
          <exon e_start="30475" e_stop="30642"/>
          <exon e_start="30901" e_stop="31012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTTTTTCCGG-GTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGG-AAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAGGTATTTCTTTTAATTTACTATTTTACTCATCAGCAATTCTATTTTTAATCGTAAGTTCTTTTTATTTATTTTACTAGATTCATTACATGATATGTCTAAAAAAGACACAAAATTTATAAATATCTTATAAACTTTACCTTTGTTACACAAGTAAAAATTATACAAATAAATTGAAATGAAAATGGAAGGAGTATCTTATTTTAAGGCTTCTTTTGAGTGTTGAAATTTGTTGTAAATTCGTTTAATTACAGCTGTCTTTTTTAATTTGCGTCTCTGTTTTTCCGTTCGCTGTCTTTTCCAATTGTCACGAACGCACTTTAAATGCTTTGTTCTTGTACGTTTCATACGTGGCGTATTACTAGCTTTATTCATAAAGTATAACAAAAATAAACTAATTTCACAATATAAGCTAAGAAGGATGGATAAAATAATTTAAAAATTAATTAATAGTTATAATTATATACTAAAATAAAATAAATTCACATTTTACTTCAAAATTATTATTCTTATTCTACTGACCAAGCTACCTAGAAATGCTAGAATCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAATTCAAAAAAATAAAATAAAAATCACTCGTTAAAACTAAAACTAATTAAGCATCTTCTAGGGCAGAGAGTTTCAATGAACTCCACTCCCTCTCTTCAATTATTCGTAATGTTCTCTCTCTGTTTAATTAGTCGTTCTACTTTTCTTTTAGTTCATTTTACGACGAATGTTTTATTTATTTATTTTTTGACAATTTTTAAATTATGGTTGTTTTATACTTGGTTATCATTTCAAGTATAAGTTTTTGTACTTGGATTGGATATCATTCCATACTAAGTCTTATATAAGATCTAAAAAAAGAAATAATATAACCGGTTAAACTGCATTAATAATGACAAAATTCAATAATTTGTAACATTCAAGCTAAGATCCAATGTTTGTTTATGTTATCTAACCTATGATTTGGCAATGAGAAGGATTAGATGAAGAGAGGATTAATAAATAATAATTAAGTAGAAAGATAAGGTTGTGTTGTCGCTGACCTATTACAACCTCCAAATCCAACGATAGAAAATAGTTATTGGAATTTTGCGACTTATTATATGATGCAAATTGTTTTTTTTTTTTTTGTTTTTTTGCTAAATTTTCTTTTATCCTAGATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAGGTTTGTATCAAATTCCTCTCTAGTTGAATACTAGTTTAGTACAAAAATTTTCTAAAAATGTGTAGGTTGTTTTGGAATTAGATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAGGTAAATCTAAGGGCAGAAGTTACAGTTCTGTTTGCAAAATGATTTTCATCTACAACACAATAAGTTGTCTTTTAGACTATTCAAAATCCATGTCATTATATCATATACTTTGTCTAGCTGACCTACTAGTAGGTGTGCCAAATGACATCTTCAACAGTGAGTGTGCCACATGTTTAGAATGTGTGCTATGATTGATTGATATTATTAAAAATTTCATGTGAAATATGTCAGTTATAAAGCTTGACTTTTTTGTTGTAGGAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGCAATTGG</genome_strand>
        <mrna_strand>GCACCTTTTTCCGGCGTGGCTC-CGGCGAGCTTCCTACTGATGATGAGATCGGATAATTCAATGGATTTGTAATCTCCGGCATGTTGCGATGACGCGCATGGTTACGATTTGCGCATCTGCACGTCACTCGATCTGCTCAAAAAAATTGATTGCGTGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACTCCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGACGATCCTCGCGTGGCACTATAGAGAGAGCTACTAAAGATGGGCACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAGATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG.................................................................................ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG..................................................................................................................................................................................................................................................................GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGT-AATTGTGATTGCAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600542" ref_strand="+" ref_description="SGN-U600542 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tcttacgtacattaatggaaatttcaatttaggtaattgttattttgtaaaactcttttctgtgctatgcgactgtttactagttgggacattactattttatatgaaaatctgctaacatatttggacaaatattattctaatagttgcaatttccgtgttacgaagttatgtcttaattcatctctcccatatgttggaaaaaataaaattttcctttgtttttttttctggcataatacataaatatcattcataacttgttttatctataaaatcgaataaatagataaatttatcctgtgttttacatgtatattataccgtgtaggatatatatgtgtacttattctattttgcacaagtttaagtatttaaatgtcaactaaagtcaagttaaaaaaaatgtatatttgtgtattacttccaatccattttacttgttattatccttaaaaaataaaattaaaatttgggaggattacatgagaggaccctagtggtccaaaagcaaaaagaggtgtgagtgagatttgggaccatatgccaaaaactgagtgagaagttggaactattctgggttagagttagtgaattttggattttggtcccctcacactttcaaattaataattatagacagcccatatattttgggattctatttggatggattcttgtcacgtgttcctctttaatttttcaccagtagtagtagtagccttttgtcatatacttacttcacctaactatgtactatatgantaatgcccgtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="28569" stop="29948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28869" g_stop="29647" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U600542" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28869" e_stop="29647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATG-CCGTCCAAT</genome_strand>
        <mrna_strand>TCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGANTAATGCCCGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582438" ref_strand="+" ref_description="SGN-U582438 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157357757|emb|CAO64751.1| (e_value=2e-84) unnamed; (*ATH) AT3G21175.2 (e_value=3e-62) | Symbol: None | zinc finger (GATA type) family protein, similar to zinc finger protein ZIM gi:8918533 from (Arabidopsis thaliana); contains Pfam PF00320: GATA zinc finger | chr3:7422045-7424895 FORWARD | Aliases: None; (*SWP) sp|Q8GXL7|GAT27_ARATH (e_value=2e-60) GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B; ">
      <seq>agagctaacatgtacggacgggagacgatgaacgctgcacttcaccaagatagacaccagcaaactcagatcgacgacgacgatgatgacgacgtcgtcgctgctgtcggtggcggtggcagtggtgggggaggaatagagtctatggacaaccctactcctcacattcgctacgaccaacatcatcactctcattctcacgcgcttcacaacggcggcgccggcggttctatggagatgaatggtgtggaaggtgtttctcataacgccttgtatggtcctccttccgaaattgttcctactgctggtagtggagcttccgatcagcttacgctgtcgtttcaaggcgaagtgtacgtttttgatgccgtttcacctgaaaaggttcaggcggtgctgttactgttggggggatacgaagtccctcctggtatccctgctgtaaatgtggttccccaaagtcagagggcttcaggtgactttcctggaagattaaatcaaccggaaagagctgcttctttaaatcgttttagggaaaagaggaaagaacggtgttttgataaaaagatccgctatactgtgcggaaggaagttgcgatgaggatgcagcgcaagaaaggtcagtttacatctgccaagtcaatacctgacgaagtaggttcttctgcagattggaatgaaggctctggtcaagaagagcaggaaacatcatgtagacattgcaatattagttcgaaatccactcctatgatgcgtcggggaccagctggcccaaggtctctttgtaatgcatgtggactcaagtgggccaataagggaattttaagagatctttctaaagttccagctcctggaactcaggaccaaactgcgaaacctggtgaacagagccatggtgaacctaatggctcggatgacatggctgctatcatcactccggatgacaacaacccagtggggtgaccgcttgaactgtgagggagaatccttctctgcaattattgtggtggcagttgatgttgaagtgagatgaataattgaaattcatctgttgtactatccgccaaaattagattgtaaatagtaaaatattgtactcttaggcatccgacattgtttctcggagttttagtgttttattctggtgttcaaatgtataattgaaatctgaaacttgtcccacgaatcgatacatgcaggcttaaaagtatctttaaatagtttttgtttgctatatgactacaaaggtggaagagcatactgtctttgcattcttatctctattttataaaaatatacgtaaattttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="55041" stop="62332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55341" g_stop="55724" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56669" g_stop="56752" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="468" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56839" g_stop="56972" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="602" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58891" g_stop="58998" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="710" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59360" g_stop="59465" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="816" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59466" i_stop="61407" i_length="1942">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61408" g_stop="61479" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="888" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61607" g_stop="62032" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="1314" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U582438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55341" e_stop="55724"/>
          <exon e_start="56669" e_stop="56752"/>
          <exon e_start="56839" e_stop="56972"/>
          <exon e_start="58891" e_stop="58998"/>
          <exon e_start="59360" e_stop="59465"/>
          <exon e_start="61408" e_stop="61479"/>
          <exon e_start="61607" e_stop="62032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAGGTATTTCTTTTACTTTGACCTCTCTTTTTGTGCTTACTAAAAATGTTTGCCCTCTAATTTGTGCATCTTGCTCGTTCTTGTGTAGTGTGTTCTTTTATAAGTTTAGCTGAAAAGGTGTTTCTTTTAATTAGCGAGATTGGTCTGCATTTAATTTTTTTGTGTTGCTTGGATTCTTGCTTTTTTTGTGTCTGTCTACAAGAGATTGAGTGACTTAGGGGGAAGGATTTTCAATTTTAGAGATGGGGATAATTCTGTATTTGGCCAAAAGTTCTTGCCTCACTCTCACTCGACTTTTGGAGTTGTTGAGGTATTTCAAGACTCCGAAACTGGTCGTTTCTGAGATTAGATTGTATTTGATTGGCGAATTGGTTAGTGTGTACGGTGAATTGTTTGATATTGATCAAATTATGAAGCAAAGAGGCCATGCTGATCTTTTTTATCTTCCACGAGTAAGAGTGATTCTCACTGGCACGATTTTAGTATCACTGTAATTAAAATCTATGCACCGATGCTGAGTGAGGGGTTATCGCTCATAGGTGAAGTCATGCACTTCATAGAAGTGTTAAAAATGATGCACAGAGTGATCCAAATAAGAAGTCGTTGATGCTCTGAATCTCAACTTAGAAGAGTAAGATTTATGGATACTGAAATTAGTTCGTTTTATTGCAATCTGATCGTTACAGTGCTAAATTCACATACTTAAGAATTTTTTTTGACGTTGAGAATTGTGTGTTTCACTTCAAATGTGTGTGCTGTTTACTTCTCACTTTTCGCTTCAAGCTCCATGGTCCTTATTGCTTTTTTTTGCTCTTTTAGAAAAACTGTTTAGTATATGTATCAGGTAGTGGAATTTGATTCACAATTAGTGGATTTAAAACTTCATTTTGATATTTACAATAATCTTAATAGGGGTAAATTCTGTTTTTATGTTTATTGAGTTTTAGGTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGGGTATTCATCTTTATCTTCCCCTTACATTTTTTTACCAGACTGGTGGTTTATAATCAGTTATGGCACTTCCGCGGCAATATTCACAGGCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAGGTAATAAAACTGTAGTTTTTAATGCATGATGTTGTTTTGTCTGCTTGTTTGAACCATATTCGGAACTAGGTGGAGATAATGTGCAAATTGATGTCTGTTGCGATAGATGTCCCATCTGTAATTGTCCATTCGCTGTGCTAATGATTGATAGGACTAATTCACCCTTCTAAATTAAGTTGACAATAAGAGTAGGAAAGACATTTGCAAATTGTTATACACGAGGGGCGTCTAGCTCTGCGGCAGATGCTTTATATCAGCTTTATGCATTGCTTGAACTATTTGACTGGAATGGTGTAGGAGGTGTTTTGAAGGCAAAAGGAGCATTTATCTTAAAGCAACATTATTTTCAACTGGCTGACCTGCTGGACTTGGCGAATGCTACGAGTCAACTCCAACTTTTTGTAATTTTCTACAGAATTACCTGAAAAAGTAAAAAAGAGTGGAGTATGTCATGACTGAAATATGGCAGGATCACCTGAGGTGCATCTTACTTTATCTTTAAAAAGCAGAGTGCCCCCGAGCTGCACACACTTATTTCATATCTAAGACATTGTTTGAATGTGAATATGTAATTTCTAAATGACCTGACTGCTAAAAAACAGTTGCCGTGAGACAAAATTCTCACTTCCTCTTTACCTTAGGTTTGTGTATAAGAAAAGGTCAACTACAGCATTTTAAGGAATGAGGTAGAACTAACTAAAGAATGCTATAGCGAGGACATTGTAGTGCACTAGGTTGACATTGGAAATATAATAGGATAATTAGTGGTGAAAACATTATCCTATAAGAGGGAAGGGAGGTGTAATAGTATTTAAAGGATGAGACATGACCTCCTACTGAGCGCCTTATATTCTATCAATGCAAATGTCCCATAGTTTTGTGGACTTCGGAGCATTGGTACAACTGGCGCTAAAGTAGTGCACTTCATTATATGAAAACTTGAAATTATTGTCCCCCAATCCTTGCTCTAGTGATAAGAACACAGTCTGTGATGTGGGGGTTAGGCGCACTCCACAAATTTAACCCTACCACAAACAAAAGTGTGGTATTTAAATGGAGAATGGTAAATGCGCAGGCCTCTTTCCACCGAGTTTCAAGCTGTTCGCCTTGGTCTTGGGGATTTCTCAATTATCAAATAGCCCATTGGCATAATATATTAAAACTGAAAAAGCACATAAATACTACTACTAAAAATGGTCTGAGTTACAAAACTGTGGATAAATGACAATAATTAAAGCAAGTACGAGAAGATGTAAGAGCACTCCCATTTCCAATTTAGTGTAGCTGAATTATTATTTTATTCATTTATTAGAAGCCTTTTTTAAAAAAAAAGAAGGGGAAAATGGCCCATTAACTTTTGATGGACAATTTGGTTATTCAACTTTAGAGTTGAGGTCTTTCCACATTTAGTATAAAATATAATAATGATTTTTGCATAATATCGAAGACCACATTATGCAATAGAGCACCAAGACTTGTTTTAGTTCCATTACTTTATTGACTACTGACTATGCCATACCCTCGGGTGCAAGAACGGATATTTTACTAGCTCCTCTCATGTGGCCATGCATCAATCTTCAACTGCGGAATATTTTAATTATAGGCAACTGCTTCCAACCCATGCAAGTGAAACGACTTTTGCTAAAGGATGTCTATAGTGACATCTGACCATGCAATTTGTGCAGGTATCCTTAGATGTTATGCTAGTTCTTTCTCTAGTCAATATGATTTAATTTTATTTTCTCTTACTTCATTCTTCTAGAGGGAGGGGTTATGGGTCCCTGTTAGGTTTTTGAAGTTATTAATTTCAGTCCTTGTCTATATTTTCATCAGTCTTGTAGTTGAAGTTCATGGTTTAGACTAGGTCCTTTTATTTGTTCTTTTCAGTTGTCTCATCTGATCTATGTTATATTTTCAGGATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATCGTGAGTTCCATTTTCTGTAGTAGTTGATTTTCCTTTTTTCAAGTTATAATATGTTTACCACCCCCAAAAATTCCCCTTGACTAGAACAATTAAAAAATTCCCCTTAGGAGCCAACAGTGGCATTTCACACTTTTGTCCCTTAGTCACTCGAACGCCCTGACTTCACGGTTGGAGGTGTAGGACACTAGGCTATACCTCCCTTCTCTGTAGTTGTTCTGTCTTCCGTCATTGAATTTGATGTAAATCTGTGGTCATTTTACAGCAGATTCAATTTTACATGGTCTCGAGGTTCAGAGGTTACCGATCACTTTAAATACAATTGACATCTTTCTGAGAAGTTTCTCTTTCCATTTCTCAACAGATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAGGTTAGTATTGAGTTGAAAATTTTACTCATTTCCATGGTTTTTATTTGAATAGGCATAAATGCCTCGTGATGATTTGCTCCATGATCAATATTACTTATTATTAGTTCCCACCCATTCACATTTTCATTGTTTGAGAACGAGATGTATAAGTAGAGAATTCTAGGGAAAGATATGGTTCGGACGTTCGGTGCAAATAGCATGCATTGATGACTAGGATATCATGTGTGCTCCAATAGTTGAAGAAAAAATATTCTGCTCAAGTATATATACTTTTATCTCCTTCAAATGATTTTTCGCTCTCATTATTGTCCACATTCGCTGATCCATTTTTTAAGCTTCCCCTCAAAACTTCCACTCTATAATACAGAAAAAACTACTCCCTTTGTCCAACAATAGTTGTCCACTATACTAATTTGGGATGTCCAACAATACTTGTCCACTTTATGAAATCAGTGGATTATTTTACACTTCTTTTCTAATTTACCTACTTATAATCATTTCTCTGTGACATTTTTCAACACATTGTATTTATTATATTCAATAGTGAACAAGAATTGTTGGACAGAGGGAGTAAAAAATAGGATGGTTTTGCCTATACCCTGCAACGCCTGCTGAAGTCCGAATATATTCCTCAATTAACAATAAACGCAAATCATACAGTTGTAACAACAAATGTTTGACATGCTTTCCCGTCTTCTTGTACATGAGCGTTTAGTGATATGGATTATTTCCCTTCCTCTCAAATCGATGCTGTTAGAACTGCTCCATATATAGCTTTCCATACAAAGAAATACAGATTTCGACATTTCGTGGTTCAAAAGTGGGAGAAGTCCATATTCTCTCTTATAAGTAGCCTGCTATTAATCTTTATCCAGAAAATATGAGGAGCCTGCTGTTAATCTTTATCCAGAAAACAAAAGGAGCCTGCTATTGATCTTCTTTTTTCAAATCAGTATACAATGTTCTTGAGAGTTATTCTTCTTTCTTTTCTTTTTTTGGTAAAAAGATCTTTGGTTCATTCACCATGGCTTGTAACTGTTGCAATACCTCAAGAACATTATGCACCTTTTATTGCATTTTTCTTTCCAAGTAACTTTGTTTTTTTAAAAAGAAAAAACTTTCTATCTTGTTGTGTGTACAGCTTTCTTTGGCAATTCTACTTGTGTGACTTCCGTCGCAGTATTTGCTTCTCCTGTTCATCATGTGCAGGATAAAGACAAAACACGTTGCTCTTTTGTTTTGGATGATTAACTTCATAATTAACAAGATACATACTTGGCCAGTACCACACTATTAACAGATTCTAACTTTCAATGAAATGCACTCTACATTTTGATACTTATACAAACTTTAATGTTAGCTTTTTAAATAGATTGAAATAAGTATGCGAACTCCTTGGTCATTTCAAAAAATGATCTCAAATGTGACCTTTACTTTGTTCTCTCACAAATCAAGCTTCCGGAGGTTATCATCTTAGAACTGGGTGTTATTAGTTTACAGGTTTTCTGGAGTTGTTATCTCTACCATATTCATTTGTGTTTGAACTCCTACTTGCAACAGTTAAATAATGGAAGTCTATCGGAGCAATGAAATTTTTATCCCAACTTTGTTTTTTTCCCTATTTGAAGTATTTGCACCTAAGATCTACTACCTTTTGGACTTTTTCTTCAATATAATCCTCTGTTAGCTCGCCGGACAGGCCTTTGGTATTGATTAACCTGATATGGGCCCAGTATGTATTTTTCACATTGATGTCTGATAAAGTTCACGACACACTATTCTTTTTGCTTTTGACATCAAATTCTCCTTCACCTTCATTGTTAAGTTCAAAGAAATTTCCGGTCTCGTCATCATTCAACAATCATTTCATTCACTTGCAATTTGTTAAATGGTTTTGGTGAGTGGGAATGCTGCTTTACTCTCCTTTGATCTGTCTCTGCAGGGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAGGTACAAAATCTCCACTTTCTTTTTACCATCATTGGGATAGTTTGTAGAACTTGACAAAAAATAAAAAGGTTGATTTTTTAGTTTATTTACTAAAGCTGATTGTCTGTTATACAATTCTCTCCGGTAGAGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTT</genome_strand>
        <mrna_strand>AGAGCTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG......................................................................................GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC.........................................................................................................................................................................................................................................................................................................................................................................ATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG...............................................................................................................................AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579246" ref_strand="+" ref_description="SGN-U579246 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157357748|emb|CAO64742.1| (e_value=6e-114) unnamed; (*ATH) AT4G33650.1 (e_value=2e-85) | Symbol: None | dynamin-like protein 2a (ADL2a), identical to dynamin like protein 2a (ADL2a) (Arabidopsis thaliana) GI:19032337; supported by cDNA gi:19032336 | chr4:16160938-16166932 FORWARD | Aliases: T16L1.140, T16L1_140; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=2e-84) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A; ">
      <seq>cgccttattgagatggagatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatacttgccagatcagttggtggttttgtccctgatcaggttgttcggcctgctccagaagttgagaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagcccccaagtgtcttgaggccttcagaaactcattcagatcaggaaactattgaaattgccattacaaaactgttattgcggtcatactatgacgttgtcaggaagaatattgaagactcggtacctaaagcaatcatgcattttctggtaaatcacaccaaaagagatcttcacaatgtgttcatcaagaaactctacagagaaaacctcctcgaagaaatgttgcaagaacctgatgagatagccatgaagagaaagcgtacacgtgagacacttcgtgttcttcagcaagctttcaagacattggaggagttaccacttgatgctgagacagttgaaaggggttatagcttgggtactgatctgacaggccttccaaagattcacgggcttccatcatcatcaatgtacactacaagcagtggctcaactggttcacataccagttctccaaagagctctagattgcgcaatgcatcccattcaggtgagctacagttaccaatgtatggtggtgtagattcaaacggtggtgggcataatgctggtatttatccaacagtaggtgtataagagactcaatagatgcagggtttgatcattcacgagtaatttatttgctctctccaccatcattgcaaaacccgtctctggtgcagtggagtgctactattttttgtcatgggcaatgttttgctgagctgatcgctattggcttttacccacttactgtctatttctatgtcaactataaattcattgttcgtagaagctgtacgaaataagaggggacttttcgtctttataggaagaggctagttttgttgcctttcgttatgatagttggcaatttattttctagccgccaatttttgagttcgatacttcatttgctttctcaattttgtcaaatgtgatagtaggaaatatcatcacttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73247" stop="68881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72947" g_stop="72930" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72554" g_stop="72441" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="132" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72306" g_stop="72211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="228" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72074" g_stop="72032" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="271" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="420" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="567" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="620" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70258" g_stop="70159" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="720" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69822" g_stop="69181" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="1362" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U579246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72947" e_stop="72930"/>
          <exon e_start="72554" e_stop="72441"/>
          <exon e_start="72306" e_stop="72211"/>
          <exon e_start="72074" e_stop="72032"/>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70159"/>
          <exon e_start="69822" e_stop="69181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAGGTTGGCCTTTTCTGCATCATCTCCAAGTTTAGTTTCGTCATCGTCTCCCTGATCAACATTGCACAGCTTTCAAATTTCAAGTGCAAGGCACTGAAGTTAATCACACTGATTAATGTTCTTTTTTGACTGGGAACAGGTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAGGTGTGTTTCCATCTGGCGATACATGATGTGTTCATTTATGCCAGACGTTTGTTAATTGGAAGTACATAATTAATTGGTTATTTTTTGAGAATTGGTAGCAAAAATAACTATTAAATGAGTTATTAGTTATTTTCACAAGTTGAATATTGTATATAAGGATTAGCCATTTGCCAAATGCGGCTTTATGAAGAAGTCCTTACTTAAGTACCTTGTGGTACACTTAAGCTCAAAAACTCCATGAACTTTTATGTTGCTTGTATTATGAATTGATGTCCTTCTCCTTATAATCTTTAGAAAATATTTTGTTTGCTCGGTGTTATTGCCAAGCCATTGCTGATATATCTCTTCATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAGGTCAAATCACTACCATTTTCACTCTTGAGTATATTTTTGCATATATATACATTTCAAGGCTCACTACACTAAGCTTTATGATAGAATGTTAATGGTTTTGATAACTAGAATCTTATTTTAAGCTTTATTTTAGGAACTAAGGAGAAAAGTTTGTTCAAGTTGGGAAGAAGTATCAGAACATGAACTCCTAATGTACTTTGCCTTCTCATTTTCATTGTACTCATGAAATCAGTTCTGCCAGAATGTTATGTTTGTCATCATTCTCTAGGTTTCCTTGGCTTATGACTTCACTTACGGAGTACCATTCAGCTGGAACTAATGTTTTCTGGTTCGCAGACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</genome_strand>
        <mrna_strand>CGCCTTATTGAGATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA......................................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG........................................................................................................................................GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG................................................................................................................................................................................................................................................................................................................................................ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592860" ref_strand="+" ref_description="SGN-U592860 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|19032337|dbj|BAB85644.1| (e_value=5e-34) dynamin like protein 2a [Arabidopsis thaliana]; (*ATH) AT4G33650.1 (e_value=4e-36) | Symbol: None | dynamin-like protein 2a (ADL2a), identical to dynamin like protein 2a (ADL2a) (Arabidopsis thaliana) GI:19032337; supported by cDNA gi:19032336 | chr4:16160938-16166932 FORWARD | Aliases: T16L1.140, T16L1_140; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=3e-35) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A; ">
      <seq>ggacaaaagtactgcatcaggatcaaatgttggttcaagtgggggaatatcaggaagattaggtggctcggacaatccagcatgcgtaaaagacaatttcattaacaggccattcagtgatactgcactgagcatggatcatgctttctcaatgatccacttgagagagccaccaagtgaataagaggccttgagaaactcattcagatcaggaaactattgaaattgccattacaaaactggtattgcggtcatactatgacgatgccaagaagaatatcgaagactcggtgcctgaagcaatcatgcattttctggtaaatcacaccaaaggagatcttcacaatgtgtgcatcaagagactctacagagaaaacctcctctaagaaatgttgcaagaacctgatgagatagccatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="71996" stop="69907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71678" g_stop="71530" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="169" r_length="149" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71433" g_stop="71287" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="317" r_length="148" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762">
            <donor d_prob="0.926" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70472" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="370" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213">
            <donor d_prob="0.792" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70258" g_stop="70207" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="422" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U592860" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71678" e_stop="71530"/>
          <exon e_start="71433" e_stop="71287"/>
          <exon e_start="70524" e_stop="70472"/>
          <exon e_start="70258" e_stop="70207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAGGTATCAGTTTTGAAGGCCCTCTCTGCTGTATGATTACTTTATAGATTAGGTTGGTGATTAAACCAAACATGACATCTCTATGTGTTCTGCTTGAAGCCCCCAAGTGTCT-TGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTGGTAATTCTGAATAGAAATGACTTGGTCCTTCACATATTTCATGCTTTGATGTTTTTGACCTCTATGCAAGTGGCCTTTCAATGTACTTATGCTTAGGGATTCTCCATTTATTGGCAGTCTTGAGGATTCCTAAATCTACTCTTCTAGCACTTTCTGTGTGCTGATTTAATGATGATAGAAGTTCTTCCCATCTCGTTGCGTTCTCTTATTTCCTTCTTATGGATGTTCTCTTTCAGTTAGAATTTTCAGCACTAGAAGACACTGACCCTAGAATATGTAGTAATATGCCAACATGGGATTTTAGACAACCTGGGGGCAGAATGGATGAAACAAGCACAGTAATCTGCTTTCTTTTATTTTCTTAAAGCACAGGGGAATAGTGGCACTGTTTGGTTTTCTGCTAACAGTTCAGAGGCTAACTTTTATCTGGGGAAAGTAATTTTCTCTATTCTACCTTCAGCTAACTTAGTATTGTGTCATAGTGTCGATCTGTCAAGTGTATTTCTTCAATTGCTGATTTTGTGAAAATTGTGAAGTTCTTTATTTTATCTGGTGAAAATTTCTGTATTGTTGGAACTGTCGACTACTTTCTGTTGATAATTTTTTCTAATTAGCCAATATGAGGGAAATGATATCTGGTGTCTGTTAACTTCATTTAGACTCTGGGTGTTGTGTTTTCAGTTTTTTTAGTAAGAATGCTAATGTGATCTTCATTTTCGATTTCTTTATTGTTGACAAAAATGGTTTTAATCCTTTCTCCAGGTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAGGTATTGGAAGTGGAATTTCTTTTTTACCAAGATACTTTGCCAGGATAGTGGGCTATAGTGGCTAATTGATCCTTCATTGGCTTAGCAGCATGAGTTTTATGTGCTTATGTACTTGTATGTTGTTTCTAGCACCTGGCTGCTCAGCCAATCAAGTGCTACACATTTTTCCTGTACTCGTTGTTCTTATCAGTGGTGCTTGTTATTTTGTTGCAGAGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAG</genome_strand>
        <mrna_strand>GATCAAATGTTGGTTCAAGTGGGGGAATATCAGGAAGATTAGGTGGCTCGGACAATCCAGCATGCGTAAAAGACAATTTCATTAACAGGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG................................................................................................CCACCAAGTGAATAAGAGGCCTTGAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGGTATTGCGGTCATACTATGACGATGCCAAGAAGAATATCGAAGACTCGGTGCCTGAAGCAATCATGCATTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCACACCAAAGGAGATCTTCACAATGTGTGCATCAAGAGACTCTACAG.....................................................................................................................................................................................................................AGAAAACCTCCTCTAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578935" ref_strand="+" ref_description="SGN-U578935 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157357748|emb|CAO64742.1| (e_value=2e-77) unnamed; (*ATH) AT4G33650.1 (e_value=8e-64) | Symbol: None | dynamin-like protein 2a (ADL2a), identical to dynamin like protein 2a (ADL2a) (Arabidopsis thaliana) GI:19032337; supported by cDNA gi:19032336 | chr4:16160938-16166932 FORWARD | Aliases: T16L1.140, T16L1_140; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=7e-63) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A; ">
      <seq>gccaaatctgcattatttgtgccagaggtcccttttgaagttctcatccgaaggcaaatagcacgattaatggacccgagttttcaatgtgcacgatttatatatgatgagctggttaaaatgagccatcgctgtatggtcaatgagttgcaacgttttccaattttgagaaagcgcatggatgaggttattggaaattttttgcgtgaaggactgggaccttcacaagtaatgattggacaccttattgagatggagatggattacataaatacttcacatccaaattttattggtgggactaaagctcatgagatggcattacagcaggtcaagtcctctaggattgctgcaccgaatccgaggcagaaagtaaaattttcatttgctgatggcgtagatttagaaaaagcaccaacctctgaaagaagtctaaaatcacgtgctatacttgccagatcagttggaggttttgtccctgatcaggttgttcggcctgctccagaagttgagaaaactacagcatcaggatcaaatgttggttcaagttggggaatatcatcaatatttggtggctcggacaatcgtgcatctgtaaaagacaatttcattaacaagccattcagtgatactgcactgagcatggatcatgctttctncatgatccacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="73691" stop="71236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73391" g_stop="73365" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73364" i_stop="73241" i_length="124">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73240" g_stop="73148" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="120" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73147" i_stop="73068" i_length="80">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73067" g_stop="72930" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="258" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72554" g_stop="72423" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="390" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72422" i_stop="72307" i_length="116">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72306" g_stop="72211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="486" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72074" g_stop="72032" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="529" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71678" g_stop="71536" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="672" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U578935" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73391" e_stop="73365"/>
          <exon e_start="73240" e_stop="73148"/>
          <exon e_start="73067" e_stop="72930"/>
          <exon e_start="72554" e_stop="72423"/>
          <exon e_start="72306" e_stop="72211"/>
          <exon e_start="72074" e_stop="72032"/>
          <exon e_start="71678" e_stop="71536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAATCTGCATTATTTGTGCCAGAGGTAACTCCAAAGGATTTAACCTGTTCATTGCTTTTGAGCAAATATTTCAACGGTTTATTGAATAATTCCTGTAGTATTTATGACAATTGGTTGGTCGCATCGTAATTATTGTGTAAATATGCAGGTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAAGTAGGCCAATGTTGACAACCTTCTTATTCTTGTTATGCATTTTTATAATTGCTGTTCTAACTTGAATGATTTCTTCGTAGATGAGCCATCGTTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCAGAAGTAATGATTGGACACCTTATTGAGATGGAGGTATGTCAAAATGTTGGGTGTTTTGTTTGGTTTTGCTTATACCTAACACAATAAACACATTTGGTGTTTAAGTTTATTGAATTGATTGATAAGTGTCAACTATTTGTGAAATATTATGCTAGAATTTCAATCTGTTCTTTCTGTACATATCACAATCAAATTTTACGATTGTTGTATTGCCCTGCAGTTGTAATTAACTAATGGTATCAGGGTCTATGCTCAGCTGACATCTCAGATAAAAACTAGCTCATTTGATAGATGCCAAGATCTTGATGTAAAAGTTCGTGAATTGCTTTAGCAAATCACTAAAATTCTTAGGACTCTTTTGCTGTTAAAGTTTTTATATTGTTCAACTTAATTGTTTTTCTGTTGCAGATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCTGTTCGTATACTTTTTGCAATTGGTCTTGCAAATTATATCATACTGACCTTATCAAAAGAAAAAAATATATCATACTGATATTTTAATTTTAATTTTTTTTGCTTATTGCTATTCAGGATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAGGTTGGCCTTTTCTGCATCATCTCCAAGTTTAGTTTCGTCATCGTCTCCCTGATCAACATTGCACAGCTTTCAAATTTCAAGTGCAAGGCACTGAAGTTAATCACACTGATTAATGTTCTTTTTTGACTGGGAACAGGTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAGGTGTGTTTCCATCTGGCGATACATGATGTGTTCATTTATGCCAGACGTTTGTTAATTGGAAGTACATAATTAATTGGTTATTTTTTGAGAATTGGTAGCAAAAATAACTATTAAATGAGTTATTAGTTATTTTCACAAGTTGAATATTGTATATAAGGATTAGCCATTTGCCAAATGCGGCTTTATGAAGAAGTCCTTACTTAAGTACCTTGTGGTACACTTAAGCTCAAAAACTCCATGAACTTTTATGTTGCTTGTATTATGAATTGATGTCCTTCTCCTTATAATCTTTAGAAAATATTTTGTTTGCTCGGTGTTATTGCCAAGCCATTGCTGATATATCTCTTCATTAGGATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTG</genome_strand>
        <mrna_strand>GCCAAATCTGCATTATTTGTGCCAGAG............................................................................................................................GTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAA................................................................................ATGAGCCATCGCTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCACAAGTAATGATTGGACACCTTATTGAGATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCT....................................................................................................................GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGAGGTTTTGTCCCTGATCAG........................................................................................................................................GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTNCATGATCCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581013" ref_strand="+" ref_description="SGN-U581013 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157357748|emb|CAO64742.1| (e_value=3e-102) unnamed; (*ATH) AT4G33650.1 (e_value=5e-99) | Symbol: None | dynamin-like protein 2a (ADL2a), identical to dynamin like protein 2a (ADL2a) (Arabidopsis thaliana) GI:19032337; supported by cDNA gi:19032336 | chr4:16160938-16166932 FORWARD | Aliases: T16L1.140, T16L1_140; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=4e-98) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A; ">
      <seq>gccaattcagacttagccaactcagatgctcttcagattgctgggaatgctgaccctgatggttatcgaactattggcgtcatcacaaagttggacatcatggataggggtactgatgctcgtaactttttacttggaaaagtgattccccttcgccttggttatgttggaatagtgaatcgtaatcaggaggatattacgatgaatcggagtattaaggatgcacttgtagctgaggagaagttcttccgcaaccgtcctgtatatagtgatcttgctgatcgctgtggtgtacctcaattggctaaaaagttgaaccagattttggtgcaacacatcaaaaaactccttccaggattgaaatcacgcattagtgctggacttgtgtctgtcgcaaaggagcatgctagctatggggagatcaccgagtcaaaggctggtatgggtgctctccttctgaacattctttccaagtacagtgaagcattctcttcaatgatagaaggcaaaaatgaagaaatgtcaacttctgagctttctggtggagcaaggattcattacatttttcagaacatatttgtgaaaagtttggaggaaattgatccttgtgaagatttaagcgatgatgacctccgaactgccatttcaaatgcaaccggtgccaaatctgcatttttgtggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="78666" stop="73069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78366" g_stop="78306" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78305" i_stop="78225" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78224" g_stop="78196" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="90" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78195" i_stop="78103" i_length="93">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78102" g_stop="78001" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="192" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78000" i_stop="75745" i_length="2256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75744" g_stop="75676" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="261" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75675" i_stop="75592" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75591" g_stop="75532" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="321" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75531" i_stop="74660" i_length="872">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74659" g_stop="74546" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="435" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74545" i_stop="74363" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74362" g_stop="74314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="484" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74313" i_stop="74150" i_length="164">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74149" g_stop="74040" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="594" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74039" i_stop="73458" i_length="582">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73457" g_stop="73368" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="683" r_length="89" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U581013" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78366" e_stop="78306"/>
          <exon e_start="78224" e_stop="78196"/>
          <exon e_start="78102" e_stop="78001"/>
          <exon e_start="75744" e_stop="75676"/>
          <exon e_start="75591" e_stop="75532"/>
          <exon e_start="74659" e_stop="74546"/>
          <exon e_start="74362" e_stop="74314"/>
          <exon e_start="74149" e_stop="74040"/>
          <exon e_start="73457" e_stop="73368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGATGGTATGTTGCAACAATATATTCTATGCCGGGGAGTTTACTTGCTTTTTAGGTGCTTTCTTACATGAGAGATTCTTCTTGCAGGTTATCGAACTATTGGCGTCATCACAAAGGTCAGTGTGAAAGGACATCAATTTCATCCTTATGTTGATAATATTATTTCTCCGAATTGTTTTGAAGTGGTTGTGTTTCCATTGTTTTCACAGTTGGACATCATGGATAGGGGTACTGATGCTCGTAACTTTTTACTTGGAAAAGTGATTCCCCTTCGCCTTGGTTATGTTGGAATAGTGAATCGTAATCAGGAGGTAATACATCCATTTTTTCTTTTTACCTTTTCTTTTACGGAAAATGGTTTAAAATACCCTTGAAGTATTGGAAATGGTATAAAATTACTCTTCATCCACCTATTGGCTCCAAAATGCCCTTGTCATCCACTTTTGAGTTCAAAATTGACCACTTATTTAATGATTTTAACTATTTAAATATTTTTAAAATACTTGATGTTCAACTATTGGTTATAATTTGATTTATTTGTATTATTTATAAACCAACCCACTACCCACCCATTACTAACTAAACCCCACCCAATTAATAATCCAACTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTAATGAAAATGACATTCAAAATTATTCGAGTCCAAATCGAAGCCCCAATTAAATTTATGTTGAGCCGCTTATTTAGGAGGATACTTTCAATTTGATTCTCTTTCAAGATTGAATTAGAAAGTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTAATTCATGCACTTTTTTAAAATATAATTTTATAAATATTTATGATTTGTTTGAAAACCTTTTATATATTATTTTGAAAAAAAGTTACCTATAAAGTAACATCAGATAATTGAGACGTAAGAATAATTAAGATGAACATAGTCAAACTTTTAAGTTTATCGGTAATTTAGACACTTGAATGTATGATAATTTATTCCTATAGATATTTTCATCTCAAATTTTTAAAAACACTCAATTGGCAGTAGTTTTTTTGTTGTTGCATTAATAATGTGAGTGATTTATTAATTTAGAGGGTTTAATTAGTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAATTATAACAAATAGTTGAGCGCCACGTATTTAAAAAAATATTTAAATAGTTTAAATGTAAAACCGTTAAATAAGTGGTCAATTTCGAACAAAAAGGTGGATGACAAGGTTATTTTGGACCAAATAGGTAGGTGAGAAGGGTATTTTGGAGCCAATAGGTGGATGGAGAGTAATTTTGTACCATGTCCAATACTTTGAGGGTATTTTAGACCCTTTTTCGTTTCTTTTAAGAGGTAATACATCTAGCTACACATCTGGTGGAGGATATCGTTTCTCACGAGTTTTTGTTTATTTCTTGAGTTGGGCTCATTTGAATCATATGTATGTTTTGGAGTTGTATATGAGGTTACCATGTTTCTTTTAAAAAATCATTTATTCTTCGTAGGTATGTTATGAAGGGTGTAGAACCAAAAATGAAAAATTGTCCACTTTCTTCATGGATATCTACAGTCTTTAGGTCTCTGAGAGGCACCTCTACCAAGTTCTCTTTTCTTGGGAGTGTTTTGTTTATTTATTTCTATTTTATTCTGACTAAATTTTAACTGATACCTTTAGACATATGTGGTTTTGATCATTGTTGTGGTCATCTTGCAACAACTTCTTTCGGACAAGAAATTCTGTTGCGCGGGCAATACTTATTTTTCAAATACTGTGCGATAGATTGCATATTTACCTTCATGTCTGGATAATGGGATACATTTCAGGTTGTTTCCCTCTAAATATCTTGGGTGCTAAATTGGTATTTGGCTGCTAACTTTTTATTTGTTGTGTGATTTTCTTTTTAGCACACAAAGTAATCTTTATTGATACCCCAAGACAATGTTTTATTTTGAATCCTTATACATTACAATTATTTTAAGGATAATTTAAAACAGTAATAGGGCACCATAACCAAAATATACAAGGAAGTATCTACAATCAAGTCTATGATGGGTCAATAGAGGTAATAAACTGTTCAAGCTTTATGATTCCTCTCTGCTCTCTTTCTTTTATTGCCAAAAGAGGAGTCTGAGATATTATGGCACCCTATAACAGTTCCAAAGGACAGATGGATGATAAGAGAAAGTTGTAACCATTGAGAACCAGAACGAGTGTCAAGATCCACTGCAACTTTATAGTAGTGAAAGAACTTGGAAATCTCTAAAATTGTATTCATCTACGGAAAATCTTAGCAGCCAATGCATATTATACAACAAACCTACTTGTGTACTGCTTGTAGTAGTCTGGATTTATTAGTTTATCCAAGTACAAGGTAAGGATTTAGTTTATCAGAGAGAAAACCATTGGGTAACAAGATAACAGTGTGCTACATATGAGCAACAGTATCTGTGTGCATAGATTCAGAAATATACGTATATTGCTTTGTAAGTCTTTAATCCTATAGCTCGATTATGCAAAACAGGATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCTGTATGTTTTCTACCATCTCTTATGTAGTTGATTTCATGTTTACATCCGTGAACAATCTTCTGCTTTATCTATTTTTTCTCGAAGGTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAGGTAATCTATGCTGGTCAAAGTAACAGTGATTCTTCTTTTATTGGGTTGCCACATTGCTCACATTACATCCTTGTAGGACTAAATATTTATAAAAAATGTGAACCATAATAATGTCAAACATTATATTTATTATTTTCCTGTCATTATAGAAGTATCTCCAAATCAATTAATAAATTATAAGCTTCATCCTCTACAGTTATTTTTGCATTTTCAAATGTAATTGACACGTTGAATTCGAAAAAAAAAGCGCTTTGCTCATGTTTTGTGTTATACTTAGACATGCTTACCCTGTCACTGGTGGTTGTAATTTTTTTTTTTTTTAAACACAGTGATCATGTTATGGCACACGAGAAACACAATATGAACATTTGTACATGTAGTGGCCTGTGTTTTACCTTTCTTTTTTTGGTTTCCAGCATCTGTGATCAGGGATTTACCAAGCAGTTTATTTTTTCTTGAAAATAAACATCATAATCTGGACACTCTTTCTGACAAATTCGATGGTCATGTTCTCTATGTGTCAATCTGGTCTCTAATGCATACCTTGCTGTTTTTTGGATGAGAGTAATATCTTCCTTGTTATTTTCTTGTGTATGGGGATATTTTCTCTAATGACATGTTAAGGCTGTCTTTCCTGTTTACTGTTGCACCTATTTTAACTTGCATTTGTGCAACAGATACCTGTTCTGCTCTTAGTGTTTTCCACATCAATTGGATGATTGGCTATCACCCACCTTCAGCCCAATCCCATTGTCCTGTTCCAAAGGAAATGCAAATTTTCCAAGCGTGCTGTTTGCTTTCCAGTTGCGGATGGGACATCTTGTTGCTTTGGAATCAGATACTACTAACATGAATTTTATTGTTTAATGCAGATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAGGTAACTTCTTTTGTGTTCCCCATGCTTTACTAAGCACTGGACTGAAGTTCTGGGGATATTTTTGTCATAGTACTACCAATTGTTGAGCTCTGGAGGGTTTCTTTCTGCTAGGTTTATTGTAGTTTCTCAGCTAATGTTTTTGAACTATTTATTGACATCATTGTATTAATCCGCTGAATCTAGGCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAGGTAATGTGGCCTAAACCTTGCAATATTTGATAGTAGTCCTCTACTGGATTTGATCTCCTATATCTAATGTTGCTTTCTAGTATAAATTTCATATTAATTGACCATTTACACATCCTAACCTTATTACCAGTTTGTATTTTTTGTTTTCTTTGGGTCGAGAGCAGCATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAGGTCTACTTCTTTTCGTATTAACTTTTTTTTATGGGTAAAAGTTTCTGAAGTTTCATATTGCAATGCCTACTTTATTTTTTTATTGCTTGGAGAACTGAAATTCATCTGTAGACTTGCTCATGTTTTCAGATAAATGATACTGATGCTATTTTGTCAATAGATAGCTAGTATGTATGCTTTCATTGGTATGGTCAACTCTGAATGGCTTATAATGCTTTTATTGGGCATTAACTTTTTTATCAGTAAGGTCTTCATAAATTGTTGCTAAGGTTGTGGTGCACATGTACATAAGCCATTCATCTATTGTCCTGGTTTTCATCCACTTACATAGTGGCATAATTGAAGTCTATCTTCCATTTTGAATAGTCTTTTATTGACTAGCTCCTTCCGTCGATAAACCACAATTTTTTACAATAAGGTTTCACATACAAGTATTTTAAATCTTCAAGGCTGTAAAAATTGTGAATGACAGACAAAAGAACTTTTCAGTAACTTTGCATAATTAGTATGTTGATGTGTATAATTGGAATGTATAACCTAGGTTTAGTAGCTTACCAAGTCAGATTTCTCTTTCTCCTGCAGGAAGTTGATCCTTGTGAAGATTTAAGCGATGATGACATCCGAACTGCCATTCAAAATGCAACCGGTGCCAAATCTGCATTATTTGTGCCA</genome_strand>
        <mrna_strand>GCCAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGATG.................................................................................GTTATCGAACTATTGGCGTCATCACAAAG.............................................................................................TTGGACATCATGGATAGGGGTACTGATGCTCGTAACTTTTTACTTGGAAAAGTGATTCCCCTTCGCCTTGGTTATGTTGGAATAGTGAATCGTAATCAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCT....................................................................................GTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAG.......................................................................................................................................................................................GCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAG....................................................................................................................................................................CATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGATCCTTGTGAAGATTTAAGCGATGATGACCTCCGAACTGCCATTTCAAATGCAACCGGTGCCAAATCTGCATT-TTTGTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578894" ref_strand="+" ref_description="SGN-U578894 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157357748|emb|CAO64742.1| (e_value=1e-75) unnamed; (*ATH) AT4G33650.1 (e_value=2e-67) | Symbol: None | dynamin-like protein 2a (ADL2a), identical to dynamin like protein 2a (ADL2a) (Arabidopsis thaliana) GI:19032337; supported by cDNA gi:19032336 | chr4:16160938-16166932 FORWARD | Aliases: T16L1.140, T16L1_140; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=2e-66) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A; ">
      <seq>acacatttcagacatgataacaacatactgaatttggggaaaacgagtaacgattctcgctttgtttcttgggcagtaagacagatttccgctttcttttctacgcaatccatgagacttttcctcattcaagcctcaacaatccacttctagggttttactatcgtcaatctccggtgatcttgtatagtattctagaatttaacatggcggaagaaatatcaccgtcaaactctcccgatgcggcgtcggcggcgtcattgggtcattcagtaatacctatagtgaacaagctacaagatatattcgcacagctaggaagtcaatccacgattgagctgccacaggttgctgttgtagggagtcaaagtagtggcaaatcaagtgttcttgaggcgcttgtaggtcgagatttcttgcctagagggtctgatatatgtactaggcgacctcttgttctacagctccttaagcataattctgatgaggaatacggagagttcttgcaccttcctgagaaacgtttctatgattttaatgaaattcgttgggagattcaggcggagacagaaagggaagcaggaggaaataaaggtgtctcggacaagcagatacggttgaagatttactcaccaaatgttcttgatattactctagtggatttgcctggcataacaaaggtgcctgttggtgatcaaccctctgatattgaagctcggatcagaactatgatcatgtcgtatattaaggtccaagctgcttaatattggggctgtacacagccaattcagacttagccaactcagatgctcttcagattgctggggatgctgaccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="80364" stop="78008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80064" g_stop="79505" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78588" g_stop="78308" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="840" r_length="280" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U578894" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80064" e_stop="79505"/>
          <exon e_start="78588" e_stop="78308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTTCAGACATGATAACAACATACTGAATTTGGGGAAAACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAGGTATTTCTTGATTTGCAATAGACGAGTTAATGAATTTAAACTGGGTGTACTGCAATTTATGTAACTTTATTCATTTTCTTAGCATATATATGCTCTTTCAACTAGTTAGTTTGATTGAATAGAGCATATTATGTTTCAAGCCCTAAACTCCTAAGTACTAACTAGCCTCATATACTGAATCAGCCTATGCATTGGGTTATAACTACTGCAATATATGTACATTTATTAATCGTCATGCTAGTTATGATGATATTATTGGTTAGATGTTATAGTACACACGCCCTGACAAACTCATCTTAGATTGTTATACAGTGAATTGGCATCTCATTTGTACACTTCTCCAACTAATTAAGTGGTTACATGTAGACACTCCTTTTTTGTACAATGCTCTACCCCCATTGCAATATATACAATATCTATATGGTAAGCTGTATTCTAAAGATAGCTTGAGCAAGGAGAAACAGTAGTTCTGATTGAAAGATTATTGGCTTGTCTGTGCATCAATTATGGTTAACCAAGATTTTTTTTTTTTACAGAAGACATGGTCCTCTACAAAAGACACCCAATCCTTTATATATCCCAGACCTACATGGGTGCACCAAAAATAAAAATAAATAAGAGACTGAAGAATACTACTCAAATGCTCAAAACTCATTTCTTCCTCTTCAAAAGCCCTGTTATTTCTCTGCATCCAAATAATCCACATCAAATCCAGAGGAAAAAAGAGATAGTTATTAGACTGATCATGGATTTTGATATGGAAATATATGCATAGTAACTTCTAGTAGCAAGGATTGCATGAGGGAAGGACACTCAACATAATGCAATCTCAGTTATTGATCACGTGGTTTCTTTTCCTTGAAATTTCAGTATTTATTCTCTTTTCTAACTGCCAATCTTCCATCATTGGTATTAGGCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATATTAAGGTCCCAAGCTGCTTAATATTGGCTGTAACACCAGCCAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGA</genome_strand>
        <mrna_strand>ACACATTTCAGACATGATAACAACATACTGAATTTGGGGAAAACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATATTAAGGT-CCAAGCTGCTTAATATTGGGGCTGTACACAGCCAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGGATGCTGACCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583782" ref_strand="+" ref_description="SGN-U583782 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>cgcttctaactgaaaaagatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagatcatgtttcgccgtcgccggagctctattggacccttcaaactgctgtgcggacaagaggattgtctcgttaaggaggaatgcctcgttaaggatgatctttttgacctcaagtcaaatgaggaatgccctgtggagaatgaacttcttgaattctcatcagaggagctgagtcactttaccggtcaatattctccggagaaccttattggagtcactgacttaggaaagctctaccgtgggaaaatgcccattgtttctaatcaaggtaaagtttataaggatgtcaccgtcaagattctggttgaggatgaaaggagatttcgtatgcaaatgcccgcttctgttaaagtcaaagttctggctgatgatgaaagggcgattctaatacatgacagcaaactgttaagattggaggatgaactaaaatttttgcaagctccaaagattaggggcaatcgcagcttaatgaaagttgttggatattgtcgcaaggagattgtgggtgttgtttatgatctaaatccacttgacaccttgcataacttgatttttcaagatgacttcaattggctgcagagggtcaagactgccattgcattagctcgcttgcttgcctatctgcatgataggaaacaatcatacctgattcgaaacttggctccatcccacatagttgttgaccagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="84219" stop="86342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84538" g_stop="84568" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="107" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85003" g_stop="85388" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="493" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85497" g_stop="85638" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="635" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85915" g_stop="86042" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="763" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86043" i_stop="86173" i_length="131">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86174" g_stop="86178" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="768" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U583782" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84538" e_stop="84568"/>
          <exon e_start="85003" e_stop="85388"/>
          <exon e_start="85497" e_stop="85638"/>
          <exon e_start="85915" e_stop="86042"/>
          <exon e_start="86174" e_stop="86178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGTTTCGCCGTCGCCGGAGCTCTATTGGTGTGTATCTTCCATCCTTCTCTATACTTTAAGGTTATGCATTCCGATTAATTTGCTTTTTTAGGGTTTCGATGTATAGAAGTATAGTATATTTGAGTATTTGGAATTGCAATTTTTTCTGTTCTTTTTGTTTTTTGATGCTTCTGGTTGCAGAGATGCAAAATATGTGACATTTTGTGCTATAAGAGAAGAGAAATGCAGTTATGGGATTAGGTTTTCATTCAATTTTGATAGCTAACTAGGAAGAGCGATTAAAATCTGATCATCTAACCAACTCTGAAAATTATAACAATAAGAACTAAATGGCAATTAAATCAAGGATGGTGTCCTATAGATGAAACTTTTTTAAAAACTGAAAAGCTGCTTTGTCTAAGGATTGCAATTAGCTCTTTCTTTGATGTTAACACTGTGAGACCTTTCTCACTTCCTTACAGGACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAGGTTTGTGTCTATTTTGTGGTCATGCACCCTTTTTCTCTCGCTTCCTTACATTAATTAAGTGTTCTCTTAGTTTATGATTACTCAGAAAAATTGCTTTTGCTGGTGTAGGATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAGGTGCCCTTTTTACTCTCACATCTGTCTTTACTAATCTTTTATGCAGACTTCACCTGATGTATTTTCTGCTGTTAATTACATGCGCCGTAGCTATATTTGTGTTAAAACCCAGTGGCAATTGTGAATCTTTTGAGAAAAGGATCTGTAGTCATTACTCGGCCAAGTAGCTATAACCACAATAGAAACAGTGAGGAGGCATGCGATGTATCTCTTTATCCGAGAATCAGTAGGAAAGACACAGGCATCCCAATCACTTTTTTGGCTTTGCTTTTTCAGATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTGATTCGAAACTTGGCTCCATCCCACATAGTTGTTGACCAGGTGCAGTATCATAATTACATTTTGTTGTTTGCTTGTTGCACGTCCCATCATTATTTCTGGCCTTCGAGTCTGTTATGTTTTATTAAGGAATTCGTAAGTGACTGAAGCTTTTTTGTGTTCCCTCTCTCCAGAATTT</genome_strand>
        <mrna_strand>ATCATGTTTCGCCGTCGCCGGAGCTCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG............................................................................................................GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG....................................................................................................................................................................................................................................................................................ATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAAACAATCATACCTGATTCGAAACTTGGCTCCATCCCACATAGTTGTTGACCAG...................................................................................................................................AATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578127" ref_strand="+" ref_description="SGN-U578127 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|62132627|gb|AAX69063.1| (e_value=7e-69) monoterpene; (*ATH) AT4G16740.2 (e_value=2e-41)  Symbol: None | similar to myrcene/ocimene synthase, putative [Arabidopsis thaliana] (TAIR:At3g25810.1); similar to terpenoid synthase [Vitis vinifera] (GB:AAS79352.1); contains InterPro domain Terpene synthase metal binding domain (InterPro:IPR00563... ; (*SWP) sp|O81192|BPPS_SALOF (e_value=2e-42) (+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis; ">
      <seq>cttttacttatatgtcgttagtcgaggattagaaaactccaaccccatcgaacgtcttttgtttcatcaaactcaaattaaaatttgaaactttaagagatagatgtttaagtttggaaatcgcttagagttaaagttttaacttcaatgagatattctaaaaaattggagaattcgcataagaatttctaataaggttttaataacaaaaaattgcaaaagttaaaacaataaatagtcaaattgttaatcgccggaaaaccgtattaagcggagtgtcttaggtgccttacaccttcctaagacactaatatgaatcccgaacatagctactttcgaaactcctaaaaagtcaacaatacctttaaaataaaataaactctttttcgaaataatttttcgataaaacaatattgaacactgtacatcaccaagatgtagccacaggtgattcatgatactctacagccttgaaatttaggctcttcagacaacatggctttcatatctctccagatatatttaatgattttaaggacgtgaatgacaatatgaagcaaagtggtatattagcatttatgagagaatgccaaatgctaatcctcttttgctagagcttgctaaattagacttcaacattggtcaagtaacacaccaacaagatttgaaaagtctatcaaggtggtggaagaaaacaggactagcaaaaaagctttcattttcaagggatatacttgttgagaatatgttttggacagtgggtgcattgtttgagcctcaacatagctactttcgaagattgataacaaaagtcattgtttttatttcaatcatagatgacatttatgatgtttatggcacgcttgatgagttggaactcttcacacttgctattcaaaggtaattataattttctatcgcaaaataattacaaaatttgattttctagtaaaaattcagatgggatacaaaagcaatggaccaaattccatactctatgaaagtatgttatcttgcactcattaatattatcaatgaaggtgcgtatgatgttctcaaaaatcatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="88534" stop="91100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88834" g_stop="89349" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89350" i_stop="89432" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89433" g_stop="89597" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="681" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89598" i_stop="90410" i_length="813">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90411" g_stop="90800" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="1071" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U578127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1071</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88834" e_stop="89349"/>
          <exon e_start="89433" e_stop="89597"/>
          <exon e_start="90411" e_stop="90800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACTTATATGTCGTTAGTCGAGGATTAGAAAACTCCAACCCCATCGAACGTCTTTTGTTTCATCAAACTCAAATTAAAATTTGAAACTTTAAGAGATAGATGTTTAAGTTTGGAAATCGCTTAGAGTTAAAGTTTTAACTTCAATGAGATATTCTAAAAAATTGGAGAATTCGCATAAGAATTTCTAATAAGGTTTTAATAACAAAAAATTGCAAAAGTTAAAACAATAAATAGTCAAATTGTTAATCGCCGGAAAACCGTATTAAGCGGAGTGTCTTAGGTGCCTTACACCTTCCTAAGACACTAATATGAATCCCGAACATAGCTACTTTCGAAACTCCTAAAAAGTCAACAATACCTTTAAAATAAAATAAACTCTTTTTCGAAATAATTTTTCGATAAAACAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAGGTAGGTACATACAAATACGAGGATCAAATTATCTAATTTGTTCATGTGATTTGTGACTTTTTTTGTTTTTGTTTTTGTTGTAGATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAGGTGAGATATTTTCTAAGTGACAGATTCAGAATAGCCTTAGATTGAATTAAACCCTCCTCAAAACCACTCACTCCTTTCCAATTAGTATTATTTTTATTTTTTATTAAAAATTTGTTACCTCACTCCATCTAACCTCCGCTCCCAAATTATTACTCCCATCATTATAAAAAGAATGACTCTATTTCCTTTTTAGTCTGTTTCAAAAAAAATAACCCTCAACACTTTAACTTTAAACATGTTTATGATCAAAAGATTAAAGGGCATTTTGGTACATTTAACATAAATTTAATTTAGAACCACAAGATTAAAAAGTTTTCTTTCTTTTCTTAAACTTCGTTCCAAATCAAACTAGGTTATCCTTTTTGAAACAAGGAGGGAATATCATATTTTTTACTCTCTTTTTTTTGTGAGATATATACCTATGTTTTTAAGAAAATATTTTTTACATACAAAATATAACAGAAATAAAAATTTAGTATTTTTCTTGAGTTGGTGATACTTTAATCTTTAACTTTTAACTAATATTAATAATTTATTTAATTTTTATCAAAGTGAAATGTTTTTTCTTAAAGTGCCACGTGATAATTTTTTAAAAACAAAAGAGTGTGATACACACACCATCTAAAAGAGTGTAACAAAAGAGAAAGGTGTTTTCTCAAATAAGTGAGTGATAATTTAGGTCTGAAAATGAAAAAAAAATACATAGTTTAAATATGTTTTTGACATTTCACGTCCAAAATAAAAACTTTCAACTAATCTAGAGATGAATGAAACAAAACTTTCAGCTGAAACATTAGTTTTGATGTAAATTAGGTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACAT</genome_strand>
        <mrna_strand>CTTTTACTTATATGTCGTTAGTCGAGGATTAGAAAACTCCAACCCCATCGAACGTCTTTTGTTTCATCAAACTCAAATTAAAATTTGAAACTTTAAGAGATAGATGTTTAAGTTTGGAAATCGCTTAGAGTTAAAGTTTTAACTTCAATGAGATATTCTAAAAAATTGGAGAATTCGCATAAGAATTTCTAATAAGGTTTTAATAACAAAAAATTGCAAAAGTTAAAACAATAAATAGTCAAATTGTTAATCGCCGGAAAACCGTATTAAGCGGAGTGTCTTAGGTGCCTTACACCTTCCTAAGACACTAATATGAATCCCGAACATAGCTACTTTCGAAACTCCTAAAAAGTCAACAATACCTTTAAAATAAAATAAACTCTTTTTCGAAATAATTTTTCGATAAAACAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAG...................................................................................ATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGGTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGGTGCGTATGATGTTCTCAAAAATCATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591781" ref_strand="+" ref_description="SGN-U591781 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|62132627|gb|AAX69063.1| (e_value=2e-49) monoterpene; (*ATH) AT3G25820.1 (e_value=7e-37)  Symbol: ATTPS-CIN | Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene dupli... ; (*SWP) sp|O81192|BPPS_SALOF (e_value=1e-33) (+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis; ">
      <seq>tagagcttgctaaattggacttcaacattgttcaagcaacacaccaacaagatttgagagttctatcaaggtggtggaagaatacagggcttgcggaaaagcttccattttcaagggatattctggttgagaatatgttttggacagtaggggcattatttgagcctcaacatagctactttcgaagattgataacaaaagtcattgtttttatttcaatcatagatgacatttatgatgtttatggcacgcttgatgagttggaactcttcactcttgctattcaaaggtaattataattctctatcgcaaaataattacaaaatttgattttctagtaataattcagatgggatacaaaagcaatggagcatgttatcaatgaagtatatgaaagtatgttatcttgcactcattaatattatcaatgaagttgcgtatgaggttctcaaaaatcatgacatcaacgtcctaccctaccttacaaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="89228" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89528" g_stop="89597" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89598" i_stop="90410" i_length="813">
            <donor d_prob="0.958" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90411" g_stop="90827" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="492" r_length="422" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U591781" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89528" e_stop="89597"/>
          <exon e_start="90411" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAGGTGAGATATTTTCTAAGTGACAGATTCAGAATAGCCTTAGATTGAATTAAACCCTCCTCAAAACCACTCACTCCTTTCCAATTAGTATTATTTTTATTTTTTATTAAAAATTTGTTACCTCACTCCATCTAACCTCCGCTCCCAAATTATTACTCCCATCATTATAAAAAGAATGACTCTATTTCCTTTTTAGTCTGTTTCAAAAAAAATAACCCTCAACACTTTAACTTTAAACATGTTTATGATCAAAAGATTAAAGGGCATTTTGGTACATTTAACATAAATTTAATTTAGAACCACAAGATTAAAAAGTTTTCTTTCTTTTCTTAAACTTCGTTCCAAATCAAACTAGGTTATCCTTTTTGAAACAAGGAGGGAATATCATATTTTTTACTCTCTTTTTTTTGTGAGATATATACCTATGTTTTTAAGAAAATATTTTTTACATACAAAATATAACAGAAATAAAAATTTAGTATTTTTCTTGAGTTGGTGATACTTTAATCTTTAACTTTTAACTAATATTAATAATTTATTTAATTTTTATCAAAGTGAAATGTTTTTTCTTAAAGTGCCACGTGATAATTTTTTAAAAACAAAAGAGTGTGATACACACACCATCTAAAAGAGTGTAACAAAAGAGAAAGGTGTTTTCTCAAATAAGTGAGTGATAATTTAGGTCTGAAAATGAAAAAAAAATACATAGTTTAAATATGTTTTTGACATTTCACGTCCAAAATAAAAACTTTCAACTAATCTAGAGATGAATGAAACAAAACTTTCAGCTGAAACATTAGTTTTGATGTAAATTAGGTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCA-AAT-TCCAT--ACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACATCAAC-TCCTACCCTACCTTACAAAATCA</genome_strand>
        <mrna_strand>TAGAGCTTGCTAAATTGGACTTCAACATTGTTCAAGCAACACACCAACAAGATTTGAGAGTTCTATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGAATACAGGGCTTGCGGAAAAGCTTCCATTTTCAAGGGATATTCTGGTTGAGAATATGTTTTGGACAGTAGGGGCATTATTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACTCTTGCTATTCAAAGGTAATTATAATTCTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAATAATTCAGATGGGATACAAAAGCAATGGAGCATGTTATCAATGAAGTATATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGAGGTTCTCAAAAATCATGACATCAACGTCCTACCCTACCTTACAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570190" ref_strand="+" ref_description="SGN-U570190 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|49659437|dbj|BAD27257.1| (e_value=1e-30) d-limonene synthase [Citrus unshiu]; (*ATH) AT2G24210.1 (e_value=1e-26) | Symbol: TPS10 | myrcene/ocimene synthase (TPS10), nearly identical to GI:9957293; contains Pfam profile: PF01397 terpene synthase family | chr2:10301410-10304567 FORWARD | Aliases: F27D4.12, F27D4_12, TPS10; (*SWP) sp|Q8L5K3|RLC1_CITLI (e_value=4e-31) (R)-limonene synthase 1 OS=Citrus limon; ">
      <seq>gctgctgtttaattatttgtatagtcacgtgaaacataagtattatggatgtataaactggaaatgacaatgtctattagcaaatcaaatttaatttcgaaattagaggttccaaaatcctgcatttctaacgtgccaattcgacgatctggaaactatcaaccttctatttgggactataatcatattcaatcactgaagaatcattattcagacgagaaattcatgagacgccgcaatgagctgaagatggaagtgaagattatgctcagtgatcgtaacatgaagcaattggaacagttggagattattgataatttgcaaaggcttggattgtcttatcactttgaagatgaaatatacagtattttgaataacttaagtgacaaaggtagcaaaagagatcacttgtatgctaaagctcttgaattcaggctcttgagacaacatggatttaacattgtttcacaagaaacttttggtggtttctatgataatacaactggttttggtgaaattcatcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="92265" stop="93674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92564" g_stop="92776" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92777" i_stop="92863" i_length="87">
            <donor d_prob="0.594" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92864" g_stop="93122" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="472" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93123" i_stop="93318" i_length="196">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93319" g_stop="93374" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="528" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U570190" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92564" e_stop="92776"/>
          <exon e_start="92864" e_stop="93122"/>
          <exon e_start="93319" e_stop="93374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGTTTAATTATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCAGTAACCATTTCTCTCTAGCAGCTTATATATTAACTGTATTCACAAAATCTTTTATTTTATTTGTGTAACCCTAATCTATATATGTAGGACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAGGTCCTTTATCGTATCGACTAGTTTTCTCCCTTATTTCTATTCTATTTCTTTTACTATATCCATCTAAGTATCTTTCGGTATGACTAATTCAAATTTACACTTTGATCATTTGCACCGTATGCATGTTACCTTACTTTTTGCATTCCAAGGCTCGAATCATATGATACAAATTAATAAAATCTTGTTCTGGTTGCAGAAACTTTTGGTGGTTTCTATGATAATACAACTGGTTTTGGTGAAATTCATCATAAT</genome_strand>
        <mrna_strand>GCTGCTGTTTAATTATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA.......................................................................................GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAG....................................................................................................................................................................................................AAACTTTTGGTGGTTTCTATGATAATACAACTGGTTTTGGTGAAATTCATCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565148" ref_strand="+" ref_description="SGN-U565148 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|145666652|gb|ABP88782.1| (e_value=2e-96) plastid; (*ATH) AT3G25810.1 (e_value=2e-57) | Symbol: None | myrcene/ocimene synthase, putative, similar to GI:9957293; contains Pfam profile: PF01397 terpene synthase family | chr3:9432042-9435081 FORWARD | Aliases: K13N2.7; (*SWP) sp|O81191|SCS_SALOF (e_value=1e-52) 1,8-cineole synthase, chloroplastic OS=Salvia officinalis; ">
      <seq>gagaataccagatggagtatcgacgaattggatagactcccagacaatatgaagatgtgttattatgcgctcgataactttattaaccaattggctgatgatgcttttgaagagcaaggcattttcatttcaccatatctaagaaattcggtaacttatcccttcttctttttttatttcgaaaataagacaaattattatcatgtctgcaagtctaactcgataggtagtattacattgtgaatttaaatttcagtggagagatttgtgcaaatcatacctgagagaagcaaagtggtaccatagccagtatatcccaagtatggaagaatatatggacaacgcctggatttcaatatcagctccagtaatattagtacatgcatatttcctcgttgccaaccctgtaaacaaggaggcattgcattacttggagaataattaccatgatatcattcgttgctcagcgttaattttgaggctcgccaatgatttaggaacatcatcggacgagttgaaaaggggtgacgtaccaaaatcaatacaatgttacatgaacgaaacacaagcttcagaagaagaggctagacaatacatcagactgctgattagccagacatggaagaaattgaacgaagctcattggctagcagcagaccccttcccaaagatatttgttacgtgtgctatgaacctagcaagaatggcacaatgcatgtatcagcatggtgatggccatggcggtaataactccacgactaaaaacacatcatggcgttgctctttgaatccgtcctcttagacacaacattcttcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="93926" stop="95429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94226" g_stop="94733" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94734" i_stop="94814" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94815" g_stop="95129" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="820" r_length="312" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U565148" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94226" e_stop="94733"/>
          <exon e_start="94815" e_stop="95129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATTTCCTCGTTGCCAACCCTGTAAACAAGGAGGCATTGCATTACTTGGAGAATAATTACCATGATATCATTCGTTGCTCAGCGTTAATTTTGAGGCTCGCCAATGATTTAGGAACATCATCGGTATAATTCAACTTGTTATAAAAGGTTATCTGCCTAATTATTTTTATTTACCAACACTAGTATTTCCTTTGTGTAATGCAGGACGAGTTGAAAAGGGGTGACGTACCAAAATCAATACAATGTTACATGAACGAAACACAAGCTTCAGAAGAAGAGGCTAGACAATACATCAGACTGCTGATTAGCCAGACATGGAAGAAATTGAACGAAGCTCATTGGCTAGCAGCAGACCCCTTCCCAAAGATATTTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAACCACATCATGGCGTTGCTCTTTGAATCCGTTCCTCTAGGACACAAACATTCTTCAGCA</genome_strand>
        <mrna_strand>GAGAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATTTCCTCGTTGCCAACCCTGTAAACAAGGAGGCATTGCATTACTTGGAGAATAATTACCATGATATCATTCGTTGCTCAGCGTTAATTTTGAGGCTCGCCAATGATTTAGGAACATCATCG.................................................................................GACGAGTTGAAAAGGGGTGACGTACCAAAATCAATACAATGTTACATGAACGAAACACAAGCTTCAGAAGAAGAGGCTAGACAATACATCAGACTGCTGATTAGCCAGACATGGAAGAAATTGAACGAAGCTCATTGGCTAGCAGCAGACCCCTTCCCAAAGATATTTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAA-CACATCATGGCGTTGCTCTTTGAATCCG-TCCTCTTAGACAC-AACATTCTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565149" ref_strand="+" ref_description="SGN-U565149 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|79555268|ref|NP_179027.2| (e_value=1e-75) unknown; (*ATH) AT2G14110.1 (e_value=8e-78) | Symbol: None | expressed protein, similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAR07078.1) | chr2:5958977-5960237 FORWARD | Aliases: T22C12.4, T22C12_4; (*SWP) sp|Q9D967|MGDP1_MOUSE (e_value=1e-24) Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1; ">
      <seq>ggagggaaagcgtggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaagggttggcaacgaggaaatatgcatgtactaatattactggagctgatattgaaatccaggcgttgtccatatattcttccatacttgggatatactggctatggtaccactttgcttctctcngnnatgatttgcannantctcncnctgaaattnaaantc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99593" stop="94184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99292" g_stop="99153" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="312" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="429" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95792" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="631" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95791" i_stop="94630" i_length="1162">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94629" g_stop="94467" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="793" r_length="162" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U565149" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99292" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95792"/>
          <exon e_start="94629" e_stop="94467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAGGCGAGTAACTTGAGGCTATCAGATCCCAAAAAAGGGCACTGTGATTGATTATATAGCTATGAATCAACTGCCAAATCATATGCAGTTTTGATAATGCATTGTGTACTATGCATACTGCACCCACTGAGCCTTCTCTCTTCCCCCCTGCCCCTTCTATAAATGGGGAGGAAATTGCAGGGTGGGGAATCAAAACCTTACAAACAAGGTGAAAGTTCATTCACAACTCAATGACCCCTAGATCATGAATTTCTCTCTATAGTTGACCATAGAGTGGTCCTCTTTTTCTGCTGAAGAATGTTTGTGTCCTAGAGGAACGGATTCAAAGAGCAACGCCATGATGTGGTTTTTAGTCGTGGAGTTATTACCGCCATGGCCATCACCATGCTGATACATGCATTGTGCCATTCTTGCTAGGTTCATAGCACACGTAACAAATATCTTTGGGAAGGGGTCTGCTGCTAGCCAATGAGCTTCGTTCAATTTCTTCCATGTCTGGCTAATCAGCAGTCTGATGTATTGTCTAGCCTCTTCTTCTGAAGCTTGTGTTTCGTTCATGTAACATTGTATTGATTTTGGTACGTCACCCCTTTTCAACTCGTCCTGCATTACACAAAGGAAATACTAGTGTTGGTAAATAAAAATAATTAGGCAGATAACCTTTTATAACAAGTTGAATTATACCGATGATGTTCCTAAATCATTGGCGAGCCTCAAAATTAACGCTGAGCAACGAATGATATCATGGTAATTATTCTCCAAGTAATGCAATGCCTCCTTGTTTACAGGGTTGGCAACGAGGAAATATGCATGTACTAATATTACTGGAGCTGATATTGAAATCCAGGCGTTGTCCATATATTCTTCCATACTTGGGATATACTGGCTATGGTACCACTTTGCTTCTCTCAGGTATGATTTGCACAAATCTCTCCACTGAAATTTAAATTC</genome_strand>
        <mrna_strand>GGAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGCAACGAGGAAATATGCATGTACTAATATTACTGGAGCTGATATTGAAATCCAGGCGTTGTCCATATATTCTTCCATACTTGGGATATACTGGCTATGGTACCACTTTGCTTCTCTCNGNNATGATTTGCANNANTCTC-NCNCTGAAATTNAAANTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565150" ref_strand="+" ref_description="SGN-U565150 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|79555268|ref|NP_179027.2| (e_value=2e-75) unknown; (*ATH) AT2G14110.1 (e_value=2e-77) | Symbol: None | expressed protein, similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAR07078.1) | chr2:5958977-5960237 FORWARD | Aliases: T22C12.4, T22C12_4; (*SWP) sp|Q9D967|MGDP1_MOUSE (e_value=3e-24) Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1; ">
      <seq>ggcgattggcggccaatcggccgaattgagggaaagcgtggacgcggtaaagagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattgacactttgaacttgatgaatagataggtttcctatcctattacgtacaatattattgatagtgggaagacatatcgtccactatgattcaaaattagaatatgactgaaaattcaaaaaggttatttgttggcgagctgtaattttccttctggaccatactctgaaatgagatctgtcagacgttcaaacttcccttagttctgataaaggaaccttgtaaagtttcttctttctttcagaaagaggcgagtaacttgaggctatcagatcccaaaaaagggcactgtgattgattatatagctatgaatcaactgccaaatcatatgcagttttgataatgcattgtgtactatgcatactgcacccactgagccttctctcttcccccctgccccttctataaatggggaggaaattgcagggtggggaatcaaaaccttacaaacaaggtgaaagttcattcacaactcaatgacccctagatcatgaatttctctctatagttgaccatagagtggtcctctttttctgctgaagaatgtttgtgtcctagaggaacggattcaaagagcaacgccatgatgtggtttttagtcgtggagttattaccgccatgggcatcaccatgctgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99590" stop="94724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99288" g_stop="99153" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="338" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="96129" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="455" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95993" g_stop="95024" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="1425" r_length="970" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U565150" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1395</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99288" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="96129"/>
          <exon e_start="95993" e_stop="95024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAGGCGAGTAACTTGAGGCTATCAGATCCCAAAAAAGGGCACTGTGATTGATTATATAGCTATGAATCAACTGCCAAATCATATGCAGTTTTGATAATGCATTGTGTACTATGCATACTGCACCCACTGAGCCTTCTCTCTTCCCCCCTGCCCCTTCTATAAATGGGGAGGAAATTGCAGGGTGGGGAATCAAAACCTTACAAACAAGGTGAAAGTTCATTCACAACTCAATGACCCCTAGATCATGAATTTCTCTCTATAGTTGACCATAGAGTGGTCCTCTTTTTCTGCTGAAGAATGTTTGTGTCCTAGAGGAACGGATTCAAAGAGCAACGCCATGATGTGGTTTTTAGTCGTGGAGTTATTACCGCCATGGCCATCACCATGCTGATAC</genome_strand>
        <mrna_strand>GGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG.......................................................................................................................................GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAGGCGAGTAACTTGAGGCTATCAGATCCCAAAAAAGGGCACTGTGATTGATTATATAGCTATGAATCAACTGCCAAATCATATGCAGTTTTGATAATGCATTGTGTACTATGCATACTGCACCCACTGAGCCTTCTCTCTTCCCCCCTGCCCCTTCTATAAATGGGGAGGAAATTGCAGGGTGGGGAATCAAAACCTTACAAACAAGGTGAAAGTTCATTCACAACTCAATGACCCCTAGATCATGAATTTCTCTCTATAGTTGACCATAGAGTGGTCCTCTTTTTCTGCTGAAGAATGTTTGTGTCCTAGAGGAACGGATTCAAAGAGCAACGCCATGATGTGGTTTTTAGTCGTGGAGTTATTACCGCCATGGGCATCACCATGCTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587089" ref_strand="+" ref_description="SGN-U587089 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|79555268|ref|NP_179027.2| (e_value=4e-69) unknown; (*ATH) AT2G14110.1 (e_value=3e-71) | Symbol: None | expressed protein, similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAR07078.1) | chr2:5958977-5960237 FORWARD | Aliases: T22C12.4, T22C12_4; (*SWP) sp|Q9D967|MGDP1_MOUSE (e_value=3e-19) Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1; ">
      <seq>ggagagatgggagacgaaaaggtgaagaatgaagcaatggagataatgggattgttccaagttcttcctcgtctcgtcgtcttcgatcttgattataccctttggcccttttattgtgaatgccgctccaaaaatgagaagccatcgatgtatcctcaggccaaaggtatcttgcatgccttcaaagacaaaggagtgaatgttgctattgcctcaagatcgccaactccagatatagcaaatgctttccttcaaaaactggagataaaatcaatgtttgtagcccaggagatattctccagttggacacacaagacggaacactttcagaaaatcaaccgaaagactacggtgccctacaatgagatgctgttttttgatgatgaaaatcggaacatacaggcggtaaaatcactttttgtcaattgtatcatgcattcagtcgattcaattaattacatcgctcgtcggtctagatcaaataattgctacatgcaaatcctagagatacacatagtaagctaaagcagtatctttcaggtttcaaaaatgggtgtcacaagtatattggtgggcaaaggggtaaatttaggggctttgaggcaaggactctccgagtttgttaagaattctgcttcagttgaaaagaacaaagaacaatggcgcaaattctcaaaagaaccaggttcatccaaaagtgatgcacaatgacgatttagcagtccccagcacacaaataaaggtaattattgggacatcagttgcactagtagtcaagaatatggcacaagtcccatatcgattcatccatatctgttcttattaaaggatcatcgtccatttttttggatgttattgttgtatggatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="99567" stop="95361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99268" g_stop="99153" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98321" g_stop="98150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="288" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96245" g_stop="95661" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="873" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U587089" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99268" e_stop="99153"/>
          <exon e_start="98321" e_stop="98150"/>
          <exon e_start="96245" e_stop="95661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTGGTATCTCTCTCTCTCTCTCTCTTCTTCCTGGATTTGAACTGATGCCCAATTTTGACTCTTCTTTTCTTTTTCTGAGTAATTGACTTGCTTTCCCTGTCGCTGTGTTGGAACTTCTTTTCTTTCTTTTTTATTTTGTGTTCTCTTTTGGGCGAAAAGGGATTGATATTGAGTAATTGATTTCTTATTCTGCTAGCACGATTGAGTTTTCAACTCTATGGGAGTCTATTACAAGTTCGTTTGATCAACTGGTTACTATATGTAGGAAATTCTTAGCACATAGACAGAGTTCCTATCAAAGCTATTAGGTTCGGATGAACACTCTACATCCAACCCCGGGGGAATGAGGAGGGCTATGTCCAGGGGAGGACGTAGCCTCTCGTCAATAGGATCATCGGAACCCTTTACTTTCAAGACAGAATATAAAAATATATATGATAAACATCTTAACAAATCTTAGACCTGAATAAATAATTTAATATTACAATGAGTTCAAGTTGAACCTGTTAAATGTAATTCTAGATCCACCGCGGGTTTATGGCTTTTATAGGTACACTTTGTATTTTGATTGAGTTAATACTAAGTAGAGCGCTACTTTAGGAAACCAGCATACTATGTCATGATTTTCTAAAGCCAGGGATGTATGAGTTGATTGAATTCTATGTTTCTTGTCTCTGTATTAACATGCTTGCTACAACTGGAAGTGACTGCTCCTATATTTTCAACACCCTTATTATCTATCCAAAAAAAAAGAGACCTTATTATTTGCTTAAACTTGGTCTTGTACTCTTGGTTTACTCATAATACCATTTCTGTCTACTTTGATTCTTTCAGTGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAGGTGAGATGATAGAAGTCTCAGCATCTTGTTTTATTTTTCCTTTGGTTCTATGGTAACCTGCAAATTTTATTGATATTAGTAAATTCTGCTGCACATTTAGCTCTGTGCCTCTTTCTTAGTAGCTGACTTTGTTGCAACCATGCTTTTCATGGTTGAGGAGTTGGACAGTATGCTGGAGTAGAGAGACAAAAATAGGTCCATAACTATGTTATCCATATGATATGGGATGAAGAGTTTAATGTCGCATAGAAATGAATGAATACTTTTAAAAAGCCCTTCATGACCAAAAATGTAAAGTAAAAAAGCAAAAAGGCTTCTATATAACTTGAACAAACTGTTGCAGTTTGATTCAGGGCTTTTTGTTAGCTAGTCTTTAGTTTATCCTAAATAGAGTTTCTTGTTCCCTTTTCTCAGAAAGGTTTCGACATAGCAAGTATTTCATGCCAATTTCACTTTTCAGATTGGCCCTGCATATATGTAAATTATTTACTAATTGTTCTGATTTCTACAGTCCAACTTAGTTTATTAAACATTTTCTAGGCAAACCAGACTCAGAAGGCATCTTCAGATTTGTGTGGTCCATAAATTATTTGCAGGCCACATTCTAGTCAAATTGGCTGGTCTTTCCGTCTTGGTGGTTTAGTTGGTTTTCTAATCACCTCCTATATAGATCTGGGAATGTACTTGAGACAAATTTAGTTTATCTTGGATTTTGGGACTAGGAGAGCTTAAGTATTTAACTTCACTGTTGGTGGAAAAACTTAACCTCTTTAAATATTGTTAAGTCAAATAATACCTTCTTTGTTTCGCACTTGACCCACTTACTTGAAGTTGTGTCCGTATTCAGCTATTGCTGAATAAACTCGAAGAAGTAAATTTCCTTTTTAGCTTTAGAATCGGCATCAACATCTTGGCTCCACATATAATATTTATTTTTTCCTGAGAAGTAATCAAGGTGACGTTCTTCTCACATATCAAAAGGAAAAGAAATTCAGACTGAGGTGTCTTGGCCGGAATGACTATCTAGCAACAAGCATAGGATTCATTTCCACCTTATGATTGGCACTAAATTCAAAGGAGGCACCCAAGTATCTAGGCTCGTAAACATGTTTCTCGGACTTTTCAAAAATGTGACGGGTGCATGTAAGATACTCCCAAAGTAGTGAATTTAGGAGAACCCGACATATGTGCGACAATATTTTTCAAAAGAGTCTGAGCAACATAGCAGGTAAACCAGCACTTGTCTAAAACTAGTTGGTCATAAAGAGCGTTTATCTTTATCTATTATCAACACTCCGTATCAATTGATATTCTCTCTACTTTCCTTGTCAACTTACTCACTTGTGGGCCACTTACCTATATCAACTGAGTCGTCAAGGTATCTTCTTTTAGCCACTTCTTAGCGACCTCAAGAATTAGGATAGCTCAAAGGTATCGAGACAAAGTTCATCACTGTAGGAACCTCTTAGGAAATTCTTATATTGTATTGTTTCTGTTATTTCACATTTCCTGGCAGCAACAACCTAAAGAATATGCTAATAATATTACCAAAGAAAAGGTTTCGGATGGAATTATTAAAAAAATAAATTAGGATAAAGGGTAAAATCAGGTGGTTAAGTAATAAGGGCAAGATGAGAACAAACTGATCACACCAAATGGACTGTTGCATAAAATGATAACCTTTCATCGTTACACAACGACAAATTTAACAATAGGATACACTAAAATTTAAGTAATAATCAAAACAAATATTGTATTTGAATTAATAATATGATACAATAAATAGGTAACCATCCAAACAAGCTGTGTAAAATGCTCACTTTCATGACTGGGCTCTCTATATTCATTTTTAGCTGATGCTGCTTACTGTGTGAGGTCATCATGCTAATGACTTAGTGTTGCAGGAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGA</genome_strand>
        <mrna_strand>GGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565997" ref_strand="+" ref_description="SGN-U565997 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|186515959|ref|NP_001119110.1| (e_value=3e-51) unknown; (*ATH) AT4G33625.1 (e_value=2e-53) | Symbol: None | expressed protein | chr4:16152933-16154707 REVERSE | Aliases: None; ">
      <seq>ggagattcaaaacctcctgaaatcctccgccgatattctcattcgcgagtgcgcacgaagtaaaggaaaatggaattccattaataaatccagagaaactctttcaatttgaagttcaattgaagaaattgaaagaagatggagagagatggcgaaggaatagtgagctcccagtcgcagagggttaacaatggtcgttcaatttcacccaatagagtccgaaccggatccgaccccttcctggtgacttgtagagtgttcagcttcgttactgcacttgttgctattctctgcattgttgttaatgtctattctgctgtccgatcctttaagcatggatatgacgtattcgatggaattttccggtgttatgctgtagtgattgcggttattgtggttgttgcggagactgaatggggatttttcatcaagttctggaaggtgttggagttttcagctggaaggggcatgctacagatctttgttgcagtgatgaccagagcttatcctgaagattatgggcaaaggaatgacctcatccttctccggaacatagctagctactttcttcttacctgtggtgcaatttacataatatcaggattgttgtgctttggatttatcaaacgtgctcgtcaggcaaaagaaatatccagggagcaagcaattaacgatcttcaggatttggagcgtcgtagagaagagcttgaagctctgttgatacaggagagggcttgagaaatagagctggcatttatggctatggcttgaagctctgttgatacaggagagggcttgagaaatagagctggcatttatggctatggcaaatcactgtcgaaatggaggagaaaacttggaaaggaaagctcaaatgagcgaacttgatgttcatgtgttttacctgcctttttacctatgtgagattgaaaattttcactagatgtattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="105222" stop="99568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104923" g_stop="104579" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104483" g_stop="104388" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="441" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102899" g_stop="102859" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="482" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102755" g_stop="102638" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="600" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102637" i_stop="102098" i_length="540">
            <donor d_prob="0.072" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102097" g_stop="102017" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="681" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102016" i_stop="100140" i_length="1877">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100139" g_stop="99868" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="953" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U565997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104923" e_stop="104579"/>
          <exon e_start="104483" e_stop="104388"/>
          <exon e_start="102899" e_stop="102859"/>
          <exon e_start="102755" e_stop="102638"/>
          <exon e_start="102097" e_stop="102017"/>
          <exon e_start="100139" e_stop="99868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGACGTAAGCCCTTCCTCTACTGCCATGTATTTGTGCTAATCTGTCTCTGTAAGTGCGATACTCGGACCTTATTGTTGTTTTGATGCAAAATTTTCTAGGTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAGGTGAGTTGTGAAGTCTTAGTTTTCCTTCTGTTATTTGCTGGCATTTTTATTAATGAGGCGTTGTAATTGGAACTGTTCAAATTTCAATGCCAATACTAGTATGTGTTTGCATTTGGTTCTGCTTTATTAACAAAATCAAGCAGTAATGATTCGATTGATGATAATGTAAATGTAGTTTTGTAACATCACTCTTTGCAGATTTAACAACACAAACAATTGAGTGACATCATATAGTAATAGTAGGGAGCCACCCAAAAATGAAGGGGCTACTGGCAAATGCTATTGGCAATACCAATGCTTACAAAAAGAATAAAGGAAAAAAGACTTATACAGTGAGCATAAGTAGTTTCTGTCTGCTCTTCTCCTCCGAAGGTTGGAAGATTTGCGAGCCATGTTGTGTTGTTAGGATGATTTGTGACTAACGAGGAGATTATTTTGTCTTAATTTGTTCATGAACTTGTCATAAGTGATCATTCTGTTTTCCGTAATCCAGTTTCTTCTGTCTCTTACCTCTTCAGAAGCTCAGTCTCCCATTCGGCAATAGAGCTAACCCATCTGTATAGAAAATTATAATGTGTCTTTTTGCCAGATCGTCAAGCTTACTTTCCGTATACTAACTTTTGGACTGGAACATACAAATTGTTTCCCTTGATTCAACATAGTCATGAACCCAAACACTCAAAAGGAGGGCATAGGGCTCAAAGATTAGATCGATGTTACGACCTATCAAAAACAAAAAGTTAGATTGATAATATTCTTGGGGTAAAGTCGAGTTTATGGTTTGACTGGAGTTATTAAGCAAGAATGCCAAGTTTATCTAACACAGAGAAACATAGCTAAGAAGTCTAAACGACATGCAACACTTAGAGATTCGGGAGTTTAAGGATGAACCAATTTGGTCTTTTAGGCTATATAATATTGGAAATGTCATACTATACTATCATTCATTTAGATAGATATTTGAACAATATTAATGTTTAATATTTAGGGAAAACATGGAATAAAAATAAGGAGCACTAGAATGAACAAACCATGTGAAAAATATCCTCGGTTGACCAGTAATTAGCAGTTTGTTATGATGCAATTGTTTGTCTGCTGCAGCAAAAGAGGTGTTTTCCTCCTTTCAGTTTCTGTCCCTTTAATGCTCAAACTCATACTCAGAAGCATCCCCCATATTATGCCATTTTTGTCTTCTTCTATACTCTTTTCATCATCAGTTTCATCATTAACCTTTATAGTCTCGTATTAAAGCTAATTAATCCAGATATAGCTTAATTATTTTAGTGTTCCAGCAGTTTTTCTTCTCATAGAACAACTGGAAAGGTTCCACTTTTTCTTAGGGGCTAAACATTAAGAATAATATCCTTCTATGTTGTATGCAGTATTATTATTATGTGCTTTCTGGTCGTTTGCTCATTTTGACCCGATACCTTTGACAATAAATAAATCCCAATAAACTGATGCCAAATTTCAATGACTTTTGAGTAGGTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTTGTAAGCAAAACTTTTGGCTTGCTGAGCTAGTTAAAATCAGACTTAACAAAATAGTTAGTTTTTAGGGGGGGGAACTGACTCTCCTCTTTCTGGTTTTTTCTAGTGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCAGTAAGTTCAGGAAACCATCAGGTTGCTACATGACAATCATTTGTCTGTCAGGGTCCATGCTGTTGTAGCTTGTATATGGTATGACACAATCCTGAAGAGTATGATGTGTGGCCTTGCTTCTCTTGGTCCCCTCCCACCTCTCGTGGAGGCAGTAAATATGAATATTTATAACAGATAGCCTTTGACTTTAAGACAGGAGAATTCCTTCCAAGAATGCAAGCAGTGGGCACCTGTCAATTAGGCTATCAGAAGTTATGCTAGATGGTCTTAAACATCATTTGTTTGCATGACCATGTAAATCTTAAGCGTGTTTACTAGGTCTCCATGATATACAGAGTGCTGCTAAAGATTACAGCCTGTAGTTTGATTGCCTGCATTCTGTGCCATTCTTTTGAACTTCCTTTTTCTTGTATTTGAGCACGAGGGCTTGCTTCTGACTGCACACATGCTACTAAGATCCATCTTGTTGAGTATTTTTGGGGTACCATATGGTACAATAGACTTTAACTTTGTTTTTTTCTTGACATATGTTACTTGTAGGGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAGGTAATCCATGATATCTTATTACATGCTTGTCCTGTTGGAAGCAAACCTTGAGCTGAAAACCAGAGGAAGAGTTAGATATGTGATGCTTCTCCAGGCCTTACACGGGTCTCACTCTCTAAATCTGTTCTTGTTTTTCTGTGTCTTCTCTGGTACTCTGGTTTACTGCTGCTTCCACTCACATCTCCAAACAGTATGTACCATCCAACCTTCTGAATTATTAAGCTTAAAACCCTAACATTACTCTCTGTTAGAGACGATATGAAAAGAGAAAAGGTGGACAGAGAACTCGAGTTTCATAACCTTCTTGTCAGGTCCATATCTAGATTAAGCTTACAACTGGATGAAAGTAGATTTGGTTCAGAGGTTTTCTGTTGTAAAAAATTAAAATGGTGCATGCTTATAGCCAATTTTGCAAATATCACCTGTTGTGATATAACTAGCAACTATAACTGGGCCATACTCTACCATTAAATTTCGATTCACAAGCTGTACTTTGCAAGAGTACCTCTCAATAATTGGTATGAGAGACAGCAAGGCATAGCTAAAACGACAAGACTTCAAAAAGTCAAACGTGTTCACATTAAGCAGTTGGGTTGTATAATTTTTTTACTGTTGTCGATATGTGTTTATCTCATTCCTTGGTGGCTGGTTGTCATTGTAACTTTGATAATTTGGGCAAAGAAAAGTAGCATAGAATGTGGGTAGTTAGACAGACATTACATTTTATTGAAATCAGAGGCAACTATTTGTGCAAGAGAGGAGATTTTTGGTTTCAGGGATTCCTGGACGAACTTCTAGGTAAATAATATTGCAGATAAAGAGTTTTTGGAATTGTATCTAAACAAATGCTGGTTCAGCCAGTAGGTGCTATTTTTTAATGAATCTGGTGTCCAAGTGAGGTGATAGTGTTGCACATTCCATTTTGGTTTGAATCAGAGGCAAATTATTTGTTCAAGAGGGGAGATATGGATCCAGGGATTCCTGGAAAGCCTTTTTGGACAGTGATATTGGAGATGAAAGGTTTTCAGAAATCTTTCTAATTACATTCTGGTTAAGCCAGTAGGTGATAATATCCTTTAAAAATAATAAAGAAATTAGCAGTGGTGTCCAAGCTAGGTGAAATTGTTTTAGTGGAGATTCAGACTTGGGATCTGCAGGTTGTTGCTCCTACACCTCAACCACTTATGTCTCCTCTTCTCGACCAAGGTTATAGTGTACTCTTAGACTTTACATTAGAAAAAATTAATGATTAGTAATAATTAAAAGGACATCTAATATGGCATGTATTCCTGAGCAAAGCATGTGTAGTTAAACTTGCATGCATTTTAGCTGGAAACGGGGCTCATCTCTCTGTCATAACTCATAGGACATAATTAGGCACTAGTATTTCTGCAGAACGTTTTGAATAAGTGATACTCAATAGCAGGGGTTACATGTCTCCACCCCCTGCCCTCTCTGGAAGTCTCCTGTCCATGTCCCTGCGCCTCCAACTACCCCAAGGGAGCAATCTCGTTTCTTTGCTTATTTGATGTCATTCAGTTTATAGCATAATTACATTGTGAAAAGTTGTTTTCCAAAGTCTATTACATGAGAATTACAATGTTTTTGGTTATGCTTCTCATTTTTTAAATAATGGTAGTAAACCCTTAATACCTGCCTTCCATATATTCGGATATGCTAATCCCTAAAGACTTGCAGGAAAAAAAAATATCTGTTCTCCCCCATTTCCCCTTTCACAACTCCAGTTGCATCATTTGAGTATGAATTTCAAACTATTGTTTCTTGACCTGCTCCTATTTCCATCGTGGATGACTTTGACTCATCTGTTTATCTCCTTCTGACTATTCCTGAAAACATATTAATGATTATAATTTCAGGATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATTGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCATGTGTTTTACCTGCCTTTTTACCTATGTGAGATTGAAAATTTTCACTAGATGTATTGCA</genome_strand>
        <mrna_strand>GGAGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC...............................................................................................GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT.......................................................................................................TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATGGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCATGTGTTTTACCTGCCTTTTTACCTATGTGAGATTGAAAATTTTCACTAGATGTATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571188" ref_strand="+" ref_description="SGN-U571188 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157357763|emb|CAO64757.1| (e_value=3e-24) unnamed; (*ATH) AT4G33630.2 (e_value=1e-22) | Symbol: None | expressed protein | chr4:16155506-16159938 FORWARD | Aliases: None; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=1e-21) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1; ">
      <seq>atcaacatccttatccctttttatttcctattcatcactctcttttttttaattttctttaccaattcttgtttttctttctatcttcttcttcttctatcgcaaattcactgagtactatttctttggatattattaaatcaagagacaacgctgttattctctttttcatggcgtcgattactcccccgccgacatttgatgtaaacactcacaaattcaacttctcaaaccctaaattcacttcccgattaaagcgttcatcttcgtctttcactctttcaacctctcatttactatctagggtttccggttccgctttctgttgtcgttgcaggaatggtaccggtgatggtgagactgttgagccatcgccatctgtttcttctcagaatagctcatcttcttcttcttcttggagatgggatttggcgtttcaagatgcggtcaagaatgcgatgaaaaagttggatgattatgtgaattggtcaaaaggagtgggacttgatgagaggaagagtgaaattggtgttgatgatcaagaatgggattgggaacgatggaaaaagcattttagtgaggttgaggaggaagaacggttggtttctgttttaaaggcacagttggctcatgctattagtagagaagattatgaagatgctgctagactcaaggtggccattgctgctgcagctactaaggacattgttggaagagtgatgtcccatgtaaataaagccttggaagaagagcgctacagggatgcagcatttatgcgtgattgtgctggtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="107568" stop="111009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107868" g_stop="108484" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108485" i_stop="109907" i_length="1423">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109908" g_stop="110024" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="734" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110025" i_stop="110649" i_length="625">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110650" g_stop="110709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="794" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U571188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107868" e_stop="108484"/>
          <exon e_start="109908" e_stop="110024"/>
          <exon e_start="110650" e_stop="110709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACATCCTTATCCCTTTTTATTTCCTATTCATCACTCTCTTTTTTTTAATTTTCTTTACCAATTCTTGTTTTTCTTTCTATCTTCTTCTTCTTCTATCGCAAATTCACTGAGTACTATTTCTTTGGATATTATTAAATCAAGAGACAACGCTGTTATTCTCTTTTTCATGGCGTCGATTACTCCCCCGCCGACATTTGATGTAAACACTCACAAATTCAACTTCTCAAACCCTAAATTCACTTCCCGATTAAAGCGTTCATCTTCGTCTTTCACTCTTTCAACCTCTCATTTACTATCTAGGGTTTCCGGTTCCGCTTTCTGTTGTCGTTGCAGGAATGGTACCGGTGATGGTGAGACTGTTGAGCCATCGCCATCTGTTTCTTCTCAGAATAGCTCATCTTCTTCTTCTTCTTGGAGATGGGATTTGGCGTTTCAAGATGCGGTCAAGAATGCGATGAAAAAGTTGGATGATTATGTGAATTGGTCAAAAGGAGTGGGACTTGATGAGAGGAAGAGTGAAATTGGTGTTGATGATCAAGAATGGGATTGGGAACGATGGAAAAAGCATTTTAGTGAGGTTGAGGAGGAAGAACGGTTGGTTTCTGTTTTAAAGGTACAATTTCTGTTTAGATTAGTTTGCATGTTACTCTGTGAAAGTTAACATTGATTTTGCATGTGTTTTAGAGGGAGTCTGATGAAGGTTTAGATTTGTTGTCTATGAGAATTTTATTAAGATGTGGCAGATGGTGAACTGTATTTAATGTGCATGTTTGTAGTGGTGGCGATTCCGGTCTGTAGTTAGATACATTCATGCTACATGACCTTATTTTGACCATGTTTCAACAATTAACATCAAAGGTCCATTATTAGGCATGTTTTTATTTGGATTGGCGAAGTTCAAACTATTCGTTGATGATATTGGTGATTGTAAAGGTGACACTTTTAAACCTTTCAGGGTCTATCAGACTGAAGCACATGTGATATTTCATAGTCTACATGATGCAATGAGCGGTGTCATCCACATATACTCAAGACGAGTGTTGTAAAAATGTGGATGTTACAATGAATATCCGATCATGCACTACTAGATTAGAAACCTTAAGAGGGTAAAAAATAGCACAATAGAATATAAGATGAGAGATAGTTGCTTGGTATAGTTTTGTCATGTCCTACTAGACTTCCATATGCATCAGTCCTTAGGTTACAGTATGATGATTAAACTTGGTAAAAATGGAGCGAAGTAAACCTAAAAAACATATTGATGGAGGTTGCACATCTGGGTTGGTAGGACATTATGAAGTAAATTGTATACATAGACCCAAGGTGTTGCCTAATGGTCAATGAAGTGGGAAAGAACCGTGAGAAGGTCTAGGATTCAGAATCCAGCCAATGAATAGATATGAATGATAACGTATTGGGATTAAGGCTTAGTTGTTATTGTATACTTATATCAGGTCTCCTGTCTGCCAGGAGTTCGGTTAGACTCTTATATTTCAGTATAAACTACAAAGATAAGTTGAGATTTATAGAAGCTTAATTTAGCTGGCAGAATATTTCTATTTAGCTTGTAATGTTGGCAAATTGTTGGAGCTGTTCCCATCTTTTGTATCCTCTTAGCCTCTTCTAGATGCCTCTTAATGAAACTTCTTGCTTCATTAATTTTGTTTCGCTTAGGAACAAAATTATTTAGTATTGAAATGACATATGAGTCCCAAGTAAAGCGAAATGGATATACAGGATTCATAAGTCTGATACCAATTGATTGAGGTGTAGATTGTGATCACCTGTGAGGAATAGCTGAAAGGGCCATCAGAAGTTCTTTGAGAATAAAAAATGGTCCTTGAGGTGAATACCATCTCAAATAGGGTTCTTGGTAATTTACTGAGCATTTTTGTTAGGTTTTGGTTAGTTTGTAATTTTCTTAACTTGTTTGGACATTCTGCTAGAGGCCTTTATTAGATCACAAACACAAACATTTATGCTCAATCAGAGTATTTTATATTTTTGCTGTTTTAATGGAGCTGTTATTTCACCAGGCACAGTTGGCTCATGCTATTAGTAGAGAAGATTATGAAGATGCTGCTAGACTCAAGGTGGCCATTGCTGCTGCAGCTACTAAGGACATTGTTGGAAGAGTGATGTCCCATGTAAATGTAAGATTTATGCTGCTATTTTGGAACAATCAGTGATATCATCTTCCTTTGCCTTCTCAAAATATATATGCATACATATAGAATGTGTGTGTATGTGTGTTCCTTTGCCTTTTCAATTGTTTAGTCAGAGGTTGTTAGTTAACTTGATTTAGACCTTAAAATTGAGTTGAACGTGACTGCATGTTAGATGAATTGGCTATTGAAAAGGAAGATCTTCCATTGTGTCAAGCCTCATCATTTAACTGTGGTATGAACTGTGTTCTCTTGTTTTCAAACTTAACATTATTTAGCTTTCTTATCTTGCAATGAAATTATTACTTCATCTAAAAAAGTACATTTCTCTATCTTGACCTTTGGACATTTGATAGCACTTATGGTATGGCTAATGATAGACATTTATGAAGCCTCAGAGTCGAATTTCGTTCGAACAAAAAGAAAGGAAATAGGACTGCTTAATTCTTTTTTAACTAATGATGAAAATTTAGAAGCACCTATTGTTCATTGCACAAATGTTGGTTTCAGGTTTGAGTATGCGGCTGTTATTTTAAGGTCCTTCTGTGCCTTGTTCATCTTACAGTATTTTATTTCATGGTAATTGATGCTCACCTTCTAGAGTCTAATGCAGAAAGCCTTGGAAGAAGAGCGCTACAGGGATGCAGCATTTATGCGTGATTGTGCTGGTACA</genome_strand>
        <mrna_strand>ATCAACATCCTTATCCCTTTTTATTTCCTATTCATCACTCTCTTTTTTTTAATTTTCTTTACCAATTCTTGTTTTTCTTTCTATCTTCTTCTTCTTCTATCGCAAATTCACTGAGTACTATTTCTTTGGATATTATTAAATCAAGAGACAACGCTGTTATTCTCTTTTTCATGGCGTCGATTACTCCCCCGCCGACATTTGATGTAAACACTCACAAATTCAACTTCTCAAACCCTAAATTCACTTCCCGATTAAAGCGTTCATCTTCGTCTTTCACTCTTTCAACCTCTCATTTACTATCTAGGGTTTCCGGTTCCGCTTTCTGTTGTCGTTGCAGGAATGGTACCGGTGATGGTGAGACTGTTGAGCCATCGCCATCTGTTTCTTCTCAGAATAGCTCATCTTCTTCTTCTTCTTGGAGATGGGATTTGGCGTTTCAAGATGCGGTCAAGAATGCGATGAAAAAGTTGGATGATTATGTGAATTGGTCAAAAGGAGTGGGACTTGATGAGAGGAAGAGTGAAATTGGTGTTGATGATCAAGAATGGGATTGGGAACGATGGAAAAAGCATTTTAGTGAGGTTGAGGAGGAAGAACGGTTGGTTTCTGTTTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGTTGGCTCATGCTATTAGTAGAGAAGATTATGAAGATGCTGCTAGACTCAAGGTGGCCATTGCTGCTGCAGCTACTAAGGACATTGTTGGAAGAGTGATGTCCCATGTAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTTGGAAGAAGAGCGCTACAGGGATGCAGCATTTATGCGTGATTGTGCTGGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583570" ref_strand="+" ref_description="SGN-U583570 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157357763|emb|CAO64757.1| (e_value=3e-150) unnamed; (*ATH) AT4G33630.2 (e_value=7e-110) | Symbol: None | expressed protein | chr4:16155506-16159938 FORWARD | Aliases: None; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=6e-109) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1; ">
      <seq>ggtttacttgaagagaaagccagttcagcaagatttacctatttcttcttcaaagctgcccggtgcttccagtaacttggacactgttggtcccactgaaaacaaaagtgatatgtttgataagatctcagatgctgaggaagatggcgaagacagggaagacgattttggctttcagaatgcattgaaagacatgattccaggggtacaggtcaaggttttgaaagtgacagctccagggaaggtagatagagatctaatatcaaaggtcattgagcaaataatggatgaggaagatgaggatgaagagaaggactatgatttggacagtgtggatgacgaagatgaaattaaggtggaaagagatggagagcagaatgtgattgaattggatacagacaatggggttagtgatggtgaagagcagagccaaattgcagttagggtggttgttggtggtctcatgcaaaattcctcaaatggtgctcatcataaagatctgcttcgagtaccggcaaggctagagaagaagggtcacctgtcatttactttcactatagaggaagatgagaacaaaagcaatttctctggcagtggacaatctcccccaaataaaaaggctaggcttcaaggtcaacgtagcttggatcatgtgatggttgatcttgcaaagttcatgggcaaggggaaaatacctatgaaggtccttaaagatatgggagagttgatcagcctcactcttactcaagcacgaaatcgtcagccattatcaaagtcaaccacctttaaccgcattgagatttcaacatctccagacccactaaatggattatatattggtgctcatggtctgtacacttcagaagtcattcactttagacgaagatttggtcagtggaaagaagacggtagccctaaagagtcttcacgcttagaattttacgagtatgttgaagcggtaaaattaactggagactcttatgtgccagctggtcagatagcattccgtgcaagaattggaaaaaagtatcaacttccacataaaggaattattccagaagaatttggtgtgattgctcgttataggggacaaggaaggctggcagagcctggtttccggaaccccagatgggttgatggtgaactggttatcctagatggaaagtacattaaaggaggacccgttgtgggttttgtctactgggatcctgaatatcatttcttagtattcttccatcggcttaggctgcaggagtgaacatctctgtagatacaatttttggctgtttgttcctggttcagttctttgcagtcaacatgatatctagtaccacgaaccttgagctgaagagaagactcaagatttcgtttgaatatggagtccttggcaactgactgttttagtggccagcataaaaccttttgcattatatggaactaacagccatttttgagttgatagcccccaatatctctggtatagcaaatggtcgaggcctactagcattttcttagggcactgagcttgtacatatgctctttatttgtttttttttcagctcttgtattattcttttttctccttcagtaaacattgttgtacgttcaaaaaacttggaatttattctctaatagaatccgaagatagaacggtacattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="113075" stop="117495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113374" g_stop="114076" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114154" g_stop="114277" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="827" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114278" i_stop="114437" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114438" g_stop="114607" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="997" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114608" i_stop="115976" i_length="1369">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115977" g_stop="116051" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="998" r_stop="1072" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116052" i_stop="116196" i_length="145">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116197" g_stop="116289" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1073" r_stop="1165" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116290" i_stop="116395" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116396" g_stop="116542" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1166" r_stop="1312" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116543" i_stop="116845" i_length="303">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116846" g_stop="117195" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1313" r_stop="1662" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U583570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113374" e_stop="114076"/>
          <exon e_start="114154" e_stop="114277"/>
          <exon e_start="114438" e_stop="114607"/>
          <exon e_start="115977" e_stop="116051"/>
          <exon e_start="116197" e_stop="116289"/>
          <exon e_start="116396" e_stop="116542"/>
          <exon e_start="116846" e_stop="117195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTACTTGAAGAGAAAGCCAGTTCAGCAAGATTTACCTATTTCTTCTTCAAAGCTGCCCGGTGCTTCCAGTAACTTGGACACTGTTGGTCCCACTGAAAACAAAAGTGATATGTTTGATAAGATCTCAGATGCTGAGGAAGATGGCGAAGACAGGGAAGACGATTTTGGCTTTCAGAATGCATTGAAAGACATGATTCCAGGGGTACAGGTCAAGGTTTTGAAAGTGACAGCTCCAGGGAAGGTAGATAGAGATCTAATATCAAAGGTCATTGAGCAAATAATGGATGAGGAAGATGAGGATGAAGAGAAGGACTATGATTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAGGTTAGAACGCTTTTATCTTGTCGTTCAAATTGCTTAGTTTTTATTCTTCTCTTTAATGGTTTTACTGAAATATGCAGGTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATGGTGATTAATCTTCAATATGTCTTTCTTCTTTTATTCTCTTGCTGTCTAGATTGCTGATTTTCCTTTGTCTAGTAATTAAGCTTGTTCAACTAGTGCATCGTCATTGTTATTCTACCCACTCTCATTCTTAAGTCGGATGATCATTTACTATTTTTATCAGGATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTCAGTGGAAAGAAGACGGTAGCCCTAAGGAGTCTTCACGCTTAGAATTTTACGAGTATGTTGAAGCGGTAAAATTAACTGGAGACTCTTATGTGCCAGCTGGTCAGGTAACTTTACTTTGAATCCAAAAGTTGTGCATATAGTCTAACCTACAGAAGGTAGAGTCGCATTTTTTTCTTTTTAAATTAATCTAGGATATCTGAGATCATCCATTCTTGTTGGAGCGTAGAGATCCGAGACTAACGATATAATGGATAAGCTGGACATAAAAGCGTACCTGTTTTCTATGCCTAAGTCGCATAGGTGTATTGCTAATCCTTTGAGTAATGAAGATTGAAAATCTACAGTGTGTCATATCTTGTATTTGTGCGTTTTAGTATGTTGTAAAAAAATTCTTGCCTTGCTTTTTAAAATAGAGAGGGGGCAAGCGTGATGGAATGGTGTTCAACCCAGTGTTGTGGACGGCGAGAGGCGACAAAAGGCGACAAGGGCCTGCCTCGCCAGGCGGCGAGGCGAGCGGCGAGGTGCTTGCCTTTTTGAATAAAGGCGCCAATTAATACCAAAAATTAAAAATATTTAACTGCATATTTTATCCAAAATCTTAATAGCAATAACACATATTAGCAAATATTCAATTCAAAAACTAATAGTAGATACTAAAATGTCTAAAACTTTAATGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGAAGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTGAGCCGGCGGCCTGCGAGGGAGAAGGAGAACAGAATCCGACAGCGAGGGAGAACTGGAGAGAGGCTCGCGATGGAGAAGCTGACAGCGAGGGAGAAGAGAAGAGAACTGGAGAAGAGAGTCAATCGAGAGAGAGAGTCGCGATGGAGTTTCAGAAATTTCAGAAGTAAAAAAAAAAACCCTAATTTTGACTAATATTATTAAGTCAAATATTTTTAATTAAAAAGGCAGCGCCTTTTCTGTCGCCATTGTAGCGCCACACCTCGCCACTCCTCGCCTTTTTGCTATCGCCTCGCCTCGGCAGAGAATGGCGAGGACCCATCGCCTCGCCTCTCGCCAAAGGCGATGAGGCGCTCGCCTTTTGTAACACTGGTTCAACCATTAATGCGTTCCTTTCTAATTTGCAGATAGCATTCCGTGCAAGAATTGGAAAAAAGTATCAACTTCCACATAAAGGAATTATTCCAGAAGAATTTGGTGTGGTAAGTGATCTAGTGATTTTTGGATTGCTTAATATTTGTTTTGCCTATCTTCTTTTTGGTGCATAAGTTCCATGGCTATCAATTTTATGATGTGTGGGTCTATCTCTTACATTTTAGGCCTATATTTTCTCTATTACCAATGCAGATTGCTCGTTATAGGGGACAAGGAAGGCTGGCAGAGCCTGGTTTCCGGAACCCCAGATGGGTTGATGGTGAACTGGTTATCCTAGATGGAAAGGTTTAGAGATCTCTATTTAATGGCACCCTTTTTCTTTTGTTTTGTTGTCTCTTTATTCTCTCAATTTCATTTTCTCCACATATTTATTTCCTGTTGAATTGTGCAGTACATTAAAGGAGGACCCGTTGTGGGTTTTGTCTACTGGGATCCTGAATATCATTTCTTAGTATTCTTCCATCGGCTTAGGCTGCAGGAGTGAACATCTCTGTAGATACAATTTTTGGCTGTTTGTTCCTGGTTCAGTTCTTTGCAGGTATGCTCTTTTGCACTTGTGTTTAGCAAATTGGCTCTAATTTAACACACACACACAAATTGACATGCAAAAACTCAAGAAAAACAATCACAGCCCCCCCCCCCAAAAAAAAATGCAGATAGCTCACATTTTAGTCATAAAAAACCATGTTAGATGGTCAACTATCATTTAGATGGTCAACTATCATTTACTTGACATTCTCTTCAACATTCAAGAATTGTATAGGTACAAACTTAATTCTCTTTAACCGATATCACTTTGATCTCCCGATCTCAAGATGTGTGCTTCTCTGTTCCTTTGCAGTCAACATGATATCTAGTACCACGAACCTTGAGCTGAAGAGAAGACTCAAGATTTCGTTTGAATATGGAGTCCTTGGCAACTGACTGTTTTAGTGGCCAGCATAAAACCTTTTGCATTATATGGAACTAACAGCCATTTTTGAGTTGATAGCCCCCAATATCTCTGGTATAGCAAATGGTCGAGGCCTACTAGCATTTTCTTAGGGCACTGAGCTTGTACATATGCTCTTTATTTGTTTTTTTTTCAGCTCTTGTATTATTCTTTTTTCTCCTTCAGTAAACATTGTTGTACGTTCAAAAAACTTGGAATTTATTCTCTAATAGAATCCGAAGATAGAACGGTACATTGGC</genome_strand>
        <mrna_strand>GGTTTACTTGAAGAGAAAGCCAGTTCAGCAAGATTTACCTATTTCTTCTTCAAAGCTGCCCGGTGCTTCCAGTAACTTGGACACTGTTGGTCCCACTGAAAACAAAAGTGATATGTTTGATAAGATCTCAGATGCTGAGGAAGATGGCGAAGACAGGGAAGACGATTTTGGCTTTCAGAATGCATTGAAAGACATGATTCCAGGGGTACAGGTCAAGGTTTTGAAAGTGACAGCTCCAGGGAAGGTAGATAGAGATCTAATATCAAAGGTCATTGAGCAAATAATGGATGAGGAAGATGAGGATGAAGAGAAGGACTATGATTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG.............................................................................GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAAGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATG................................................................................................................................................................GATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTCAGTGGAAAGAAGACGGTAGCCCTAAAGAGTCTTCACGCTTAGAATTTTACGAGTATGTTGAAGCGGTAAAATTAACTGGAGACTCTTATGTGCCAGCTGGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATTCCGTGCAAGAATTGGAAAAAAGTATCAACTTCCACATAAAGGAATTATTCCAGAAGAATTTGGTGTG.................................................................................................................................................ATTGCTCGTTATAGGGGACAAGGAAGGCTGGCAGAGCCTGGTTTCCGGAACCCCAGATGGGTTGATGGTGAACTGGTTATCCTAGATGGAAAG..........................................................................................................TACATTAAAGGAGGACCCGTTGTGGGTTTTGTCTACTGGGATCCTGAATATCATTTCTTAGTATTCTTCCATCGGCTTAGGCTGCAGGAGTGAACATCTCTGTAGATACAATTTTTGGCTGTTTGTTCCTGGTTCAGTTCTTTGCAG...............................................................................................................................................................................................................................................................................................................TCAACATGATATCTAGTACCACGAACCTTGAGCTGAAGAGAAGACTCAAGATTTCGTTTGAATATGGAGTCCTTGGCAACTGACTGTTTTAGTGGCCAGCATAAAACCTTTTGCATTATATGGAACTAACAGCCATTTTTGAGTTGATAGCCCCCAATATCTCTGGTATAGCAAATGGTCGAGGCCTACTAGCATTTTCTTAGGGCACTGAGCTTGTACATATGCTCTTTATTTGTTTTTTTTTCAGCTCTTGTATTATTCTTTTTTCTCCTTCAGTAAACATTGTTGTACGTTCAAAAAACTTGGAATTTATTCTCTAATAGAATCCGAAGATAGAACGGTACATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586949" ref_strand="+" ref_description="SGN-U586949 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>attcaaaatacaataaaccaaaactttaaaagtctattctttcttcaaaattatccaacccttgagtgtcataattccatccaatgtccctcttttgctagcaaccaccattgattattaaattcaattaattcgctgtttaggaatattgaaataaataattaggaaaatggaaagatttttttttaaattaactgcctataattaaaaaaagtaaattacacaaagcagtaagcaactaagcactgcttacagccttgcaccaaaaaaacacaactgaaaaaaaaaaaaaaactgatgaagaagaacagaaaaaaattgttgaagaagaagagagaaaacgacatacctggagaacagagagtcgcgagggaaaagaatcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="114888" stop="115872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115188" g_stop="115572" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U586949" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115188" e_stop="115572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGAAGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTG</genome_strand>
        <mrna_strand>ATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGATGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573539" ref_strand="+" ref_description="SGN-U573539 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147771197|emb|CAN72022.1| (e_value=2e-103) hypothetical; (*ATH) AT2G22570.1 (e_value=2e-85) | Symbol: None | isochorismatase hydrolase family protein, contains Pfam profile PF00857: isochorismatase family protein | chr2:9596518-9597959 REVERSE | Aliases: F14M13.1; ">
      <seq>gaattgactattagaaaattggcagggaaaaacaaagatggtaataaaaacagtagatcttttgaagaatgaaattcccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgttggagctggaaatctggcaccaagagagcctaacaggcagatcagtgaaatgattgatgaatcatcaaggcttgctagagcgttttgtgacaagaaattgccagttcttgcctttcttgattcacatcaacctgataaacttgaacacccatatccttctcactgcatcactggcactgatgaatccaacttggttcctgcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttccttcaacaacttgaacaaaccatgatgtattgccaatcttttctttagaaaagactgcattttatgtactccagtagtttctatgatcacaataatactacaacatgatgtgctgtttccattagattaacgcaagaatagggttgccttgtctagtcaatagatgtatgttatgaatgcagtgtccattcatttccttataataggatagtagtctatccataaatttgcccaaaataatatattgtactacagtttcaatagatttcgtattggacataacaattgcatcagaaaattgaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119381" stop="117146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119070" g_stop="118907" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="178" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118647" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="362" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118325" g_stop="118192" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="496" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118092" g_stop="117907" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="682" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117446" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="1056" r_length="374" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U573539" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1041</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119070" e_stop="118907"/>
          <exon e_start="118830" e_stop="118647"/>
          <exon e_start="118325" e_stop="118192"/>
          <exon e_start="118092" e_stop="117907"/>
          <exon e_start="117818" e_stop="117446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGGCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTGGTACTAATTTTACTACTAAAAATAATGGTTATTTCATCAATGGGAAATTTGTGATATAGAATATGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTG-CCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAG</genome_strand>
        <mrna_strand>AAAATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG............................................................................GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG.................................................................................................................................................................................................................................................................................................................................CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG........................................................................................GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589267" ref_strand="+" ref_description="SGN-U589267 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147771197|emb|CAN72022.1| (e_value=2e-22) hypothetical; (*ATH) AT2G22570.1 (e_value=6e-19) | Symbol: None | isochorismatase hydrolase family protein, contains Pfam profile PF00857: isochorismatase family protein | chr2:9596518-9597959 REVERSE | Aliases: F14M13.1; ">
      <seq>aaggaaatgaatggacactgcattcataacatacatctattgactagacaaggcaaccctattcttgcgttaatctaatggaaacagcacatcatgttgtagtattattgggatcatagaaactactggagtacataaaatgcagtcttttctaaagaaaagattggcaatacatcatggtttgttcaagttgttgaaggaaacttctttagctatttttgcaccccttcccttggccatataaagtcccacatgatgcattagctcctgcaaaatccaaaatatcaagacgactagttaaacactgaataagttgatcaagaagtcgacaattttgttatttgttatagattacctgtggatgtggtgaaatatctttggtgtatcttgccatagagagtggaaaatcaaaggtggcacatccctgagagtaaactactacatcctttaaagggttgaggaatccgcggttcttagctgataatgtagagcaaacaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="117252" stop="118352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117552" g_stop="118052" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U589267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117552" e_stop="118052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAATGAATGGACACTGCATTCATAACATACATCTATTGACTAGACAAGGCAACCCTATTCTTGCGTTAATCTAATGGAAACAGCACATCATGTTGTAGTATTATTGTGATCATAGAAACTACTGGAGTACATAAAATGCAGTCTTTTCTAAAGAAAAGATTGGCAATACATCATGGTTTGTTCAAGTTGTTGAAGGAAACTTCTTTAGCTATTTTTGCACCCCTTCCCTTGGCCATATAAAGTCCCACATGATGCATTAGCTCCTGCAAAATCCAAAATATCAAGACGACTAGTTAAACACTGAATAAGTTGATCAAGAAGTCGACAATTTTGTTATTTGTTATAGATTACCTGTGGATGTGGTGAAATATCTTTGGTGTATCTTGCCATAGAGAGTGGAAAATCAAAGGTGGCACATCCCTGAGAGTAAACTACTACATCCTTTAAAGGGTTGAGGAATCCGCGGTTCTTAGCTGATAATGTAGAGCAAACAAAGT</genome_strand>
        <mrna_strand>AAGGAAATGAATGGACACTGCATTCATAACATACATCTATTGACTAGACAAGGCAACCCTATTCTTGCGTTAATCTAATGGAAACAGCACATCATGTTGTAGTATTATTGGGATCATAGAAACTACTGGAGTACATAAAATGCAGTCTTTTCTAAAGAAAAGATTGGCAATACATCATGGTTTGTTCAAGTTGTTGAAGGAAACTTCTTTAGCTATTTTTGCACCCCTTCCCTTGGCCATATAAAGTCCCACATGATGCATTAGCTCCTGCAAAATCCAAAATATCAAGACGACTAGTTAAACACTGAATAAGTTGATCAAGAAGTCGACAATTTTGTTATTTGTTATAGATTACCTGTGGATGTGGTGAAATATCTTTGGTGTATCTTGCCATAGAGAGTGGAAAATCAAAGGTGGCACATCCCTGAGAGTAAACTACTACATCCTTTAAAGGGTTGAGGAATCCGCGGTTCTTAGCTGATAATGTAGAGCAAACAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573538" ref_strand="+" ref_description="SGN-U573538 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147771197|emb|CAN72022.1| (e_value=1e-52) hypothetical; (*ATH) AT2G22570.1 (e_value=3e-46) | Symbol: None | isochorismatase hydrolase family protein, contains Pfam profile PF00857: isochorismatase family protein | chr2:9596518-9597959 REVERSE | Aliases: F14M13.1; ">
      <seq>ggatttcccaccacatgtgatggaaaaacagattctcacgaaaatagtagaaaactttactattttttgcaatgactttcatctttaagtatatacatatccatattagcaaaaaaaagggggacaaaaccatcaaaattttggacaattactcgatctgtgatcaatcgttgcctaggagttggggactctgtattactcgatttgtactgattatttgattttgtatcatctactctgatgatgaaattgttgcagcactaagatgggtggaggaggaaccaaatgttaccatcaggcgcaaagattgttatgatggctatattggttcctttcaggaggatggctctaatgtatttgttgattgggtgaagaacaaccaagttcaacttttgttggtggtaggggtgtgcacggatatttgtgtgctggactttgtttgctctacattatcagctaagaaccgcggattcctcaaccctttaaaggatgtagtagtttactctcagggatgtgccacctttgattttccactctctatggcaagatacaccaaagatatttcaccacatccacaggagctaatgcatcatgtgggactttatatggccaagggaaggggtgcaaaaatagctaaagaagtttccttncacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="118882" stop="117440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118583" g_stop="118192" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.128" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118092" g_stop="117907" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="578" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117818" g_stop="117740" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="657" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U573538" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118583" e_stop="118192"/>
          <exon e_start="118092" e_stop="117907"/>
          <exon e_start="117818" e_stop="117740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTTGTATGTACTCACTCTCTTTTGCTTCTCTAAAACTTCCTATTATATGGTTCATATAACACATTTGTGGTTGACTTAACTGTTTTGTTTACTTGAACCAAGTTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAGGTAATCTATAACAAATAACAAAATTGTCGACTTCTTGATCAACTTATTCAGTGTTTAACTAGTCGTCTTGATATTTTGGATTTTGCAGGAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACT</genome_strand>
        <mrna_strand>GGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT...................................................................................................TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG........................................................................................GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTNCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589268" ref_strand="+" ref_description="SGN-U589268 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|217073560|gb|ACJ85140.1| (e_value=4e-11) unknown; ">
      <seq>aaagatgtgtaataataacagtagatcttttgaagaatggaattgccatagaggaggaatcagtagtcatcactgaagatattaaggctggacttgttcttgtggacataatcaatggattttgtactgctggagctgcaaatctggccacccaagagagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="119351" stop="118606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119051" g_stop="118907" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118830" g_stop="118815" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="164" r_length="18" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U589268" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119051" e_stop="118907"/>
          <exon e_start="118830" e_stop="118815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATG-GTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTGGTACTTACAATTAAACTTGTTCTTTGTTTTATTACTTAATTAACTAGTTGATTTTTTTTTTGCTTGTAAATCATAGG-CA-CCAAGAGAGCCTA</genome_strand>
        <mrna_strand>AAAGATGTGTAATAATAACAGTAGATCTTTTGAAGAATGGAATTGCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGCTGGAGCTGCAAATCTG............................................................................GCCACCCAAGAGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563133" ref_strand="+" ref_description="SGN-U563133 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157357760|emb|CAO64754.1| (e_value=7e-114) unnamed; (*ATH) AT5G64380.1 (e_value=3e-108)  Symbol: None | fructose-1,6-bisphosphatase family protein, similar to SP:P22418 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Spinacia oleracea}; contains Pfam profile PF0... ; (*SWP) sp|Q07204|F16P1_BRANA (e_value=8e-48) Fructose-1,6-bisphosphatase, chloroplastic OS=Brassica napus GN=FBP; ">
      <seq>ggaaaagaattgcggataaatgaggaattttttttaaaaaataggatgcttcttctgtaccaaagttgcctgcggtagagcataaagatgctatcatcgaccatttcttccctaaattttccaccaagaaccaaactctcctcaccaaaccctgcaatttttcctcaaaactacaattttgtacctttttgtactgaaaatatggcttcttctccattttctggagggttaattaactccagggttgattcaccaattgcaattggctgtaaaaatgcttcagtagattctgctaatagtgggttttcaacactgatggagtatatgggtaaaggaggggttgatgtgggtgatgacttggtgttattgtttggtcacttagaatatgcctccaagaaaattgctgctcttgttgcttgccctttcaattccagcctcaacaacaatgttgccattggaaatacggggacttcttctgatagagataagcccaagcctcttgatattgtttcgaatgagattatattgtcgtctcttagaaattcgggaaaagttgctgtaatggcctcagaagaagatgagtgtcctgtgtggataactgatgatggcccgtttgtggttgtcatggatcctttagatggttcccgaaatatagatgcctcaatacccactgggacgatatttgggatttacagacgtcttgtggaaattgatcatttgccggtggaggaaaaggctttactaaactgccttcagagtggatcaaagcttgttgcagcagcttatgttctctattcgtcagccacaatactctgtgctagctttggttctggaacacatgcattcacattggatcatacaaccggagatttcctcttgacacatcctaacatcaacattcctcctcgagggcaaatttattcagttaatgatgctcggtattttgactggcctgaaggattaaggcagtatattgatacgataagacaagggaaaggacaacatcctaagaagtactcagccaggtatatatgttctctagtggctgattttcatcggactctgttatatggtggcgtagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="122276" stop="119943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121977" g_stop="121465" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120907" g_stop="120511" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="910" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120510" i_stop="120419" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120418" g_stop="120243" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="1086" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U563133" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1086</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121977" e_stop="121465"/>
          <exon e_start="120907" e_stop="120511"/>
          <exon e_start="120418" e_stop="120243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAATTGCGGATAAATGAGGAATTTTTTTTAAAAAATAGGATGCTTCTTCTGTACCAAAGTTGCCTGCGGTAGAGCATAAAGATGCTATCATCGACCATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCGGTCTGTCTTTTGGGAATTTTTGGTTATTTGATTGTCACCATAAATTGTTGATGTTGCTTTTCTATAATTATTTGATTTCATAATCTATAAGATTCCTGTTATTATAAGCAATAATATAACAATAATAACATAGCCAATTGAATCCCATGTATGCAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTAACAGTACGTTGTTCTGTTTTTTTTCCTCCTTTTTCTGTTTGTGGGATCTTCCATTAATGAATTAGGAAGAAGATCATTGTGTCTTCTCTAGTCTTAATGGATCCAAGAATAGTCTCATGTTCTAAGACCTTTTTATGTATGTTTGTTCAGAATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAGGTATTGCTATATCATAAGTTTGTTCCTCCAAATACGTTTTTGCATATTACACCTTCTAAACTGATAGTTACATTGTTGACATTTTCTGGCAGGGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCTGTTATATGGTGGCGTAGCAATG</genome_strand>
        <mrna_strand>GGAAAAGAATTGCGGATAAATGAGGAATTTTTTTTAAAAAATAGGATGCTTCTTCTGTACCAAAGTTGCCTGCGGTAGAGCATAAAGATGCTATCATCGACCATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAG............................................................................................GGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCTGTTATATGGTGGCGTAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602140" ref_strand="+" ref_description="SGN-U602140 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caaaccttttaacttctactgcactgtatagagagacccaataaagtggaattgggattgatgaattattgattgattgatgttatttataggttgctgttaaattaggtccttgctctgataccttgttaaattaggtctttcgtgtaactcacatctcaaaagctagttcaaagagagtaggattgtccaagccttataaggagttcactcatgtcattaaccatcggtgtgagacttttgtcattctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="-" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="121611" stop="120758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121311" g_stop="121058" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="-" ref_id="SGN-U602140" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121311" e_stop="121058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTA</genome_strand>
        <mrna_strand>CAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTATAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572806" ref_strand="+" ref_description="SGN-U572806 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157357759|emb|CAO64753.1| (e_value=1e-31) unnamed; (*ATH) AT5G64390.2 (e_value=1e-17)  Symbol: None | KH domain-containing RNA-binding protein (HEN4), contains similarity to RNA-binding protein; identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404; contains Pfam domain PF00013: KH domain; identical to cDNA HEN4 (HEN4) GI:28261402 | chr... ; ">
      <seq>gaggaaagtcctaagctactacactaatgcacgaaaactctgttgccgcctccgtccccaattcctccaccgccgccggtgccgttggtgttcccgccgtggtcaacaactcacaccttccaccacaaccattagcgagacgtgttgtgttccgacttctgtgccatgcttcacgcgtcggtggagttatcggaaaatcagggtccattattagacaactacaacaagacacctccgctaagattcacattgatgtgtccgcaccaaacgaccacaatcgactcattgtagtagtagcccctgcttcagtaaacaagaggataaggctactgggccccattggggataaccagcgtaatgaagaaattgatgaaatagaggtttcggctgcacaagaagcacttgttagggtttttgagagagttatagaagtaacagcggaaaataatggactagttttgggtgtggagaatgttgtgtcctgtaggttattagtaaaggggaatcaagtgggggctttgatgggcaaaggtggaaaagtaatagatacaataagaagagaaaatggatgtaggattaaggtattaacttcagggaagatgccaagttgtgcttcgcccaatgatgaaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0245N21-SJR7t/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0245N21.2" temp_strand="+" temp_description="C01HBa0245N21.2  AC233128.6 htgs_phase:1 submitted_to_sgn_as:C01HBa0245N21 upload_account_name:manual">
        <position start="124950" stop="126182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125249" g_stop="125882" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0245N21.2" gen_strand="+" ref_id="SGN-U572806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0245N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125249" e_stop="125882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAAGTCCTAAGCTACTACACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCCCCAATTCCTCCACCGCCGCCGGTGCCGTTGGTGTTCCCGCCGTGGTCAACAACTCACACCTTCCACCACAACCATTAGCGAGACGTGTTGTGTTCCGACTTCTGTGCCATGCTTCACGCGTCGGTGGAGTTATCGGAAAATCAGGGTCCATTATTAGACAACTACAACAAGACACCTCCGCTAAGATTCACATTGATGTGTCCGCACCAAACGACCACAATCGACTCATTGTAGTAGTAGCCCCTGCTTCAGTAAACAAGAGGATAAGGCTACTGGGCCCCATTGGGGATAACCAGCGTAATGAAGAAATTGATGAAATAGAGGTTTCGGCTGCACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTTATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGTCCTGTAGGTTATTAGTAAAGGGGAATCAAGTGGGGGCTTTGATGGGCAAAGGTGGAAAAGTAATAGATACAATAAGAAGAGAAAATGGATGTAGGATTAAGGTATTAACTTCAGGGAAGATGCCAAGTTGTGCTTCGCCCAATGATGAAATTGT</genome_strand>
        <mrna_strand>GAGGAAAGTCCTAAGCTACTACACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCCCCAATTCCTCCACCGCCGCCGGTGCCGTTGGTGTTCCCGCCGTGGTCAACAACTCACACCTTCCACCACAACCATTAGCGAGACGTGTTGTGTTCCGACTTCTGTGCCATGCTTCACGCGTCGGTGGAGTTATCGGAAAATCAGGGTCCATTATTAGACAACTACAACAAGACACCTCCGCTAAGATTCACATTGATGTGTCCGCACCAAACGACCACAATCGACTCATTGTAGTAGTAGCCCCTGCTTCAGTAAACAAGAGGATAAGGCTACTGGGCCCCATTGGGGATAACCAGCGTAATGAAGAAATTGATGAAATAGAGGTTTCGGCTGCACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTTATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGTCCTGTAGGTTATTAGTAAAGGGGAATCAAGTGGGGGCTTTGATGGGCAAAGGTGGAAAAGTAATAGATACAATAAGAAGAGAAAATGGATGTAGGATTAAGGTATTAACTTCAGGGAAGATGCCAAGTTGTGCTTCGCCCAATGATGAAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="22332" PGL_stop="21831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22332" e_stop="21831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="22332" e_stop="21831" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22332" stop="21831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  F  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  L  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  L  L  L  W  L  A  I  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  D  S  S  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  *  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  K  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  F  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  F  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  S  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  I  *  *  K  N  I  F  Q  S  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  S  P  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  Y  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  L  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22303" stop="22073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQSYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDNPFKSSEISSILSPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="27858" PGL_stop="31156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27858" e_stop="28326"/>
            <exon e_start="30244" e_stop="30393"/>
            <exon e_start="30475" e_stop="30642"/>
            <exon e_start="30901" e_stop="31156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.879"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27858" e_stop="28326" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28327" i_stop="30243" i_length="1917"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30244" e_stop="30393" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30394" i_stop="30474" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30475" e_stop="30642" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30643" i_stop="30900" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="0.879">
            <gDNA_exon_boundary e_start="30901" e_stop="31156" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27858" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28136" stop="28326"/>
              <exon start="30244" stop="30393"/>
              <exon start="30475" stop="30642"/>
              <exon start="30901" stop="31012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAACAAAATTGAGAAAAATCTCCATCTCTCTCTAGACCTTTCTCTAGAGAGAGAATCTATATCTATCTATATATATATATATATATATATCAGTGAGTGAGAGGATTTAAGAAGATTTCTTCTTCTTTATTTCTGAAAAATCTGTAATTAATTAATAATGGAAGGAAAAAAATTTGCAGTTCTATTATGTGCAGAGGATTCAGAATACGTGAAGAAGAAATACGGGGGTTATTTCGGGGTTTTCGTGAGAATGCTGGCGGAGGAAGGGGAAACGTGGGACTTTTTCCGGGTGGCTCATGGCGAGTTTCCGACGGATGATGAGATCGGAGAATTCGATGGATTTGTAATCACCGGAAGTTGCAATGACGCGCATGGTAATGATTTGTGGATCTGCAAGTTACTCAATCTGCTCAAAAAAATTGATTCAATGAAGAAGAAAGTTTTGGGTATTTGCTTTGGACACCAG : ATATTAGGACGATCATTGGGTGGCACTATAGAGAGAGCTACTAATGGTTGGGACATTGGTGTGACTACTGTTAATTTATCAACGTCAAAGCAATTCAACTCTCTCAAATTACCTGCATTTTTGCAAATTATCGAGTGTCATCGCGATGAG : ATCCGTGAACTTCCACCAAAGGCAGAGGTAATGGCATGGTCCAACAAAACTGGAATTGAAATGTTTAGATATGGTGATCATATAATGGGCATTCAAGGTCACCCTGAATACACCAAAGACATTCTTCTCCATCTCATCGATCGTCTTCTTCAACACAACCTTATTGAG : GAGAGCATGGCTGATGTGGCCAAGGCAAAGGTTGAAGAGTGTGAACCAGACAGGGAGCAATGGAAGAAATTATGCATTAGCTTTCTCAAGGGTAAATTGTGATTGCAATTGGTCAAAAAGTGTAAATAGGAGATGATATGGTGTTAGATGAACTTTTAGACTGTTTTGGGACTTTTGAACTTATTAGACATCCATTACATGTCCTTATCAACAATCTTATATTAAACTTTTTAACTATTGAAATTGATAACTAAGT</gDNA_template>
            <first_frame> A  K  Q  N  *  E  K  S  P  S  L  S  R  P  F  S  R  E  R  I  Y  I  Y  L  Y  I  Y  I  Y  I  Y  Q  *  V  R  G  F  K  K  I  S  S  S  L  F  L  K  N  L  *  L  I  N  N  G  R  K  K  I  C  S  S  I  M  C  R  G  F  R  I  R  E  E  E  I  R  G  L  F  R  G  F  R  E  N  A  G  G  G  R  G  N  V  G  L  F  P  G  G  S  W  R  V  S  D  G  *  *  D  R  R  I  R  W  I  C  N  H  R  K  L  Q  *  R  A  W  *  *  F  V  D  L  Q  V  T  Q  S  A  Q  K  N  *  F  N  E  E  E  S  F  G  Y  L  L  W  T  P   : D  I  R  T  I  I  G  W  H  Y  R  E  S  Y  *  W  L  G  H  W  C  D  Y  C  *  F  I  N  V  K  A  I  Q  L  S  Q  I  T  C  I  F  A  N  Y  R  V  S  S  R  *   : D  P  *  T  S  T  K  G  R  G  N  G  M  V  Q  Q  N  W  N  *  N  V  *  I  W  *  S  Y  N  G  H  S  R  S  P  *  I  H  Q  R  H  S  S  P  S  H  R  S  S  S  S  T  Q  P  Y  *   : G  E  H  G  *  C  G  Q  G  K  G  *  R  V  *  T  R  Q  G  A  M  E  E  I  M  H  *  L  S  Q  G  *  I  V  I  A  I  G  Q  K  V  *  I  G  D  D  M  V  L  D  E  L  L  D  C  F  G  T  F  E  L  I  R  H  P  L  H  V  L  I  N  N  L  I  L  N  F  L  T  I  E  I  D  N  *   </first_frame>
            <second_frame>  Q  N  K  I  E  K  N  L  H  L  S  L  D  L  S  L  E  R  E  S  I  S  I  Y  I  Y  I  Y  I  Y  I  S  E  *  E  D  L  R  R  F  L  L  L  Y  F  *  K  I  C  N  *  L  I  M  E  G  K  K  F  A  V  L  L  C  A  E  D  S  E  Y  V  K  K  K  Y  G  G  Y  F  G  V  F  V  R  M  L  A  E  E  G  E  T  W  D  F  F  R  V  A  H  G  E  F  P  T  D  D  E  I  G  E  F  D  G  F  V  I  T  G  S  C  N  D  A  H  G  N  D  L  W  I  C  K  L  L  N  L  L  K  K  I  D  S  M  K  K  K  V  L  G  I  C  F  G  H  Q  :  I  L  G  R  S  L  G  G  T  I  E  R  A  T  N  G  W  D  I  G  V  T  T  V  N  L  S  T  S  K  Q  F  N  S  L  K  L  P  A  F  L  Q  I  I  E  C  H  R  D  E  :  I  R  E  L  P  P  K  A  E  V  M  A  W  S  N  K  T  G  I  E  M  F  R  Y  G  D  H  I  M  G  I  Q  G  H  P  E  Y  T  K  D  I  L  L  H  L  I  D  R  L  L  Q  H  N  L  I  E  :  E  S  M  A  D  V  A  K  A  K  V  E  E  C  E  P  D  R  E  Q  W  K  K  L  C  I  S  F  L  K  G  K  L  *  L  Q  L  V  K  K  C  K  *  E  M  I  W  C  *  M  N  F  *  T  V  L  G  L  L  N  L  L  D  I  H  Y  M  S  L  S  T  I  L  Y  *  T  F  *  L  L  K  L  I  T  K  </second_frame>
            <third_frame>   K  T  K  L  R  K  I  S  I  S  L  *  T  F  L  *  R  E  N  L  Y  L  S  I  Y  I  Y  I  Y  I  S  V  S  E  R  I  *  E  D  F  F  F  F  I  S  E  K  S  V  I  N  *  *  W  K  E  K  N  L  Q  F  Y  Y  V  Q  R  I  Q  N  T  *  R  R  N  T  G  V  I  S  G  F  S  *  E  C  W  R  R  K  G  K  R  G  T  F  S  G  W  L  M  A  S  F  R  R  M  M  R  S  E  N  S  M  D  L  *  S  P  E  V  A  M  T  R  M  V  M  I  C  G  S  A  S  Y  S  I  C  S  K  K  L  I  Q  *  R  R  K  F  W  V  F  A  L  D  T  R :   Y  *  D  D  H  W  V  A  L  *  R  E  L  L  M  V  G  T  L  V  *  L  L  L  I  Y  Q  R  Q  S  N  S  T  L  S  N  Y  L  H  F  C  K  L  S  S  V  I  A  M  R :   S  V  N  F  H  Q  R  Q  R  *  W  H  G  P  T  K  L  E  L  K  C  L  D  M  V  I  I  *  W  A  F  K  V  T  L  N  T  P  K  T  F  F  S  I  S  S  I  V  F  F  N  T  T  L  L  R :   R  A  W  L  M  W  P  R  Q  R  L  K  S  V  N  Q  T  G  S  N  G  R  N  Y  A  L  A  F  S  R  V  N  C  D  C  N  W  S  K  S  V  N  R  R  *  Y  G  V  R  *  T  F  R  L  F  W  D  F  *  T  Y  *  T  S  I  T  C  P  Y  Q  Q  S  Y  I  K  L  F  N  Y  *  N  *  *  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28012" stop="28326"/>
                    <exon start="30244" stop="30393"/>
                    <exon start="30475" stop="30642"/>
                    <exon start="30901" stop="31002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMEGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDFFRVAHGEFPTDDEIGEFDGFVITGSCNDAHGNDLWICKLLNLLKKIDSMKKKVLGICFGHQILGRSLGGTIERATNGWDIGVTTVNLSTSKQFNSLKLPAFLQIIECHRDEIRELPPKAEVMAWSNKTGIEMFRYGDHIMGIQGHPEYTKDILLHLIDRLLQHNLIEESMADVAKAKVEECEPDREQWKKLCISFLKGKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28869" e_stop="29647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28869" e_stop="29647" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28869" stop="29647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTACGTACATTAATGGAAATTTCAATTTAGGTAATTGTTATTTTGTAAAACTCTTTTCTGTGCTATGCGACTGTTTACTAGTTGGGACATTACTATTTTATATGAAAATCTGCTAACATATTTGGACAAATATTATTCTAATAGTTGCAATTTCCGTGTTACGAAGTTATGTCTTAATTCATCTCTCCCATATGTTGGAAAAAATAAAATTTTCCTTTGTTTTTTTTTCTGGCATAATACATAAATATCATTCATAACTTGTTTTATCTATAAAATCGAATAAATAGATAAATTTATCCTGTGTTTTACATGTATATTATACCGTGTAGGATATATATGTGTACTTATTCTATTTTGCACAAGTTTAAGTATTTAAATGTCAACTAAAGTCAAGTTAAAAAAAATGTATATTTGTGTATTACTTCCAATCCATTTTACTTGTTATTATCCTTAAAAAATAAAATTAAAATTTGGGAGGATTACATGAGAGGACCCTAGTGGTCCAAAAGCAAAAAGAGGTGTGAGTGAGATTTGGGACCATATGCCAAAAACTGAGTGAGAAGTTGGAACTATTCTGGGTTAGAGTTAGTGAATTTTGGATTTTGGTCCCCTCACACTTTCAAATTAATAATTATAGACAGCCCATATATTTTGGGATTCTATTTGGATGGATTCTTGTCACGTGTTCCTCTTTAATTTTTCACCAGTAGTAGTAGTAGCCTTTTGTCATATACTTACTTCACCTAACTATGTACTATATGATAAATGCCGTCCAAT</gDNA_template>
            <first_frame> S  Y  V  H  *  W  K  F  Q  F  R  *  L  L  F  C  K  T  L  F  C  A  M  R  L  F  T  S  W  D  I  T  I  L  Y  E  N  L  L  T  Y  L  D  K  Y  Y  S  N  S  C  N  F  R  V  T  K  L  C  L  N  S  S  L  P  Y  V  G  K  N  K  I  F  L  C  F  F  F  W  H  N  T  *  I  S  F  I  T  C  F  I  Y  K  I  E  *  I  D  K  F  I  L  C  F  T  C  I  L  Y  R  V  G  Y  I  C  V  L  I  L  F  C  T  S  L  S  I  *  M  S  T  K  V  K  L  K  K  M  Y  I  C  V  L  L  P  I  H  F  T  C  Y  Y  P  *  K  I  K  L  K  F  G  R  I  T  *  E  D  P  S  G  P  K  A  K  R  G  V  S  E  I  W  D  H  M  P  K  T  E  *  E  V  G  T  I  L  G  *  S  *  *  I  L  D  F  G  P  L  T  L  S  N  *  *  L  *  T  A  H  I  F  W  D  S  I  W  M  D  S  C  H  V  F  L  F  N  F  S  P  V  V  V  V  A  F  C  H  I  L  T  S  P  N  Y  V  L  Y  D  K  C  R  P   </first_frame>
            <second_frame>  L  T  Y  I  N  G  N  F  N  L  G  N  C  Y  F  V  K  L  F  S  V  L  C  D  C  L  L  V  G  T  L  L  F  Y  M  K  I  C  *  H  I  W  T  N  I  I  L  I  V  A  I  S  V  L  R  S  Y  V  L  I  H  L  S  H  M  L  E  K  I  K  F  S  F  V  F  F  S  G  I  I  H  K  Y  H  S  *  L  V  L  S  I  K  S  N  K  *  I  N  L  S  C  V  L  H  V  Y  Y  T  V  *  D  I  Y  V  Y  L  F  Y  F  A  Q  V  *  V  F  K  C  Q  L  K  S  S  *  K  K  C  I  F  V  Y  Y  F  Q  S  I  L  L  V  I  I  L  K  K  *  N  *  N  L  G  G  L  H  E  R  T  L  V  V  Q  K  Q  K  E  V  *  V  R  F  G  T  I  C  Q  K  L  S  E  K  L  E  L  F  W  V  R  V  S  E  F  W  I  L  V  P  S  H  F  Q  I  N  N  Y  R  Q  P  I  Y  F  G  I  L  F  G  W  I  L  V  T  C  S  S  L  I  F  H  Q  *  *  *  *  P  F  V  I  Y  L  L  H  L  T  M  Y  Y  M  I  N  A  V  Q  </second_frame>
            <third_frame>   L  R  T  L  M  E  I  S  I  *  V  I  V  I  L  *  N  S  F  L  C  Y  A  T  V  Y  *  L  G  H  Y  Y  F  I  *  K  S  A  N  I  F  G  Q  I  L  F  *  *  L  Q  F  P  C  Y  E  V  M  S  *  F  I  S  P  I  C  W  K  K  *  N  F  P  L  F  F  F  L  A  *  Y  I  N  I  I  H  N  L  F  Y  L  *  N  R  I  N  R  *  I  Y  P  V  F  Y  M  Y  I  I  P  C  R  I  Y  M  C  T  Y  S  I  L  H  K  F  K  Y  L  N  V  N  *  S  Q  V  K  K  N  V  Y  L  C  I  T  S  N  P  F  Y  L  L  L  S  L  K  N  K  I  K  I  W  E  D  Y  M  R  G  P  *  W  S  K  S  K  K  R  C  E  *  D  L  G  P  Y  A  K  N  *  V  R  S  W  N  Y  S  G  L  E  L  V  N  F  G  F  W  S  P  H  T  F  K  L  I  I  I  D  S  P  Y  I  L  G  F  Y  L  D  G  F  L  S  R  V  P  L  *  F  F  T  S  S  S  S  S  L  L  S  Y  T  Y  F  T  *  L  C  T  I  *  *  M  P  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28905" stop="29114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFCKTLFCAMRLFTSWDITILYENLLTYLDKYYSNSCNFRVTKLCLNSSLPYVGKNKIFLCFFFWHNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="55341" PGL_stop="62032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55341" e_stop="55724"/>
            <exon e_start="56669" e_stop="56752"/>
            <exon e_start="56839" e_stop="56972"/>
            <exon e_start="58891" e_stop="58998"/>
            <exon e_start="59360" e_stop="59465"/>
            <exon e_start="61408" e_stop="61479"/>
            <exon e_start="61607" e_stop="62032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.065" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55341" e_stop="55724" e_length="384"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55725" i_stop="56668" i_length="944"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56669" e_stop="56752" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.065">
            <gDNA_intron_boundary i_start="56753" i_stop="56838" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56839" e_stop="56972" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56973" i_stop="58890" i_length="1918"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58891" e_stop="58998" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.908">
            <gDNA_intron_boundary i_start="58999" i_stop="59359" i_length="361"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59360" e_stop="59465" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.946">
            <gDNA_intron_boundary i_start="59466" i_stop="61407" i_length="1942"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61408" e_stop="61479" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61480" i_stop="61606" i_length="127"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61607" e_stop="62032" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55341" stop="55724"/>
              <exon start="56669" stop="56752"/>
              <exon start="56839" stop="56972"/>
              <exon start="58891" stop="58998"/>
              <exon start="59360" stop="59465"/>
              <exon start="61408" stop="61479"/>
              <exon start="61607" stop="62032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTAACATGTACGGACGGGAGACGATGAACGCTGCACTTCACCAAGATAGACACCAGCAAACTCAGATCGACGACGACGATGATGACGACGTCGTCGCTGCTGTCGGTGGCGGTGGCAGTGGTGGGGGAGGAATAGAGTCTATGGACAACCCTACTCCTCACATTCGCTACGACCAACATCATCACTCTCATTCTCACGCGCTTCACAACGGCGGCGCCGGCGGTTCTATGGAGATGAATGGTGTGGAAGGTGTTTCTCATAACGCCTTGTATGGTCCTCCTTCCGAAATTGTTCCTACTGCTGGTAGTGGAGCTTCCGATCAGCTTACGCTGTCGTTTCAAGGCGAAGTGTACGTTTTTGATGCCGTTTCACCTGAAAAG : GTTCAGGCGGTGCTGTTACTGTTGGGGGGATACGAAGTCCCTCCTGGTATCCCTGCTGTAAATGTGGTTCCCCAAAGTCAGAGG : GCTTCAGGTGACTTTCCTGGAAGATTAAATCAACCGGAAAGAGCTGCTTCTTTAAATCGTTTTAGGGAAAAGAGGAAAGAACGGTGTTTTGATAAAAAGATCCGCTATACTGTGCGGAAGGAAGTTGCGATGAG : GATGCAGCGCAAGAAAGGTCAGTTTACATCTGCCAAGTCAATACCTGACGAAGTAGGTTCTTCTGCAGATTGGAATGAAGGCTCTGGTCAAGAAGAGCAGGAAACATC : ATGTAGACATTGCAATATTAGTTCGAAATCCACTCCTATGATGCGTCGGGGACCAGCTGGCCCAAGGTCTCTTTGTAATGCATGTGGACTCAAGTGGGCCAATAAG : GGAATTTTAAGAGATCTTTCTAAAGTTCCAGCTCCTGGAACTCAGGACCAAACTGCGAAACCTGGTGAACAG : AGCCATGGTGAACCTAATGGCTCGGATGACATGGCTGCTATCATCACTCCGGATGACAACAACCCAGTGGGGTGACCGCTTGAACTGTGAGGGAGAATCCTTCTCTGCAATTATTGTGGTGGCAGTTGATGTTGAAGTGAGATGAATAATTGAAATTCATCTGTTGTACTATCCGCCAAAATTAGATTGTAAATAGTAAAATATTGTACTCTTAGGCATCCGACATTGTTTCTCGGAGTTTTAGTGTTTTATTCTGGTGTTCAAATGTATAATTGAAATCTGAAACTTGTCCCACGAATCGATACATGCAGGCTTAAAAGTATCTTTAAATAGTTTTTGTTTGCTATATGACTACAAAGGTGGAAGAGCATACTGTCTTTGCATTCTTATCTCTATTTTATAAAAATATACGTAAATTTTACTTTT</gDNA_template>
            <first_frame> R  A  N  M  Y  G  R  E  T  M  N  A  A  L  H  Q  D  R  H  Q  Q  T  Q  I  D  D  D  D  D  D  D  V  V  A  A  V  G  G  G  G  S  G  G  G  G  I  E  S  M  D  N  P  T  P  H  I  R  Y  D  Q  H  H  H  S  H  S  H  A  L  H  N  G  G  A  G  G  S  M  E  M  N  G  V  E  G  V  S  H  N  A  L  Y  G  P  P  S  E  I  V  P  T  A  G  S  G  A  S  D  Q  L  T  L  S  F  Q  G  E  V  Y  V  F  D  A  V  S  P  E  K  :  V  Q  A  V  L  L  L  L  G  G  Y  E  V  P  P  G  I  P  A  V  N  V  V  P  Q  S  Q  R  :  A  S  G  D  F  P  G  R  L  N  Q  P  E  R  A  A  S  L  N  R  F  R  E  K  R  K  E  R  C  F  D  K  K  I  R  Y  T  V  R  K  E  V  A  M  R :   M  Q  R  K  K  G  Q  F  T  S  A  K  S  I  P  D  E  V  G  S  S  A  D  W  N  E  G  S  G  Q  E  E  Q  E  T  S :   C  R  H  C  N  I  S  S  K  S  T  P  M  M  R  R  G  P  A  G  P  R  S  L  C  N  A  C  G  L  K  W  A  N  K  :  G  I  L  R  D  L  S  K  V  P  A  P  G  T  Q  D  Q  T  A  K  P  G  E  Q  :  S  H  G  E  P  N  G  S  D  D  M  A  A  I  I  T  P  D  D  N  N  P  V  G  *  P  L  E  L  *  G  R  I  L  L  C  N  Y  C  G  G  S  *  C  *  S  E  M  N  N  *  N  S  S  V  V  L  S  A  K  I  R  L  *  I  V  K  Y  C  T  L  R  H  P  T  L  F  L  G  V  L  V  F  Y  S  G  V  Q  M  Y  N  *  N  L  K  L  V  P  R  I  D  T  C  R  L  K  S  I  F  K  *  F  L  F  A  I  *  L  Q  R  W  K  S  I  L  S  L  H  S  Y  L  Y  F  I  K  I  Y  V  N  F  T  F </first_frame>
            <second_frame>  E  L  T  C  T  D  G  R  R  *  T  L  H  F  T  K  I  D  T  S  K  L  R  S  T  T  T  M  M  T  T  S  S  L  L  S  V  A  V  A  V  V  G  E  E  *  S  L  W  T  T  L  L  L  T  F  A  T  T  N  I  I  T  L  I  L  T  R  F  T  T  A  A  P  A  V  L  W  R  *  M  V  W  K  V  F  L  I  T  P  C  M  V  L  L  P  K  L  F  L  L  L  V  V  E  L  P  I  S  L  R  C  R  F  K  A  K  C  T  F  L  M  P  F  H  L  K  R :   F  R  R  C  C  Y  C  W  G  D  T  K  S  L  L  V  S  L  L  *  M  W  F  P  K  V  R  G :   L  Q  V  T  F  L  E  D  *  I  N  R  K  E  L  L  L  *  I  V  L  G  K  R  G  K  N  G  V  L  I  K  R  S  A  I  L  C  G  R  K  L  R  *   : G  C  S  A  R  K  V  S  L  H  L  P  S  Q  Y  L  T  K  *  V  L  L  Q  I  G  M  K  A  L  V  K  K  S  R  K  H   : H  V  D  I  A  I  L  V  R  N  P  L  L  *  C  V  G  D  Q  L  A  Q  G  L  F  V  M  H  V  D  S  S  G  P  I  R :   E  F  *  E  I  F  L  K  F  Q  L  L  E  L  R  T  K  L  R  N  L  V  N  R :   A  M  V  N  L  M  A  R  M  T  W  L  L  S  S  L  R  M  T  T  T  Q  W  G  D  R  L  N  C  E  G  E  S  F  S  A  I  I  V  V  A  V  D  V  E  V  R  *  I  I  E  I  H  L  L  Y  Y  P  P  K  L  D  C  K  *  *  N  I  V  L  L  G  I  R  H  C  F  S  E  F  *  C  F  I  L  V  F  K  C  I  I  E  I  *  N  L  S  H  E  S  I  H  A  G  L  K  V  S  L  N  S  F  C  L  L  Y  D  Y  K  G  G  R  A  Y  C  L  C  I  L  I  S  I  L  *  K  Y  T  *  I  L  L   </second_frame>
            <third_frame>   S  *  H  V  R  T  G  D  D  E  R  C  T  S  P  R  *  T  P  A  N  S  D  R  R  R  R  *  *  R  R  R  R  C  C  R  W  R  W  Q  W  W  G  R  N  R  V  Y  G  Q  P  Y  S  S  H  S  L  R  P  T  S  S  L  S  F  S  R  A  S  Q  R  R  R  R  R  F  Y  G  D  E  W  C  G  R  C  F  S  *  R  L  V  W  S  S  F  R  N  C  S  Y  C  W  *  W  S  F  R  S  A  Y  A  V  V  S  R  R  S  V  R  F  *  C  R  F  T  *  K   : G  S  G  G  A  V  T  V  G  G  I  R  S  P  S  W  Y  P  C  C  K  C  G  S  P  K  S  E   : G  F  R  *  L  S  W  K  I  K  S  T  G  K  S  C  F  F  K  S  F  *  G  K  E  E  R  T  V  F  *  *  K  D  P  L  Y  C  A  E  G  S  C  D  E  :  D  A  A  Q  E  R  S  V  Y  I  C  Q  V  N  T  *  R  S  R  F  F  C  R  L  E  *  R  L  W  S  R  R  A  G  N  I  :  M  *  T  L  Q  Y  *  F  E  I  H  S  Y  D  A  S  G  T  S  W  P  K  V  S  L  *  C  M  W  T  Q  V  G  Q  *   : G  N  F  K  R  S  F  *  S  S  S  S  W  N  S  G  P  N  C  E  T  W  *  T   : E  P  W  *  T  *  W  L  G  *  H  G  C  Y  H  H  S  G  *  Q  Q  P  S  G  V  T  A  *  T  V  R  E  N  P  S  L  Q  L  L  W  W  Q  L  M  L  K  *  D  E  *  L  K  F  I  C  C  T  I  R  Q  N  *  I  V  N  S  K  I  L  Y  S  *  A  S  D  I  V  S  R  S  F  S  V  L  F  W  C  S  N  V  *  L  K  S  E  T  C  P  T  N  R  Y  M  Q  A  *  K  Y  L  *  I  V  F  V  C  Y  M  T  T  K  V  E  E  H  T  V  F  A  F  L  S  L  F  Y  K  N  I  R  K  F  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55341" stop="55724"/>
                    <exon start="56669" stop="56752"/>
                    <exon start="56839" stop="56972"/>
                    <exon start="58891" stop="58998"/>
                    <exon start="59360" stop="59465"/>
                    <exon start="61408" stop="61479"/>
                    <exon start="61607" stop="61681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RANMYGRETMNAALHQDRHQQTQIDDDDDDDVVAAVGGGGSGGGGIESMDNPTPHIRYDQHHHSHSHALHNGGAGGSMEMNGVEGVSHNALYGPPSEIVPTAGSGASDQLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPPGIPAVNVVPQSQRASGDFPGRLNQPERAASLNRFREKRKERCFDKKIRYTVRKEVAMRMQRKKGQFTSAKSIPDEVGSSADWNEGSGQEEQETSCRHCNISSKSTPMMRRGPAGPRSLCNACGLKWANKGILRDLSKVPAPGTQDQTAKPGEQSHGEPNGSDDMAAIITPDDNNPVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="80064" PGL_stop="69181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80064" e_stop="79505"/>
            <exon e_start="78588" e_stop="78306"/>
            <exon e_start="78224" e_stop="78196"/>
            <exon e_start="78102" e_stop="78001"/>
            <exon e_start="75744" e_stop="75676"/>
            <exon e_start="75591" e_stop="75532"/>
            <exon e_start="74659" e_stop="74546"/>
            <exon e_start="74362" e_stop="74314"/>
            <exon e_start="74149" e_stop="74040"/>
            <exon e_start="73457" e_stop="73365"/>
            <exon e_start="73240" e_stop="73148"/>
            <exon e_start="73067" e_stop="72930"/>
            <exon e_start="72554" e_stop="72423"/>
            <exon e_start="72306" e_stop="72211"/>
            <exon e_start="72074" e_stop="72032"/>
            <exon e_start="71678" e_stop="71530"/>
            <exon e_start="71433" e_stop="71287"/>
            <exon e_start="70524" e_stop="70472"/>
            <exon e_start="70258" e_stop="70207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.855" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.964"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.922"/>
          <exon-intron don_prob="0.161" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.586" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.951" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.751" e_score="0.986"/>
          <exon-intron don_prob="0.926" acc_prob="0.981" e_score="0.905"/>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="0.943"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80064" e_stop="79505" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.855" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79504" i_stop="78589" i_length="916"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="78588" e_stop="78306" e_length="283"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="78305" i_stop="78225" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78224" e_stop="78196" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78195" i_stop="78103" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78102" e_stop="78001" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="78000" i_stop="75745" i_length="2256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75744" e_stop="75676" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="75675" i_stop="75592" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75591" e_stop="75532" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.904" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75531" i_stop="74660" i_length="872"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74659" e_stop="74546" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="74545" i_stop="74363" i_length="183"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74362" e_stop="74314" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.534">
            <gDNA_intron_boundary i_start="74313" i_stop="74150" i_length="164"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74149" e_stop="74040" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.729" acc_prob="0.993">
            <gDNA_intron_boundary i_start="74039" i_stop="73458" i_length="582"/>
          </intron>
          <exon e_serial="10" e_score="0.922">
            <gDNA_exon_boundary e_start="73457" e_stop="73365" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73364" i_stop="73241" i_length="124"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="73240" e_stop="73148" e_length="93"/>
          </exon>
          <intron i_serial="11" don_prob="0.161" acc_prob="0.961">
            <gDNA_intron_boundary i_start="73147" i_stop="73068" i_length="80"/>
          </intron>
          <exon e_serial="12" e_score="0.986">
            <gDNA_exon_boundary e_start="73067" e_stop="72930" e_length="138"/>
          </exon>
          <intron i_serial="12" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="72554" e_stop="72423" e_length="132"/>
          </exon>
          <intron i_serial="13" don_prob="0.586" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72422" i_stop="72307" i_length="116"/>
          </intron>
          <exon e_serial="14" e_score="0.990">
            <gDNA_exon_boundary e_start="72306" e_stop="72211" e_length="96"/>
          </exon>
          <intron i_serial="14" don_prob="0.920" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="72074" e_stop="72032" e_length="43"/>
          </exon>
          <intron i_serial="15" don_prob="0.951" acc_prob="0.662">
            <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353"/>
          </intron>
          <exon e_serial="16" e_score="0.986">
            <gDNA_exon_boundary e_start="71678" e_stop="71530" e_length="149"/>
          </exon>
          <intron i_serial="16" don_prob="0.982" acc_prob="0.751">
            <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96"/>
          </intron>
          <exon e_serial="17" e_score="0.905">
            <gDNA_exon_boundary e_start="71433" e_stop="71287" e_length="147"/>
          </exon>
          <intron i_serial="17" don_prob="0.926" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762"/>
          </intron>
          <exon e_serial="18" e_score="0.943">
            <gDNA_exon_boundary e_start="70524" e_stop="70472" e_length="53"/>
          </exon>
          <intron i_serial="18" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213"/>
          </intron>
          <exon e_serial="19" e_score="0.981">
            <gDNA_exon_boundary e_start="70258" e_stop="70207" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80064" stop="79505"/>
              <exon start="78588" stop="78308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78366" stop="78306"/>
              <exon start="78224" stop="78196"/>
              <exon start="78102" stop="78001"/>
              <exon start="75744" stop="75676"/>
              <exon start="75591" stop="75532"/>
              <exon start="74659" stop="74546"/>
              <exon start="74362" stop="74314"/>
              <exon start="74149" stop="74040"/>
              <exon start="73457" stop="73368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73391" stop="73365"/>
              <exon start="73240" stop="73148"/>
              <exon start="73067" stop="72930"/>
              <exon start="72554" stop="72423"/>
              <exon start="72306" stop="72211"/>
              <exon start="72074" stop="72032"/>
              <exon start="71678" stop="71536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACATTTCAGACATGATAACAACATACTGAATTTGGGGAAAACGAGTAACGATTCTCGCTTTGTTTCTTGGGCAGTAAGACAGATTTCCGCTTTCTTTTCTACGCAATCCATGAGACTTTTCCTCATTCAAGCCTCAACAATCCACTTCTAGGGTTTTACTATCGTCAATCTCCGGTGATCTTGTATAGTATTCTAGAATTTAACATGGCGGAAGAAATATCACCGTCAAACTCTCCCGATGCGGCGTCGGCGGCGTCATTGGGTCATTCAGTAATACCTATAGTGAACAAGCTACAAGATATATTCGCACAGCTAGGAAGTCAATCCACGATTGAGCTGCCACAGGTTGCTGTTGTAGGGAGTCAAAGTAGTGGCAAATCAAGTGTTCTTGAGGCGCTTGTAGGTCGAGATTTCTTGCCTAGAGGGTCTGATATATGTACTAGGCGACCTCTTGTTCTACAGCTCCTTAAGCATAATTCTGATGAGGAATACGGAGAGTTCTTGCACCTTCCTGAGAAACGTTTCTATGATTTTAATGAAATTCGTTGGGAGATTCAG : GCGGAGACAGAAAGGGAAGCAGGAGGAAATAAAGGTGTCTCGGACAAGCAGATACGGTTGAAGATTTACTCACCAAATGTTCTTGATATTACTCTAGTGGATTTGCCTGGCATAACAAAGGTGCCTGTTGGTGATCAACCCTCTGATATTGAAGCTCGGATCAGAACTATGATCATGTCGTATATTAAGGTCCCAAGCTGCTTAATATTGGCTGTAACACCAGCCAATTCAGACTTAGCCAACTCAGATGCTCTTCAGATTGCTGGGAATGCTGACCCTGATG : GTTATCGAACTATTGGCGTCATCACAAAG : TTGGACATCATGGATAGGGGTACTGATGCTCGTAACTTTTTACTTGGAAAAGTGATTCCCCTTCGCCTTGGTTATGTTGGAATAGTGAATCGTAATCAGGAG : GATATTACGATGAATCGGAGTATTAAGGATGCACTTGTAGCTGAGGAGAAGTTCTTCCGCAACCGTCCT : GTATATAGTGATCTTGCTGATCGCTGTGGTGTACCTCAATTGGCTAAAAAGTTGAACCAG : ATTTTGGTGCAACACATCAAAAAACTCCTTCCAGGATTGAAATCACGCATTAGTGCTGGACTTGTGTCTGTCGCAAAGGAGCATGCTAGCTATGGGGAGATCACCGAGTCAAAG : GCTGGTATGGGTGCTCTCCTTCTGAACATTCTTTCCAAGTACAGTGAAG : CATTCTCTTCAATGATAGAAGGCAAAAATGAAGAAATGTCAACTTCTGAGCTTTCTGGTGGAGCAAGGATTCATTACATTTTTCAGAACATATTTGTGAAAAGTTTGGAG : GAAGTTGATCCTTGTGAAGATTTAAGCGATGATGACATCCGAACTGCCATTCAAAATGCAACCGGTGCCAAATCTGCATTATTTGTGCCAGAG : GTCCCTTTTGAAGTTCTCATCCGAAGGCAAATAGCACGATTAATGGACCCGAGTTTTCAATGTGCACGATTTATATATGATGAGCTGGTTAAA : ATGAGCCATCGTTGTATGGTCAATGAGTTGCAACGTTTTCCAATTTTGAGAAAGCGCATGGATGAGGTTATTGGAAATTTTTTGCGTGAAGGACTGGGACCTTCAGAAGTAATGATTGGACACCTTATTGAGATGGAG : ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAAGTAAAATTTTCATTTGCT : GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG : GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG : GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG : CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG : GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG : AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAG</gDNA_template>
            <first_frame> T  H  F  R  H  D  N  N  I  L  N  L  G  K  T  S  N  D  S  R  F  V  S  W  A  V  R  Q  I  S  A  F  F  S  T  Q  S  M  R  L  F  L  I  Q  A  S  T  I  H  F  *  G  F  T  I  V  N  L  R  *  S  C  I  V  F  *  N  L  T  W  R  K  K  Y  H  R  Q  T  L  P  M  R  R  R  R  R  H  W  V  I  Q  *  Y  L  *  *  T  S  Y  K  I  Y  S  H  S  *  E  V  N  P  R  L  S  C  H  R  L  L  L  *  G  V  K  V  V  A  N  Q  V  F  L  R  R  L  *  V  E  I  S  C  L  E  G  L  I  Y  V  L  G  D  L  L  F  Y  S  S  L  S  I  I  L  M  R  N  T  E  S  S  C  T  F  L  R  N  V  S  M  I  L  M  K  F  V  G  R  F  R :   R  R  Q  K  G  K  Q  E  E  I  K  V  S  R  T  S  R  Y  G  *  R  F  T  H  Q  M  F  L  I  L  L  *  W  I  C  L  A  *  Q  R  C  L  L  V  I  N  P  L  I  L  K  L  G  S  E  L  *  S  C  R  I  L  R  S  Q  A  A  *  Y  W  L  *  H  Q  P  I  Q  T  *  P  T  Q  M  L  F  R  L  L  G  M  L  T  L  M  :  V  I  E  L  L  A  S  S  Q  S :   W  T  S  W  I  G  V  L  M  L  V  T  F  Y  L  E  K  *  F  P  F  A  L  V  M  L  E  *  *  I  V  I  R  R :   I  L  R  *  I  G  V  L  R  M  H  L  *  L  R  R  S  S  S  A  T  V  L :   Y  I  V  I  L  L  I  A  V  V  Y  L  N  W  L  K  S  *  T  R :   F  W  C  N  T  S  K  N  S  F  Q  D  *  N  H  A  L  V  L  D  L  C  L  S  Q  R  S  M  L  A  M  G  R  S  P  S  Q  R :   L  V  W  V  L  S  F  *  T  F  F  P  S  T  V  K  :  H  S  L  Q  *  *  K  A  K  M  K  K  C  Q  L  L  S  F  L  V  E  Q  G  F  I  T  F  F  R  T  Y  L  *  K  V  W  R :   K  L  I  L  V  K  I  *  A  M  M  T  S  E  L  P  F  K  M  Q  P  V  P  N  L  H  Y  L  C  Q  R :   S  L  L  K  F  S  S  E  G  K  *  H  D  *  W  T  R  V  F  N  V  H  D  L  Y  M  M  S  W  L  K :   *  A  I  V  V  W  S  M  S  C  N  V  F  Q  F  *  E  S  A  W  M  R  L  L  E  I  F  C  V  K  D  W  D  L  Q  K  *  *  L  D  T  L  L  R  W  R :   W  I  T  *  I  L  H  I  Q  I  L  L  V  G  L  K  L  M  R  W  H  Y  S  R  S  S  P  L  G  L  L  H  R  I  R  G  R  K  *  N  F  H  L  L :   M  A  *  I  *  K  K  H  Q  P  L  K  E  V  *  N  H  V  L  Y  L  P  D  Q  L  V  V  L  S  L  I  R :   L  F  G  L  L  Q  K  L  R  K  L  Q  H  Q  :  D  Q  M  L  V  Q  V  G  E  Y  H  Q  Y  L  V  A  R  T  I  V  H  L  *  K  T  I  S  L  T  S  H  S  V  I  L  H  *  A  W  I  M  L  S  Q  *  S  T  *  E  S :   P  Q  V  S  *  G  L  Q  K  L  I  Q  I  R  K  L  L  K  L  P  L  Q  N  C  Y  C  G  H  T  M  T  L  S  G  R  I  L  K  T  R  Y  L  K  Q  S  C  I  F  W :   *  I  T  P  K  E  I  F  T  M  C  S  S  R  N  S  T   : E  K  T  S  S  K  K  C  C  K  N  L  M  R  *  P  *   </first_frame>
            <second_frame>  H  I  S  D  M  I  T  T  Y  *  I  W  G  K  R  V  T  I  L  A  L  F  L  G  Q  *  D  R  F  P  L  S  F  L  R  N  P  *  D  F  S  S  F  K  P  Q  Q  S  T  S  R  V  L  L  S  S  I  S  G  D  L  V  *  Y  S  R  I  *  H  G  G  R  N  I  T  V  K  L  S  R  C  G  V  G  G  V  I  G  S  F  S  N  T  Y  S  E  Q  A  T  R  Y  I  R  T  A  R  K  S  I  H  D  *  A  A  T  G  C  C  C  R  E  S  K  *  W  Q  I  K  C  S  *  G  A  C  R  S  R  F  L  A  *  R  V  *  Y  M  Y  *  A  T  S  C  S  T  A  P  *  A  *  F  *  *  G  I  R  R  V  L  A  P  S  *  E  T  F  L  *  F  *  *  N  S  L  G  D  S   : G  G  D  R  K  G  S  R  R  K  *  R  C  L  G  Q  A  D  T  V  E  D  L  L  T  K  C  S  *  Y  Y  S  S  G  F  A  W  H  N  K  G  A  C  W  *  S  T  L  *  Y  *  S  S  D  Q  N  Y  D  H  V  V  Y  *  G  P  K  L  L  N  I  G  C  N  T  S  Q  F  R  L  S  Q  L  R  C  S  S  D  C  W  E  C  *  P  *  W :   L  S  N  Y  W  R  H  H  K   : V  G  H  H  G  *  G  Y  *  C  S  *  L  F  T  W  K  S  D  S  P  S  P  W  L  C  W  N  S  E  S  *  S  G   : G  Y  Y  D  E  S  E  Y  *  G  C  T  C  S  *  G  E  V  L  P  Q  P  S   : C  I  *  *  S  C  *  S  L  W  C  T  S  I  G  *  K  V  E  P   : D  F  G  A  T  H  Q  K  T  P  S  R  I  E  I  T  H  *  C  W  T  C  V  C  R  K  G  A  C  *  L  W  G  D  H  R  V  K   : G  W  Y  G  C  S  P  S  E  H  S  F  Q  V  Q  *  S :   I  L  F  N  D  R  R  Q  K  *  R  N  V  N  F  *  A  F  W  W  S  K  D  S  L  H  F  S  E  H  I  C  E  K  F  G   : G  S  *  S  L  *  R  F  K  R  *  *  H  P  N  C  H  S  K  C  N  R  C  Q  I  C  I  I  C  A  R   : G  P  F  *  S  S  H  P  K  A  N  S  T  I  N  G  P  E  F  S  M  C  T  I  Y  I  *  *  A  G  *   : N  E  P  S  L  Y  G  Q  *  V  A  T  F  S  N  F  E  K  A  H  G  *  G  Y  W  K  F  F  A  *  R  T  G  T  F  R  S  N  D  W  T  P  Y  *  D  G   : D  G  L  H  K  Y  F  T  S  K  F  Y  W  W  D  *  S  S  *  D  G  I  T  A  G  Q  V  L  *  D  C  C  T  E  S  E  A  E  S  K  I  F  I  C   : *  W  R  R  F  R  K  S  T  N  L  *  K  K  S  K  I  T  C  Y  T  C  Q  I  S  W  W  F  C  P  *  S   : G  C  S  A  C  S  R  S  *  E  N  Y  S  I  R :   I  K  C  W  F  K  L  G  N  I  I  N  I  W  W  L  G  Q  S  C  I  C  K  R  Q  F  H  *  Q  A  I  Q  *  Y  C  T  E  H  G  S  C  F  L  N  D  P  L  E  R   : A  P  K  C  L  E  A  F  R  N  S  F  R  S  G  N  Y  *  N  C  H  Y  K  T  V  I  A  V  I  L  *  R  C  Q  E  E  Y  *  R  L  G  T  *  S  N  H  A  F  S   : G  K  S  H  Q  K  R  S  S  Q  C  V  H  Q  E  T  L  Q  :  R  K  P  P  R  R  N  V  A  R  T  *  *  D  S  H  E  </second_frame>
            <third_frame>   T  F  Q  T  *  *  Q  H  T  E  F  G  E  N  E  *  R  F  S  L  C  F  L  G  S  K  T  D  F  R  F  L  F  Y  A  I  H  E  T  F  P  H  S  S  L  N  N  P  L  L  G  F  Y  Y  R  Q  S  P  V  I  L  Y  S  I  L  E  F  N  M  A  E  E  I  S  P  S  N  S  P  D  A  A  S  A  A  S  L  G  H  S  V  I  P  I  V  N  K  L  Q  D  I  F  A  Q  L  G  S  Q  S  T  I  E  L  P  Q  V  A  V  V  G  S  Q  S  S  G  K  S  S  V  L  E  A  L  V  G  R  D  F  L  P  R  G  S  D  I  C  T  R  R  P  L  V  L  Q  L  L  K  H  N  S  D  E  E  Y  G  E  F  L  H  L  P  E  K  R  F  Y  D  F  N  E  I  R  W  E  I  Q  :  A  E  T  E  R  E  A  G  G  N  K  G  V  S  D  K  Q  I  R  L  K  I  Y  S  P  N  V  L  D  I  T  L  V  D  L  P  G  I  T  K  V  P  V  G  D  Q  P  S  D  I  E  A  R  I  R  T  M  I  M  S  Y  I  K  V  P  S  C  L  I  L  A  V  T  P  A  N  S  D  L  A  N  S  D  A  L  Q  I  A  G  N  A  D  P  D   : G  Y  R  T  I  G  V  I  T  K  :  L  D  I  M  D  R  G  T  D  A  R  N  F  L  L  G  K  V  I  P  L  R  L  G  Y  V  G  I  V  N  R  N  Q  E  :  D  I  T  M  N  R  S  I  K  D  A  L  V  A  E  E  K  F  F  R  N  R  P  :  V  Y  S  D  L  A  D  R  C  G  V  P  Q  L  A  K  K  L  N  Q  :  I  L  V  Q  H  I  K  K  L  L  P  G  L  K  S  R  I  S  A  G  L  V  S  V  A  K  E  H  A  S  Y  G  E  I  T  E  S  K  :  A  G  M  G  A  L  L  L  N  I  L  S  K  Y  S  E   : A  F  S  S  M  I  E  G  K  N  E  E  M  S  T  S  E  L  S  G  G  A  R  I  H  Y  I  F  Q  N  I  F  V  K  S  L  E  :  E  V  D  P  C  E  D  L  S  D  D  D  I  R  T  A  I  Q  N  A  T  G  A  K  S  A  L  F  V  P  E  :  V  P  F  E  V  L  I  R  R  Q  I  A  R  L  M  D  P  S  F  Q  C  A  R  F  I  Y  D  E  L  V  K  :  M  S  H  R  C  M  V  N  E  L  Q  R  F  P  I  L  R  K  R  M  D  E  V  I  G  N  F  L  R  E  G  L  G  P  S  E  V  M  I  G  H  L  I  E  M  E  :  M  D  Y  I  N  T  S  H  P  N  F  I  G  G  T  K  A  H  E  M  A  L  Q  Q  V  K  S  S  R  I  A  A  P  N  P  R  Q  K  V  K  F  S  F  A  :  D  G  V  D  L  E  K  A  P  T  S  E  R  S  L  K  S  R  A  I  L  A  R  S  V  G  G  F  V  P  D  Q  :  V  V  R  P  A  P  E  V  E  K  T  T  A  S   : G  S  N  V  G  S  S  W  G  I  S  S  I  F  G  G  S  D  N  R  A  S  V  K  D  N  F  I  N  K  P  F  S  D  T  A  L  S  M  D  H  A  F  S  M  I  H  L  R  E  :  P  P  S  V  L  R  P  S  E  T  H  S  D  Q  E  T  I  E  I  A  I  T  K  L  L  L  R  S  Y  Y  D  V  V  R  K  N  I  E  D  S  V  P  K  A  I  M  H  F  L  :  V  N  H  T  K  R  D  L  H  N  V  F  I  K  K  L  Y  R :   E  N  L  L  E  E  M  L  Q  E  P  D  E  I  A  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80014" stop="79505"/>
                    <exon start="78588" stop="78306"/>
                    <exon start="78224" stop="78196"/>
                    <exon start="78102" stop="78001"/>
                    <exon start="75744" stop="75676"/>
                    <exon start="75591" stop="75532"/>
                    <exon start="74659" stop="74546"/>
                    <exon start="74362" stop="74314"/>
                    <exon start="74149" stop="74040"/>
                    <exon start="73457" stop="73365"/>
                    <exon start="73240" stop="73148"/>
                    <exon start="73067" stop="72930"/>
                    <exon start="72554" stop="72423"/>
                    <exon start="72306" stop="72211"/>
                    <exon start="72074" stop="72032"/>
                    <exon start="71678" stop="71530"/>
                    <exon start="71433" stop="71287"/>
                    <exon start="70524" stop="70472"/>
                    <exon start="70258" stop="70207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2322</number_coding_nucleotides>
                  <number_encoded_amino_acids>774</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSLCFLGSKTDFRFLFYAIHETFPHSSLNNPLLGFYYRQSPVILYSILEFNMAEEISPSNSPDAASAASLGHSVIPIVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGSDICTRRPLVLQLLKHNSDEEYGEFLHLPEKRFYDFNEIRWEIQAETEREAGGNKGVSDKQIRLKIYSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKVPSCLILAVTPANSDLANSDALQIAGNADPDGYRTIGVITKLDIMDRGTDARNFLLGKVIPLRLGYVGIVNRNQEDITMNRSIKDALVAEEKFFRNRPVYSDLADRCGVPQLAKKLNQILVQHIKKLLPGLKSRISAGLVSVAKEHASYGEITESKAGMGALLLNILSKYSEAFSSMIEGKNEEMSTSELSGGARIHYIFQNIFVKSLEEVDPCEDLSDDDIRTAIQNATGAKSALFVPEVPFEVLIRRQIARLMDPSFQCARFIYDELVKMSHRCMVNELQRFPILRKRMDEVIGNFLREGLGPSEVMIGHLIEMEMDYINTSHPNFIGGTKAHEMALQQVKSSRIAAPNPRQKVKFSFADGVDLEKAPTSERSLKSRAILARSVGGFVPDQVVRPAPEVEKTTASGSNVGSSWGISSIFGGSDNRASVKDNFINKPFSDTALSMDHAFSMIHLREPPSVLRPSETHSDQETIEIAITKLLLRSYYDVVRKNIEDSVPKAIMHFLVNHTKRDLHNVFIKKLYRENLLEEMLQEPDEIAMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72947" e_stop="72930"/>
            <exon e_start="72554" e_stop="72441"/>
            <exon e_start="72306" e_stop="72211"/>
            <exon e_start="72074" e_stop="72032"/>
            <exon e_start="71678" e_stop="71530"/>
            <exon e_start="71433" e_stop="71287"/>
            <exon e_start="70524" e_stop="70472"/>
            <exon e_start="70258" e_stop="70159"/>
            <exon e_start="69822" e_stop="69181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.944"/>
          <exon-intron don_prob="0.712" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="72947" e_stop="72930" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72929" i_stop="72555" i_length="375"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72554" e_stop="72441" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.712" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72440" i_stop="72307" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72306" e_stop="72211" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72210" i_stop="72075" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72074" e_stop="72032" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.662">
            <gDNA_intron_boundary i_start="72031" i_stop="71679" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71678" e_stop="71530" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.751">
            <gDNA_intron_boundary i_start="71529" i_stop="71434" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71433" e_stop="71287" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71286" i_stop="70525" i_length="762"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70472" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70471" i_stop="70259" i_length="213"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70258" e_stop="70159" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="70158" i_stop="69823" i_length="336"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69822" e_stop="69181" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72947" stop="72930"/>
              <exon start="72554" stop="72441"/>
              <exon start="72306" stop="72211"/>
              <exon start="72074" stop="72032"/>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70159"/>
              <exon start="69822" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71678" stop="71530"/>
              <exon start="71433" stop="71287"/>
              <exon start="70524" stop="70472"/>
              <exon start="70258" stop="70207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTTATTGAGATGGAG : ATGGATTACATAAATACTTCACATCCAAATTTTATTGGTGGGACTAAAGCTCATGAGATGGCATTACAGCAGGTCAAGTCCTCTAGGATTGCTGCACCGAATCCGAGGCAGAAA : GATGGCGTAGATTTAGAAAAAGCACCAACCTCTGAAAGAAGTCTAAAATCACGTGCTATACTTGCCAGATCAGTTGGTGGTTTTGTCCCTGATCAG : GTTGTTCGGCCTGCTCCAGAAGTTGAGAAAACTACAGCATCAG : GATCAAATGTTGGTTCAAGTTGGGGAATATCATCAATATTTGGTGGCTCGGACAATCGTGCATCTGTAAAAGACAATTTCATTAACAAGCCATTCAGTGATACTGCACTGAGCATGGATCATGCTTTCTCAATGATCCACTTGAGAGAG : CCCCCAAGTGTCTTGAGGCCTTCAGAAACTCATTCAGATCAGGAAACTATTGAAATTGCCATTACAAAACTGTTATTGCGGTCATACTATGACGTTGTCAGGAAGAATATTGAAGACTCGGTACCTAAAGCAATCATGCATTTTCTG : GTAAATCACACCAAAAGAGATCTTCACAATGTGTTCATCAAGAAACTCTACAG : AGAAAACCTCCTCGAAGAAATGTTGCAAGAACCTGATGAGATAGCCATGAAGAGAAAGCGTACACGTGAGACACTTCGTGTTCTTCAGCAAGCTTTCAAG : ACATTGGAGGAGTTACCACTTGATGCTGAGACAGTTGAAAGGGGTTATAGCTTGGGTACTGATCTGACAGGCCTTCCAAAGATTCACGGGCTTCCATCATCATCAATGTACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATCCCATTCAGGTGAGCTACAGTTACCAATGTATGGTGGTGTAGATTCAAACGGTGGTGGGCATAATGCTGGTATTTATCCAACAGTAGGTGTATAAGAGACTCAATAGATGCAGGGTTTGATCATTCACGAGTAATTTATTTGCTCTCTCCACCATCATTGCAAAACCCGTCTCTGGTGCAGTGGAGTGCTACTATTTTTTGTCATGGGCAATGTTTTGCTGAGCTGATCGCTATTGGCTTTTACCCACTTACTGTCTATTTCTATGTCAACTATAAATTCATTGTTCGTAGAAGCTGTACGAAATAAGAGGGGACTTTTCGTCTTTATAGGAAGAGGCTAGTTTTGTTGCCTTTCGTTATGATAGTTGGCAATTTATTTTCTAGCCGCCAATTTTTGAGTTCGATACTTCATTTGCTTTCTCAATTTTGTCAAATGTGATAGTAGGAAATATCATCACTTGTGT</gDNA_template>
            <first_frame> H  L  I  E  M  E  :  M  D  Y  I  N  T  S  H  P  N  F  I  G  G  T  K  A  H  E  M  A  L  Q  Q  V  K  S  S  R  I  A  A  P  N  P  R  Q  K  :  D  G  V  D  L  E  K  A  P  T  S  E  R  S  L  K  S  R  A  I  L  A  R  S  V  G  G  F  V  P  D  Q  :  V  V  R  P  A  P  E  V  E  K  T  T  A  S   : G  S  N  V  G  S  S  W  G  I  S  S  I  F  G  G  S  D  N  R  A  S  V  K  D  N  F  I  N  K  P  F  S  D  T  A  L  S  M  D  H  A  F  S  M  I  H  L  R  E  :  P  P  S  V  L  R  P  S  E  T  H  S  D  Q  E  T  I  E  I  A  I  T  K  L  L  L  R  S  Y  Y  D  V  V  R  K  N  I  E  D  S  V  P  K  A  I  M  H  F  L  :  V  N  H  T  K  R  D  L  H  N  V  F  I  K  K  L  Y  R :   E  N  L  L  E  E  M  L  Q  E  P  D  E  I  A  M  K  R  K  R  T  R  E  T  L  R  V  L  Q  Q  A  F  K  :  T  L  E  E  L  P  L  D  A  E  T  V  E  R  G  Y  S  L  G  T  D  L  T  G  L  P  K  I  H  G  L  P  S  S  S  M  Y  T  T  S  S  G  S  T  G  S  H  T  S  S  P  K  S  S  R  L  R  N  A  S  H  S  G  E  L  Q  L  P  M  Y  G  G  V  D  S  N  G  G  G  H  N  A  G  I  Y  P  T  V  G  V  *  E  T  Q  *  M  Q  G  L  I  I  H  E  *  F  I  C  S  L  H  H  H  C  K  T  R  L  W  C  S  G  V  L  L  F  F  V  M  G  N  V  L  L  S  *  S  L  L  A  F  T  H  L  L  S  I  S  M  S  T  I  N  S  L  F  V  E  A  V  R  N  K  R  G  L  F  V  F  I  G  R  G  *  F  C  C  L  S  L  *  *  L  A  I  Y  F  L  A  A  N  F  *  V  R  Y  F  I  C  F  L  N  F  V  K  C  D  S  R  K  Y  H  H  L  C </first_frame>
            <second_frame>  T  L  L  R  W  R :   W  I  T  *  I  L  H  I  Q  I  L  L  V  G  L  K  L  M  R  W  H  Y  S  R  S  S  P  L  G  L  L  H  R  I  R  G  R  K :   M  A  *  I  *  K  K  H  Q  P  L  K  E  V  *  N  H  V  L  Y  L  P  D  Q  L  V  V  L  S  L  I  R :   L  F  G  L  L  Q  K  L  R  K  L  Q  H  Q  :  D  Q  M  L  V  Q  V  G  E  Y  H  Q  Y  L  V  A  R  T  I  V  H  L  *  K  T  I  S  L  T  S  H  S  V  I  L  H  *  A  W  I  M  L  S  Q  *  S  T  *  E  S :   P  Q  V  S  *  G  L  Q  K  L  I  Q  I  R  K  L  L  K  L  P  L  Q  N  C  Y  C  G  H  T  M  T  L  S  G  R  I  L  K  T  R  Y  L  K  Q  S  C  I  F  W :   *  I  T  P  K  E  I  F  T  M  C  S  S  R  N  S  T   : E  K  T  S  S  K  K  C  C  K  N  L  M  R  *  P  *  R  E  S  V  H  V  R  H  F  V  F  F  S  K  L  S  R :   H  W  R  S  Y  H  L  M  L  R  Q  L  K  G  V  I  A  W  V  L  I  *  Q  A  F  Q  R  F  T  G  F  H  H  H  Q  C  T  L  Q  A  V  A  Q  L  V  H  I  P  V  L  Q  R  A  L  D  C  A  M  H  P  I  Q  V  S  Y  S  Y  Q  C  M  V  V  *  I  Q  T  V  V  G  I  M  L  V  F  I  Q  Q  *  V  Y  K  R  L  N  R  C  R  V  *  S  F  T  S  N  L  F  A  L  S  T  I  I  A  K  P  V  S  G  A  V  E  C  Y  Y  F  L  S  W  A  M  F  C  *  A  D  R  Y  W  L  L  P  T  Y  C  L  F  L  C  Q  L  *  I  H  C  S  *  K  L  Y  E  I  R  G  D  F  S  S  L  *  E  E  A  S  F  V  A  F  R  Y  D  S  W  Q  F  I  F  *  P  P  I  F  E  F  D  T  S  F  A  F  S  I  L  S  N  V  I  V  G  N  I  I  T  C   </second_frame>
            <third_frame>   P  Y  *  D  G   : D  G  L  H  K  Y  F  T  S  K  F  Y  W  W  D  *  S  S  *  D  G  I  T  A  G  Q  V  L  *  D  C  C  T  E  S  E  A  E   : R  W  R  R  F  R  K  S  T  N  L  *  K  K  S  K  I  T  C  Y  T  C  Q  I  S  W  W  F  C  P  *  S   : G  C  S  A  C  S  R  S  *  E  N  Y  S  I  R :   I  K  C  W  F  K  L  G  N  I  I  N  I  W  W  L  G  Q  S  C  I  C  K  R  Q  F  H  *  Q  A  I  Q  *  Y  C  T  E  H  G  S  C  F  L  N  D  P  L  E  R   : A  P  K  C  L  E  A  F  R  N  S  F  R  S  G  N  Y  *  N  C  H  Y  K  T  V  I  A  V  I  L  *  R  C  Q  E  E  Y  *  R  L  G  T  *  S  N  H  A  F  S   : G  K  S  H  Q  K  R  S  S  Q  C  V  H  Q  E  T  L  Q  :  R  K  P  P  R  R  N  V  A  R  T  *  *  D  S  H  E  E  K  A  Y  T  *  D  T  S  C  S  S  A  S  F  Q   : D  I  G  G  V  T  T  *  C  *  D  S  *  K  G  L  *  L  G  Y  *  S  D  R  P  S  K  D  S  R  A  S  I  I  I  N  V  H  Y  K  Q  W  L  N  W  F  T  Y  Q  F  S  K  E  L  *  I  A  Q  C  I  P  F  R  *  A  T  V  T  N  V  W  W  C  R  F  K  R  W  W  A  *  C  W  Y  L  S  N  S  R  C  I  R  D  S  I  D  A  G  F  D  H  S  R  V  I  Y  L  L  S  P  P  S  L  Q  N  P  S  L  V  Q  W  S  A  T  I  F  C  H  G  Q  C  F  A  E  L  I  A  I  G  F  Y  P  L  T  V  Y  F  Y  V  N  Y  K  F  I  V  R  R  S  C  T  K  *  E  G  T  F  R  L  Y  R  K  R  L  V  L  L  P  F  V  M  I  V  G  N  L  F  S  S  R  Q  F  L  S  S  I  L  H  L  L  S  Q  F  C  Q  M  *  *  *  E  I  S  S  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72947" stop="72930"/>
                    <exon start="72554" stop="72441"/>
                    <exon start="72306" stop="72211"/>
                    <exon start="72074" stop="72032"/>
                    <exon start="71678" stop="71530"/>
                    <exon start="71433" stop="71287"/>
                    <exon start="70524" stop="70472"/>
                    <exon start="70258" stop="70159"/>
                    <exon start="69822" stop="69550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLIEMEMDYINTSHPNFIGGTKAHEMALQQVKSSRIAAPNPRQKDGVDLEKAPTSERSLKSRAILARSVGGFVPDQVVRPAPEVEKTTASGSNVGSSWGISSIFGGSDNRASVKDNFINKPFSDTALSMDHAFSMIHLREPPSVLRPSETHSDQETIEIAITKLLLRSYYDVVRKNIEDSVPKAIMHFLVNHTKRDLHNVFIKKLYRENLLEEMLQEPDEIAMKRKRTRETLRVLQQAFKTLEELPLDAETVERGYSLGTDLTGLPKIHGLPSSSMYTTSSGSTGSHTSSPKSSRLRNASHSGELQLPMYGGVDSNGGGHNAGIYPTVGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69580" stop="69338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CWYLSNSRCIRDSIDAGFDHSRVIYLLSPPSLQNPSLVQWSATIFCHGQCFAELIAIGFYPLTVYFYVNYKFIVRRSCTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="84538" PGL_stop="86178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84538" e_stop="84568"/>
            <exon e_start="85003" e_stop="85388"/>
            <exon e_start="85497" e_stop="85638"/>
            <exon e_start="85915" e_stop="86042"/>
            <exon e_start="86174" e_stop="86178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.772" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84538" e_stop="84568" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.951">
            <gDNA_intron_boundary i_start="84569" i_stop="85002" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85003" e_stop="85388" e_length="386"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85389" i_stop="85496" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85497" e_stop="85638" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.813">
            <gDNA_intron_boundary i_start="85639" i_stop="85914" i_length="276"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="85915" e_stop="86042" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.772">
            <gDNA_intron_boundary i_start="86043" i_stop="86173" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86174" e_stop="86178" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84538" stop="84568"/>
              <exon start="85003" stop="85388"/>
              <exon start="85497" stop="85638"/>
              <exon start="85915" stop="86042"/>
              <exon start="86174" stop="86178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATGTTTCGCCGTCGCCGGAGCTCTATTG : GACCCTTCAAACTGCTGTGCGGACAAGAGGATTGTCTCGTTAAGGAGGAATGCCTCGTTAAGGATGATCTTTTTGACCTCAAGTCAAATGAGGAATGCCCTGTGGAGAATGAACTTCTTGAATTCTCATCAGAGGAGCTGAGTCACTTTACCGGTCAATATTCTCCGGAGAACCTTATTGGAGTCACTGACTTAGGAAAGCTCTACCGTGGGAAAATGCCCATTGTTTCTAATCAAGGTAAAGTTTATAAGGATGTCACCGTCAAGATTCTGGTTGAGGATGAAAGGAGATTTCGTATGCAAATGCCCGCTTCTGTTAAAGTCAAAGTTCTGGCTGATGATGAAAGGGCGATTCTAATACATGACAGCAAACTGTTAAGATTGGAG : GATGAACTAAAATTTTTGCAAGCTCCAAAGATTAGGGGCAATCGCAGCTTAATGAAAGTTGTTGGATATTGTCGCAAGGAGATTGTGGGTGTTGTTTATGATCTAAATCCACTTGACACCTTGCATAACTTGATTTTTCAAG : ATGACTTCAATTGGCTGCAGAGGGTCAAGACTGCCATTGCATTAGCTCGCTTGCTTGCCTATCTGCATGATAGGAATCAATCATACCTGATTCGAAACTTGGCTCCATCCCACATAGTTGTTGACCAG : AATTT</gDNA_template>
            <first_frame> I  M  F  R  R  R  R  S  S  I   : G  P  F  K  L  L  C  G  Q  E  D  C  L  V  K  E  E  C  L  V  K  D  D  L  F  D  L  K  S  N  E  E  C  P  V  E  N  E  L  L  E  F  S  S  E  E  L  S  H  F  T  G  Q  Y  S  P  E  N  L  I  G  V  T  D  L  G  K  L  Y  R  G  K  M  P  I  V  S  N  Q  G  K  V  Y  K  D  V  T  V  K  I  L  V  E  D  E  R  R  F  R  M  Q  M  P  A  S  V  K  V  K  V  L  A  D  D  E  R  A  I  L  I  H  D  S  K  L  L  R  L  E  :  D  E  L  K  F  L  Q  A  P  K  I  R  G  N  R  S  L  M  K  V  V  G  Y  C  R  K  E  I  V  G  V  V  Y  D  L  N  P  L  D  T  L  H  N  L  I  F  Q   : D  D  F  N  W  L  Q  R  V  K  T  A  I  A  L  A  R  L  L  A  Y  L  H  D  R  N  Q  S  Y  L  I  R  N  L  A  P  S  H  I  V  V  D  Q  :  N   </first_frame>
            <second_frame>  S  C  F  A  V  A  G  A  L  L  :  D  P  S  N  C  C  A  D  K  R  I  V  S  L  R  R  N  A  S  L  R  M  I  F  L  T  S  S  Q  M  R  N  A  L  W  R  M  N  F  L  N  S  H  Q  R  S  *  V  T  L  P  V  N  I  L  R  R  T  L  L  E  S  L  T  *  E  S  S  T  V  G  K  C  P  L  F  L  I  K  V  K  F  I  R  M  S  P  S  R  F  W  L  R  M  K  G  D  F  V  C  K  C  P  L  L  L  K  S  K  F  W  L  M  M  K  G  R  F  *  Y  M  T  A  N  C  *  D  W  R :   M  N  *  N  F  C  K  L  Q  R  L  G  A  I  A  A  *  *  K  L  L  D  I  V  A  R  R  L  W  V  L  F  M  I  *  I  H  L  T  P  C  I  T  *  F  F  K  :  M  T  S  I  G  C  R  G  S  R  L  P  L  H  *  L  A  C  L  P  I  C  M  I  G  I  N  H  T  *  F  E  T  W  L  H  P  T  *  L  L  T  R :   I  </second_frame>
            <third_frame>   H  V  S  P  S  P  E  L  Y  W :   T  L  Q  T  A  V  R  T  R  G  L  S  R  *  G  G  M  P  R  *  G  *  S  F  *  P  Q  V  K  *  G  M  P  C  G  E  *  T  S  *  I  L  I  R  G  A  E  S  L  Y  R  S  I  F  S  G  E  P  Y  W  S  H  *  L  R  K  A  L  P  W  E  N  A  H  C  F  *  S  R  *  S  L  *  G  C  H  R  Q  D  S  G  *  G  *  K  E  I  S  Y  A  N  A  R  F  C  *  S  Q  S  S  G  *  *  *  K  G  D  S  N  T  *  Q  Q  T  V  K  I  G   : G  *  T  K  I  F  A  S  S  K  D  *  G  Q  S  Q  L  N  E  S  C  W  I  L  S  Q  G  D  C  G  C  C  L  *  S  K  S  T  *  H  L  A  *  L  D  F  S  R :   *  L  Q  L  A  A  E  G  Q  D  C  H  C  I  S  S  L  A  C  L  S  A  *  *  E  S  I  I  P  D  S  K  L  G  S  I  P  H  S  C  *  P   : E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84538" stop="84568"/>
                    <exon start="85003" stop="85388"/>
                    <exon start="85497" stop="85638"/>
                    <exon start="85915" stop="86042"/>
                    <exon start="86174" stop="86176"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMFRRRRSSIGPFKLLCGQEDCLVKEECLVKDDLFDLKSNEECPVENELLEFSSEELSHFTGQYSPENLIGVTDLGKLYRGKMPIVSNQGKVYKDVTVKILVEDERRFRMQMPASVKVKVLADDERAILIHDSKLLRLEDELKFLQAPKIRGNRSLMKVVGYCRKEIVGVVYDLNPLDTLHNLIFQDDFNWLQRVKTAIALARLLAYLHDRNQSYLIRNLAPSHIVVDQN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="88834" PGL_stop="90827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88834" e_stop="89349"/>
            <exon e_start="89433" e_stop="89597"/>
            <exon e_start="90411" e_stop="90827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.945" e_score="0.994"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88834" e_stop="89349" e_length="516"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89350" i_stop="89432" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="89433" e_stop="89597" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.945">
            <gDNA_intron_boundary i_start="89598" i_stop="90410" i_length="813"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="90411" e_stop="90827" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88834" stop="89349"/>
              <exon start="89433" stop="89597"/>
              <exon start="90411" stop="90800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89528" stop="89597"/>
              <exon start="90411" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTACTTATATGTCGTTAGTCGAGGATTAGAAAACTCCAACCCCATCGAACGTCTTTTGTTTCATCAAACTCAAATTAAAATTTGAAACTTTAAGAGATAGATGTTTAAGTTTGGAAATCGCTTAGAGTTAAAGTTTTAACTTCAATGAGATATTCTAAAAAATTGGAGAATTCGCATAAGAATTTCTAATAAGGTTTTAATAACAAAAAATTGCAAAAGTTAAAACAATAAATAGTCAAATTGTTAATCGCCGGAAAACCGTATTAAGCGGAGTGTCTTAGGTGCCTTACACCTTCCTAAGACACTAATATGAATCCCGAACATAGCTACTTTCGAAACTCCTAAAAAGTCAACAATACCTTTAAAATAAAATAAACTCTTTTTCGAAATAATTTTTCGATAAAACAATATTGAACACTGTACATCACCAAGATGTAGCCACAGGTGATTCATGATACTCTACAGCCTTGAAATTTAGGCTCTTCAGACAACATGGCTTTCATATCTCTCCAG : ATATATTTAATGATTTTAAGGACGTGAATGACAATATGAAGCAAAGTGGTATATTAGCATTTATGAGAGAATGCCAAATGCTAATCCTCTTTTGCTAGAGCTTGCTAAATTAGACTTCAACATTGTTCAAGTAACACACCAACAAGATTTGAAAAGTCTATCAAG : GTGGTGGAAGAAAACAGGACTAGCAAAAAAGCTTTCATTTTCAAGGGATATACTTGTTGAGAATATGTTTTGGACAGTGGGTGCATTGTTTGAGCCTCAACATAGCTACTTTCGAAGATTGATAACAAAAGTCATTGTTTTTATTTCAATCATAGATGACATTTATGATGTTTATGGCACGCTTGATGAGTTGGAACTCTTCACACTTGCTATTCAAAGGTAATTATAATTTTCTATCGCAAAATAATTACAAAATTTGATTTTCTAGTAAAAATTCAGATGGGATACAAAAGCAATGGACCAAATTCCATACTCTATGAAAGTATGTTATCTTGCACTCATTAATATTATCAATGAAGTTGCGTATGATGTTCTCAAAAATCATGACATCAACTCCTACCCTACCTTACAAAATCA</gDNA_template>
            <first_frame> L  L  L  I  C  R  *  S  R  I  R  K  L  Q  P  H  R  T  S  F  V  S  S  N  S  N  *  N  L  K  L  *  E  I  D  V  *  V  W  K  S  L  R  V  K  V  L  T  S  M  R  Y  S  K  K  L  E  N  S  H  K  N  F  *  *  G  F  N  N  K  K  L  Q  K  L  K  Q  *  I  V  K  L  L  I  A  G  K  P  Y  *  A  E  C  L  R  C  L  T  P  S  *  D  T  N  M  N  P  E  H  S  Y  F  R  N  S  *  K  V  N  N  T  F  K  I  K  *  T  L  F  R  N  N  F  S  I  K  Q  Y  *  T  L  Y  I  T  K  M  *  P  Q  V  I  H  D  T  L  Q  P  *  N  L  G  S  S  D  N  M  A  F  I  S  L  Q  :  I  Y  L  M  I  L  R  T  *  M  T  I  *  S  K  V  V  Y  *  H  L  *  E  N  A  K  C  *  S  S  F  A  R  A  C  *  I  R  L  Q  H  C  S  S  N  T  P  T  R  F  E  K  S  I  K  :  V  V  E  E  N  R  T  S  K  K  A  F  I  F  K  G  Y  T  C  *  E  Y  V  L  D  S  G  C  I  V  *  A  S  T  *  L  L  S  K  I  D  N  K  S  H  C  F  Y  F  N  H  R  *  H  L  *  C  L  W  H  A  *  *  V  G  T  L  H  T  C  Y  S  K  V  I  I  I  F  Y  R  K  I  I  T  K  F  D  F  L  V  K  I  Q  M  G  Y  K  S  N  G  P  N  S  I  L  Y  E  S  M  L  S  C  T  H  *  Y  Y  Q  *  S  C  V  *  C  S  Q  K  S  *  H  Q  L  L  P  Y  L  T  K  S </first_frame>
            <second_frame>  F  Y  L  Y  V  V  S  R  G  L  E  N  S  N  P  I  E  R  L  L  F  H  Q  T  Q  I  K  I  *  N  F  K  R  *  M  F  K  F  G  N  R  L  E  L  K  F  *  L  Q  *  D  I  L  K  N  W  R  I  R  I  R  I  S  N  K  V  L  I  T  K  N  C  K  S  *  N  N  K  *  S  N  C  *  S  P  E  N  R  I  K  R  S  V  L  G  A  L  H  L  P  K  T  L  I  *  I  P  N  I  A  T  F  E  T  P  K  K  S  T  I  P  L  K  *  N  K  L  F  F  E  I  I  F  R  *  N  N  I  E  H  C  T  S  P  R  C  S  H  R  *  F  M  I  L  Y  S  L  E  I  *  A  L  Q  T  T  W  L  S  Y  L  S  R :   Y  I  *  *  F  *  G  R  E  *  Q  Y  E  A  K  W  Y  I  S  I  Y  E  R  M  P  N  A  N  P  L  L  L  E  L  A  K  L  D  F  N  I  V  Q  V  T  H  Q  Q  D  L  K  S  L  S  R :   W  W  K  K  T  G  L  A  K  K  L  S  F  S  R  D  I  L  V  E  N  M  F  W  T  V  G  A  L  F  E  P  Q  H  S  Y  F  R  R  L  I  T  K  V  I  V  F  I  S  I  I  D  D  I  Y  D  V  Y  G  T  L  D  E  L  E  L  F  T  L  A  I  Q  R  *  L  *  F  S  I  A  K  *  L  Q  N  L  I  F  *  *  K  F  R  W  D  T  K  A  M  D  Q  I  P  Y  S  M  K  V  C  Y  L  A  L  I  N  I  I  N  E  V  A  Y  D  V  L  K  N  H  D  I  N  S  Y  P  T  L  Q  N   </second_frame>
            <third_frame>   F  T  Y  M  S  L  V  E  D  *  K  T  P  T  P  S  N  V  F  C  F  I  K  L  K  L  K  F  E  T  L  R  D  R  C  L  S  L  E  I  A  *  S  *  S  F  N  F  N  E  I  F  *  K  I  G  E  F  A  *  E  F  L  I  R  F  *  *  Q  K  I  A  K  V  K  T  I  N  S  Q  I  V  N  R  R  K  T  V  L  S  G  V  S  *  V  P  Y  T  F  L  R  H  *  Y  E  S  R  T  *  L  L  S  K  L  L  K  S  Q  Q  Y  L  *  N  K  I  N  S  F  S  K  *  F  F  D  K  T  I  L  N  T  V  H  H  Q  D  V  A  T  G  D  S  *  Y  S  T  A  L  K  F  R  L  F  R  Q  H  G  F  H  I  S  P   : D  I  F  N  D  F  K  D  V  N  D  N  M  K  Q  S  G  I  L  A  F  M  R  E  C  Q  M  L  I  L  F  C  *  S  L  L  N  *  T  S  T  L  F  K  *  H  T  N  K  I  *  K  V  Y  Q   : G  G  G  R  K  Q  D  *  Q  K  S  F  H  F  Q  G  I  Y  L  L  R  I  C  F  G  Q  W  V  H  C  L  S  L  N  I  A  T  F  E  D  *  *  Q  K  S  L  F  L  F  Q  S  *  M  T  F  M  M  F  M  A  R  L  M  S  W  N  S  S  H  L  L  F  K  G  N  Y  N  F  L  S  Q  N  N  Y  K  I  *  F  S  S  K  N  S  D  G  I  Q  K  Q  W  T  K  F  H  T  L  *  K  Y  V  I  L  H  S  L  I  L  S  M  K  L  R  M  M  F  S  K  I  M  T  S  T  P  T  L  P  Y  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89464" stop="89597"/>
                    <exon start="90411" stop="90633"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYEAKWYISIYERMPNANPLLLELAKLDFNIVQVTHQQDLKSLSRWWKKTGLAKKLSFSRDILVENMFWTVGALFEPQHSYFRRLITKVIVFISIIDDIYDVYGTLDELELFTLAIQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="92564" PGL_stop="93374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92564" e_stop="92776"/>
            <exon e_start="92864" e_stop="93122"/>
            <exon e_start="93319" e_stop="93374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.594" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.991" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="92564" e_stop="92776" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.594" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92777" i_stop="92863" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92864" e_stop="93122" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.948">
            <gDNA_intron_boundary i_start="93123" i_stop="93318" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93319" e_stop="93374" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92564" stop="92776"/>
              <exon start="92864" stop="93122"/>
              <exon start="93319" stop="93374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGCTGTTTAATTATTTGTATAGTCACGTGAAACATAAGTATTATGGATGTATAAACTGGAAATGACAATGTCTATTAGCAAATCAAATTTAATTTCGAAATTAGAGGTTCCAAAATCCTGCATTTCTAACGTGCCAATTCGACGATCTGGAAACTATCAACCTTCTATTTGGGACTATAATCATATTCAATCACTGAAGAATCATTATTCA : GACGAGAAATTCATGAGACGCCGCAATGAGCTGAAGATGGAAGTGAAGATTATGCTCAGTGATCGTAACATGAAGCAATTGGAACAGTTGGAGATTATTGATAATTTGCAAAGGCTTGGATTGTCTTATCACTTTGAAGATGAAATATACAGTATTTTGAATAACTTAAGTGACAAAGGTAGCAAAAGAGATCACTTGTATGCTAAAGCTCTTGAATTCAGGCTCTTGAGACAACATGGATTTAACATTGTTTCACAAG : AAACTTTTGGTGGTTTCTATGATAATACAACTGGTTTTGGTGAAATTCATCATAAT</gDNA_template>
            <first_frame> S  A  V  *  L  F  V  *  S  R  E  T  *  V  L  W  M  Y  K  L  E  M  T  M  S  I  S  K  S  N  L  I  S  K  L  E  V  P  K  S  C  I  S  N  V  P  I  R  R  S  G  N  Y  Q  P  S  I  W  D  Y  N  H  I  Q  S  L  K  N  H  Y  S  :  D  E  K  F  M  R  R  R  N  E  L  K  M  E  V  K  I  M  L  S  D  R  N  M  K  Q  L  E  Q  L  E  I  I  D  N  L  Q  R  L  G  L  S  Y  H  F  E  D  E  I  Y  S  I  L  N  N  L  S  D  K  G  S  K  R  D  H  L  Y  A  K  A  L  E  F  R  L  L  R  Q  H  G  F  N  I  V  S  Q   : E  T  F  G  G  F  Y  D  N  T  T  G  F  G  E  I  H  H  N </first_frame>
            <second_frame>  L  L  F  N  Y  L  Y  S  H  V  K  H  K  Y  Y  G  C  I  N  W  K  *  Q  C  L  L  A  N  Q  I  *  F  R  N  *  R  F  Q  N  P  A  F  L  T  C  Q  F  D  D  L  E  T  I  N  L  L  F  G  T  I  I  I  F  N  H  *  R  I  I  I  Q :   T  R  N  S  *  D  A  A  M  S  *  R  W  K  *  R  L  C  S  V  I  V  T  *  S  N  W  N  S  W  R  L  L  I  I  C  K  G  L  D  C  L  I  T  L  K  M  K  Y  T  V  F  *  I  T  *  V  T  K  V  A  K  E  I  T  C  M  L  K  L  L  N  S  G  S  *  D  N  M  D  L  T  L  F  H  K  :  K  L  L  V  V  S  M  I  I  Q  L  V  L  V  K  F  I  I   </second_frame>
            <third_frame>   C  C  L  I  I  C  I  V  T  *  N  I  S  I  M  D  V  *  T  G  N  D  N  V  Y  *  Q  I  K  F  N  F  E  I  R  G  S  K  I  L  H  F  *  R  A  N  S  T  I  W  K  L  S  T  F  Y  L  G  L  *  S  Y  S  I  T  E  E  S  L  F   : R  R  E  I  H  E  T  P  Q  *  A  E  D  G  S  E  D  Y  A  Q  *  S  *  H  E  A  I  G  T  V  G  D  Y  *  *  F  A  K  A  W  I  V  L  S  L  *  R  *  N  I  Q  Y  F  E  *  L  K  *  Q  R  *  Q  K  R  S  L  V  C  *  S  S  *  I  Q  A  L  E  T  T  W  I  *  H  C  F  T  R :   N  F  W  W  F  L  *  *  Y  N  W  F  W  *  N  S  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92603" stop="92776"/>
                    <exon start="92864" stop="93122"/>
                    <exon start="93319" stop="93374"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLWMYKLEMTMSISKSNLISKLEVPKSCISNVPIRRSGNYQPSIWDYNHIQSLKNHYSDEKFMRRRNELKMEVKIMLSDRNMKQLEQLEIIDNLQRLGLSYHFEDEIYSILNNLSDKGSKRDHLYAKALEFRLLRQHGFNIVSQETFGGFYDNTTGFGEIHHN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="94226" PGL_stop="95129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94226" e_stop="94733"/>
            <exon e_start="94815" e_stop="95129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94226" e_stop="94733" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94734" i_stop="94814" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="94815" e_stop="95129" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94226" stop="94733"/>
              <exon start="94815" stop="95129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATACCAGATGGAGTATCGACGAATTGGATAGACTCCCAGACAATATGAAGATGTGTTATTATGCGCTCGATAACTTTATTAACCAATTGGCTGATGATGCTTTTGAAGAGCAAGGCATTTTCATTTCACCATATCTAAGAAATTCGGTAACTTATCCCTTCTTCTTTTTTTATTTCGAAAATAAGACAAATTATTATCATGTCTGCAAGTCTAACTCGATAGGTAGTATTACATTGTGAATTTAAATTTCAGTGGAGAGATTTGTGCAAATCATACCTGAGAGAAGCAAAGTGGTACCATAGCCAGTATATCCCAAGTATGGAAGAATATATGGACAACGCCTGGATTTCAATATCAGCTCCAGTAATATTAGTACATGCATATTTCCTCGTTGCCAACCCTGTAAACAAGGAGGCATTGCATTACTTGGAGAATAATTACCATGATATCATTCGTTGCTCAGCGTTAATTTTGAGGCTCGCCAATGATTTAGGAACATCATCG : GACGAGTTGAAAAGGGGTGACGTACCAAAATCAATACAATGTTACATGAACGAAACACAAGCTTCAGAAGAAGAGGCTAGACAATACATCAGACTGCTGATTAGCCAGACATGGAAGAAATTGAACGAAGCTCATTGGCTAGCAGCAGACCCCTTCCCAAAGATATTTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGGTAATAACTCCACGACTAAAAACCACATCATGGCGTTGCTCTTTGAATCCGTTCCTCTAGGACACAAACATTCTTCAGCA</gDNA_template>
            <first_frame> E  N  T  R  W  S  I  D  E  L  D  R  L  P  D  N  M  K  M  C  Y  Y  A  L  D  N  F  I  N  Q  L  A  D  D  A  F  E  E  Q  G  I  F  I  S  P  Y  L  R  N  S  V  T  Y  P  F  F  F  F  Y  F  E  N  K  T  N  Y  Y  H  V  C  K  S  N  S  I  G  S  I  T  L  *  I  *  I  S  V  E  R  F  V  Q  I  I  P  E  R  S  K  V  V  P  *  P  V  Y  P  K  Y  G  R  I  Y  G  Q  R  L  D  F  N  I  S  S  S  N  I  S  T  C  I  F  P  R  C  Q  P  C  K  Q  G  G  I  A  L  L  G  E  *  L  P  *  Y  H  S  L  L  S  V  N  F  E  A  R  Q  *  F  R  N  I  I   : G  R  V  E  K  G  *  R  T  K  I  N  T  M  L  H  E  R  N  T  S  F  R  R  R  G  *  T  I  H  Q  T  A  D  *  P  D  M  E  E  I  E  R  S  S  L  A  S  S  R  P  L  P  K  D  I  C  Y  V  C  Y  E  P  S  K  N  G  T  M  H  V  S  A  W  *  W  P  W  R  *  *  L  H  D  *  K  P  H  H  G  V  A  L  *  I  R  S  S  R  T  Q  T  F  F  S  </first_frame>
            <second_frame>  R  I  P  D  G  V  S  T  N  W  I  D  S  Q  T  I  *  R  C  V  I  M  R  S  I  T  L  L  T  N  W  L  M  M  L  L  K  S  K  A  F  S  F  H  H  I  *  E  I  R  *  L  I  P  S  S  F  F  I  S  K  I  R  Q  I  I  I  M  S  A  S  L  T  R  *  V  V  L  H  C  E  F  K  F  Q  W  R  D  L  C  K  S  Y  L  R  E  A  K  W  Y  H  S  Q  Y  I  P  S  M  E  E  Y  M  D  N  A  W  I  S  I  S  A  P  V  I  L  V  H  A  Y  F  L  V  A  N  P  V  N  K  E  A  L  H  Y  L  E  N  N  Y  H  D  I  I  R  C  S  A  L  I  L  R  L  A  N  D  L  G  T  S  S  :  D  E  L  K  R  G  D  V  P  K  S  I  Q  C  Y  M  N  E  T  Q  A  S  E  E  E  A  R  Q  Y  I  R  L  L  I  S  Q  T  W  K  K  L  N  E  A  H  W  L  A  A  D  P  F  P  K  I  F  V  T  C  A  M  N  L  A  R  M  A  Q  C  M  Y  Q  H  G  D  G  H  G  G  N  N  S  T  T  K  N  H  I  M  A  L  L  F  E  S  V  P  L  G  H  K  H  S  S  A </second_frame>
            <third_frame>   E  Y  Q  M  E  Y  R  R  I  G  *  T  P  R  Q  Y  E  D  V  L  L  C  A  R  *  L  Y  *  P  I  G  *  *  C  F  *  R  A  R  H  F  H  F  T  I  S  K  K  F  G  N  L  S  L  L  L  F  L  F  R  K  *  D  K  L  L  S  C  L  Q  V  *  L  D  R  *  Y  Y  I  V  N  L  N  F  S  G  E  I  C  A  N  H  T  *  E  K  Q  S  G  T  I  A  S  I  S  Q  V  W  K  N  I  W  T  T  P  G  F  Q  Y  Q  L  Q  *  Y  *  Y  M  H  I  S  S  L  P  T  L  *  T  R  R  H  C  I  T  W  R  I  I  T  M  I  S  F  V  A  Q  R  *  F  *  G  S  P  M  I  *  E  H  H  R :   T  S  *  K  G  V  T  Y  Q  N  Q  Y  N  V  T  *  T  K  H  K  L  Q  K  K  R  L  D  N  T  S  D  C  *  L  A  R  H  G  R  N  *  T  K  L  I  G  *  Q  Q  T  P  S  Q  R  Y  L  L  R  V  L  *  T  *  Q  E  W  H  N  A  C  I  S  M  V  M  A  M  A  V  I  T  P  R  L  K  T  T  S  W  R  C  S  L  N  P  F  L  *  D  T  N  I  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94452" stop="94733"/>
                    <exon start="94815" stop="95129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVLHCEFKFQWRDLCKSYLREAKWYHSQYIPSMEEYMDNAWISISAPVILVHAYFLVANPVNKEALHYLENNYHDIIRCSALILRLANDLGTSSDELKRGDVPKSIQCYMNETQASEEEARQYIRLLISQTWKKLNEAHWLAADPFPKIFVTCAMNLARMAQCMYQHGDGHGGNNSTTKNHIMALLFESVPLGHKHSSA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94226" stop="94468"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTRWSIDELDRLPDNMKMCYYALDNFINQLADDAFEEQGIFISPYLRNSVTYPFFFFYFENKTNYYHVCKSNSIGSITL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="99292" PGL_stop="94467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99292" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="96129"/>
            <exon e_start="95993" e_stop="95792"/>
            <exon e_start="94629" e_stop="94467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="99292" e_stop="99153" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="96129" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95993" e_stop="95792" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="0.797" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95791" i_stop="94630" i_length="1162"/>
          </intron>
          <exon e_serial="5" e_score="0.933">
            <gDNA_exon_boundary e_start="94629" e_stop="94467" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99292" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95792"/>
              <exon start="94629" stop="94467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565149" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGGGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG : GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAG : GGTTGGCAACGAGGAAATATGCATGTACTAATATTACTGGAGCTGATATTGAAATCCAGGCGTTGTCCATATATTCTTCCATACTTGGGATATACTGGCTATGGTACCACTTTGCTTCTCTCAGGTATGATTTGCACAAATCTCTCCACTGAAATTTAAATTC</gDNA_template>
            <first_frame> A  G  K  A  W  T  R  *  R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  :  V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K   : G  L  A  T  R  K  Y  A  C  T  N  I  T  G  A  D  I  E  I  Q  A  L  S  I  Y  S  S  I  L  G  I  Y  W  L  W  Y  H  F  A  S  L  R  Y  D  L  H  K  S  L  H  *  N  L  N   </first_frame>
            <second_frame>  Q  G  K  R  G  R  G  K  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R :   F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  :  G  W  Q  R  G  N  M  H  V  L  I  L  L  E  L  I  L  K  S  R  R  C  P  Y  I  L  P  Y  L  G  Y  T  G  Y  G  T  T  L  L  L  S  G  M  I  C  T  N  L  S  T  E  I  *  I  </second_frame>
            <third_frame>   R  E  S  V  D  A  V  K  R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G   : G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R :   V  G  N  E  E  I  C  M  Y  *  Y  Y  W  S  *  Y  *  N  P  G  V  V  H  I  F  F  H  T  W  D  I  L  A  M  V  P  L  C  F  S  Q  V  *  F  A  Q  I  S  P  L  K  F  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96129"/>
                    <exon start="95993" stop="95823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAVSKMGVTSILVGKGVNLGALRQGLSEFVKNSASVEKNKEQWRKFSKEPGSSKSDAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99268" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="95661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="99268" e_stop="99153" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="95661" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99268" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="95661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCGGTAAAATCACTTTTTGTCAATTGTATCATGCATTCAGTCGATTCAATTAATTACATCGCTCGTCGGTCTAGATCAAATAATTGCTACATGCAAATCCTAGAGATACACATAGTAAGCTAAAGCAGTATCTTTCAGGTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGA</gDNA_template>
            <first_frame> R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  V  K  S  L  F  V  N  C  I  M  H  S  V  D  S  I  N  Y  I  A  R  R  S  R  S  N  N  C  Y  M  Q  I  L  E  I  H  I  V  S  *  S  S  I  F  Q  V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K  G  N  Y  W  D  I  S  C  T  S  S  Q  E  Y  G  T  S  P  I  S  I  H  P  Y  L  F  L  L  K  D  H  R  P  F  F  W  M  L  L  L  Y  G  Y  * </first_frame>
            <second_frame>  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R  *  N  H  F  L  S  I  V  S  C  I  Q  S  I  Q  L  I  T  S  L  V  G  L  D  Q  I  I  A  T  C  K  S  *  R  Y  T  *  *  A  K  A  V  S  F  R  F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  V  I  I  G  T  S  V  A  L  V  V  K  N  M  A  Q  V  P  Y  R  F  I  H  I  C  S  Y  *  R  I  I  V  H  F  F  G  C  Y  C  C  M  D  I   </second_frame>
            <third_frame>   R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G  G  K  I  T  F  C  Q  L  Y  H  A  F  S  R  F  N  *  L  H  R  S  S  V  *  I  K  *  L  L  H  A  N  P  R  D  T  H  S  K  L  K  Q  Y  L  S  G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R  *  L  L  G  H  Q  L  H  *  *  S  R  I  W  H  K  S  H  I  D  S  S  I  S  V  L  I  K  G  S  S  S  I  F  L  D  V  I  V  V  W  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAVKSLFVNCIMHSVDSINYIARRSRSNNCYMQILEIHIVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95932" stop="95708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKDSPSLLRILLQLKRTKNNGANSQKNQVHPKVMHNDDLAVPSTQIKVIIGTSVALVVKNMAQVPYRFIHICSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="99288" e_stop="99153"/>
            <exon e_start="98321" e_stop="98150"/>
            <exon e_start="96245" e_stop="96129"/>
            <exon e_start="95993" e_stop="95024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.211" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99288" e_stop="99153" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99152" i_stop="98322" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98321" e_stop="98150" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.211">
            <gDNA_intron_boundary i_start="98149" i_stop="96246" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96245" e_stop="96129" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96128" i_stop="95994" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="95993" e_stop="95024" e_length="970"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99288" stop="99153"/>
              <exon start="98321" stop="98150"/>
              <exon start="96245" stop="96129"/>
              <exon start="95993" stop="95024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCGTGGACGCGGTAAAGAGAGATGGGAGACGAAAAGGTGAAGAATGAAGCAATGGAGATAATGGGATTGTTCCAAGTTCTTCCTCGTCTCGTCGTCTTCGATCTTGATTATACCCTTTGGCCCTTTTATTG : TGAATGCCGCTCCAAAAATGAGAAGCCATCGATGTATCCTCAGGCCAAAGGTATCTTGCATGCCTTCAAAGACAAAGGAGTGAATGTTGCTATTGCCTCAAGATCGCCAACTCCAGATATAGCAAATGCTTTCCTTCAAAAACTGGAGATAAAATCAATGTTTGTAGCCCAG : GAGATATTCTCCAGTTGGACACACAAGACGGAACACTTTCAGAAAATCAACCGAAAGACTACGGTGCCCTACAATGAGATGCTGTTTTTTGATGATGAAAATCGGAACATACAGGCG : GTTTCAAAAATGGGTGTCACAAGTATATTGGTGGGCAAAGGGGTAAATTTAGGGGCTTTGAGGCAAGGACTCTCCGAGTTTGTTAAGAATTCTGCTTCAGTTGAAAAGAACAAAGAACAATGGCGCAAATTCTCAAAAGAACCAGGTTCATCCAAAAGTGATGCACAATGACGATTTAGCAGTCCCCAGCACACAAATAAAGGTAATTATTGGGACATCAGTTGCACTAGTAGTCAAGAATATGGCACAAGTCCCATATCGATTCATCCATATCTGTTCTTATTAAAGGATCATCGTCCATTTTTTTGGATGTTATTGTTGTATGGATATTGACACTTTGAACTTGATGAATAGATAGGTTTCCTATCCTATTACGTACAATATTATTGATAGTGGGAAGACATATCGTCCACTATGATTCAAAATTAGAATATGACTGAAAATTCAAAAAGGTTATTTGTTGGCGAGCTGTAATTTTCCTTCTGGACCATACTCTGAAATGAGATCTGTCAGACGTTCAAACTTCCCTTAGTTCTGATAAAGGAACCTTGTAAAGTTTCTTCTTTCTTTCAGAAAGAGGCGAGTAACTTGAGGCTATCAGATCCCAAAAAAGGGCACTGTGATTGATTATATAGCTATGAATCAACTGCCAAATCATATGCAGTTTTGATAATGCATTGTGTACTATGCATACTGCACCCACTGAGCCTTCTCTCTTCCCCCCTGCCCCTTCTATAAATGGGGAGGAAATTGCAGGGTGGGGAATCAAAACCTTACAAACAAGGTGAAAGTTCATTCACAACTCAATGACCCCTAGATCATGAATTTCTCTCTATAGTTGACCATAGAGTGGTCCTCTTTTTCTGCTGAAGAATGTTTGTGTCCTAGAGGAACGGATTCAAAGAGCAACGCCATGATGTGGTTTTTAGTCGTGGAGTTATTACCGCCATGGCCATCACCATGCTGATAC</gDNA_template>
            <first_frame> G  K  R  G  R  G  K  E  R  W  E  T  K  R  *  R  M  K  Q  W  R  *  W  D  C  S  K  F  F  L  V  S  S  S  S  I  L  I  I  P  F  G  P  F  I   : V  N  A  A  P  K  M  R  S  H  R  C  I  L  R  P  K  V  S  C  M  P  S  K  T  K  E  *  M  L  L  L  P  Q  D  R  Q  L  Q  I  *  Q  M  L  S  F  K  N  W  R  *  N  Q  C  L  *  P  R :   R  Y  S  P  V  G  H  T  R  R  N  T  F  R  K  S  T  E  R  L  R  C  P  T  M  R  C  C  F  L  M  M  K  I  G  T  Y  R  R :   F  Q  K  W  V  S  Q  V  Y  W  W  A  K  G  *  I  *  G  L  *  G  K  D  S  P  S  L  L  R  I  L  L  Q  L  K  R  T  K  N  N  G  A  N  S  Q  K  N  Q  V  H  P  K  V  M  H  N  D  D  L  A  V  P  S  T  Q  I  K  V  I  I  G  T  S  V  A  L  V  V  K  N  M  A  Q  V  P  Y  R  F  I  H  I  C  S  Y  *  R  I  I  V  H  F  F  G  C  Y  C  C  M  D  I  D  T  L  N  L  M  N  R  *  V  S  Y  P  I  T  Y  N  I  I  D  S  G  K  T  Y  R  P  L  *  F  K  I  R  I  *  L  K  I  Q  K  G  Y  L  L  A  S  C  N  F  P  S  G  P  Y  S  E  M  R  S  V  R  R  S  N  F  P  *  F  *  *  R  N  L  V  K  F  L  L  S  F  R  K  R  R  V  T  *  G  Y  Q  I  P  K  K  G  T  V  I  D  Y  I  A  M  N  Q  L  P  N  H  M  Q  F  *  *  C  I  V  Y  Y  A  Y  C  T  H  *  A  F  S  L  P  P  C  P  F  Y  K  W  G  G  N  C  R  V  G  N  Q  N  L  T  N  K  V  K  V  H  S  Q  L  N  D  P  *  I  M  N  F  S  L  *  L  T  I  E  W  S  S  F  S  A  E  E  C  L  C  P  R  G  T  D  S  K  S  N  A  M  M  W  F  L  V  V  E  L  L  P  P  W  P  S  P  C  *  Y </first_frame>
            <second_frame>  E  S  V  D  A  V  K  R  D  G  R  R  K  G  E  E  *  S  N  G  D  N  G  I  V  P  S  S  S  S  S  R  R  L  R  S  *  L  Y  P  L  A  L  L  L  :  *  M  P  L  Q  K  *  E  A  I  D  V  S  S  G  Q  R  Y  L  A  C  L  Q  R  Q  R  S  E  C  C  Y  C  L  K  I  A  N  S  R  Y  S  K  C  F  P  S  K  T  G  D  K  I  N  V  C  S  P   : G  D  I  L  Q  L  D  T  Q  D  G  T  L  S  E  N  Q  P  K  D  Y  G  A  L  Q  *  D  A  V  F  *  *  *  K  S  E  H  T  G   : G  F  K  N  G  C  H  K  Y  I  G  G  Q  R  G  K  F  R  G  F  E  A  R  T  L  R  V  C  *  E  F  C  F  S  *  K  E  Q  R  T  M  A  Q  I  L  K  R  T  R  F  I  Q  K  *  C  T  M  T  I  *  Q  S  P  A  H  K  *  R  *  L  L  G  H  Q  L  H  *  *  S  R  I  W  H  K  S  H  I  D  S  S  I  S  V  L  I  K  G  S  S  S  I  F  L  D  V  I  V  V  W  I  L  T  L  *  T  *  *  I  D  R  F  P  I  L  L  R  T  I  L  L  I  V  G  R  H  I  V  H  Y  D  S  K  L  E  Y  D  *  K  F  K  K  V  I  C  W  R  A  V  I  F  L  L  D  H  T  L  K  *  D  L  S  D  V  Q  T  S  L  S  S  D  K  G  T  L  *  S  F  F  F  L  S  E  R  G  E  *  L  E  A  I  R  S  Q  K  R  A  L  *  L  I  I  *  L  *  I  N  C  Q  I  I  C  S  F  D  N  A  L  C  T  M  H  T  A  P  T  E  P  S  L  F  P  P  A  P  S  I  N  G  E  E  I  A  G  W  G  I  K  T  L  Q  T  R  *  K  F  I  H  N  S  M  T  P  R  S  *  I  S  L  Y  S  *  P  *  S  G  P  L  F  L  L  K  N  V  C  V  L  E  E  R  I  Q  R  A  T  P  *  C  G  F  *  S  W  S  Y  Y  R  H  G  H  H  H  A  D   </second_frame>
            <third_frame>   K  A  W  T  R  *  R  E  M  G  D  E  K  V  K  N  E  A  M  E  I  M  G  L  F  Q  V  L  P  R  L  V  V  F  D  L  D  Y  T  L  W  P  F  Y  C :   E  C  R  S  K  N  E  K  P  S  M  Y  P  Q  A  K  G  I  L  H  A  F  K  D  K  G  V  N  V  A  I  A  S  R  S  P  T  P  D  I  A  N  A  F  L  Q  K  L  E  I  K  S  M  F  V  A  Q  :  E  I  F  S  S  W  T  H  K  T  E  H  F  Q  K  I  N  R  K  T  T  V  P  Y  N  E  M  L  F  F  D  D  E  N  R  N  I  Q  A  :  V  S  K  M  G  V  T  S  I  L  V  G  K  G  V  N  L  G  A  L  R  Q  G  L  S  E  F  V  K  N  S  A  S  V  E  K  N  K  E  Q  W  R  K  F  S  K  E  P  G  S  S  K  S  D  A  Q  *  R  F  S  S  P  Q  H  T  N  K  G  N  Y  W  D  I  S  C  T  S  S  Q  E  Y  G  T  S  P  I  S  I  H  P  Y  L  F  L  L  K  D  H  R  P  F  F  W  M  L  L  L  Y  G  Y  *  H  F  E  L  D  E  *  I  G  F  L  S  Y  Y  V  Q  Y  Y  *  *  W  E  D  I  S  S  T  M  I  Q  N  *  N  M  T  E  N  S  K  R  L  F  V  G  E  L  *  F  S  F  W  T  I  L  *  N  E  I  C  Q  T  F  K  L  P  L  V  L  I  K  E  P  C  K  V  S  S  F  F  Q  K  E  A  S  N  L  R  L  S  D  P  K  K  G  H  C  D  *  L  Y  S  Y  E  S  T  A  K  S  Y  A  V  L  I  M  H  C  V  L  C  I  L  H  P  L  S  L  L  S  S  P  L  P  L  L  *  M  G  R  K  L  Q  G  G  E  S  K  P  Y  K  Q  G  E  S  S  F  T  T  Q  *  P  L  D  H  E  F  L  S  I  V  D  H  R  V  V  L  F  F  C  *  R  M  F  V  S  *  R  N  G  F  K  E  Q  R  H  D  V  V  F  S  R  G  V  I  T  A  M  A  I  T  M  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99268" stop="99153"/>
                    <exon start="98321" stop="98150"/>
                    <exon start="96245" stop="96129"/>
                    <exon start="95993" stop="95823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REMGDEKVKNEAMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKNEKPSMYPQAKGILHAFKDKGVNVAIASRSPTPDIANAFLQKLEIKSMFVAQEIFSSWTHKTEHFQKINRKTTVPYNEMLFFDDENRNIQAVSKMGVTSILVGKGVNLGALRQGLSEFVKNSASVEKNKEQWRKFSKEPGSSKSDAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="104923" PGL_stop="99868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104923" e_stop="104579"/>
            <exon e_start="104483" e_stop="104388"/>
            <exon e_start="102899" e_stop="102859"/>
            <exon e_start="102755" e_stop="102638"/>
            <exon e_start="102097" e_stop="102017"/>
            <exon e_start="100139" e_stop="99868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.798" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.072" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="104923" e_stop="104579" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.798">
            <gDNA_intron_boundary i_start="104578" i_stop="104484" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104483" e_stop="104388" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="104387" i_stop="102900" i_length="1488"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102899" e_stop="102859" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.835">
            <gDNA_intron_boundary i_start="102858" i_stop="102756" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102755" e_stop="102638" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.072" acc_prob="0.983">
            <gDNA_intron_boundary i_start="102637" i_stop="102098" i_length="540"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102097" e_stop="102017" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102016" i_stop="100140" i_length="1877"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="100139" e_stop="99868" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104923" stop="104579"/>
              <exon start="104483" stop="104388"/>
              <exon start="102899" stop="102859"/>
              <exon start="102755" stop="102638"/>
              <exon start="102097" stop="102017"/>
              <exon start="100139" stop="99868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGATTCAAAACCTCCTGAAATCCTCCGCCGATATTCTCATTCGCGAGTGCGCACGAAGTAAAGGAAAATGGAATTCCATTAATAAATCCAGAGAAACTCTTTCAATTTGAAGTTCAATTGAAGAAATTGAAAGAAGATGGAGAGAGATGGCGAAGGAATAGTGAGCTCCCAGTCGCAGAGGGTTAACAATGGTCGTTCAATTTCACCCAATAGAGTCCGAACCGGATCCGACCCCTTCCTGGTGACTTGTAGAGTGTTCAGCTTCGTTACTGCACTTGTTGCTATTCTCTGCATTGTTGTTAATGTCTATTCTGCTGTCCGATCCTTTAAGCATGGATATGAC : GTATTCGATGGAATTTTCCGGTGTTATGCTGTAGTGATTGCGGTTATTGTGGTTGTTGCGGAGACTGAATGGGGATTTTTCATCAAGTTCTGGAAG : GTGTTGGAGTTTTCAGCTGGAAGGGGCATGCTACAGATCTT : TGTTGCAGTGATGACCAGAGCTTATCCTGAAGATTATGGGCAAAGGAATGACCTCATCCTTCTCCGGAACATAGCTAGCTACTTTCTTCTTACCTGTGGTGCAATTTACATAATATCA : GGATTGTTGTGCTTTGGATTTATCAAACGTGCTCGTCAGGCAAAAGAAATATCCAGGGAGCAAGCAATTAACGATCTTCAG : GATTTGGAGCGTCGTAGAGAAGAGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCTTGAAGCTCTGTTGATACAGGAGAGGGCTTGAGAAATAGAGCTGGCATTTATGGCTATGGCAAATCACTGTCGAAATTGAGGAGAAAACTTGGAAAGGAAAGCTCAAATGAGCGAACTTGATGTTCATGTGTTTTACCTGCCTTTTTACCTATGTGAGATTGAAAATTTTCACTAGATGTATTGCA</gDNA_template>
            <first_frame> R  D  S  K  P  P  E  I  L  R  R  Y  S  H  S  R  V  R  T  K  *  R  K  M  E  F  H  *  *  I  Q  R  N  S  F  N  L  K  F  N  *  R  N  *  K  K  M  E  R  D  G  E  G  I  V  S  S  Q  S  Q  R  V  N  N  G  R  S  I  S  P  N  R  V  R  T  G  S  D  P  F  L  V  T  C  R  V  F  S  F  V  T  A  L  V  A  I  L  C  I  V  V  N  V  Y  S  A  V  R  S  F  K  H  G  Y  D  :  V  F  D  G  I  F  R  C  Y  A  V  V  I  A  V  I  V  V  V  A  E  T  E  W  G  F  F  I  K  F  W  K  :  V  L  E  F  S  A  G  R  G  M  L  Q  I  F :   V  A  V  M  T  R  A  Y  P  E  D  Y  G  Q  R  N  D  L  I  L  L  R  N  I  A  S  Y  F  L  L  T  C  G  A  I  Y  I  I  S  :  G  L  L  C  F  G  F  I  K  R  A  R  Q  A  K  E  I  S  R  E  Q  A  I  N  D  L  Q  :  D  L  E  R  R  R  E  E  L  E  A  L  L  I  Q  E  R  A  *  E  I  E  L  A  F  M  A  M  A  *  S  S  V  D  T  G  E  G  L  R  N  R  A  G  I  Y  G  Y  G  K  S  L  S  K  L  R  R  K  L  G  K  E  S  S  N  E  R  T  *  C  S  C  V  L  P  A  F  L  P  M  *  D  *  K  F  S  L  D  V  L   </first_frame>
            <second_frame>  E  I  Q  N  L  L  K  S  S  A  D  I  L  I  R  E  C  A  R  S  K  G  K  W  N  S  I  N  K  S  R  E  T  L  S  I  *  S  S  I  E  E  I  E  R  R  W  R  E  M  A  K  E  *  *  A  P  S  R  R  G  L  T  M  V  V  Q  F  H  P  I  E  S  E  P  D  P  T  P  S  W  *  L  V  E  C  S  A  S  L  L  H  L  L  L  F  S  A  L  L  L  M  S  I  L  L  S  D  P  L  S  M  D  M  T :   Y  S  M  E  F  S  G  V  M  L  *  *  L  R  L  L  W  L  L  R  R  L  N  G  D  F  S  S  S  S  G  R :   C  W  S  F  Q  L  E  G  A  C  Y  R  S   : L  L  Q  *  *  P  E  L  I  L  K  I  M  G  K  G  M  T  S  S  F  S  G  T  *  L  A  T  F  F  L  P  V  V  Q  F  T  *  Y  Q :   D  C  C  A  L  D  L  S  N  V  L  V  R  Q  K  K  Y  P  G  S  K  Q  L  T  I  F  R :   I  W  S  V  V  E  K  S  L  K  L  C  *  Y  R  R  G  L  E  K  *  S  W  H  L  W  L  W  L  E  A  L  L  I  Q  E  R  A  *  E  I  E  L  A  F  M  A  M  A  N  H  C  R  N  *  G  E  N  L  E  R  K  A  Q  M  S  E  L  D  V  H  V  F  Y  L  P  F  Y  L  C  E  I  E  N  F  H  *  M  Y  C  </second_frame>
            <third_frame>   R  F  K  T  S  *  N  P  P  P  I  F  S  F  A  S  A  H  E  V  K  E  N  G  I  P  L  I  N  P  E  K  L  F  Q  F  E  V  Q  L  K  K  L  K  E  D  G  E  R  W  R  R  N  S  E  L  P  V  A  E  G  *  Q  W  S  F  N  F  T  Q  *  S  P  N  R  I  R  P  L  P  G  D  L  *  S  V  Q  L  R  Y  C  T  C  C  Y  S  L  H  C  C  *  C  L  F  C  C  P  I  L  *  A  W  I  *   : R  I  R  W  N  F  P  V  L  C  C  S  D  C  G  Y  C  G  C  C  G  D  *  M  G  I  F  H  Q  V  L  E   : G  V  G  V  F  S  W  K  G  H  A  T  D  L  :  C  C  S  D  D  Q  S  L  S  *  R  L  W  A  K  E  *  P  H  P  S  P  E  H  S  *  L  L  S  S  Y  L  W  C  N  L  H  N  I   : R  I  V  V  L  W  I  Y  Q  T  C  S  S  G  K  R  N  I  Q  G  A  S  N  *  R  S  S   : G  F  G  A  S  *  R  R  A  *  S  S  V  D  T  G  E  G  L  R  N  R  A  G  I  Y  G  Y  G  L  K  L  C  *  Y  R  R  G  L  E  K  *  S  W  H  L  W  L  W  Q  I  T  V  E  I  E  E  K  T  W  K  G  K  L  K  *  A  N  L  M  F  M  C  F  T  C  L  F  T  Y  V  R  L  K  I  F  T  R  C  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104791" stop="104579"/>
                    <exon start="104483" stop="104388"/>
                    <exon start="102899" stop="102859"/>
                    <exon start="102755" stop="102638"/>
                    <exon start="102097" stop="102017"/>
                    <exon start="100139" stop="100083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMERDGEGIVSSQSQRVNNGRSISPNRVRTGSDPFLVTCRVFSFVTALVAILCIVVNVYSAVRSFKHGYDVFDGIFRCYAVVIAVIVVVAETEWGFFIKFWKVLEFSAGRGMLQIFVAVMTRAYPEDYGQRNDLILLRNIASYFLLTCGAIYIISGLLCFGFIKRARQAKEISREQAINDLQDLERRREELEALLIQERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="107868" PGL_stop="110709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107868" e_stop="108484"/>
            <exon e_start="109908" e_stop="110024"/>
            <exon e_start="110650" e_stop="110709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107868" e_stop="108484" e_length="617"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108485" i_stop="109907" i_length="1423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109908" e_stop="110024" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.820">
            <gDNA_intron_boundary i_start="110025" i_stop="110649" i_length="625"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110650" e_stop="110709" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107868" stop="108484"/>
              <exon start="109908" stop="110024"/>
              <exon start="110650" stop="110709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571188" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAACATCCTTATCCCTTTTTATTTCCTATTCATCACTCTCTTTTTTTTAATTTTCTTTACCAATTCTTGTTTTTCTTTCTATCTTCTTCTTCTTCTATCGCAAATTCACTGAGTACTATTTCTTTGGATATTATTAAATCAAGAGACAACGCTGTTATTCTCTTTTTCATGGCGTCGATTACTCCCCCGCCGACATTTGATGTAAACACTCACAAATTCAACTTCTCAAACCCTAAATTCACTTCCCGATTAAAGCGTTCATCTTCGTCTTTCACTCTTTCAACCTCTCATTTACTATCTAGGGTTTCCGGTTCCGCTTTCTGTTGTCGTTGCAGGAATGGTACCGGTGATGGTGAGACTGTTGAGCCATCGCCATCTGTTTCTTCTCAGAATAGCTCATCTTCTTCTTCTTCTTGGAGATGGGATTTGGCGTTTCAAGATGCGGTCAAGAATGCGATGAAAAAGTTGGATGATTATGTGAATTGGTCAAAAGGAGTGGGACTTGATGAGAGGAAGAGTGAAATTGGTGTTGATGATCAAGAATGGGATTGGGAACGATGGAAAAAGCATTTTAGTGAGGTTGAGGAGGAAGAACGGTTGGTTTCTGTTTTAAAG : GCACAGTTGGCTCATGCTATTAGTAGAGAAGATTATGAAGATGCTGCTAGACTCAAGGTGGCCATTGCTGCTGCAGCTACTAAGGACATTGTTGGAAGAGTGATGTCCCATGTAAAT : AAAGCCTTGGAAGAAGAGCGCTACAGGGATGCAGCATTTATGCGTGATTGTGCTGGTACA</gDNA_template>
            <first_frame> I  N  I  L  I  P  F  Y  F  L  F  I  T  L  F  F  L  I  F  F  T  N  S  C  F  S  F  Y  L  L  L  L  L  S  Q  I  H  *  V  L  F  L  W  I  L  L  N  Q  E  T  T  L  L  F  S  F  S  W  R  R  L  L  P  R  R  H  L  M  *  T  L  T  N  S  T  S  Q  T  L  N  S  L  P  D  *  S  V  H  L  R  L  S  L  F  Q  P  L  I  Y  Y  L  G  F  P  V  P  L  S  V  V  V  A  G  M  V  P  V  M  V  R  L  L  S  H  R  H  L  F  L  L  R  I  A  H  L  L  L  L  L  G  D  G  I  W  R  F  K  M  R  S  R  M  R  *  K  S  W  M  I  M  *  I  G  Q  K  E  W  D  L  M  R  G  R  V  K  L  V  L  M  I  K  N  G  I  G  N  D  G  K  S  I  L  V  R  L  R  R  K  N  G  W  F  L  F  *  R :   H  S  W  L  M  L  L  V  E  K  I  M  K  M  L  L  D  S  R  W  P  L  L  L  Q  L  L  R  T  L  L  E  E  *  C  P  M  *  I :   K  P  W  K  K  S  A  T  G  M  Q  H  L  C  V  I  V  L  V   </first_frame>
            <second_frame>  S  T  S  L  S  L  F  I  S  Y  S  S  L  S  F  F  *  F  S  L  P  I  L  V  F  L  S  I  F  F  F  F  Y  R  K  F  T  E  Y  Y  F  F  G  Y  Y  *  I  K  R  Q  R  C  Y  S  L  F  H  G  V  D  Y  S  P  A  D  I  *  C  K  H  S  Q  I  Q  L  L  K  P  *  I  H  F  P  I  K  A  F  I  F  V  F  H  S  F  N  L  S  F  T  I  *  G  F  R  F  R  F  L  L  S  L  Q  E  W  Y  R  *  W  *  D  C  *  A  I  A  I  C  F  F  S  E  *  L  I  F  F  F  F  L  E  M  G  F  G  V  S  R  C  G  Q  E  C  D  E  K  V  G  *  L  C  E  L  V  K  R  S  G  T  *  *  E  E  E  *  N  W  C  *  *  S  R  M  G  L  G  T  M  E  K  A  F  *  *  G  *  G  G  R  T  V  G  F  C  F  K   : G  T  V  G  S  C  Y  *  *  R  R  L  *  R  C  C  *  T  Q  G  G  H  C  C  C  S  Y  *  G  H  C  W  K  S  D  V  P  C  K   : *  S  L  G  R  R  A  L  Q  G  C  S  I  Y  A  *  L  C  W  Y  </second_frame>
            <third_frame>   Q  H  P  Y  P  F  L  F  P  I  H  H  S  L  F  F  N  F  L  Y  Q  F  L  F  F  F  L  S  S  S  S  S  I  A  N  S  L  S  T  I  S  L  D  I  I  K  S  R  D  N  A  V  I  L  F  F  M  A  S  I  T  P  P  P  T  F  D  V  N  T  H  K  F  N  F  S  N  P  K  F  T  S  R  L  K  R  S  S  S  S  F  T  L  S  T  S  H  L  L  S  R  V  S  G  S  A  F  C  C  R  C  R  N  G  T  G  D  G  E  T  V  E  P  S  P  S  V  S  S  Q  N  S  S  S  S  S  S  S  W  R  W  D  L  A  F  Q  D  A  V  K  N  A  M  K  K  L  D  D  Y  V  N  W  S  K  G  V  G  L  D  E  R  K  S  E  I  G  V  D  D  Q  E  W  D  W  E  R  W  K  K  H  F  S  E  V  E  E  E  E  R  L  V  S  V  L  K  :  A  Q  L  A  H  A  I  S  R  E  D  Y  E  D  A  A  R  L  K  V  A  I  A  A  A  A  T  K  D  I  V  G  R  V  M  S  H  V  N  :  K  A  L  E  E  E  R  Y  R  D  A  A  F  M  R  D  C  A  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107870" stop="108484"/>
                    <exon start="109908" stop="110024"/>
                    <exon start="110650" stop="110709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHPYPFLFPIHHSLFFNFLYQFLFFFLSSSSSIANSLSTISLDIIKSRDNAVILFFMASITPPPTFDVNTHKFNFSNPKFTSRLKRSSSSFTLSTSHLLSRVSGSAFCCRCRNGTGDGETVEPSPSVSSQNSSSSSSSWRWDLAFQDAVKNAMKKLDDYVNWSKGVGLDERKSEIGVDDQEWDWERWKKHFSEVEEEERLVSVLKAQLAHAISREDYEDAARLKVAIAAAATKDIVGRVMSHVNKALEEERYRDAAFMRDCAGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="113374" PGL_stop="117195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113374" e_stop="114076"/>
            <exon e_start="114154" e_stop="114277"/>
            <exon e_start="114438" e_stop="114607"/>
            <exon e_start="115977" e_stop="116051"/>
            <exon e_start="116197" e_stop="116289"/>
            <exon e_start="116396" e_stop="116542"/>
            <exon e_start="116846" e_stop="117195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="1.000" acc_prob="0.774" e_score="0.992"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="0.994"/>
          <exon-intron don_prob="0.928" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="113374" e_stop="114076" e_length="703"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114077" i_stop="114153" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="114154" e_stop="114277" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.774">
            <gDNA_intron_boundary i_start="114278" i_stop="114437" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="114438" e_stop="114607" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="114608" i_stop="115976" i_length="1369"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115977" e_stop="116051" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.928" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116052" i_stop="116196" i_length="145"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116197" e_stop="116289" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116290" i_stop="116395" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116396" e_stop="116542" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.934" acc_prob="0.987">
            <gDNA_intron_boundary i_start="116543" i_stop="116845" i_length="303"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="116846" e_stop="117195" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113374" stop="114076"/>
              <exon start="114154" stop="114277"/>
              <exon start="114438" stop="114607"/>
              <exon start="115977" stop="116051"/>
              <exon start="116197" stop="116289"/>
              <exon start="116396" stop="116542"/>
              <exon start="116846" stop="117195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTACTTGAAGAGAAAGCCAGTTCAGCAAGATTTACCTATTTCTTCTTCAAAGCTGCCCGGTGCTTCCAGTAACTTGGACACTGTTGGTCCCACTGAAAACAAAAGTGATATGTTTGATAAGATCTCAGATGCTGAGGAAGATGGCGAAGACAGGGAAGACGATTTTGGCTTTCAGAATGCATTGAAAGACATGATTCCAGGGGTACAGGTCAAGGTTTTGAAAGTGACAGCTCCAGGGAAGGTAGATAGAGATCTAATATCAAAGGTCATTGAGCAAATAATGGATGAGGAAGATGAGGATGAAGAGAAGGACTATGATTTGGACAGTGTGGATGACGAAGATGAAATTAAGGTGGAAAGAGATGGAGAGCAGAATGTGATTGAATTGGATACAGACAATGGGGTTAGTGATGGTGAAGAGCAGAGCCAAATTGCAGTTAGGGTGGTTGTTGGTGGTCTCATGCAAAATTCCTCAAATGGTGCTCATCATAAAGATCTGCTTCGAGTACCGGCAAGGCTAGAGAAGAAGGGTCACCTGTCATTTACTTTCACTATAGAGGAAGATGAGAACAAAAGCAATTTCTCTGGCAGTGGACAATCTCCCCCAAATAAAAAGGCTAGGCTTCAAGGTCAACGTAGCTTGGATCATGTGATGGTTGATCTTGCAAAGTTCATGGGCAAGGGGAAAATACCTATGAAG : GTCCTTAAAGATATGGGAGAGTTGATCAGCCTCACTCTTACTCAGGCACGAAATCGTCAGCCATTATCAAAGTCAACCACCTTTAACCGCATTGAGATTTCAACATCTCCAGACCCACTAAATG : GATTATATATTGGTGCTCATGGTCTGTACACTTCAGAAGTCATTCACTTTAGACGAAGATTTGGTCAGTGGAAAGAAGACGGTAGCCCTAAGGAGTCTTCACGCTTAGAATTTTACGAGTATGTTGAAGCGGTAAAATTAACTGGAGACTCTTATGTGCCAGCTGGTCAG : ATAGCATTCCGTGCAAGAATTGGAAAAAAGTATCAACTTCCACATAAAGGAATTATTCCAGAAGAATTTGGTGTG : ATTGCTCGTTATAGGGGACAAGGAAGGCTGGCAGAGCCTGGTTTCCGGAACCCCAGATGGGTTGATGGTGAACTGGTTATCCTAGATGGAAAG : TACATTAAAGGAGGACCCGTTGTGGGTTTTGTCTACTGGGATCCTGAATATCATTTCTTAGTATTCTTCCATCGGCTTAGGCTGCAGGAGTGAACATCTCTGTAGATACAATTTTTGGCTGTTTGTTCCTGGTTCAGTTCTTTGCAG : TCAACATGATATCTAGTACCACGAACCTTGAGCTGAAGAGAAGACTCAAGATTTCGTTTGAATATGGAGTCCTTGGCAACTGACTGTTTTAGTGGCCAGCATAAAACCTTTTGCATTATATGGAACTAACAGCCATTTTTGAGTTGATAGCCCCCAATATCTCTGGTATAGCAAATGGTCGAGGCCTACTAGCATTTTCTTAGGGCACTGAGCTTGTACATATGCTCTTTATTTGTTTTTTTTTCAGCTCTTGTATTATTCTTTTTTCTCCTTCAGTAAACATTGTTGTACGTTCAAAAAACTTGGAATTTATTCTCTAATAGAATCCGAAGATAGAACGGTACATTGGC</gDNA_template>
            <first_frame> C  L  L  E  E  K  A  S  S  A  R  F  T  Y  F  F  F  K  A  A  R  C  F  Q  *  L  G  H  C  W  S  H  *  K  Q  K  *  Y  V  *  *  D  L  R  C  *  G  R  W  R  R  Q  G  R  R  F  W  L  S  E  C  I  E  R  H  D  S  R  G  T  G  Q  G  F  E  S  D  S  S  R  E  G  R  *  R  S  N  I  K  G  H  *  A  N  N  G  *  G  R  *  G  *  R  E  G  L  *  F  G  Q  C  G  *  R  R  *  N  *  G  G  K  R  W  R  A  E  C  D  *  I  G  Y  R  Q  W  G  *  *  W  *  R  A  E  P  N  C  S  *  G  G  C  W  W  S  H  A  K  F  L  K  W  C  S  S  *  R  S  A  S  S  T  G  K  A  R  E  E  G  S  P  V  I  Y  F  H  Y  R  G  R  *  E  Q  K  Q  F  L  W  Q  W  T  I  S  P  K  *  K  G  *  A  S  R  S  T  *  L  G  S  C  D  G  *  S  C  K  V  H  G  Q  G  E  N  T  Y  E   : G  P  *  R  Y  G  R  V  D  Q  P  H  S  Y  S  G  T  K  S  S  A  I  I  K  V  N  H  L  *  P  H  *  D  F  N  I  S  R  P  T  K  W :   I  I  Y  W  C  S  W  S  V  H  F  R  S  H  S  L  *  T  K  I  W  S  V  E  R  R  R  *  P  *  G  V  F  T  L  R  I  L  R  V  C  *  S  G  K  I  N  W  R  L  L  C  A  S  W  S   : D  S  I  P  C  K  N  W  K  K  V  S  T  S  T  *  R  N  Y  S  R  R  I  W  C   : D  C  S  L  *  G  T  R  K  A  G  R  A  W  F  P  E  P  Q  M  G  *  W  *  T  G  Y  P  R  W  K   : V  H  *  R  R  T  R  C  G  F  C  L  L  G  S  *  I  S  F  L  S  I  L  P  S  A  *  A  A  G  V  N  I  S  V  D  T  I  F  G  C  L  F  L  V  Q  F  F  A   : V  N  M  I  S  S  T  T  N  L  E  L  K  R  R  L  K  I  S  F  E  Y  G  V  L  G  N  *  L  F  *  W  P  A  *  N  L  L  H  Y  M  E  L  T  A  I  F  E  L  I  A  P  N  I  S  G  I  A  N  G  R  G  L  L  A  F  S  *  G  T  E  L  V  H  M  L  F  I  C  F  F  F  S  S  C  I  I  L  F  S  P  S  V  N  I  V  V  R  S  K  N  L  E  F  I  L  *  *  N  P  K  I  E  R  Y  I  G </first_frame>
            <second_frame>  V  Y  L  K  R  K  P  V  Q  Q  D  L  P  I  S  S  S  K  L  P  G  A  S  S  N  L  D  T  V  G  P  T  E  N  K  S  D  M  F  D  K  I  S  D  A  E  E  D  G  E  D  R  E  D  D  F  G  F  Q  N  A  L  K  D  M  I  P  G  V  Q  V  K  V  L  K  V  T  A  P  G  K  V  D  R  D  L  I  S  K  V  I  E  Q  I  M  D  E  E  D  E  D  E  E  K  D  Y  D  L  D  S  V  D  D  E  D  E  I  K  V  E  R  D  G  E  Q  N  V  I  E  L  D  T  D  N  G  V  S  D  G  E  E  Q  S  Q  I  A  V  R  V  V  V  G  G  L  M  Q  N  S  S  N  G  A  H  H  K  D  L  L  R  V  P  A  R  L  E  K  K  G  H  L  S  F  T  F  T  I  E  E  D  E  N  K  S  N  F  S  G  S  G  Q  S  P  P  N  K  K  A  R  L  Q  G  Q  R  S  L  D  H  V  M  V  D  L  A  K  F  M  G  K  G  K  I  P  M  K  :  V  L  K  D  M  G  E  L  I  S  L  T  L  T  Q  A  R  N  R  Q  P  L  S  K  S  T  T  F  N  R  I  E  I  S  T  S  P  D  P  L  N   : G  L  Y  I  G  A  H  G  L  Y  T  S  E  V  I  H  F  R  R  R  F  G  Q  W  K  E  D  G  S  P  K  E  S  S  R  L  E  F  Y  E  Y  V  E  A  V  K  L  T  G  D  S  Y  V  P  A  G  Q  :  I  A  F  R  A  R  I  G  K  K  Y  Q  L  P  H  K  G  I  I  P  E  E  F  G  V  :  I  A  R  Y  R  G  Q  G  R  L  A  E  P  G  F  R  N  P  R  W  V  D  G  E  L  V  I  L  D  G  K  :  Y  I  K  G  G  P  V  V  G  F  V  Y  W  D  P  E  Y  H  F  L  V  F  F  H  R  L  R  L  Q  E  *  T  S  L  *  I  Q  F  L  A  V  C  S  W  F  S  S  L  Q  :  S  T  *  Y  L  V  P  R  T  L  S  *  R  E  D  S  R  F  R  L  N  M  E  S  L  A  T  D  C  F  S  G  Q  H  K  T  F  C  I  I  W  N  *  Q  P  F  L  S  *  *  P  P  I  S  L  V  *  Q  M  V  E  A  Y  *  H  F  L  R  A  L  S  L  Y  I  C  S  L  F  V  F  F  S  A  L  V  L  F  F  F  L  L  Q  *  T  L  L  Y  V  Q  K  T  W  N  L  F  S  N  R  I  R  R  *  N  G  T  L   </second_frame>
            <third_frame>   F  T  *  R  E  S  Q  F  S  K  I  Y  L  F  L  L  Q  S  C  P  V  L  P  V  T  W  T  L  L  V  P  L  K  T  K  V  I  C  L  I  R  S  Q  M  L  R  K  M  A  K  T  G  K  T  I  L  A  F  R  M  H  *  K  T  *  F  Q  G  Y  R  S  R  F  *  K  *  Q  L  Q  G  R  *  I  E  I  *  Y  Q  R  S  L  S  K  *  W  M  R  K  M  R  M  K  R  R  T  M  I  W  T  V  W  M  T  K  M  K  L  R  W  K  E  M  E  S  R  M  *  L  N  W  I  Q  T  M  G  L  V  M  V  K  S  R  A  K  L  Q  L  G  W  L  L  V  V  S  C  K  I  P  Q  M  V  L  I  I  K  I  C  F  E  Y  R  Q  G  *  R  R  R  V  T  C  H  L  L  S  L  *  R  K  M  R  T  K  A  I  S  L  A  V  D  N  L  P  Q  I  K  R  L  G  F  K  V  N  V  A  W  I  M  *  W  L  I  L  Q  S  S  W  A  R  G  K  Y  L  *  R :   S  L  K  I  W  E  S  *  S  A  S  L  L  L  R  H  E  I  V  S  H  Y  Q  S  Q  P  P  L  T  A  L  R  F  Q  H  L  Q  T  H  *  M  :  D  Y  I  L  V  L  M  V  C  T  L  Q  K  S  F  T  L  D  E  D  L  V  S  G  K  K  T  V  A  L  R  S  L  H  A  *  N  F  T  S  M  L  K  R  *  N  *  L  E  T  L  M  C  Q  L  V  R :   *  H  S  V  Q  E  L  E  K  S  I  N  F  H  I  K  E  L  F  Q  K  N  L  V  * :   L  L  V  I  G  D  K  E  G  W  Q  S  L  V  S  G  T  P  D  G  L  M  V  N  W  L  S  *  M  E  S :   T  L  K  E  D  P  L  W  V  L  S  T  G  I  L  N  I  I  S  *  Y  S  S  I  G  L  G  C  R  S  E  H  L  C  R  Y  N  F  W  L  F  V  P  G  S  V  L  C  S :   Q  H  D  I  *  Y  H  E  P  *  A  E  E  K  T  Q  D  F  V  *  I  W  S  P  W  Q  L  T  V  L  V  A  S  I  K  P  F  A  L  Y  G  T  N  S  H  F  *  V  D  S  P  Q  Y  L  W  Y  S  K  W  S  R  P  T  S  I  F  L  G  H  *  A  C  T  Y  A  L  Y  L  F  F  F  Q  L  L  Y  Y  S  F  F  S  F  S  K  H  C  C  T  F  K  K  L  G  I  Y  S  L  I  E  S  E  D  R  T  V  H  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113375" stop="114076"/>
                    <exon start="114154" stop="114277"/>
                    <exon start="114438" stop="114607"/>
                    <exon start="115977" stop="116051"/>
                    <exon start="116197" stop="116289"/>
                    <exon start="116396" stop="116488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLKRKPVQQDLPISSSKLPGASSNLDTVGPTENKSDMFDKISDAEEDGEDREDDFGFQNALKDMIPGVQVKVLKVTAPGKVDRDLISKVIEQIMDEEDEDEEKDYDLDSVDDEDEIKVERDGEQNVIELDTDNGVSDGEEQSQIAVRVVVGGLMQNSSNGAHHKDLLRVPARLEKKGHLSFTFTIEEDENKSNFSGSGQSPPNKKARLQGQRSLDHVMVDLAKFMGKGKIPMKVLKDMGELISLTLTQARNRQPLSKSTTFNRIEISTSPDPLNGLYIGAHGLYTSEVIHFRRRFGQWKEDGSPKESSRLEFYEYVEAVKLTGDSYVPAGQIAFRARIGKKYQLPHKGIIPEEFGVIARYRGQGRLAEPGFRNPRWVDGELVILDGKYIKGGPVVGFVYWDPEYHFLVFFHRLRLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115188" e_stop="115572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="115188" e_stop="115572" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115188" stop="115572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTTCTTCAAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTCGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTAAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAAAAAAACTGAAGAAGAAGAACAGAAAAAAATTGTTGAAGAAGAAGAGAGAAAACGACATACCTGGAGAACAGAGAGTCGCGAGGGAAAAGAATCGTG</gDNA_template>
            <first_frame> I  Q  N  T  I  N  Q  N  F  K  S  L  F  F  L  Q  N  Y  P  T  L  E  C  H  N  S  I  Q  C  P  S  F  A  S  N  H  H  *  L  L  N  S  I  N  S  L  F  R  N  I  E  I  N  N  *  E  N  G  K  I  F  F  *  I  N  C  L  *  L  K  K  V  N  Y  T  K  Q  *  A  T  K  H  C  L  Q  P  C  T  K  K  T  Q  L  K  K  K  K  K  L  K  K  K  N  R  K  K  L  L  K  K  K  R  E  N  D  I  P  G  E  Q  R  V  A  R  E  K  N  R  </first_frame>
            <second_frame>  F  K  I  Q  *  T  K  T  L  K  V  Y  S  F  F  K  I  I  Q  P  L  S  V  I  I  P  S  N  V  P  L  L  L  A  T  T  I  D  Y  *  I  Q  L  I  R  C  L  G  I  L  K  *  I  I  R  K  M  E  R  F  F  F  K  L  T  A  Y  N  *  K  K  *  I  T  Q  S  S  K  Q  L  S  T  A  Y  S  L  A  P  K  K  H  N  *  K  K  K  K  N  *  R  R  R  T  E  K  N  C  *  R  R  R  E  K  T  T  Y  L  E  N  R  E  S  R  G  K  R  I  V </second_frame>
            <third_frame>   S  K  Y  N  K  P  K  L  *  K  S  I  L  S  S  K  L  S  N  P  *  V  S  *  F  H  P  M  S  L  F  C  *  Q  P  P  L  I  I  K  F  N  *  F  A  V  *  E  Y  *  N  K  *  L  G  K  W  K  D  F  F  L  N  *  L  P  I  I  K  K  S  K  L  H  K  A  V  S  N  *  A  L  L  T  A  L  H  Q  K  N  T  T  E  K  K  K  K  T  E  E  E  E  Q  K  K  I  V  E  E  E  E  R  K  R  H  T  W  R  T  E  S  R  E  G  K  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="119070" PGL_stop="117446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119070" e_stop="118907"/>
            <exon e_start="118830" e_stop="118647"/>
            <exon e_start="118325" e_stop="118192"/>
            <exon e_start="118092" e_stop="117907"/>
            <exon e_start="117818" e_stop="117446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.128" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119070" e_stop="118907" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118906" i_stop="118831" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118830" e_stop="118647" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118646" i_stop="118326" i_length="321"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118325" e_stop="118192" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.128">
            <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118092" e_stop="117907" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="117818" e_stop="117446" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119070" stop="118907"/>
              <exon start="118830" stop="118647"/>
              <exon start="118325" stop="118192"/>
              <exon start="118092" stop="117907"/>
              <exon start="117818" stop="117446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119051" stop="118907"/>
              <exon start="118830" stop="118815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTGGCAGGGAAAAACAAAGATGGTAATAAAAACAGTAGATCTTTTGAAGAATGAAATTCCCATAGAGGAGGAATCAGTAGTCATCACTGAAGATATTAAGGCTGGACTTGTTCTTGTGGACATAATCAATGGATTTTGTACTGTTGGAGCTGGAAATCTG : GCACCAAGAGAGCCTAACAGGCAGATCAGTGAAATGATTGATGAATCATCAAGGCTTGCTAGAGCGTTTTGTGACAAGAAATTGCCAGTTCTTGCCTTTCTTGATTCACATCAACCTGATAAACTTGAACACCCATATCCTTCTCACTGCATCACTGGCACTGATGAATCCAACTTGGTTCCTG : CACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT : TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG : GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACTTGAACAAACCATGATGTATTGCCAATCTTTTCTTTAGAAAAGACTGCATTTTATGTACTCCAGTAGTTTCTATGATCACAATAATACTACAACATGATGTGCTGTTTCCATTAGATTAACGCAAGAATAGGGTTGCCTTGTCTAGTCAATAGATGTATGTTATGAATGCAGTGTCCATTCATTTCCTTATAATAGGATAGTAGTCTATCCATAAATTTGCCAAAATAATATATTGTACTACAGTTTCAATAGATTTCGTATTGGACATAACAATTGCATCAGAAAATTGAACAG</gDNA_template>
            <first_frame> K  I  G  R  E  K  Q  R  W  *  *  K  Q  *  I  F  *  R  M  K  F  P  *  R  R  N  Q  *  S  S  L  K  I  L  R  L  D  L  F  L  W  T  *  S  M  D  F  V  L  L  E  L  E  I  W :   H  Q  E  S  L  T  G  R  S  V  K  *  L  M  N  H  Q  G  L  L  E  R  F  V  T  R  N  C  Q  F  L  P  F  L  I  H  I  N  L  I  N  L  N  T  H  I  L  L  T  A  S  L  A  L  M  N  P  T  W  F  L  :  H  *  D  G  W  R  R  N  Q  M  L  P  S  G  A  K  I  V  M  M  A  I  L  V  P  F  R  R  M  A  L  M  Y  L  L  I  G  *  R  T  T  K  F  N  F :   C  W  W  *  G  C  A  R  I  F  V  C  W  T  L  F  A  L  H  Y  Q  L  R  T  A  D  S  S  T  L  *  R  M  *  *  F  T  L  R  D  V  P  P  L  I  F  H  S  L  W  Q  D  T  P  K  I  F  H  H  I  H  R :   S  *  C  I  M  W  D  F  I  W  P  R  E  G  V  Q  K  *  L  K  K  F  P  S  T  T  *  T  N  H  D  V  L  P  I  F  S  L  E  K  T  A  F  Y  V  L  Q  *  F  L  *  S  Q  *  Y  Y  N  M  M  C  C  F  H  *  I  N  A  R  I  G  L  P  C  L  V  N  R  C  M  L  *  M  Q  C  P  F  I  S  L  *  *  D  S  S  L  S  I  N  L  P  K  *  Y  I  V  L  Q  F  Q  *  I  S  Y  W  T  *  Q  L  H  Q  K  I  E  Q </first_frame>
            <second_frame>  K  L  A  G  K  N  K  D  G  N  K  N  S  R  S  F  E  E  *  N  S  H  R  G  G  I  S  S  H  H  *  R  Y  *  G  W  T  C  S  C  G  H  N  Q  W  I  L  Y  C  W  S  W  K  S   : G  T  K  R  A  *  Q  A  D  Q  *  N  D  *  *  I  I  K  A  C  *  S  V  L  *  Q  E  I  A  S  S  C  L  S  *  F  T  S  T  *  *  T  *  T  P  I  S  F  S  L  H  H  W  H  *  *  I  Q  L  G  S  C :   T  K  M  G  G  G  G  T  K  C  Y  H  Q  A  Q  R  L  L  *  W  L  Y  W  F  L  S  G  G  W  L  *  C  I  C  *  L  G  E  E  Q  P  S  S  T   : F  V  G  G  R  G  V  H  G  Y  L  C  A  G  L  C  L  L  Y  I  I  S  *  E  P  R  I  P  Q  P  F  K  G  C  S  S  L  L  S  G  M  C  H  L  *  F  S  T  L  Y  G  K  I  H  Q  R  Y  F  T  T  S  T   : G  A  N  A  S  C  G  T  L  Y  G  Q  G  K  G  C  K  N  S  *  R  S  F  L  Q  Q  L  E  Q  T  M  M  Y  C  Q  S  F  L  *  K  R  L  H  F  M  Y  S  S  S  F  Y  D  H  N  N  T  T  T  *  C  A  V  S  I  R  L  T  Q  E  *  G  C  L  V  *  S  I  D  V  C  Y  E  C  S  V  H  S  F  P  Y  N  R  I  V  V  Y  P  *  I  C  Q  N  N  I  L  Y  Y  S  F  N  R  F  R  I  G  H  N  N  C  I  R  K  L  N   </second_frame>
            <third_frame>   N  W  Q  G  K  T  K  M  V  I  K  T  V  D  L  L  K  N  E  I  P  I  E  E  E  S  V  V  I  T  E  D  I  K  A  G  L  V  L  V  D  I  I  N  G  F  C  T  V  G  A  G  N  L  :  A  P  R  E  P  N  R  Q  I  S  E  M  I  D  E  S  S  R  L  A  R  A  F  C  D  K  K  L  P  V  L  A  F  L  D  S  H  Q  P  D  K  L  E  H  P  Y  P  S  H  C  I  T  G  T  D  E  S  N  L  V  P   : A  L  R  W  V  E  E  E  P  N  V  T  I  R  R  K  D  C  Y  D  G  Y  I  G  S  F  Q  E  D  G  S  N  V  F  V  D  W  V  K  N  N  Q  V  Q  L  :  L  L  V  V  G  V  C  T  D  I  C  V  L  D  F  V  C  S  T  L  S  A  K  N  R  G  F  L  N  P  L  K  D  V  V  V  Y  S  Q  G  C  A  T  F  D  F  P  L  S  M  A  R  Y  T  K  D  I  S  P  H  P  Q  :  E  L  M  H  H  V  G  L  Y  M  A  K  G  R  G  A  K  I  A  K  E  V  S  F  N  N  L  N  K  P  *  C  I  A  N  L  F  F  R  K  D  C  I  L  C  T  P  V  V  S  M  I  T  I  I  L  Q  H  D  V  L  F  P  L  D  *  R  K  N  R  V  A  L  S  S  Q  *  M  Y  V  M  N  A  V  S  I  H  F  L  I  I  G  *  *  S  I  H  K  F  A  K  I  I  Y  C  T  T  V  S  I  D  F  V  L  D  I  T  I  A  S  E  N  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119068" stop="118907"/>
                    <exon start="118830" stop="118647"/>
                    <exon start="118325" stop="118192"/>
                    <exon start="118092" stop="117907"/>
                    <exon start="117818" stop="117726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQGKTKMVIKTVDLLKNEIPIEEESVVITEDIKAGLVLVDIINGFCTVGAGNLAPREPNRQISEMIDESSRLARAFCDKKLPVLAFLDSHQPDKLEHPYPSHCITGTDESNLVPALRWVEEEPNVTIRRKDCYDGYIGSFQEDGSNVFVDWVKNNQVQLLLVVGVCTDICVLDFVCSTLSAKNRGFLNPLKDVVVYSQGCATFDFPLSMARYTKDISPHPQELMHHVGLYMAKGRGAKIAKEVSFNNLNKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="118583" e_stop="118192"/>
            <exon e_start="118092" e_stop="117907"/>
            <exon e_start="117818" e_stop="117740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.128" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="118583" e_stop="118192" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.128">
            <gDNA_intron_boundary i_start="118191" i_stop="118093" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118092" e_stop="117907" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117906" i_stop="117819" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="117818" e_stop="117740" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118583" stop="118192"/>
              <exon start="118092" stop="117907"/>
              <exon start="117818" stop="117740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTCCCACCACATGTGATGGAAAAACAGATTCTCACGAAAATAGTAGAAAACTTTACTATTTTTTGCAATGACTTTCATCTTTAAGTATATACATATCCATATTAGCAAAAAAAAGGGGGACAAAACCATCAAAATTTTGGACAATTACTCGATCTGTGATCAATCGTTGCCTAGGAGTTGGGGACTCTGTATTACTCGATTTGTACTGATTATTTGATTTTGTATCATCTACTCTGATGATGAAATTGTTGCAGCACTAAGATGGGTGGAGGAGGAACCAAATGTTACCATCAGGCGCAAAGATTGTTATGATGGCTATATTGGTTCCTTTCAGGAGGATGGCTCTAATGTATTTGTTGATTGGGTGAAGAACAACCAAGTTCAACTT : TTGTTGGTGGTAGGGGTGTGCACGGATATTTGTGTGCTGGACTTTGTTTGCTCTACATTATCAGCTAAGAACCGCGGATTCCTCAACCCTTTAAAGGATGTAGTAGTTTACTCTCAGGGATGTGCCACCTTTGATTTTCCACTCTCTATGGCAAGATACACCAAAGATATTTCACCACATCCACAG : GAGCTAATGCATCATGTGGGACTTTATATGGCCAAGGGAAGGGGTGCAAAAATAGCTAAAGAAGTTTCCTTCAACAACT</gDNA_template>
            <first_frame> *  F  P  T  T  C  D  G  K  T  D  S  H  E  N  S  R  K  L  Y  Y  F  L  Q  *  L  S  S  L  S  I  Y  I  S  I  L  A  K  K  R  G  T  K  P  S  K  F  W  T  I  T  R  S  V  I  N  R  C  L  G  V  G  D  S  V  L  L  D  L  Y  *  L  F  D  F  V  S  S  T  L  M  M  K  L  L  Q  H  *  D  G  W  R  R  N  Q  M  L  P  S  G  A  K  I  V  M  M  A  I  L  V  P  F  R  R  M  A  L  M  Y  L  L  I  G  *  R  T  T  K  F  N  F :   C  W  W  *  G  C  A  R  I  F  V  C  W  T  L  F  A  L  H  Y  Q  L  R  T  A  D  S  S  T  L  *  R  M  *  *  F  T  L  R  D  V  P  P  L  I  F  H  S  L  W  Q  D  T  P  K  I  F  H  H  I  H  R :   S  *  C  I  M  W  D  F  I  W  P  R  E  G  V  Q  K  *  L  K  K  F  P  S  T  T </first_frame>
            <second_frame>  D  F  P  P  H  V  M  E  K  Q  I  L  T  K  I  V  E  N  F  T  I  F  C  N  D  F  H  L  *  V  Y  T  Y  P  Y  *  Q  K  K  G  G  Q  N  H  Q  N  F  G  Q  L  L  D  L  *  S  I  V  A  *  E  L  G  T  L  Y  Y  S  I  C  T  D  Y  L  I  L  Y  H  L  L  *  *  *  N  C  C  S  T  K  M  G  G  G  G  T  K  C  Y  H  Q  A  Q  R  L  L  *  W  L  Y  W  F  L  S  G  G  W  L  *  C  I  C  *  L  G  E  E  Q  P  S  S  T   : F  V  G  G  R  G  V  H  G  Y  L  C  A  G  L  C  L  L  Y  I  I  S  *  E  P  R  I  P  Q  P  F  K  G  C  S  S  L  L  S  G  M  C  H  L  *  F  S  T  L  Y  G  K  I  H  Q  R  Y  F  T  T  S  T   : G  A  N  A  S  C  G  T  L  Y  G  Q  G  K  G  C  K  N  S  *  R  S  F  L  Q  Q   </second_frame>
            <third_frame>   I  S  H  H  M  *  W  K  N  R  F  S  R  K  *  *  K  T  L  L  F  F  A  M  T  F  I  F  K  Y  I  H  I  H  I  S  K  K  K  G  D  K  T  I  K  I  L  D  N  Y  S  I  C  D  Q  S  L  P  R  S  W  G  L  C  I  T  R  F  V  L  I  I  *  F  C  I  I  Y  S  D  D  E  I  V  A  A  L  R  W  V  E  E  E  P  N  V  T  I  R  R  K  D  C  Y  D  G  Y  I  G  S  F  Q  E  D  G  S  N  V  F  V  D  W  V  K  N  N  Q  V  Q  L  :  L  L  V  V  G  V  C  T  D  I  C  V  L  D  F  V  C  S  T  L  S  A  K  N  R  G  F  L  N  P  L  K  D  V  V  V  Y  S  Q  G  C  A  T  F  D  F  P  L  S  M  A  R  Y  T  K  D  I  S  P  H  P  Q  :  E  L  M  H  H  V  G  L  Y  M  A  K  G  R  G  A  K  I  A  K  E  V  S  F  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118362" stop="118192"/>
                    <exon start="118092" stop="117907"/>
                    <exon start="117818" stop="117741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCIIYSDDEIVAALRWVEEEPNVTIRRKDCYDGYIGSFQEDGSNVFVDWVKNNQVQLLLVVGVCTDICVLDFVCSTLSAKNRGFLNPLKDVVVYSQGCATFDFPLSMARYTKDISPHPQELMHHVGLYMAKGRGAKIAKEVSFNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="117552" PGL_stop="118052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117552" e_stop="118052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="117552" e_stop="118052" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117552" stop="118052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAATGAATGGACACTGCATTCATAACATACATCTATTGACTAGACAAGGCAACCCTATTCTTGCGTTAATCTAATGGAAACAGCACATCATGTTGTAGTATTATTGTGATCATAGAAACTACTGGAGTACATAAAATGCAGTCTTTTCTAAAGAAAAGATTGGCAATACATCATGGTTTGTTCAAGTTGTTGAAGGAAACTTCTTTAGCTATTTTTGCACCCCTTCCCTTGGCCATATAAAGTCCCACATGATGCATTAGCTCCTGCAAAATCCAAAATATCAAGACGACTAGTTAAACACTGAATAAGTTGATCAAGAAGTCGACAATTTTGTTATTTGTTATAGATTACCTGTGGATGTGGTGAAATATCTTTGGTGTATCTTGCCATAGAGAGTGGAAAATCAAAGGTGGCACATCCCTGAGAGTAAACTACTACATCCTTTAAAGGGTTGAGGAATCCGCGGTTCTTAGCTGATAATGTAGAGCAAACAAAGT</gDNA_template>
            <first_frame> K  E  M  N  G  H  C  I  H  N  I  H  L  L  T  R  Q  G  N  P  I  L  A  L  I  *  W  K  Q  H  I  M  L  *  Y  Y  C  D  H  R  N  Y  W  S  T  *  N  A  V  F  S  K  E  K  I  G  N  T  S  W  F  V  Q  V  V  E  G  N  F  F  S  Y  F  C  T  P  S  L  G  H  I  K  S  H  M  M  H  *  L  L  Q  N  P  K  Y  Q  D  D  *  L  N  T  E  *  V  D  Q  E  V  D  N  F  V  I  C  Y  R  L  P  V  D  V  V  K  Y  L  W  C  I  L  P  *  R  V  E  N  Q  R  W  H  I  P  E  S  K  L  L  H  P  L  K  G  *  G  I  R  G  S  *  L  I  M  *  S  K  Q  S </first_frame>
            <second_frame>  R  K  *  M  D  T  A  F  I  T  Y  I  Y  *  L  D  K  A  T  L  F  L  R  *  S  N  G  N  S  T  S  C  C  S  I  I  V  I  I  E  T  T  G  V  H  K  M  Q  S  F  L  K  K  R  L  A  I  H  H  G  L  F  K  L  L  K  E  T  S  L  A  I  F  A  P  L  P  L  A  I  *  S  P  T  *  C  I  S  S  C  K  I  Q  N  I  K  T  T  S  *  T  L  N  K  L  I  K  K  S  T  I  L  L  F  V  I  D  Y  L  W  M  W  *  N  I  F  G  V  S  C  H  R  E  W  K  I  K  G  G  T  S  L  R  V  N  Y  Y  I  L  *  R  V  E  E  S  A  V  L  S  *  *  C  R  A  N  K   </second_frame>
            <third_frame>   G  N  E  W  T  L  H  S  *  H  T  S  I  D  *  T  R  Q  P  Y  S  C  V  N  L  M  E  T  A  H  H  V  V  V  L  L  *  S  *  K  L  L  E  Y  I  K  C  S  L  F  *  R  K  D  W  Q  Y  I  M  V  C  S  S  C  *  R  K  L  L  *  L  F  L  H  P  F  P  W  P  Y  K  V  P  H  D  A  L  A  P  A  K  S  K  I  S  R  R  L  V  K  H  *  I  S  *  S  R  S  R  Q  F  C  Y  L  L  *  I  T  C  G  C  G  E  I  S  L  V  Y  L  A  I  E  S  G  K  S  K  V  A  H  P  *  E  *  T  T  T  S  F  K  G  L  R  N  P  R  F  L  A  D  N  V  E  Q  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="121977" PGL_stop="120243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121977" e_stop="121465"/>
            <exon e_start="120907" e_stop="120511"/>
            <exon e_start="120418" e_stop="120243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.865" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="121977" e_stop="121465" e_length="513"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.865">
            <gDNA_intron_boundary i_start="121464" i_stop="120908" i_length="557"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120907" e_stop="120511" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120510" i_stop="120419" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120418" e_stop="120243" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121977" stop="121465"/>
              <exon start="120907" stop="120511"/>
              <exon start="120418" stop="120243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGAATTGCGGATAAATGAGGAATTTTTTTTAAAAAATAGGATGCTTCTTCTGTACCAAAGTTGCCTGCGGTAGAGCATAAAGATGCTATCATCGACCATTTCTTCCCTAAATTTTCCACCAAGAACCAAACTCTCCTCACCAAACCCTGCAATTTTTCCTCAAAACTACAATTTTGTACCTTTTTGTACTGAAAATATGGCTTCTTCTCCATTTTCTGGAGGGTTAATTAACTCCAGGGTTGATTCACCAATTGCAATTGGCTGTAAAAATGCTTCAGTAGATTCTGCTAATAGTGGGTTTTCAACACTGATGGAGTATATGGGTAAAGGAGGGGTTGATGTGGGTGATGACTTGGTGTTATTGTTTGGTCACTTAGAATATGCCTCCAAGAAAATTGCTGCTCTTGTTGCTTGCCCTTTCAATTCCAGCCTCAACAACAATGTTGCCATTGGAAATACGGGGACTTCTTCTGATAGAGATAAGCCCAAGCCTCTTGATATTGTTTCG : AATGAGATTATATTGTCGTCTCTTAGAAATTCGGGAAAAGTTGCTGTAATGGCCTCAGAAGAAGATGAGTGTCCTGTGTGGATAACTGATGATGGCCCGTTTGTGGTTGTCATGGATCCTTTAGATGGTTCCCGAAATATAGATGCCTCAATACCCACTGGGACGATATTTGGGATTTACAGACGTCTTGTGGAAATTGATCATTTGCCGGTGGAGGAAAAGGCTTTACTAAACTGCCTTCAGAGTGGATCAAAGCTTGTTGCAGCAGCTTATGTTCTCTATTCGTCAGCCACAATACTCTGTGCTAGCTTTGGTTCTGGAACACATGCATTCACATTGGATCATACAACCGGAGATTTCCTCTTGACACATCCTAACATCAACATTCCTCCTCGAG : GGCAAATTTATTCAGTTAATGATGCTCGGTATTTTGACTGGCCTGAAGGATTAAGGCAGTATATTGATACGATAAGACAAGGGAAAGGACAACATCCTAAGAAGTACTCAGCCAGGTATATATGTTCTCTAGTGGCTGATTTTCATCGGACTCTGTTATATGGTGGCGTAGCAATG</gDNA_template>
            <first_frame> R  K  E  L  R  I  N  E  E  F  F  L  K  N  R  M  L  L  L  Y  Q  S  C  L  R  *  S  I  K  M  L  S  S  T  I  S  S  L  N  F  P  P  R  T  K  L  S  S  P  N  P  A  I  F  P  Q  N  Y  N  F  V  P  F  C  T  E  N  M  A  S  S  P  F  S  G  G  L  I  N  S  R  V  D  S  P  I  A  I  G  C  K  N  A  S  V  D  S  A  N  S  G  F  S  T  L  M  E  Y  M  G  K  G  G  V  D  V  G  D  D  L  V  L  L  F  G  H  L  E  Y  A  S  K  K  I  A  A  L  V  A  C  P  F  N  S  S  L  N  N  N  V  A  I  G  N  T  G  T  S  S  D  R  D  K  P  K  P  L  D  I  V  S  :  N  E  I  I  L  S  S  L  R  N  S  G  K  V  A  V  M  A  S  E  E  D  E  C  P  V  W  I  T  D  D  G  P  F  V  V  V  M  D  P  L  D  G  S  R  N  I  D  A  S  I  P  T  G  T  I  F  G  I  Y  R  R  L  V  E  I  D  H  L  P  V  E  E  K  A  L  L  N  C  L  Q  S  G  S  K  L  V  A  A  A  Y  V  L  Y  S  S  A  T  I  L  C  A  S  F  G  S  G  T  H  A  F  T  L  D  H  T  T  G  D  F  L  L  T  H  P  N  I  N  I  P  P  R   : G  Q  I  Y  S  V  N  D  A  R  Y  F  D  W  P  E  G  L  R  Q  Y  I  D  T  I  R  Q  G  K  G  Q  H  P  K  K  Y  S  A  R  Y  I  C  S  L  V  A  D  F  H  R  T  L  L  Y  G  G  V  A  M </first_frame>
            <second_frame>  E  K  N  C  G  *  M  R  N  F  F  *  K  I  G  C  F  F  C  T  K  V  A  C  G  R  A  *  R  C  Y  H  R  P  F  L  P  *  I  F  H  Q  E  P  N  S  P  H  Q  T  L  Q  F  F  L  K  T  T  I  L  Y  L  F  V  L  K  I  W  L  L  L  H  F  L  E  G  *  L  T  P  G  L  I  H  Q  L  Q  L  A  V  K  M  L  Q  *  I  L  L  I  V  G  F  Q  H  *  W  S  I  W  V  K  E  G  L  M  W  V  M  T  W  C  Y  C  L  V  T  *  N  M  P  P  R  K  L  L  L  L  L  L  A  L  S  I  P  A  S  T  T  M  L  P  L  E  I  R  G  L  L  L  I  E  I  S  P  S  L  L  I  L  F  R :   M  R  L  Y  C  R  L  L  E  I  R  E  K  L  L  *  W  P  Q  K  K  M  S  V  L  C  G  *  L  M  M  A  R  L  W  L  S  W  I  L  *  M  V  P  E  I  *  M  P  Q  Y  P  L  G  R  Y  L  G  F  T  D  V  L  W  K  L  I  I  C  R  W  R  K  R  L  Y  *  T  A  F  R  V  D  Q  S  L  L  Q  Q  L  M  F  S  I  R  Q  P  Q  Y  S  V  L  A  L  V  L  E  H  M  H  S  H  W  I  I  Q  P  E  I  S  S  *  H  I  L  T  S  T  F  L  L  E  :  G  K  F  I  Q  L  M  M  L  G  I  L  T  G  L  K  D  *  G  S  I  L  I  R  *  D  K  G  K  D  N  I  L  R  S  T  Q  P  G  I  Y  V  L  *  W  L  I  F  I  G  L  C  Y  M  V  A  *  Q   </second_frame>
            <third_frame>   K  R  I  A  D  K  *  G  I  F  F  K  K  *  D  A  S  S  V  P  K  L  P  A  V  E  H  K  D  A  I  I  D  H  F  F  P  K  F  S  T  K  N  Q  T  L  L  T  K  P  C  N  F  S  S  K  L  Q  F  C  T  F  L  Y  *  K  Y  G  F  F  S  I  F  W  R  V  N  *  L  Q  G  *  F  T  N  C  N  W  L  *  K  C  F  S  R  F  C  *  *  W  V  F  N  T  D  G  V  Y  G  *  R  R  G  *  C  G  *  *  L  G  V  I  V  W  S  L  R  I  C  L  Q  E  N  C  C  S  C  C  L  P  F  Q  F  Q  P  Q  Q  Q  C  C  H  W  K  Y  G  D  F  F  *  *  R  *  A  Q  A  S  *  Y  C  F   : E  *  D  Y  I  V  V  S  *  K  F  G  K  S  C  C  N  G  L  R  R  R  *  V  S  C  V  D  N  *  *  W  P  V  C  G  C  H  G  S  F  R  W  F  P  K  Y  R  C  L  N  T  H  W  D  D  I  W  D  L  Q  T  S  C  G  N  *  S  F  A  G  G  G  K  G  F  T  K  L  P  S  E  W  I  K  A  C  C  S  S  L  C  S  L  F  V  S  H  N  T  L  C  *  L  W  F  W  N  T  C  I  H  I  G  S  Y  N  R  R  F  P  L  D  T  S  *  H  Q  H  S  S  S  R :   A  N  L  F  S  *  *  C  S  V  F  *  L  A  *  R  I  K  A  V  Y  *  Y  D  K  T  R  E  R  T  T  S  *  E  V  L  S  Q  V  Y  M  F  S  S  G  *  F  S  S  D  S  V  I  W  W  R  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121899" stop="121465"/>
                    <exon start="120907" stop="120511"/>
                    <exon start="120418" stop="120243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIKMLSSTISSLNFPPRTKLSSPNPAIFPQNYNFVPFCTENMASSPFSGGLINSRVDSPIAIGCKNASVDSANSGFSTLMEYMGKGGVDVGDDLVLLFGHLEYASKKIAALVACPFNSSLNNNVAIGNTGTSSDRDKPKPLDIVSNEIILSSLRNSGKVAVMASEEDECPVWITDDGPFVVVMDPLDGSRNIDASIPTGTIFGIYRRLVEIDHLPVEEKALLNCLQSGSKLVAAAYVLYSSATILCASFGSGTHAFTLDHTTGDFLLTHPNINIPPRGQIYSVNDARYFDWPEGLRQYIDTIRQGKGQHPKKYSARYICSLVADFHRTLLYGGVAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121311" e_stop="121058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="121311" e_stop="121058" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121311" stop="121058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACCTTTTAACTTCTACTGCACTGTATAGAGAGACCCAATAAAGTGGAATTGGGATTGATGAATTATTGATTGATTGATGTTATTTATAGGTTGCTGTTAAATTAGGTCCTTGCTCTGATACCTTGTTAAATTAGGTCTTTCGTGTAACTCACATCTCAAAAGCTAGTTCAAAGAGAGTAGGATTGTCCAAGCCTTAGAAGGAGTTCACTCATGTCATTAACCATCGGTGTGAGACTTTTGTCATTCTTTTA</gDNA_template>
            <first_frame> Q  T  F  *  L  L  L  H  C  I  E  R  P  N  K  V  E  L  G  L  M  N  Y  *  L  I  D  V  I  Y  R  L  L  L  N  *  V  L  A  L  I  P  C  *  I  R  S  F  V  *  L  T  S  Q  K  L  V  Q  R  E  *  D  C  P  S  L  R  R  S  S  L  M  S  L  T  I  G  V  R  L  L  S  F  F   </first_frame>
            <second_frame>  K  P  F  N  F  Y  C  T  V  *  R  D  P  I  K  W  N  W  D  *  *  I  I  D  *  L  M  L  F  I  G  C  C  *  I  R  S  L  L  *  Y  L  V  K  L  G  L  S  C  N  S  H  L  K  S  *  F  K  E  S  R  I  V  Q  A  L  E  G  V  H  S  C  H  *  P  S  V  *  D  F  C  H  S  F  </second_frame>
            <third_frame>   N  L  L  T  S  T  A  L  Y  R  E  T  Q  *  S  G  I  G  I  D  E  L  L  I  D  *  C  Y  L  *  V  A  V  K  L  G  P  C  S  D  T  L  L  N  *  V  F  R  V  T  H  I  S  K  A  S  S  K  R  V  G  L  S  K  P  *  K  E  F  T  H  V  I  N  H  R  C  E  T  F  V  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0245N21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="125249" PGL_stop="125882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125249" e_stop="125882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="125249" e_stop="125882" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125249" stop="125882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAAGTCCTAAGCTACTACACTAATGCACGAAAACTCTGTTGCCGCCTCCGTCCCCAATTCCTCCACCGCCGCCGGTGCCGTTGGTGTTCCCGCCGTGGTCAACAACTCACACCTTCCACCACAACCATTAGCGAGACGTGTTGTGTTCCGACTTCTGTGCCATGCTTCACGCGTCGGTGGAGTTATCGGAAAATCAGGGTCCATTATTAGACAACTACAACAAGACACCTCCGCTAAGATTCACATTGATGTGTCCGCACCAAACGACCACAATCGACTCATTGTAGTAGTAGCCCCTGCTTCAGTAAACAAGAGGATAAGGCTACTGGGCCCCATTGGGGATAACCAGCGTAATGAAGAAATTGATGAAATAGAGGTTTCGGCTGCACAAGAAGCACTTGTTAGGGTTTTTGAGAGAGTTATAGAAGTAACAGCGGAAAATAATGGACTAGTTTTGGGTGTGGAGAATGTTGTGTCCTGTAGGTTATTAGTAAAGGGGAATCAAGTGGGGGCTTTGATGGGCAAAGGTGGAAAAGTAATAGATACAATAAGAAGAGAAAATGGATGTAGGATTAAGGTATTAACTTCAGGGAAGATGCCAAGTTGTGCTTCGCCCAATGATGAAATTGT</gDNA_template>
            <first_frame> K  E  S  P  K  L  L  H  *  C  T  K  T  L  L  P  P  P  S  P  I  P  P  P  P  P  V  P  L  V  F  P  P  W  S  T  T  H  T  F  H  H  N  H  *  R  D  V  L  C  S  D  F  C  A  M  L  H  A  S  V  E  L  S  E  N  Q  G  P  L  L  D  N  Y  N  K  T  P  P  L  R  F  T  L  M  C  P  H  Q  T  T  T  I  D  S  L  *  *  *  P  L  L  Q  *  T  R  G  *  G  Y  W  A  P  L  G  I  T  S  V  M  K  K  L  M  K  *  R  F  R  L  H  K  K  H  L  L  G  F  L  R  E  L  *  K  *  Q  R  K  I  M  D  *  F  W  V  W  R  M  L  C  P  V  G  Y  *  *  R  G  I  K  W  G  L  *  W  A  K  V  E  K  *  *  I  Q  *  E  E  K  M  D  V  G  L  R  Y  *  L  Q  G  R  C  Q  V  V  L  R  P  M  M  K  L  </first_frame>
            <second_frame>  R  K  V  L  S  Y  Y  T  N  A  R  K  L  C  C  R  L  R  P  Q  F  L  H  R  R  R  C  R  W  C  S  R  R  G  Q  Q  L  T  P  S  T  T  T  I  S  E  T  C  C  V  P  T  S  V  P  C  F  T  R  R  W  S  Y  R  K  I  R  V  H  Y  *  T  T  T  T  R  H  L  R  *  D  S  H  *  C  V  R  T  K  R  P  Q  S  T  H  C  S  S  S  P  C  F  S  K  Q  E  D  K  A  T  G  P  H  W  G  *  P  A  *  *  R  N  *  *  N  R  G  F  G  C  T  R  S  T  C  *  G  F  *  E  S  Y  R  S  N  S  G  K  *  W  T  S  F  G  C  G  E  C  C  V  L  *  V  I  S  K  G  E  S  S  G  G  F  D  G  Q  R  W  K  S  N  R  Y  N  K  K  R  K  W  M  *  D  *  G  I  N  F  R  E  D  A  K  L  C  F  A  Q  *  *  N  C </second_frame>
            <third_frame>   G  K  S  *  A  T  T  L  M  H  E  N  S  V  A  A  S  V  P  N  S  S  T  A  A  G  A  V  G  V  P  A  V  V  N  N  S  H  L  P  P  Q  P  L  A  R  R  V  V  F  R  L  L  C  H  A  S  R  V  G  G  V  I  G  K  S  G  S  I  I  R  Q  L  Q  Q  D  T  S  A  K  I  H  I  D  V  S  A  P  N  D  H  N  R  L  I  V  V  V  A  P  A  S  V  N  K  R  I  R  L  L  G  P  I  G  D  N  Q  R  N  E  E  I  D  E  I  E  V  S  A  A  Q  E  A  L  V  R  V  F  E  R  V  I  E  V  T  A  E  N  N  G  L  V  L  G  V  E  N  V  V  S  C  R  L  L  V  K  G  N  Q  V  G  A  L  M  G  K  G  G  K  V  I  D  T  I  R  R  E  N  G  C  R  I  K  V  L  T  S  G  K  M  P  S  C  A  S  P  N  D  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0245N21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125263" stop="125880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATTLMHENSVAASVPNSSTAAGAVGVPAVVNNSHLPPQPLARRVVFRLLCHASRVGGVIGKSGSIIRQLQQDTSAKIHIDVSAPNDHNRLIVVVAPASVNKRIRLLGPIGDNQRNEEIDEIEVSAAQEALVRVFERVIEVTAENNGLVLGVENVVSCRLLVKGNQVGALMGKGGKVIDTIRRENGCRIKVLTSGKMPSCASPNDEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 71 chains have been computed
$ 
$ memory statistics:
$ 62632 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 2159 bytes was the average size of a spliced alignment
$ 26152 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1634 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 78 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:48:47
-->
