<?xml version="1.0"?>
<!-- GAME-XML generated by Bio::SeqIO::game::gameWriter -->
<!-- Questions: mckays@cshl.edu -->
<game version="1.2">
  <seq id="C04HBa0058E11.1" length="4139" type="dna" focus="true">
    <name>C04HBa0058E11.1</name>
    <residues>
      TTAAAAAGTTTAAAAATATTATTATCAAATTAAAAATATGATATGATATCTTAGTAGGAG
      AGAAAAATGTATATTTTGAGTCTAAGTATATTTTTAAAAAATAGCTAAAATTGGATGATA
      TTGTAATCCTTAAACATATATAAAAAATATTAGTAGATAATTTCCCAAACATAAATGATT
      ATCTGGAGAAATTACTCTACTATATTCACCCCACCTACAAGTTAGTAAAGTGTGTGTACA
      CTTTTTGTAACCAGAAGGAATAAAAAAGGCATTAATTTTATCACGATTCACAACCTAGAA
      TTTACAAATGAGAGAATCACATTAACGTACTATTTAAGATTTAATATTATAATAGGAGTT
      TTCACTTTCAAAATATAACAGTAATCTTTTACCAAAATCTAATAAAAGAGGTTTAAAAAA
      ATGGTAAAGCTATTTTCTCAAAACAAGGAAGTAGCATTCTCCCTTGCTATTTATTCCATA
      AATTTCTCCTAAATTTTTGCATTCCTCTATTCTCTTCTTTGAATAAAAATATAAAGGCAT
      GTTAAATGATTTTTTCTCCTTCAAATACAATAATCAGTATTTTGTTCGACATTTATCCCA
      TAAATTTCTCCTATATTTTTGTCTTCTAATATTCTTTACTTCGAATAAAACAAAAGGCAT
      GATAAATGTCTTTCTCTTCAAACATGATAGTCAATACTCCCTCCCTCGGAGTTGTTCGGA
      TGGTAAGCACCCTCACTTTCAATTTGAATATTGCAAGTTTGAGTCACTGAGGAAGGAAAA
      GGGGTGGGAGTTCCTAGTGGAGGGTGAAAAAAAATTATCTCCCTAATTAGCTGTCTATTT
      TTAAATTGACACTATTTTACCCTACTAATTTATAAAGTCAAATGGATTAAAAATTTAAGA
      TTTTCAATTCTTGATTTGTCAAAATATAATTAGGTATAACTAAAAAAGTAAAAATGAACA
      AATAATTAAGGATAGAGAAACTATTTTTCATGATACTTATATCATAAATTTCTCCTAGAC
      TTTTGTCTTCCCTTACTCTCTCATTTGAATATCTATTTAGAAATCCTGTTAAACATACCT
      TCATTTTCTCTTCTTTTTTTTCAAGCTCCATTACATTATTAAATTCACTTCATTAAAAAA
      ATTATTTATGGGGAAAGATCCCCTCTAATGAAAAAGTATGTTCAGTGTTGTTCACTAACA
      TTGTTGATCTTTTGCCATATATCCATCTAAATCTTCTATGATTGAGATTCGGGTAAAATT
      TATCCGCATCGATGTTTAACCAATTCAATACATGCATGTCATGTGTTTAAAAATATTGTT
      CATTTTATTTATCCTTAATTAATTAACACGTGTTTACTTCATTAAATCACATAATAATGA
      AAATTGAATTAGTTTGATGTGAAGCATCCGATACAGGTGAGTTTTTTCCTTGAGATTTAG
      TCTTGTTCTATATAGTTAAAATTGATAAAATTATTATGGACATAAATAATGGAAAATTAC
      TTTAGCTAACGACAATTGTTTCTTCCCAATTCATTTCGTTGCTATTAAGATACTGACAAT
      AAAATGCGTGAGTTTGAAAATTGAGCTATCTAGCCGAGATAAGTTGGCCTTCGTCCCATC
      CTTACTAACTAAAAGTTTCTTTTACGTAGGAAAAAATTGGGGGATGTCGCCCCACAACGG
      GAATTGTTGTAGTTGCTCTTAAGTCGTTAGAGCAGACAATATGTCACACTCCGAGTCTAC
      ACCCTGAACGAAATTGACACTCGAAAATCATTGTTGGTTTCCAAGCAAACCCTTGGTCTG
      GCTCATTACTCAGCGGAAGACTTATTCAAGCAAAATGAATACTCATGATGCAAAATAACT
      TTAAAAACTTAATTTAAACTTGACTCTAATAATCGTTTGAGAATAATTTAACAAGTATTA
      GTTAGATGTCTCATGGACTCAAAACATTACAACAACAGAGGAAATAATGATAGACTCGAC
      CTGAACTATGTATAAAGCTTCTACTATTCAGAAGGATTACCGAGACAAGATTCATAACAT
      CTTAACAACTGAAAGTACAAAAATAAAACCATCCGGAAGCAAGAAGGCTAACCAAAACTA
      ACTAGAATTGTAAGTGGTATCAAAGGAGCATCTGTTGATGATCCTGAATATATCTATCTG
      CATCATAAAAGATGCATGCCAAATGGCTTCAGTACATGGAATGTACGCGCATGTAAGAGA
      AATTCTAAAGTATAAACATAAGCTTGAAATGATAGAAAAGAAACATACTTACCTCTTCTC
      AAACTAACTTAACTCAACTCAAACTCTCCTCAAGGGTAGGATACTTAGCTCAGGAACAAG
      ATACTCAACTCGAAGATACTTAGTTAAGATACTCAACTCAAAGATACTCAATACAAGATA
      CTTAAGTAAATCAACAATAAAAAATAGATGCAATATATGGAAAGCTTTTAAAACAATAGA
      TAACAACTCAATTTGTATGTAAAAATACAATAATGACTCAACTGTATGTAAAATACAATA
      ATAACTTTTATTTAGGAGATACTCTAATCAATAACTATCATTATGATCTATGTAATGATA
      CACCATCTCCTTCACGTTGCCAACATTTTCCTATACCTTTATGGAGTATAATGTTGGGAA
      AGACAAGGCACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTAT
      ACTTTCCCTTTTCGATTTGAACCAAGAGAAGACAAACAACCACAAGCAATATGATAGTAA
      GGCAGCAAGTAATTCAATCAAACAAATATAACAAGGCAATGATAAACCAATCACACAAGA
      CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAG
      CTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTG
      CCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAA
      ATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATC
      CAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAG
      CTCAATCTGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCAATCTGCTCTTTTT
      CTCTCTTTTTGGCTGCTAAAAAATTCTCTGTGTATTTGAAAATAAGACCTAAATAGGCTT
      ATATTTGCCTCATAAGAATGGGCCTATGAAAAAATGGGTTGGTCCAAATTGGGCTTTTAT
      TTATCCACATAGGAAGGGAAAAAAGACCCATAACCCAACAATTCTCCCCCTCACGACTAT
      GTGGAGGAGACCGCCATCCCGGCGACCATGCAACAATCTTCAAACTTCCCTCTTGGCAAA
      GCTTTAGTCATCATATCGGAACCATTGTCATTTGTATGAATCTTTTCAAGCTCAAGCAAC
      TTAGAATCCAACACATCTCGAATCCAATGGTATCTCACATCAATGTGTTTAGACCGACCA
      TGGAACGTAGAATTCTTGCCAAGATGTATAGCACTTTGACTGTCACAATAAAGCACATAC
      CTCTCTTGAGCACAACCAAGTTCCCCCAAGAATCTCTTCATCCAAAGCAATTCTTTACAA
      GCTTCAACGACAACAATAAGCTCAGCTTCTGTAGTAGATAGAGCAACACATTTTTGCAAC
      CTAGATTGCCAAGACACAGCTCCCCCTGCAAAAGTAACCAAGTACCCTGAAGTAGACTTG
      CGAGTATCGACATCACCAGCCATGTCTGAATCAGTATAACCACAAAGAATAGGCTTCCCT
      GTACCAAAACACACACTCAGACTAGAAGTTCCACAAAGATATCTCATAACCCACTTCACA
      GCATTCCAATGTTCTCTTCCCGGATTAGAAAGAAAACGACTAACAACTCCAACAGCGTGA
      GCAATATTCGGTCTTGTACAAACCATCGCATACATCAAACTACCAACAGCTGAAGCATAA
      GGAACTTTCTTCATATCTTTCTTCTCATCATCACTAGAAGGACACTGTTTCGTGCTCAAT
      TTGAAGTGCATAGCTAAAGGTGTATGACAACCTTAGCTTTGTCCATGCTGAATCTGCGA
    </residues>
  </seq>

  

  
  <computational_analysis>
    <program>RepeatMasker</program>
    <database>tomato repeats master</database>
    <result_set>
      <name>Gypsy00077 5249 5797 1</name>
      <result_span>
        <name>Gypsy00077 5249 5797 1</name>
        <type>nucleotide_motif</type>
        <score>508</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>1724</start>
            <end>2282</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
  </computational_analysis>
  <computational_analysis>
    <program>RepeatMasker</program>
    <database>tomato repeats master</database>
    <result_set>
      <name>Gypsy00046 4647 4748 -1</name>
      <result_span>
        <name>Gypsy00046 4647 4748 -1</name>
        <type>nucleotide_motif</type>
        <score>549</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>1821</start>
            <end>1721</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>TOTO1_LP_I 1709 3243 -1</name>
      <result_span>
        <name>TOTO1_LP_I 1709 3243 -1</name>
        <type>nucleotide_motif</type>
        <score>12610</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>4139</start>
            <end>2632</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
  </computational_analysis>

  

  

  
  <computational_analysis>
    <program>BLAST_tomato_bacs</program>
    <database>Tomato BAC sequences</database>
  </computational_analysis>
  <computational_analysis>
    <program>BLAST_tomato_bacs</program>
    <database>Tomato BAC sequences</database>
    <result_set>
      <name>match_1</name>
      <result_span>
        <type>match</type>
        <score>1984</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>955</start>
            <end>2000</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_2</name>
      <result_span>
        <type>match</type>
        <score>3965</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2140</start>
            <end>4139</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
  </computational_analysis>

  

  
  <computational_analysis>
    <program>BLAST_tomato_bac_ends</program>
    <database>Tomato Combined Clone-end Sequences (BACs and Fosmids)</database>
  </computational_analysis>
  <computational_analysis>
    <program>BLAST_tomato_bac_ends</program>
    <database>Tomato Combined Clone-end Sequences (BACs and Fosmids)</database>
    <result_set>
      <name>match_1</name>
      <result_span>
        <type>match</type>
        <score>755</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3724</start>
            <end>4139</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_2</name>
      <result_span>
        <type>match</type>
        <score>434</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2927</start>
            <end>3164</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_3</name>
      <result_span>
        <type>match</type>
        <score>1431</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>1523</start>
            <end>2244</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_4</name>
      <result_span>
        <type>match</type>
        <score>1330</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>1294</start>
            <end>1999</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_5</name>
      <result_span>
        <type>match</type>
        <score>938</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2323</start>
            <end>2810</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_6</name>
      <result_span>
        <type>match</type>
        <score>827</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3684</start>
            <end>4139</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_7</name>
      <result_span>
        <type>match</type>
        <score>844</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2704</start>
            <end>3165</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_8</name>
      <result_span>
        <type>match</type>
        <score>1306</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3443</start>
            <end>4113</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_9</name>
      <result_span>
        <type>match</type>
        <score>912</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2682</start>
            <end>3164</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_10</name>
      <result_span>
        <type>match</type>
        <score>747</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2758</start>
            <end>3166</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_11</name>
      <result_span>
        <type>match</type>
        <score>892</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3643</start>
            <end>4131</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_12</name>
      <result_span>
        <type>match</type>
        <score>1146</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3555</start>
            <end>4139</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_13</name>
      <result_span>
        <type>match</type>
        <score>1154</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3550</start>
            <end>4139</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_14</name>
      <result_span>
        <type>match</type>
        <score>912</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2629</start>
            <end>3127</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_15</name>
      <result_span>
        <type>match</type>
        <score>771</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3352</start>
            <end>3772</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_16</name>
      <result_span>
        <type>match</type>
        <score>759</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2768</start>
            <end>3166</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_17</name>
      <result_span>
        <type>match</type>
        <score>999</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>3636</start>
            <end>4139</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
    <result_set>
      <name>match_18</name>
      <result_span>
        <type>match</type>
        <score>1306</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>2167</start>
            <end>2825</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
  </computational_analysis>

  

  

  

  

  

  

  

  

  

  

  

  
  <computational_analysis>
    <program>BLAST_ath_pep</program>
    <database>AGI Proteins (arabidopsis.org)</database>
  </computational_analysis>
  <computational_analysis>
    <program>BLAST_ath_pep</program>
    <database>AGI Proteins (arabidopsis.org)</database>
    <result_set>
      <name>match_1</name>
      <result_span>
        <type>match</type>
        <score>103</score>
        <seq_relationship type="query" seq="C04HBa0058E11.1">
          <span>
            <start>4019</start>
            <end>3495</end>
          </span>
        </seq_relationship>
      </result_span>
    </result_set>
  </computational_analysis>

  

  
</game>
