##gff-version 3
##sequence-region C01HBa0101I08.1 1 3551
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match	2402	3015	0.997	-	0	ID=SGN-E396832_alignment_1;Target=SGN-E396832 1 613 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match_part	2402	3015	0.997	-	0	ID=GTH_SGN_E_tom_potato_match_part_1;Target=SGN-E396832 1 613 +;Parent=SGN-E396832_alignment_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match	2402	2936	0.978	-	0	ID=SGN-E394904_alignment_1;Target=SGN-E394904 1 535 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match_part	2402	2936	0.978	-	0	ID=GTH_SGN_E_tom_potato_match_part_2;Target=SGN-E394904 1 535 +;Parent=SGN-E394904_alignment_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match	2402	2877	0.992	-	0	ID=SGN-E394528_alignment_1;Target=SGN-E394528 1 477 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match_part	2402	2877	0.992	-	0	ID=GTH_SGN_E_tom_potato_match_part_3;Target=SGN-E394528 1 477 +;Parent=SGN-E394528_alignment_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match	2481	3065	0.998	-	0	ID=SGN-E379999_alignment_1;Target=SGN-E379999 1 584 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	match_part	2481	3065	0.998	-	0	ID=GTH_SGN_E_tom_potato_match_part_4;Target=SGN-E379999 1 584 +;Parent=SGN-E379999_alignment_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	gene	2402	3065	.	-	0	ID=GTH_SGN_E_tom_potato_gene_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	mRNA	2402	3065	.	-	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato_potato	exon	2402	3065	0.998	-	0	ID=GTH_SGN_E_tom_potato_exon_1;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C01HBa0101I08.1	RepeatMasker	nucleotide_motif	143	265	446	-	0	ID=Copia00151_alignment_1;Target=Copia00151 10053 10176 -
C01HBa0101I08.1	RepeatMasker	nucleotide_motif	3217	3300	319	+	0	ID=Copia00105_alignment_1;Target=Copia00105 8585 8663 +
C01HBa0101I08.1	RepeatMasker	nucleotide_motif	3450	3551	578	-	0	ID=Copia00143_alignment_1;Target=Copia00143 102 204 -
C01HBa0101I08.1	Contigs	contig	1	3551	.	.	0	ID=contig1_1;length=3551
C01HBa0101I08.1	BLAST_tomato_bac_ends	clone_end	517	1088	1070	-	0	ID=C01HBa0101I08.1-LE_HBa0223K24_SP6_401011_1;blast_gaps=1;Target=LE_HBa0223K24_SP6_401011 1 571 +;is_problematic=0;blast_percent_identity=98.78;blast_mismatches=6;blast_evalue=0.0
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match	2402	3015	0.997	-	0	ID=SGN-E396832_alignment_2;Target=SGN-E396832 1 613 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match_part	2402	3015	0.997	-	0	ID=GTH_SGN_E_tom_match_part_1;Target=SGN-E396832 1 613 +;Parent=SGN-E396832_alignment_2
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match	2402	2936	0.978	-	0	ID=SGN-E394904_alignment_2;Target=SGN-E394904 1 535 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match_part	2402	2936	0.978	-	0	ID=GTH_SGN_E_tom_match_part_2;Target=SGN-E394904 1 535 +;Parent=SGN-E394904_alignment_2
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match	2402	2877	0.992	-	0	ID=SGN-E394528_alignment_2;Target=SGN-E394528 1 477 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match_part	2402	2877	0.992	-	0	ID=GTH_SGN_E_tom_match_part_3;Target=SGN-E394528 1 477 +;Parent=SGN-E394528_alignment_2
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match	2481	3065	0.998	-	0	ID=SGN-E379999_alignment_2;Target=SGN-E379999 1 584 +
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	match_part	2481	3065	0.998	-	0	ID=GTH_SGN_E_tom_match_part_4;Target=SGN-E379999 1 584 +;Parent=SGN-E379999_alignment_2
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	gene	2402	3065	.	-	0	ID=GTH_SGN_E_tom_gene_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	mRNA	2402	3065	.	-	0	ID=GTH_SGN_E_tom_gene_1_AGS_1;Parent=GTH_SGN_E_tom_gene_1
C01HBa0101I08.1	GenomeThreader_SGN_E_tomato	exon	2402	3065	0.998	-	0	ID=GTH_SGN_E_tom_exon_1;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C01HBa0101I08.1	AUGUSTUS_tom_cdna	gene	979	1117	0.96	+	.	ID=g1_1
C01HBa0101I08.1	AUGUSTUS_tom_cdna	transcript	979	1117	0.96	+	.	ID=g1.t1_1;Parent=g1_1
C01HBa0101I08.1	AUGUSTUS_tom_cdna	intron	1	978	0.96	+	.	Parent=g1.t1_1
C01HBa0101I08.1	AUGUSTUS_tom_cdna	CDS	979	1117	0.96	+	1	ID=g1.t1.cds_1;Parent=g1.t1_1
C01HBa0101I08.1	AUGUSTUS_tom_cdna	stop_codon	1115	1117	.	+	0	Parent=g1.t1_1
C01HBa0101I08.1	AUGUSTUS_tom_pot_cdna	gene	979	1117	0.96	+	.	ID=g1_2
C01HBa0101I08.1	AUGUSTUS_tom_pot_cdna	transcript	979	1117	0.96	+	.	ID=g1.t1_2;Parent=g1_2
C01HBa0101I08.1	AUGUSTUS_tom_pot_cdna	intron	1	978	0.96	+	.	Parent=g1.t1_2
C01HBa0101I08.1	AUGUSTUS_tom_pot_cdna	CDS	979	1117	0.96	+	1	ID=g1.t1.cds_2;Parent=g1.t1_2
C01HBa0101I08.1	AUGUSTUS_tom_pot_cdna	stop_codon	1115	1117	.	+	0	Parent=g1.t1_2