<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:24:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268096" ref_strand="-" ref_description="SGN-E268096 [cLEI-15-C13]">
      <seq>catgtccagcccattatcaaaaacataattatactacccacacgatgtctacagacctctaagagtatagtagtgaaacttgacgggacagggccccgcatacccatagacaagcaaaagactacataagaagttatgtaccaaaacgactgggctccggaacagtggagctctcccaaacagcagagtagatatcctaggcgggaggatcaccaaactgagcgtctacacccggccctctagtgagggactcagtgaaatagtcatcacatcatctccgtcatcatcatcatcataaccatcctcatcaccaatcatatatataatatacattcccggccctctagtgagggactcggtgacatatgcaagaaactccgcacgaacattacccggcccgggactcggtgcaatgataaatgactcaatttctttgcagctgctgtccaagagtttaatggctggttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5962" stop="4758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5662" g_stop="5436" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5435" i_stop="5261" i_length="175">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.815" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5260" g_stop="5058" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="429" r_length="202" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E268096" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268096" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5662" e_stop="5436"/>
          <exon e_start="5260" e_stop="5058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCCAGACCATTATCCAAAACATATATATACAACCCACATAATGTCCACAGACCTCTAAGAGTACATTAGTGAAACTCGACGGGACAGGGCCCCGCCATACCCATAGACGAGCAAAAGACTACACAA-AAGTTATGTACCAAAACAACTGGGCTCCGGAACAGTGGAGCTCTCCCAATCAGCAGAGTAGATATCCTAGGCGGGAGGATCACCGAACTGCGCGTCTACACCTGCGGGCATGAAACGCAGCCCCCCAAGGAAAGGGGGGTCAGTACGGACAATGTACTGAGTATGTAAAGCATAAGGTAAAGATGACAGGATACCAATGTGGCAAGTCGAAACAAAATATCGCTACACATATACTTTTTAAGTGAAAATCATGCATATATTTAACATTTAAGGTGCCCAGCTTCCCTAGTAAGGGGCTCGGCAAAATAATCATCACGTCATCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATACCCGGCCCTCTAGTGAGGAACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCGGCCCGGGACTCGGTGAAATGATAAATGACTCTAT</genome_strand>
        <mrna_strand>CATGTCCAGCCCATTATCAAAAACATAATTATACTACCCACACGATGTCTACAGACCTCTAAGAGTATAGTAGTGAAACTTGACGGGACAGGGCCCCG-CATACCCATAGACAAGCAAAAGACTACATAAGAAGTTATGTACCAAAACGACTGGGCTCCGGAACAGTGGAGCTCTCCCAAACAGCAGAGTAGATATCCTAGGCGGGAGGATCACCAAACTGAGCGTCT...............................................................................................................................................................................ACACCCGGC-CCTCTAGTGAGGGACTCAGTGAAATAGTCATCACATCATCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATTCCCGGCCCTCTAGTGAGGGACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCGGCCCGGGACTCGGTGCAATGATAAATGACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365858" ref_strand="+" ref_description="SGN-E365858 [cLPT-8-J18]">
      <seq>tttgatgtactctggctggaattctgagtagtaccagggacctcatcacatttttcaacctcatcagcctcttcaggtagactatgattttgatcatcacagtcatttttcagttgttgttctgcatcatcttcacttccttcaattttctgcgaattgaataatttgatcacataatcttcatcatttgatccattatttttcaagcttgcatcttcatcaaatacaacatgaatgctttcttcaatgcattgagttcggacgctgaatattttgtaagccttactcgatgaagaatatccaacaaatactccttcatcactcctaagatcaaattttccagatcatccttgccattggtcagcacaaaacacctgcatgcaaattctctaagatagctgagcataggctttctgttgttgatcaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11609" stop="10578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11309" g_stop="10878" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E365858" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11309" e_stop="10878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGTACTCTGACTGGAATTCAGAGTAGTACCATGTACCTCATCACACTTTTCCACTTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAAGTCATTTTTCAATTGTTGTTCTGCGTCAGCTTCACTTCCTTCAATTTTCTGTGATTTGAACAGTTTGATCACATCATCTTCATCATTTGATCCAGTATTTTTCAAGCTTCCATCTTCATCAAATACAACATTAGTGGTTTTTTCAATGCATTGAGTTCTTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAACACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATTATCCTTTCCATTGTTTAGCACAAAACACCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAGCTCA</genome_strand>
        <mrna_strand>TTTGATGTACTCTGGCTGGAATTCTGAGTAGTACCAGGGACCTCATCACATTTTTCAACCTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCACAGTCATTTTTCAGTTGTTGTTCTGCATCATCTTCACTTCCTTCAATTTTCTGCGAATTGAATAATTTGATCACATAATCTTCATCATTTGATCCATTATTTTTCAAGCTTGCATCTTCATCAAATACAACATGAATGCTTTCTTCAATGCATTGAGTTCGGACGCTGAATATTTTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAAGATCAAATTTT-CCAGATCATCCTTGCCATTGGTCAGCACAAAACACCTGCATGCAAATTCTCTAAGATAGCTGAGCATAGGCTTTCTGTTGTTGATCAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697061" ref_strand="+" ref_description="SGN-E697061 [LH_Ea10M03](-)">
      <seq>gctgttttgcttttctttttatgagattttgtaagctcctcgcttagctcatacggttttttttttttcttttgaaatcgttgttccagtttaattcaaatcctcaaatgggtgtacttttattttttttatttctctgttttgctcaagattcgtttggttattttatcacttcatgtgctaatctattctctttttattgcatgtaaaactattctcgagtcctcatggacctcactcaaattccttgcaccttctcgttgagccataaagtctcaaaacacctttctcgagtcagtcaaccgccttaaaggatgtacaggtcggaaaaaaaaaactcagcagaaactgcttgaaaaaattgttgcagggatttgaagaagatgtatacagcagtatacatattttatacacaattatatgctgatatacaggttgaaggcgtacaggcggatccaaattcgaaatctgggtttttagcagtgaacatatgctgctaaaagggaactttcaactttcaaaagttgaaaaacaggatgatatacagcctgtatacactgatatacagaaatgttataccttaaataggtgtaaaaaatatgaatggcagcaggcgtgtaaaaattcgaactccatgaagatcgaaggagcttgaggaaggcgtactagaagattttttatttatttattaagttgtatttactttgggcataagccctaggcatttttgatttccttgtattcattcttgtatgtttaaacggggacaggtacgaaagaaagaaatgggttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24420" stop="23025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24120" g_stop="23315" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E697061" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24120" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGCTTTTCTTTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATAC-G-AGTTTTTTTTTCTTTTGAAATCGCTGTTCCAATTTAATTCAAATCCTCAAATGGGTGTACTTTTCTTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGATTATTTTATCGCTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCCAATTCCTTGCACCTTCTCGTTGAGCCATAAAGGCTCAAAACACCTTTCTCGAGTCAGCCAACCTCCTGAAAGTATGTACAGGTCGGAGAAAAAAAAACCCAGCAGAAACTGCTTGAAAAAATTGTTGCAGAGATTTGAAGAAGATGTATACAGCAGTATACATATTTTATACA-TTGTATACACTGATATACAGGTTGAAGGCGTACAAGCAGATCCAAATTCGAAATCTGGGATTGTAGCAGTGAACATATGCTTTTAAAAGGGAACTTTCAACTTTTGAAAGTTGAAAAACAAGCTGATATACAGCCTGTATACACTGATATACAGAAACATTATACCTTAAATAGGTGTAAAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTCCATGAAGATCGAAGGAGCTTGAGGAAGGCGTACTAGAAGA-TTTTTATTTATTTATTAAGTTGTATTTACTTTGGGCATAAGCCCTTGTCATTTTTGCTTTCCTTGTATTCATTCTTGTATGTTTAGACTAGGACAGGTACGAAAGAAAGAAATGGGTTAAAAACCCAAAAGCA</genome_strand>
        <mrna_strand>GCTGTTTTGCTTTTC-TTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATACGGTTTTTTTTTTTTCTTTTGAAATCGTTGTTCCAGTTTAATTCAAATCCTCAAATGGGTGTACTTTTATTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGGTTATTTTATCACTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCAAATTCCTTGCACCTTCTCGTTGAGCCATAAAGTCTCAAAACACCTTTCTCGAGTCAGTCAACCGCCTTAAAGGATGTACAGGTCGGA-AAAAAAAAACTCAGCAGAAACTGCTTGAAAAAATTGTTGCAGGGATTTGAAGAAGATGTATACAGCAGTATACATATTTTATACACAATTATATGCTGATATACAGGTTGAAGGCGTACAGGCGGATCCAAATTCGAAATCTGGGTTTTTAGCAGTGAACATATGCTGCTAAAAGGGAACTTTCAACTTTCAAAAGTTGAAAAACAGGATGATATACAGCCTGTATACACTGATATACAGAAATGTTATACCTTAAATAGGTGT-AAAAAATATGAATGGCAGCAGGCGTGTAAAAATTCGAACTCCATGAAGATCGAAGGAGCTTGAGGAAGGCGTACTAGAAGATTTTTTATTTATTTATTAAGTTGTATTTACTTTGGGCATAAGCCCTAGGCATTTTTGATTTCCTTGTATTCATTCTTGTATGTTTAAACGGGGACAGGTACGAAAGAAAGAAATGGGTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693221" ref_strand="+" ref_description="SGN-E693221 [LH_Ea10M03]">
      <seq>ccgtatagtcaatgttttggcctttatttcacggtgttgttcctagttaagcagtatggtagtggccttcattttgtttcactttgtttcatgctacttggagttgatgaatcttgtcatttacattcagcctggatgtgagttgttttgtttgtaaccttccaatgagaaaacatattcttgccttccttgaatatactgcttttcgtgaattaatcgaaatgaagactttgcccctatgcaagcagaatgtgggttttgttctcctctgttttatttgcctaatttaagtttgccattgttcagttagacattcagcattttaagggtttaggatagtttagcttgccatgattgccgctgtgtttgtttttggacatgagggttcataagtgcacatccatattgctgttaatgcattgctgttttgcttttctttttatgagattttgtaagctcctcgcttagctcatacggttttttttttttcttttgaaatcgttgttccagtttaattcaaatcctcaaatgggtgtacttttattttttttatttctctgttttgctcaagattcgtttggttattttatcacttcatgtgctaatctattctctttttattgcatgtaaaactattctcgagtcctcatggacctcactcaaattccttgcaccttctcgttgagccataaagtctcaaaacacctttctcgagtcagtcaacccgccttaaaggatgtacaggtcggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24835" stop="23488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24539" g_stop="23789" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E693221" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24539" e_stop="23789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATAGTCAATGTTTTGGCCTTAATTTCACAGTGTTGTTCGTAGTTAAGCAGTATGGTAGTGGCCTTCGTTTTGTTTCACTTTGTTTCATGCTACTTGGAGTTGATGAATCTTGTCATTTACATTCAGCCTGGATGTGAGTTGTTTTGTTTGTAATCTT-CAATGAGAAAACATATTCTTGCCTTCCTTGAATATACTGTTTTTCGTGAATTAATCGAAATGAAGACTTTGCCCCTATGCAAGCAGAATGTGGGTTTTGTTCTCCTCTGTTTTATTTGCGTAATTTAAGTTTGCCATTGTTCATTTAGACATTCAGCATTTTAAGGGTTTAGGATAGTTTAGCTTGCCATGATTGCCGCTGTGTTTATTTTTGGACATGAGGGTTCATAAGTGCACATCCATATTGCTGTTAATGCA-TGCTGTTTTGCTTTTCTTTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATAC-G-AGTTTTTTTTTCTTTTGAAATCGCTGTTCCAATTTAATTCAAATCCTCAAATGGGTGTACTTTTCTTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGATTATTTTATCGCTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCCAATTCCTTGCACCTTCTCGTTGAGCCATAAAGGCTCAAAACACCTTTCTCGAGTCAGCCAA-CCTCCTGAAAGTATGTACAGGTCGGAGAAAA</genome_strand>
        <mrna_strand>CCGTATAGTCAATGTTTTGGCCTTTATTTCACGGTGTTGTTCCTAGTTAAGCAGTATGGTAGTGGCCTTCATTTTGTTTCACTTTGTTTCATGCTACTTGGAGTTGATGAATCTTGTCATTTACATTCAGCCTGGATGTGAGTTGTTTTGTTTGTAACCTTCCAATGAGAAAACATATTCTTGCCTTCCTTGAATATACTGCTTTTCGTGAATTAATCGAAATGAAGACTTTGCCCCTATGCAAGCAGAATGTGGGTTTTGTTCTCCTCTGTTTTATTTGCCTAATTTAAGTTTGCCATTGTTCAGTTAGACATTCAGCATTTTAAGGGTTTAGGATAGTTTAGCTTGCCATGATTGCCGCTGTGTTTGTTTTTGGACATGAGGGTTCATAAGTGCACATCCATATTGCTGTTAATGCATTGCTGTTTTGCTTTTC-TTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATACGGTTTTTTTTTTTTCTTTTGAAATCGTTGTTCCAGTTTAATTCAAATCCTCAAATGGGTGTACTTTTATTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGGTTATTTTATCACTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCAAATTCCTTGCACCTTCTCGTTGAGCCATAAAGTCTCAAAACACCTTTCTCGAGTCAGTCAACCCGCCTTAAAGGATGTACAGGTCGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49454" stop="50788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49754" g_stop="50488" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49754" e_stop="50488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGAAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAAACTTTCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCTTCACAAGCACGATGAACCGTCACAAGCACGACAGACCGTCACAAGCTCCGAAGGTGGTCTCTTCTGCATTTCTTTGCTTAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAATGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAAGTTAAATTCGTTGTTTTTCCTCAAGCAACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTAATCAAATCTAAGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATCAGAACATGATACAGACTCACCACGCACTAACACTTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCT------T-C-CACC-T-------ACG--G-ACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57183" stop="58315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57483" g_stop="58016" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57483" e_stop="58016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGACCATTGTGGTCACGACGGACCGTCGTGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTC-TCTTCATTCCCCTCGACGGCAAGTATGACGGACCGTCATAGACACAACGGTCCGTCGAGGGTCTTCGTTCTAAAACAATTCAACTCTTGAAATCTGGGTACTGGAATCACTTCTCTGAACTTCACGACAAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTTAGACTTCCCCATCTTTCTTCAACAGCTGCACTACGCTGCAACCTACGGACCGTCACAAGCACGACGGACCGTCACAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGAAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGATTTTGTACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAAGTCGCCACCT</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCACTTGGCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733011" ref_strand="+" ref_description="SGN-E733011 [LB03CH12]">
      <seq>cgatcagccgccagcccctctccctctctctctccggcgacccctcttctttttcccccggccagccagcagctgctggccgccttgttcccttctctttccctttatctcattctcgcttctctcttccttcctctttccccctctccctcttcttctctattcctcttcccgttctctccctctctactcgcccttctctccagccggcgaaacaagcaggaaggcgacgacaaccagcagctccggtcaggcgagtacaccggcaacagccaggcgccgccgtctccttctccctctttccctcttcttctcctccgtcttttttcctctcccttttggaggacttccaggcagcagcgaccagtgcacctctagcaatggtgcagtttctccagcagcagcagcgagaacaaaaccaccaggcagcaaagatgcagcaaccagtggacacagcagccgacaatgctgttccgaccggcaaagtcagcagcagctgcaccaaccagcgcagctccgccccaaccttcagcaataacaacaaccgatatataaaaacgaggcattaggataaggacagatctttatagatctgtcccaagtatgaatttttgttctctagtcttaaatccttattgtatgagttatttttcctcaaaatctcatcttcttctccagccttaattcatgtgaaattcttaacgcttattttatcatatgattagtttgttagaattatgtgtcctttccttgctctcctttgtttcttttgaaaatgaagcacccatggtatttctctgtctcggaatatatttgttcatactcaatgtgtaattgactgtatacgactgtgtctaaccatatatggctgggatatattaatttatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61912" stop="60424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61614" g_stop="60724" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="891" r_length="891" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E733011" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61614" e_stop="60724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAGCCGCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCTTTATAGATCTGTCCCAAGTATGAATTTTTGTTCTCTAGTCTTAAATCCTTATTGTATGAGTTATTTTTCCTCAAAATCTCATCTTCTTCTCCAGCCTTAATTCATGTGAAATTCTTAACGCTTATTTTATCATATGATTAGTTTGTTAGAATTATGTGTCCTTTCCTTGCTCTCCTTTGTTTCTTTTGAAAATGAAGCACCCATGGTATTTCTCTGTCTCGGAATATATTTGTTCATACTCAATGTGTAATTGACTGTATACGACTGTGTCTAACCATATATGGCTGGTATATATTAATTTATTTGT</genome_strand>
        <mrna_strand>CGATCAGCCGCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCTTTATAGATCTGTCCCAAGTATGAATTTTTGTTCTCTAGTCTTAAATCCTTATTGTATGAGTTATTTTTCCTCAAAATCTCATCTTCTTCTCCAGCCTTAATTCATGTGAAATTCTTAACGCTTATTTTATCATATGATTAGTTTGTTAGAATTATGTGTCCTTTCCTTGCTCTCCTTTGTTTCTTTTGAAAATGAAGCACCCATGGTATTTCTCTGTCTCGGAATATATTTGTTCATACTCAATGTGTAATTGACTGTATACGACTGTGTCTAACCATATATGGCTGGGATATATTAATTTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724687" ref_strand="+" ref_description="SGN-E724687 [FC24DE06]">
      <seq>gccagcccctctccctctctctctccggcgacccctcttctttttcccccggccagccagcagctgctggccgccttgttcccttctctttccctttatctcattctcgcttctctcttccttcctctttccccctctccctcttcttctctattcctcttcccgttctctccctctctactcgcccttctctccagccggcgaaacaagcaggaaggcgacgacaaccagcagctccggtcaggcgagtacaccggcaacagccaggcgccgccgtctccttctccctctttccctcttcttctcctccgtcttttttcctctcccttttggaggacttccaggcagcagcgaccagtgcacctctagcaatggtgcagtttctccagcagcagcagcgagaacaaaaccaccaggcagcaaagatgcagcaaccagtggacactgcagccgacaatgctgttccgaccggcaaagtcagcaagcagctgcaccaaccagcgcagctccgccccaaccttcagcaataacaacaaccgatatataaaaacgaggcattaggataaggacagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61905" stop="60731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61605" g_stop="61031" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E724687" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61605" e_stop="61031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGC-AGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCT</genome_strand>
        <mrna_strand>GCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACTGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296194" ref_strand="+" ref_description="SGN-E296194 [cLET-24-I7]">
      <seq>tgcttctgcgcctaactgcagaatacaccgttttcggcaggagagcaattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82629" stop="83771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82929" g_stop="83471" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E296194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82929" e_stop="83471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGC</genome_strand>
        <mrna_strand>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246311" ref_strand="+" ref_description="SGN-E246311 [cLEF-40-N11]">
      <seq>gcttctgcgcctaactgcagaatacaccgttttcggcgggagagcgattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82630" stop="83741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82930" g_stop="83441" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E246311" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82930" e_stop="83441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGAT</genome_strand>
        <mrna_strand>GCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCGGGAGAGCGATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369537" ref_strand="+" ref_description="SGN-E369537 [TUS-25-B12]">
      <seq>ctaactgcagaatacaccgttttcggcaggagagcaattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82640" stop="83744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82940" g_stop="83444" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E369537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82940" e_stop="83444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTG</genome_strand>
        <mrna_strand>CTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270456" ref_strand="+" ref_description="SGN-E270456 [cLEM-1-N15]">
      <seq>actgcagaatacaccgctttcggcaggagagcagttccccctacatacaaagtcatcatgcctgcacttgttgtaactgaataaacaatggcctccgagctatccaatatacaaatgaagactacacccaaaactgatattgaaactcctactgatatgaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcataggacgctcaatggagtagaaagaatgagaaaaagagaaaagctttggacttggatggtgagaagagtgatactagctcaaagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagttgaggatcctaatgctttgtctaattttaggatttcaaagcctttataagaggctttgaattgtaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgcactgggcagggtaaaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82643" stop="83776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82943" g_stop="83473" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E270456" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82943" e_stop="83473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG</genome_strand>
        <mrna_strand>ACTGCAGAATACACCGCTTTCGGCAGGAGAGCAGTTCCCCCTACATACAAAGTCATCATGCCTGCACTTGTTGTAACTGAATAAACAATGGCCTCCGAGCTATCCAATATACAAATGAAGACTACACCCAAAACTGATATTGAAACTCCTACTGATATGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCATAGGACGCTCAATGGAGTAGAAAGAATGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACTAGCTCAAAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTTGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTATAAGAGGCTTTGAATTGTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGCACTGGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337119" ref_strand="+" ref_description="SGN-E337119 [cTOE-7-B9]">
      <seq>ctgcagaatacaccgttttcggcaggagagcaattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82644" stop="83666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82944" g_stop="83366" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E337119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82944" e_stop="83366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAG</genome_strand>
        <mrna_strand>CTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247379" ref_strand="+" ref_description="SGN-E247379 [cLEF-46-I10]">
      <seq>aatacaccgttttcggcaggagagcaattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtcaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82650" stop="83627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82950" g_stop="83327" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E247379" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82950" e_stop="83327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTA</genome_strand>
        <mrna_strand>AATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTCAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365675" ref_strand="+" ref_description="SGN-E365675 [cLPT-8-E21]">
      <seq>acactgttttcggggggagagcaattccccctacaagcaaagccatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82653" stop="83741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82953" g_stop="83441" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E365675" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82953" e_stop="83441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGAT</genome_strand>
        <mrna_strand>ACACTGTTTTCGGGGGGAGAGCAATTCCCCCTACAAGCAAAGCCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736489" ref_strand="+" ref_description="SGN-E736489 [LC05DH08]">
      <seq>ggagagcaattccccctacaaacaaagtcatcatgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatgaagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaagtcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaagaaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggcagggtaaaacgctggcctttgttttacccatattggagtccctaacgaatggtcctactaaagcattacgaaaaacagggtatgggaaggctcctagtgttctggtgcttttacctactagggaattggcacttcaggtgtttgctgactttgaagtctatggccgggctgttgggctcacttcatgctgtttgtatggaaattctcctatgggggcacaacaggctcaactaaaaagaggagttgacattgtagtgggtactcctggaagggttaaggaccacattgaaaggggaaatattgatttcggggtctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82668" stop="85580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82968" g_stop="83473" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84788" g_stop="84922" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="641" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85020" g_stop="85160" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="782" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85241" g_stop="85280" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="823" r_length="41" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E736489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82968" e_stop="83473"/>
          <exon e_start="84788" e_stop="84922"/>
          <exon e_start="85020" e_stop="85160"/>
          <exon e_start="85241" e_stop="85280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAGGTAGCTCTTGATTCTATCATGCATATTTATCATTTACTTGCCGTGCTCTAATTATGTAAATATTGGGTGAGTTTGAATGGAGTAACCTGACTTAACACTTTGTTTGGTTAATTATTACAAATTGTTTCATAATGGATTGCATTATATTGTATTGTAATGTATGGATCCATTATACTGGATACACATATATGATGTTCATTAGAGGAAGAGACATAGAGACTCTAACTTGTTTGTAAGGTTCTTTGTTCTCTTGCTGTTAGAGATGCACAGGTTTCCTTTGATGAGAAACTTACTTTTGGATTGTGATAAAGGTTCTTTAATTTCTTTATTGTCATATATACAGATTACCCTTTTGAAGAAAAGTTTATATATAAATTATCAGCTGTCATATATACAAATTACCCTTTTGAAGAAAAAGTTTATATATGAATTATGAGCTGCATGTTTCCTATTATAAATTATTCATTCATCAAGAATTTAAGCTAAATGGGAAGGGTGAAATCAGTGTTACAAAAGGCCTTCGCCGAGAGGCAAGGCGAGACGATGGGTCCTCGCCATTCTCTACTGAGGTGAGGCGAGATCAGTATGGCGAGGTGTGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGCCGCCTTTTTAATTAAAAATATTTGACTTAACAATATTAGTCAAAATTAGGTTTTTTTTTATACTTTTGAAATTTCTGCTTTCTCCATCGCTACTCTCTCTCTCGATTGACTCTCTTCTCGGCTTCTCCATCGCTGTCTCTTCTCCCTCGCTCTCTTCTCCAGTTCTCTTCTCGGCTTCTCCATTGTTGTCGGCTTCTCCATCGCTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTAAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTTGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCCTGCCGTCCACAACACTGGGTGAAATTTAGTCCTCATGTTATGAATGTCAAATGGTAAATTGATTCTCCTATTGCTTTTGCAGCTGCCAGAAATTCCACTAAAAGTGTTCTGACTATTTTGGTTAACTAGATTGTAAATCAAAGATATGACTTGACTTTAATTTGTGCTTCCATATATTTGCAGGGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAGGTATATATTATCAGCCTTCTGTAGGTGTTGTTTCACTCACTGTAAACCAATGGGTGCATTTCTTGTAAGTAGCATCTTGTTAATTTGGTAATTGCAGGTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAGGTAAGGTTTGCTGATATACAAATTGAGTTTCATTCACTTTTATGGAGTGAAAAGTTGACTGCTTCAAAATTCTGCTGCAGGACCACATTGAAAGGGGAAATATTGATTTC-GGGTCTTTGA</genome_strand>
        <mrna_strand>GGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG.................................................................................................GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG................................................................................GACCACATTGAAAGGGGAAATATTGATTTCGGGGTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214963" ref_strand="-" ref_description="SGN-E214963 [cLEC-78-D12]">
      <seq>caaagcaggaacttgaaatggggcaagattggaagtgccagtaacagggctgatttcattcgagtttttttttttttttttttgttaagtcaggttactccattcaaactcacccaatatttacataattagagcacggcaagtaaatgataaatatgcatgatagaatcaagagctacctgcccagtacgagctcgaccaaccaaatcacatccatcaagaatatcatcaaaagtcatagcttgaataggaaaaagtgcttctattcccttagaattcaaagcctcttttaaaggctttgaaatcctaaaattagacaaagcattaggatcctcgactttcttctcaaccatcacttgttcgtcgtcgaatttagcctttttattcttcttcaaatctacgggctcgcatatctctgagctcgtatcactcttctcaccatccaagtccaaagcttttctctttttctctttctttttactccttttagcgtcctctgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105747" stop="82849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84325" g_stop="84307" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.737"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84306" i_stop="84247" i_length="60">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.140" a_score="0.43"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84246" g_stop="84185" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="82" r_length="63" r_score="0.435"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84184" i_stop="83571" i_length="614">
            <donor d_prob="0.000" d_score="0.43"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83570" g_stop="83149" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="504" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E214963" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84325" e_stop="84307"/>
          <exon e_start="84246" e_stop="84185"/>
          <exon e_start="83570" e_stop="83149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAGAAATTTCAAAAGTATAAAAAAAAACCTAATTTTGACTAATATTGTTAAGTCAAATATTTTTAATTAAAAAGGCGGCGCCGTTTCTGTCGCC-GTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCACACCTCGCCATACTGATCTCGCCTCACCTCAGTAGAGAATGGCGAGGACCCATCGTCTCGCCTTGCCTCTCGGCGAAGGCCTTTTGTAACACTGATTTCACCCTTCCCATTTAGCTTAAATTCTTGATGAATGAATAATTTATAATAGGAAACATGCAGCTCATAATTCATATATAAACTTTTTCTTCAAAAGGGTAATTTGTATATATGACAGCTGATAATTTATATATAAACTTTTCTTCAAAAGGGTAATCTGTATATATGACAATAAAGAAATTAAAGAACCTTTATCACAATCCAAAAGTAAGTTTCTCATCAAAGGAAACCTGTGCATCTCTAACAGCAAGAGAACAAAGAACCTTACAAACAAGTTAGAGTCTCTATGTCTCTTCCTCTAATGAACATCATATATGTGTATCCAGTATAATGGATCCATACATTACAATACAATATAATGCAATCCATTATGAAACAATTTGTAATAATTAACCAAACAAAGTGTTAAGTCAGGTTACTCCATTCAAACTCACCCAATATTTACATAATTAGAGCACGGCAAGTAAATGATAAATATGCATGATAGAATCAAGAGCTACCTGCCCAGTACGAGCTCGACCAACCAAATCACATCCATCAAGAATATCATCAAAAGTCATAGCTTGAATAGGAAAAAGTGCTTCTATTCCCTTAGAATTCAAAGCCTCTTTTAAAGGCTTTGAAATCCTAAAATTAGACAAAGCATTAGGATCCTCGACTTTCTTCTCAACCATCACTTGTTCGTCGTCGAATTTAGCCTTTTTATTCTTCTTCAAATCTACGGGCTCGCATATCTCTGAGCTCGTATCACTCTTCTCACCATCCAAGTCCAAAGCTTTTCTCTTTTTCTCTTTCTTTTTACTCCTTTTAGCGTCCTCTGAATCA</genome_strand>
        <mrna_strand>CAAAGCAGGAACTTGAAAT............................................................GGGGCAAGATTGGAAGTGCCAGTAACAGGGCTGATTTCATTCGAGTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAAGTCAGGTTACTCCATTCAAACTCACCCAATATTTACATAATTAGAGCACGGCAAGTAAATGATAAATATGCATGATAGAATCAAGAGCTACCTGCCCAGTACGAGCTCGACCAACCAAATCACATCCATCAAGAATATCATCAAAAGTCATAGCTTGAATAGGAAAAAGTGCTTCTATTCCCTTAGAATTCAAAGCCTCTTTTAAAGGCTTTGAAATCCTAAAATTAGACAAAGCATTAGGATCCTCGACTTTCTTCTCAACCATCACTTGTTCGTCGTCGAATTTAGCCTTTTTATTCTTCTTCAAATCTACGGGCTCGCATATCTCTGAGCTCGTATCACTCTTCTCACCATCCAAGTCCAAAGCTTTTCTCTTTTTCTCTTTCTTTTTACTCCTTTTAGCGTCCTCTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337410" ref_strand="+" ref_description="SGN-E337410 [cTOE-18-K6]">
      <seq>agagatatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggcagggtaaaacgctggcctttgttttacccatattggagtccctaacgaatggtcctactaaagcattacgaaaaacagggtatgggaaggctcctagtgttctggtgcttttacctactagggaattggcacttcaggtgtttgctgactttgaagtctatggccgggctgttgggctcacttcatgctgtttgtatggaaattctcctatgggggcacaacaggctcaactaaaaagaggagttgacattgtagtgggtactcctggaagggttaaggaccacatttgaaaggggaaatattgatttcgggtctttgaagttccgtgttcttgatgaagtcgatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82936" stop="85611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83236" g_stop="83473" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84788" g_stop="84922" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="373" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85020" g_stop="85160" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="514" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85241" g_stop="85311" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="586" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E337410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83236" e_stop="83473"/>
          <exon e_start="84788" e_stop="84922"/>
          <exon e_start="85020" e_stop="85160"/>
          <exon e_start="85241" e_stop="85311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAGGTAGCTCTTGATTCTATCATGCATATTTATCATTTACTTGCCGTGCTCTAATTATGTAAATATTGGGTGAGTTTGAATGGAGTAACCTGACTTAACACTTTGTTTGGTTAATTATTACAAATTGTTTCATAATGGATTGCATTATATTGTATTGTAATGTATGGATCCATTATACTGGATACACATATATGATGTTCATTAGAGGAAGAGACATAGAGACTCTAACTTGTTTGTAAGGTTCTTTGTTCTCTTGCTGTTAGAGATGCACAGGTTTCCTTTGATGAGAAACTTACTTTTGGATTGTGATAAAGGTTCTTTAATTTCTTTATTGTCATATATACAGATTACCCTTTTGAAGAAAAGTTTATATATAAATTATCAGCTGTCATATATACAAATTACCCTTTTGAAGAAAAAGTTTATATATGAATTATGAGCTGCATGTTTCCTATTATAAATTATTCATTCATCAAGAATTTAAGCTAAATGGGAAGGGTGAAATCAGTGTTACAAAAGGCCTTCGCCGAGAGGCAAGGCGAGACGATGGGTCCTCGCCATTCTCTACTGAGGTGAGGCGAGATCAGTATGGCGAGGTGTGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGCCGCCTTTTTAATTAAAAATATTTGACTTAACAATATTAGTCAAAATTAGGTTTTTTTTTATACTTTTGAAATTTCTGCTTTCTCCATCGCTACTCTCTCTCTCGATTGACTCTCTTCTCGGCTTCTCCATCGCTGTCTCTTCTCCCTCGCTCTCTTCTCCAGTTCTCTTCTCGGCTTCTCCATTGTTGTCGGCTTCTCCATCGCTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTAAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTTGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCCTGCCGTCCACAACACTGGGTGAAATTTAGTCCTCATGTTATGAATGTCAAATGGTAAATTGATTCTCCTATTGCTTTTGCAGCTGCCAGAAATTCCACTAAAAGTGTTCTGACTATTTTGGTTAACTAGATTGTAAATCAAAGATATGACTTGACTTTAATTTGTGCTTCCATATATTTGCAGGGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAGGTATATATTATCAGCCTTCTGTAGGTGTTGTTTCACTCACTGTAAACCAATGGGTGCATTTCTTGTAAGTAGCATCTTGTTAATTTGGTAATTGCAGGTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAGGTAAGGTTTGCTGATATACAAATTGAGTTTCATTCACTTTTATGGAGTGAAAAGTTGACTGCTTCAAAATTCTGCTGCAGGACCACA-TTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAAT</genome_strand>
        <mrna_strand>AGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG.................................................................................................GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG................................................................................GACCACATTTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333875" ref_strand="+" ref_description="SGN-E333875 [cTOD-24-A20]">
      <seq>gacgaacaagtgatggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggcagggtaaaacgctgggctttgttttacccatattggagtccctaacgaatggtcctactaaagcattacgaaaaacaaggtatgggaaggctcctagtgttctggtgcttttacctactacggaattggcacttcacgtggttgctgactttgaaatctatgggcgggctgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82988" stop="85224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83288" g_stop="83473" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84788" g_stop="84922" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="321" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85020" g_stop="85057" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="359" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E333875" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83288" e_stop="83473"/>
          <exon e_start="84788" e_stop="84922"/>
          <exon e_start="85020" e_stop="85057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAGGTAGCTCTTGATTCTATCATGCATATTTATCATTTACTTGCCGTGCTCTAATTATGTAAATATTGGGTGAGTTTGAATGGAGTAACCTGACTTAACACTTTGTTTGGTTAATTATTACAAATTGTTTCATAATGGATTGCATTATATTGTATTGTAATGTATGGATCCATTATACTGGATACACATATATGATGTTCATTAGAGGAAGAGACATAGAGACTCTAACTTGTTTGTAAGGTTCTTTGTTCTCTTGCTGTTAGAGATGCACAGGTTTCCTTTGATGAGAAACTTACTTTTGGATTGTGATAAAGGTTCTTTAATTTCTTTATTGTCATATATACAGATTACCCTTTTGAAGAAAAGTTTATATATAAATTATCAGCTGTCATATATACAAATTACCCTTTTGAAGAAAAAGTTTATATATGAATTATGAGCTGCATGTTTCCTATTATAAATTATTCATTCATCAAGAATTTAAGCTAAATGGGAAGGGTGAAATCAGTGTTACAAAAGGCCTTCGCCGAGAGGCAAGGCGAGACGATGGGTCCTCGCCATTCTCTACTGAGGTGAGGCGAGATCAGTATGGCGAGGTGTGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGCCGCCTTTTTAATTAAAAATATTTGACTTAACAATATTAGTCAAAATTAGGTTTTTTTTTATACTTTTGAAATTTCTGCTTTCTCCATCGCTACTCTCTCTCTCGATTGACTCTCTTCTCGGCTTCTCCATCGCTGTCTCTTCTCCCTCGCTCTCTTCTCCAGTTCTCTTCTCGGCTTCTCCATTGTTGTCGGCTTCTCCATCGCTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTAAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTTGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCCTGCCGTCCACAACACTGGGTGAAATTTAGTCCTCATGTTATGAATGTCAAATGGTAAATTGATTCTCCTATTGCTTTTGCAGCTGCCAGAAATTCCACTAAAAGTGTTCTGACTATTTTGGTTAACTAGATTGTAAATCAAAGATATGACTTGACTTTAATTTGTGCTTCCATATATTTGCAGGGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAGGTATATATTATCAGCCTTCTGTAGGTGTTGTTTCACTCACTGTAAACCAATGGGTGCATTTCTTGTAAGTAGCATCTTGTTAATTTGGTAATTGCAGGTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGG</genome_strand>
        <mrna_strand>GACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAACGCTGGGCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAAGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTACGGAATTGGCACTTCAC.................................................................................................GTGGTTGCTGACTTTGAAATCTATGGGCGGGCTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700405" ref_strand="+" ref_description="SGN-E700405 [FA13AB05]">
      <seq>agtcgaggatcctaatgctttgtctaattttaggatttcaaagcctttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgacttttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggcagggtaaaacgctggcctttgttttacccatattggagtccctaacgaatggtcctactaaagcattacgaaaaacagggtatgggaaggctcctagtgttctggtgcttttacctactagggaattggcacttcaggtgtttgctgactttgaagtctatggccgggctgttgggctcacttcatgctgtttgtatggaaattctcctatgggggcacaacaggctcaactaaaaagaggagttgacattgtagtgggtactcctggaagggttaaggaccacattgaaaggggaaatattgatttcgggtctttgaagttccgtgttcttgatgaagtcgatgaaatgttaaaaattggttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83014" stop="85629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83314" g_stop="83473" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84788" g_stop="84922" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="295" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85020" g_stop="85160" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="436" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85241" g_stop="85329" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="525" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E700405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83314" e_stop="83473"/>
          <exon e_start="84788" e_stop="84922"/>
          <exon e_start="85020" e_stop="85160"/>
          <exon e_start="85241" e_stop="85329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAGGTAGCTCTTGATTCTATCATGCATATTTATCATTTACTTGCCGTGCTCTAATTATGTAAATATTGGGTGAGTTTGAATGGAGTAACCTGACTTAACACTTTGTTTGGTTAATTATTACAAATTGTTTCATAATGGATTGCATTATATTGTATTGTAATGTATGGATCCATTATACTGGATACACATATATGATGTTCATTAGAGGAAGAGACATAGAGACTCTAACTTGTTTGTAAGGTTCTTTGTTCTCTTGCTGTTAGAGATGCACAGGTTTCCTTTGATGAGAAACTTACTTTTGGATTGTGATAAAGGTTCTTTAATTTCTTTATTGTCATATATACAGATTACCCTTTTGAAGAAAAGTTTATATATAAATTATCAGCTGTCATATATACAAATTACCCTTTTGAAGAAAAAGTTTATATATGAATTATGAGCTGCATGTTTCCTATTATAAATTATTCATTCATCAAGAATTTAAGCTAAATGGGAAGGGTGAAATCAGTGTTACAAAAGGCCTTCGCCGAGAGGCAAGGCGAGACGATGGGTCCTCGCCATTCTCTACTGAGGTGAGGCGAGATCAGTATGGCGAGGTGTGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGACAGAAACGGCGCCGCCTTTTTAATTAAAAATATTTGACTTAACAATATTAGTCAAAATTAGGTTTTTTTTTATACTTTTGAAATTTCTGCTTTCTCCATCGCTACTCTCTCTCTCGATTGACTCTCTTCTCGGCTTCTCCATCGCTGTCTCTTCTCCCTCGCTCTCTTCTCCAGTTCTCTTCTCGGCTTCTCCATTGTTGTCGGCTTCTCCATCGCTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTAAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTTGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTCCTGCCGTCCACAACACTGGGTGAAATTTAGTCCTCATGTTATGAATGTCAAATGGTAAATTGATTCTCCTATTGCTTTTGCAGCTGCCAGAAATTCCACTAAAAGTGTTCTGACTATTTTGGTTAACTAGATTGTAAATCAAAGATATGACTTGACTTTAATTTGTGCTTCCATATATTTGCAGGGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAGGTATATATTATCAGCCTTCTGTAGGTGTTGTTTCACTCACTGTAAACCAATGGGTGCATTTCTTGTAAGTAGCATCTTGTTAATTTGGTAATTGCAGGTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAGGTAAGGTTTGCTGATATACAAATTGAGTTTCATTCACTTTTATGGAGTGAAAAGTTGACTGCTTCAAAATTCTGCTGCAGGACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGT</genome_strand>
        <mrna_strand>AGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG.................................................................................................GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG................................................................................GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336665" ref_strand="+" ref_description="SGN-E336665 [cTOE-4-F16]">
      <seq>gcacttcaagtgtttgctgactttgaagtctatggccgggctgttgggctcacttcatgctgtttgtatggaaattctcctatgggggcacaacaggctcaactaaaaagaggagttgacattgtagtgggtactcctggaagggttaaggaccacattgaaaggggaaatattgatttcnggtctttgaagttccgtgttcttgatgaagtcgatgaaatgttaaaaattggttttgtagatgatgtcgaatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84710" stop="85649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84914" g_stop="84922" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85020" g_stop="85160" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="150" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85241" g_stop="85349" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="259" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E336665" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84914" e_stop="84922"/>
          <exon e_start="85020" e_stop="85160"/>
          <exon e_start="85241" e_stop="85349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTCAGGTATATATTATCAGCCTTCTGTAGGTGTTGTTTCACTCACTGTAAACCAATGGGTGCATTTCTTGTAAGTAGCATCTTGTTAATTTGGTAATTGCAGGTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAGGTAAGGTTTGCTGATATACAAATTGAGTTTCATTCACTTTTATGGAGTGAAAAGTTGACTGCTTCAAAATTCTGCTGCAGGACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTT</genome_strand>
        <mrna_strand>GCACTTCAA.................................................................................................GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG................................................................................GACCACATTGAAAGGGGAAATATTGATTTCNGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344791" ref_strand="+" ref_description="SGN-E344791 [cTOF-21-H20]">
      <seq>ttcttgatgaagtcgatgaaatgttaaaaattggttttgtagatgatgtcgaatttattttaggcaaggtcgaagatgcaagcctagttcaaacagttcttttcagtgccactttgccagtctgggtgaagcatattgcttctaagtttctgaaaccagataagaaaacggctgaccttgttggtaatgagaaaatgaaggccagtaaaaatgtgaggcatattattattccatgctctagttctgcaagacctcagcttattcctgatatcattcggtgctacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagctagctggcttactgcctggggcaagtgctttgcatggggagatacaacagaaccagcgtgaggctacacttaaaggattcagatcaggcaaattcatgacattagtggccacaaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaaaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84990" stop="87228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85290" g_stop="85352" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85353" i_stop="85556" i_length="204">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85557" g_stop="85627" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="134" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85851" g_stop="86005" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="289" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86098" g_stop="86209" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="401" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86438" g_stop="86539" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="503" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86630" g_stop="86690" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="564" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86778" g_stop="86928" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="714" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E344791" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85290" e_stop="85352"/>
          <exon e_start="85557" e_stop="85627"/>
          <exon e_start="85851" e_stop="86005"/>
          <exon e_start="86098" e_stop="86209"/>
          <exon e_start="86438" e_stop="86539"/>
          <exon e_start="86630" e_stop="86690"/>
          <exon e_start="86778" e_stop="86928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAGGTATGCTATGAGTCAGAAATCTCTTCCTATAGAAGTTGTGGTTTTTACCCCTCCATATCTATACTATGGTGTTACAGATGTTAGGACGAAATTCTGACAACTGATATTTGCCAGTGCATTACTGTTCTGTTGAGGGATTTTCTATTTTATGGTTATTGACACTTTAATGCTTTTCTGTTTCTTTTATTCCTTTGTGATTCAAAGGCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCATGTACGTAGTTGTACCTTTTGTTTTTGAATTCACAATACAGTATCCTGTACTGGGGAATATTTCATGCAATTTTTTATTTAATATCAGTTCAATTGTTCTCTACCTAAGGCTTGATAAACAAATTACCTTGAGGTTGGAAATTAGAGGGCAGGTGCCGTGTGCAACTGCTGTGCTCTTAGCTTGCACTTCTTTCTCTCTTACTGAAACATGTTTTTGGTGCCAGATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAGGTTGGTTGCTTCTCATTTTCCAGTGTCTTCCATTTAAAGCATGACGTGAACCTCTGAAATGACTATAATCTTTTTGTTCCATGGAAAATTAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAGGTAGAATTTTCTGAAATACATGCTCTATTTTACTGTGCTCTCCTCATCATCCATCATCTTCTTTTCGGGTTCCACCCCTTCCGTATCTTCCTTACAGTGTTGATTATACAAATATGCAGTATTTGTCATCAACCTTCTACACTCATTAACAAATTGATAATTATGTGTAGCTAAGTCGAGTCTCGTAGAAACAACTAACAACCCTTTATCATTTTCACATGTTCTCAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAAT</genome_strand>
        <mrna_strand>TTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG............................................................................................................................................................................................................GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT...............................................................................................................................................................................................................................ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG............................................................................................TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG....................................................................................................................................................................................................................................GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAA-AATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341253" ref_strand="+" ref_description="SGN-E341253 [cTOE-22-K24]">
      <seq>ttgatgaagtcgatgaaatgttaaaaattggttttgtagatgatgtggaatttattttaggcaaggtcgaagatgcaagcctagttcaaacagttcttttcagtgccactttgccagtctgggtgaagcatattgcttctaagtttctgaaaccagataagaaaacggctgaccttgttggtaatgagaaaatgaaggccagtaaaaatgtgaggcatattattattccatgctctagttctgcaagacctcagcttattcctgatatcattcggtgctacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagctagctggcttactgcctggggcaagtgctttgcatggggagatacaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84993" stop="86497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85293" g_stop="85352" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85353" i_stop="85556" i_length="204">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85557" g_stop="85627" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85851" g_stop="86005" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="286" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86098" g_stop="86197" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="386" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E341253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85293" e_stop="85352"/>
          <exon e_start="85557" e_stop="85627"/>
          <exon e_start="85851" e_stop="86005"/>
          <exon e_start="86098" e_stop="86197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAGGTATGCTATGAGTCAGAAATCTCTTCCTATAGAAGTTGTGGTTTTTACCCCTCCATATCTATACTATGGTGTTACAGATGTTAGGACGAAATTCTGACAACTGATATTTGCCAGTGCATTACTGTTCTGTTGAGGGATTTTCTATTTTATGGTTATTGACACTTTAATGCTTTTCTGTTTCTTTTATTCCTTTGTGATTCAAAGGCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCATGTACGTAGTTGTACCTTTTGTTTTTGAATTCACAATACAGTATCCTGTACTGGGGAATATTTCATGCAATTTTTTATTTAATATCAGTTCAATTGTTCTCTACCTAAGGCTTGATAAACAAATTACCTTGAGGTTGGAAATTAGAGGGCAGGTGCCGTGTGCAACTGCTGTGCTCTTAGCTTGCACTTCTTTCTCTCTTACTGAAACATGTTTTTGGTGCCAGATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAGGTTGGTTGCTTCTCATTTTCCAGTGTCTTCCATTTAAAGCATGACGTGAACCTCTGAAATGACTATAATCTTTTTGTTCCATGGAAAATTAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAG</genome_strand>
        <mrna_strand>TTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTGGAATTTATTTTAG............................................................................................................................................................................................................GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT...............................................................................................................................................................................................................................ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG............................................................................................TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285205" ref_strand="+" ref_description="SGN-E285205 [cLER-20-L3]">
      <seq>gaagatgcaagcctagttcaaacagttcttttcagtgccactttgccagtctgggtgaagcatattgcttctaagtttctgaaaccagataagaaaacggctgaccttgttggtaatgagaaaatgaaggccagtaaaaatgtgaggcatattattattccatgctctagttctgcaagacctcagcttattcctgatatcattcggtgctacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagctagctggcttactgcctggggcaagtgctttgcatggggagatacaacagaaccagcgtgaggctacacttaaaggattcagatcaggcaaattcatgacattagtggccacaaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggactggctggaaagagtggcgttgctgtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85265" stop="87101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85565" g_stop="85627" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85851" g_stop="86005" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="218" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86098" g_stop="86209" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="330" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86438" g_stop="86539" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="432" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86630" g_stop="86690" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="493" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86778" g_stop="86801" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="517" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E285205" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85565" e_stop="85627"/>
          <exon e_start="85851" e_stop="86005"/>
          <exon e_start="86098" e_stop="86209"/>
          <exon e_start="86438" e_stop="86539"/>
          <exon e_start="86630" e_stop="86690"/>
          <exon e_start="86778" e_stop="86801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCATGTACGTAGTTGTACCTTTTGTTTTTGAATTCACAATACAGTATCCTGTACTGGGGAATATTTCATGCAATTTTTTATTTAATATCAGTTCAATTGTTCTCTACCTAAGGCTTGATAAACAAATTACCTTGAGGTTGGAAATTAGAGGGCAGGTGCCGTGTGCAACTGCTGTGCTCTTAGCTTGCACTTCTTTCTCTCTTACTGAAACATGTTTTTGGTGCCAGATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAGGTTGGTTGCTTCTCATTTTCCAGTGTCTTCCATTTAAAGCATGACGTGAACCTCTGAAATGACTATAATCTTTTTGTTCCATGGAAAATTAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAGGTAGAATTTTCTGAAATACATGCTCTATTTTACTGTGCTCTCCTCATCATCCATCATCTTCTTTTCGGGTTCCACCCCTTCCGTATCTTCCTTACAGTGTTGATTATACAAATATGCAGTATTTGTCATCAACCTTCTACACTCATTAACAAATTGATAATTATGTGTAGCTAAGTCGAGTCTCGTAGAAACAACTAACAACCCTTTATCATTTTCACATGTTCTCAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGC</genome_strand>
        <mrna_strand>GAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT...............................................................................................................................................................................................................................ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG............................................................................................TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG....................................................................................................................................................................................................................................GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACTGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289078" ref_strand="+" ref_description="SGN-E289078 [cLES-18-C8]">
      <seq>aatgtgaggcatattattattccatgctctagttctgcaagacctcagcttattcctgatatcattcggtgctacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagctagctggcttactggctggggcaagtgctttgcatggggagatacaacaaaaccagcgtgaggctacacttaaaggattcagatcaggcaaattcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85626" stop="86775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85926" g_stop="86005" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86098" g_stop="86209" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="192" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228">
            <donor d_prob="0.883" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86438" g_stop="86475" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="230" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E289078" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85926" e_stop="86005"/>
          <exon e_start="86098" e_stop="86209"/>
          <exon e_start="86438" e_stop="86475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAGGTTGGTTGCTTCTCATTTTCCAGTGTCTTCCATTTAAAGCATGACGTGAACCTCTGAAATGACTATAATCTTTTTGTTCCATGGAAAATTAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAGGTAGAATTTTCTGAAATACATGCTCTATTTTACTGTGCTCTCCTCATCATCCATCATCTTCTTTTCGGGTTCCACCCCTTCCGTATCTTCCTTACAGTGTTGATTATACAAATATGCAGTATTTGTCATCAACCTTCTACACTCATTAACAAATTGATAATTATGTGTAGCTAAGTCGAGTCTCGTAGAAACAACTAACAACCCTTTATCATTTTCACATGTTCTCAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGAC</genome_strand>
        <mrna_strand>AATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG............................................................................................TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGGCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAAAACCAGCGTGAG....................................................................................................................................................................................................................................GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699678" ref_strand="+" ref_description="SGN-E699678 [FA10DE12]">
      <seq>ccgcttattcctgatatcattcggtgctacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagctagctggcttactgcctggggcaagtgctttgcatggggagatacaacagaaccagcgtgaggctacacttaaaggattcagatcaggcaaattcatgacattagtggccacaaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85671" stop="88765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85971" g_stop="86005" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86098" g_stop="86209" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="147" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86438" g_stop="86539" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="249" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86630" g_stop="86690" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="310" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86778" g_stop="86946" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="479" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="576" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="671" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="805" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88445" g_stop="88465" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="826" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E699678" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85971" e_stop="86005"/>
          <exon e_start="86098" e_stop="86209"/>
          <exon e_start="86438" e_stop="86539"/>
          <exon e_start="86630" e_stop="86690"/>
          <exon e_start="86778" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTATTCCTGATATCATTCGGTGCTACGGCAGGTTGGTTGCTTCTCATTTTCCAGTGTCTTCCATTTAAAGCATGACGTGAACCTCTGAAATGACTATAATCTTTTTGTTCCATGGAAAATTAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAGGTAGAATTTTCTGAAATACATGCTCTATTTTACTGTGCTCTCCTCATCATCCATCATCTTCTTTTCGGGTTCCACCCCTTCCGTATCTTCCTTACAGTGTTGATTATACAAATATGCAGTATTTGTCATCAACCTTCTACACTCATTAACAAATTGATAATTATGTGTAGCTAAGTCGAGTCTCGTAGAAACAACTAACAACCCTTTATCATTTTCACATGTTCTCAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGG</genome_strand>
        <mrna_strand>CCGCTTATTCCTGATATCATTCGGTGCTACGGCAG............................................................................................TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG....................................................................................................................................................................................................................................GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699528" ref_strand="+" ref_description="SGN-E699528 [FA10BF07]">
      <seq>atacaacagaaccagcgtgaggctacacttaaaggattcagatcaggcaaattcatgacattagtggccacaaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctccagtgtgggagacccatcttctcaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85889" stop="87594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86189" g_stop="86209" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228">
            <donor d_prob="0.883" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86438" g_stop="86539" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="123" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86630" g_stop="86690" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="184" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86778" g_stop="86946" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="353" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="450" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="545" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E699528" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86189" e_stop="86209"/>
          <exon e_start="86438" e_stop="86539"/>
          <exon e_start="86630" e_stop="86690"/>
          <exon e_start="86778" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAACAGAACCAGCGTGAGGTAGAATTTTCTGAAATACATGCTCTATTTTACTGTGCTCTCCTCATCATCCATCATCTTCTTTTCGGGTTCCACCCCTTCCGTATCTTCCTTACAGTGTTGATTATACAAATATGCAGTATTTGTCATCAACCTTCTACACTCATTAACAAATTGATAATTATGTGTAGCTAAGTCGAGTCTCGTAGAAACAACTAACAACCCTTTATCATTTTCACATGTTCTCAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC</genome_strand>
        <mrna_strand>ATACAACAGAACCAGCGTGAG....................................................................................................................................................................................................................................GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCCAGTGTGGGAGACCCATCTTCTCACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708791" ref_strand="+" ref_description="SGN-E708791 [FA36DB04]">
      <seq>cactaatgtggcagcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacatactttttttgatagctgacaatacaagagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86185" stop="88984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86485" g_stop="86539" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86630" g_stop="86690" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="116" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86778" g_stop="86946" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="285" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="382" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="477" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="611" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88445" g_stop="88479" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="646" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88480" i_stop="88529" i_length="50">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88530" g_stop="88684" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="808" r_length="162" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E708791" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86485" e_stop="86539"/>
          <exon e_start="86630" e_stop="86690"/>
          <exon e_start="86778" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88479"/>
          <exon e_start="88530" e_stop="88684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAG-------ATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTG</genome_strand>
        <mrna_strand>CACTAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTT..................................................GTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATACTTTTTTTGATAGCTGACAATACAAGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707619" ref_strand="+" ref_description="SGN-E707619 [FA33CA11]">
      <seq>ctgtatatcgatgatgttcagttaattatccagtgcgaagccactagtgacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaagctgcgttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86208" stop="89003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86507" g_stop="86539" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86630" g_stop="86690" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="94" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86778" g_stop="86946" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="263" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="360" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="455" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="589" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88445" g_stop="88703" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="848" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E707619" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86507" e_stop="86539"/>
          <exon e_start="86630" e_stop="86690"/>
          <exon e_start="86778" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATATCGATGATGTTCAGTTAATTATCCAGGTTTTGTTACAACGTTCATGTTCCATGCTTGATTCTTAAACTTTATTGGTATTTGAGTGCTGATTGTGATTAATATTTCTGTGCGTAAAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAA</genome_strand>
        <mrna_strand>CTGTATATCGATGATGTTCAGTTAATTATCCAG..........................................................................................TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAAGCTGCGTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707560" ref_strand="+" ref_description="SGN-E707560 [FA33BD11]">
      <seq>cgttacgtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgctgtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctgtatgtttctgttgtcttatttattctctctgggaggcaaacctccttatcttactgttgactatcttgtgtcttgctttccagggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86343" stop="88929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86642" g_stop="86690" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87">
            <donor d_prob="0.913" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86946" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="218" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87019" g_stop="87294" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="494" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="628" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88445" g_stop="88629" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="813" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E707560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86642" e_stop="86690"/>
          <exon e_start="86778" e_stop="86946"/>
          <exon e_start="87019" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTGGTGAGTTTCTAATGTTGGGATTGCTTTCATTGGCTTACATAAATTAGGGAGCATTGTTAGTAACTTTATTTTTCCGTCACATTCCAGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGC</genome_strand>
        <mrna_strand>CGTTACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG.......................................................................................GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702477" ref_strand="+" ref_description="SGN-E702477 [FA18DD01]">
      <seq>gctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttacctttcttgtagtggtcttccatgttttactatatgtttgggtagacacttgaaaaagtattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86500" stop="89188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86800" g_stop="86946" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="244" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="339" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="473" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88445" g_stop="88888" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="917" r_length="444" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E702477" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86800" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTA</genome_strand>
        <mrna_strand>GCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTACCTTTCTTGTAGTGGTCTTCCATGTTTTACTATATGTTTGGGTAGACACTTGAAAAAGTATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710354" ref_strand="+" ref_description="SGN-E710354 [FA55AG01]">
      <seq>acgatgtcaaacatttctagaatcgaaaaagaatctggtgtgacctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86513" stop="89085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86813" g_stop="86946" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="231" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="326" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88445" g_stop="88785" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="801" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E710354" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86813" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCT</genome_strand>
        <mrna_strand>ACGATGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707054" ref_strand="+" ref_description="SGN-E707054 [FA31DG03]">
      <seq>gtctgctcctcagccagctgatgttgccaaggcagctgggaaagaagctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatgtttggttagacacttgaaaagttattatttattttgtatggnattggtacctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86569" stop="89221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86869" g_stop="86946" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87019" g_stop="87115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="175" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="270" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="404" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88445" g_stop="88926" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="886" r_length="482" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E707054" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86869" e_stop="86946"/>
          <exon e_start="87019" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAGGTATGGTTTCATTTGTGCCTGGTTAATTTTGAAATGTATCATTTTATTAATTTTCATTTCAACTATGTATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAA</genome_strand>
        <mrna_strand>GTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCTGATAG........................................................................TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATGTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGNATTGGTACCTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711226" ref_strand="+" ref_description="SGN-E711226 [FB01BE05]">
      <seq>catacctgtatttaaggctgctgcagaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgccaaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgtgttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtcctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttactatatgtttggttagacacttgaaaagttattatttattttgtatggtatcgttacctgaagaaatcatattcaattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86722" stop="89232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87022" g_stop="87115" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87200" g_stop="87294" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="189" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88098" g_stop="88231" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="323" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88445" g_stop="88932" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="809" r_length="486" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E711226" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87022" e_stop="87115"/>
          <exon e_start="87200" e_stop="87294"/>
          <exon e_start="88098" e_stop="88231"/>
          <exon e_start="88445" e_stop="88932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCGTGAGTATTTAAAATTTGAAATATGATGTTTATCGAATTGCAAGTATGAATTGTGGCTAGTGCATTTCAATGGCTCAAATTGTGTGTGTTTGGTATTGAAGGAAAATGTTTGCTTGGAGAATGTTTTTCACGAAAATAAGGGTTTCTTACTAATTTTTATGTTTGGTACCTAAGCAGCAAGTATTATCCTAAAAACTTCTGACATAATCTAGACAAATATTATTGGGGTCTGTGGGGTGGTGCACATGGGGCTACAGGCATGTCACTTGGGAAACTTGTTTTTCCTACTTCCACTAGGGAAAGTCATTTTCCACATTTTTAAGAAACTTGTTTTCCTGGACAAATGTTTCCCAAAATTTTCGACCAACTGAACTTGGAAAAATTGGAAAATGTTTTCTTCCATGTTGAACTTCATCTAAGCATATCCACAAGAAAACTCTAAACACATCTTCTGAATTCGCAAGCAAGGATGTAGGCAGGGAACCATGTTCGTAGTCTCAGATCAGTGTTTCTACCCATTTATATAAAATTAGCTACAAAATGAAGTTGGTACAATAATTACACTAAATGGATTCATGAAGGGTAAGTTTCTCATTGTTCCCTATTGGAAGTAGTGAATTACATTACAGGTTTCCAGCATCTTGCATCAGAGATCCGTTATGCTAAGTAGTGCTTTTAATTTACATCAAACTGACCTTAATTTATTTTGAGACATGATGAAGCTGATTGTCTAGGAGTCTTATAAACTGTTGTCGTGCTCAGTCCAATAATTCTGATTTTGTTACCTGTTATGTCAATGGCAGCTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAG</genome_strand>
        <mrna_strand>CATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT....................................................................................GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATG--TTACTATATGTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATCGTTACCTGAAGAAATCATATTCAATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351759" ref_strand="+" ref_description="SGN-E351759 [cTOS-8-F4]">
      <seq>ttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagctgatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagcaaaggttcttctggattaattttactaaattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87823" stop="89073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88123" g_stop="88231" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88445" g_stop="88773" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="438" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E351759" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88123" e_stop="88231"/>
          <exon e_start="88445" e_stop="88773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATA</genome_strand>
        <mrna_strand>TTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGCAAAGGTTCTTCTGGATTAATTTTACTAAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279323" ref_strand="-" ref_description="SGN-E279323 [cLEL-4-P19](-)">
      <seq>gcacgagggcagtttttgatgttgctgctgagcacttggatgaatttctctgaggccaaaaaactgcacatggggtccatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87878" stop="88985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88178" g_stop="88231" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88445" g_stop="88685" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="295" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E279323" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88178" e_stop="88231"/>
          <exon e_start="88445" e_stop="88685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGT</genome_strand>
        <mrna_strand>GCACGAGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTGAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTCCATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351648" ref_strand="+" ref_description="SGN-E351648 [cTOS-8-G3]">
      <seq>gaatttctctcaggccaaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagagagagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatttttggttagacacttgaaaagntattatttattttgtatgggattgttacctgaagaaatcatattcaattcaagttcaatttactataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88135" stop="105747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88219" g_stop="88231" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88445" g_stop="88947" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="516" r_length="503" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88948" i_stop="89374" i_length="427">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89375" g_stop="89389" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="531" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E351648" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88219" e_stop="88231"/>
          <exon e_start="88445" e_stop="88947"/>
          <exon e_start="89375" e_stop="89389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCTCTCAGGTATAGTGCTCCATATTTCTGCAGATGATTCAATGAATATGTCACATTATAATCACTCAACAGTAGTGGTATAATTTGTCATTAGAGTTTGTTCACTTCATTTTTTTTCATGTTTCTGTTTAGGCAGGGTAGATCTGCCTAGTTGCTATATTTGATTGTTGTAGCTTTTCTAATGTCTGCTTCTCCCTTTGTCTTTTCCTGTGGGATTTTCAGGCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAACTTCAATTTATATGGAACGTTTGATTCTACACCAGTTTAATTTTCTTGCTTTAGACCTAACTTAGCTCCTTTACTCCCATGTTTCTTGCATCCGCTACTTGATTTGCCTCGCGATAATAATAGTACAATTGATTCTTTGGGCAATATTGATGATTTTATTCTAGTGGGATTTATGTAGTCTTATGGTCTTTAAGCATGTACAACTAAATATTGAAATTAAACTGTCGCTAAAAAAAAAAAAGGGGAGGGAGTTGGAGGTGAGGGATCATTCTTCTTAAAACAAACTAAAAAGGAAGTGGGTACACTCAATTACGAATTCAAAAATTTCATTAAAGGGCGCTAATGGGATTAGTAAAAATAAATAAAT</genome_strand>
        <mrna_strand>GAATTTCTCTCAG.....................................................................................................................................................................................................................GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGNTATTATTTATTTTGTATGGGATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291920" ref_strand="+" ref_description="SGN-E291920 [cLET-7-E19]">
      <seq>tggcggcggcttcggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggcttttgnncngggnnctcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatttttggttagacacttgaaaagttattatttattttgtatggtattgttacctgaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88248" stop="89216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88548" g_stop="88918" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E291920" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88548" e_stop="88918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGC---TG--C---G-T-TCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATC</genome_strand>
        <mrna_strand>TGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTTTTGNNCNGGGNNCTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226400" ref_strand="+" ref_description="SGN-E226400 [cLEL-26-G16](-)">
      <seq>cttcggtaacaaaagaggcgaaggtggcttttctggaggaagaggggggaaaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88257" stop="89128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88557" g_stop="88828" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E226400" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88557" e_stop="88828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCT</genome_strand>
        <mrna_strand>CTTCGGTAACAAAAGAGGCGAAGGTGGCTTTTCTGGAGGAAGAGGGGGGAAAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217264" ref_strand="+" ref_description="SGN-E217264 [cLEL-21-O3](-)">
      <seq>cggtaacagaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatttttggttagacacttgaaaagttattatttattttgtatggtattgttacctgaagaaatcatattcaattcaagttcaatttactaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88260" stop="105753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88560" g_stop="88969" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E217264" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88560" e_stop="88969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</genome_strand>
        <mrna_strand>CGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226374" ref_strand="+" ref_description="SGN-E226374 [cLEL-26-A10](-)">
      <seq>ggtggcttttctggaggaagaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagtgagctttcttgtagtgttctcccatgttttactatatcttttggttagacacttgaaaagttattatttattttgtatggtattgttacctgaagaaatcatattcaattcaagttcaatttactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88279" stop="89246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88579" g_stop="88943" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E226374" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88579" e_stop="88943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATAT-TTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACT</genome_strand>
        <mrna_strand>GGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTGAGCTTTCTTGTAGTGTTCTCCCATGTTTTACTATATCTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226447" ref_strand="+" ref_description="SGN-E226447 [cLEL-26-A10](-)">
      <seq>gaggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctggcaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatttttggttagacacttgaaaagttattatttattttgtatggtattgttacctgaagaaatcatattaaatacaagttcaatttactaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88298" stop="89246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88598" g_stop="88950" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E226447" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88598" e_stop="88950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTT</genome_strand>
        <mrna_strand>GAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGGCAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTAAATACAAGTTCAATTTACTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217550" ref_strand="+" ref_description="SGN-E217550 [cLEL-21-O3](-)">
      <seq>ggggggagaggtaatggcaactttggtcgcagatggtaaggaatggcgacataatttttttgatagctgacaatacaagagtttgtccaaggctgcgttcaaaattttggtatagtgaagaaaatgtatgggacttcagtaaggtttcttctgtattaattttactaatttatataggtttctcctccctgtaccctgcttcattatgcttttcgctagttagctttcttgtagtgttcttccatgttttactatatttttggttagacacttgaaaagttattatttattttgtatggtattgttacctgaagaaatcatattcaattcaagttcaattttctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88300" stop="105753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88600" g_stop="88969" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E217550" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88600" e_stop="88969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</genome_strand>
        <mrna_strand>GGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317478" ref_strand="+" ref_description="SGN-E317478 [cTOA-28-N12]">
      <seq>agatgcaaatgaaatctgcagtaagagcatatagttcttctattaaaaaagaatttctttgtgatcaatccaaaagtaaaagttggaaatttatttgcaagcgtcatgagttatggtgtgattggatgattcggtttagagagatctcaagcgatatgtggaagacagaaaaaatgattgaaccgcatacttgtcttacagataattataaggaggatcatttcaatttgattgataacatgattgccacttcattaataccatatgttatgcaaaattcggacataaatattaagatgatccgtgaaattatcaaaggaaagcatcactatactcctagttatagaaaattacaaaaaggtcgaagaaaagcatttcgaatggtttatggtgattttgaaagttcatttaaagcattacctcgatacatggctgcactacaattattcaatccaggcactattattgagtgggagcatcattctacaacaatgcaagatgagcaaatttttaaatttctttttagggcttttaaacagagcattgatggtttcaaaagttgtaggctggtcatttctatcgacggcacacatctttatggtttgtataatatcaaattgttaattgcggttggaattgacgcggatggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90659" stop="91911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90959" g_stop="91611" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E317478" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90959" e_stop="91611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAAATGAAATCTGCAGTAAGAGCATATAGTCTTGCTATTAAAAAAGAATTTCTTTGTGATCAATCCAAAAGTAAAAGTTGGAAAGTTATTTGCAAGCGTCATGAGTTAGGGTGTGATTGGATGATTCGGTTTAGAGAGATTTCAAGCGGTATATGGAAGACAGGAAAAATGATTGAACCGCATACTTGTCTTACAGATAACTATAAGGAGGATCATTTCAATTTGAATGATAACATGATTGCCACTTCATTAATACCATATGTTATGCAAAATTCGGACATAAATATTAAGATGATCCGTGAAATTATCAAAGGAAAGCATCACTATACTCCTAGTTACAGAAAAGCACAAAAAGGTCGAAGAAAAGTATTTCGAATGGTTTATGGTGATTTTGAAAGTTCATTTAAGGCATTACCTCGATACATGGCTGCACTACAATTATTCAATCCAAGCACTATTATTGAGTGGGAGCATCATTCTACAACAATGCAAGGTGAGCAAATTTTTAAATTTCTTTTTTGGGCTTTTAAACAGAGCATTGATGGTTTCAAAAGTTGTAGGCCGGTCATTTCTATCGACGGCACACATCTTTATGGTTTGTATGATATCAAATTGTTAATTGCGGTTGGAATTGATGCGAATGGAAAT</genome_strand>
        <mrna_strand>AGATGCAAATGAAATCTGCAGTAAGAGCATATAGTTCTTCTATTAAAAAAGAATTTCTTTGTGATCAATCCAAAAGTAAAAGTTGGAAATTTATTTGCAAGCGTCATGAGTTATGGTGTGATTGGATGATTCGGTTTAGAGAGATCTCAAGCGATATGTGGAAGACAGAAAAAATGATTGAACCGCATACTTGTCTTACAGATAATTATAAGGAGGATCATTTCAATTTGATTGATAACATGATTGCCACTTCATTAATACCATATGTTATGCAAAATTCGGACATAAATATTAAGATGATCCGTGAAATTATCAAAGGAAAGCATCACTATACTCCTAGTTATAGAAAATTACAAAAAGGTCGAAGAAAAGCATTTCGAATGGTTTATGGTGATTTTGAAAGTTCATTTAAAGCATTACCTCGATACATGGCTGCACTACAATTATTCAATCCAGGCACTATTATTGAGTGGGAGCATCATTCTACAACAATGCAAGATGAGCAAATTTTTAAATTTCTTTTTAGGGCTTTTAAACAGAGCATTGATGGTTTCAAAAGTTGTAGGCTGGTCATTTCTATCGACGGCACACATCTTTATGGTTTGTATAATATCAAATTGTTAATTGCGGTTGGAATTGACGCGGATGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538683" ref_strand="+" ref_description="SGN-E538683 [TUS-58-A22](-)">
      <seq>ttcaaggaacgcgattgagctttgatcatgattacatccctcccactcaatacgatgaaccaccaccagtacaagtatctcgccgatcacgacaaacaacaccgagagagggtgctcgtcgaggtagaaggaccactagtgaaacagctgatttttctgcagggccctctaacactaatgtggcgactcccgagccttattatcccacatttgatttttctgtagggccctctaacactaatccaaatttttctagtcagcaaacagttggttttgtaactccgcaggttccaatatctgggtttgcacaatttagtggttctcaatatggttttcaacatggtatgcgtgaatttccgatacataattctccatttggtggaagattgaatttttcgaatgtaactgcgtttgatgattcaagatttaatgttggggcttcacaaaatttagttcttaatagacaaaatccacctcggagaacatctaggctacacaaatcaactagatgtggaacaggcagtcactatcaaaatgaggaagattttgaaaatgaagatgaaaatgaagatgagaatgaagatgtagaagattcggattcagaagaataattttttttatgcacctttattctaaaaggctaaagattcgaattttgaaatatgtaaattttgttgtttcgtgcaagtttgaacaaagtaatgagattatgttgaacaagttgaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94362" stop="35739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94062" g_stop="93662" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93661" i_stop="93562" i_length="100">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93561" g_stop="93238" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="724" r_length="323" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93237" i_stop="92714" i_length="524">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92713" g_stop="92660" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="778" r_length="54" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E538683" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94062" e_stop="93662"/>
          <exon e_start="93561" e_stop="93238"/>
          <exon e_start="92713" e_stop="92660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAATGTAAGTATAATTATTTTCATATAATTTTTTTAACTTTTTATATTTTTTTTTATTTTTATTGCATGTTTATTTGATTATATTATGTTATATTGTATTATAGGTAACTGCGTTTGATGATTCAAGATTTAATGCTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACAATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCTGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTGAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATGTTTGAACAAGTTTGCAGGATTTACTTTTCTTTTTGTAATAGGTCAAATCAATACTTTTTATGTTATGTCAAATCAATACTTTTTATATTAGGTCAAATCATTATTTTTTAATAGAGTTCAAATCAGTAATATAATAATAATGTAAAGATATTATACGTACAATATTTAAAATGCACAAGACAAATTAAATTCATGTTAACAAATATATATAAAAGATATATCATATGTCAAATCAATACTTTTTATTAACATTTTTGTATGTTTGAACAAGTTTGCAGGATTTACTTTTTTTTTATCTCAAATCAATACTTTTTGTCAACATTTTTGTATGTTTGAACAAGTTTGCAGGATTTACTTTTTTTTTATCATTAGTCAAATCAATACTTTTTATGTTAGGTCAAATCAATACTTTTTATATTAGATAAAATCATTATTTTTTACGTACAATATTTAAAATGCACAAGACAAATTAAATTCATGTCAACAAATAAATATAAAAGATATATCATAATATTAATAACAAGATAATAAAAACACATTAACCTTAAAAACATATACAAAATATTTAAAATCGAGTAGGACATCGTGCCT</genome_strand>
        <mrna_strand>TTCAAGGAACGCGATTGAGCTTTGATCATGATTACATCCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGACCACTAGTGAAACAGCTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCAAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT....................................................................................................GTAACTGCGTTTGATGATTCAAGATTTAATGTTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACTATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCGGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTAAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATG-TTGAACAAGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAACTCGAGGGGGGCCCGGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538686" ref_strand="+" ref_description="SGN-E538686 [TUS-58-A22]">
      <seq>cagtatcgtcgagctcggatgattgaaaatgatgaaaatcaatctaatgaaatgagacaatatgcagcggaagtcgctcgtatttcaatggagtcaatgaatgcagcctttcaaggaacgcgattgagctttgatcatgattacaatcctcccactcaatacgatgaaccaccaccagtacaagtatctcgccgatcacgacaaacaacaccgagagagggtgctcgtcgaggtagaaggaccactagtgaaacagctgatttttctgcagggccctctaacactaatgtggcgactcccgagccttattatcccacatttgatttttctgtagggccctctaacactaatccaaatttttctagtcagcaaacagttggttttgtaactccgcaggttccaatatctgggtttgcacaatttagtggttctcaatatggttttcaacatggtatgcgtgaatttccgatacataattctccatttggtggaagattgaatttttcgaatgtaactgcgtttgatgattcaagatttaatgttggggcttcacaaaatttagttcttaatagacaaaatccacctcggagaacatctaggctacacaaatcaactagatgtggaacaggcagtcactatcaaaatgaggaagattttgaaaatgaagatgaaaatgaagatgagaatgaagatgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94471" stop="93074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94171" g_stop="93662" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93661" i_stop="93562" i_length="100">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93561" g_stop="93374" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="698" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E538686" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94171" e_stop="93662"/>
          <exon e_start="93561" e_stop="93374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAATGTAAGTATAATTATTTTCATATAATTTTTTTAACTTTTTATATTTTTTTTTATTTTTATTGCATGTTTATTTGATTATATTATGTTATATTGTATTATAGGTAACTGCGTTTGATGATTCAAGATTTAATGCTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACAATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGA</genome_strand>
        <mrna_strand>CAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCAGCCTTTCAAGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGACCACTAGTGAAACAGCTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCAAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT....................................................................................................GTAACTGCGTTTGATGATTCAAGATTTAATGTTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACTATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275102" ref_strand="+" ref_description="SGN-E275102 [cLEN-9-E16]">
      <seq>agtatcgtcgagctcggatgattgaaaatgatgaaaatcaatctaatgaaatgagacaatatgcagcggaagtcgctcgtatttcaatggagtcaatgaatgcagcctttcaaggaacgcgattgagctttgatcatgattacaatcctcccactcaatacgatgaaccaccaccagtacaagtatctcgccgatcacgacaaacaacaccgagagagggtgctcgtcgaggtagaaggaccactagtgaaacagctgatttttctgcagggccctctaacactaatgtggcgactcccgagccttattatcccacatttgatttttctgtagggccctctaacactaatccaaatttttctagtcagcaaacagttggttttgtaactccgcaggttccaatatctgggtttgcacaatttagtggttctcaatatggttntcaacatggtatgcgtgaatttccgatacataattctccatttggtggaagattgaatttttcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94470" stop="93362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94170" g_stop="93662" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E275102" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94170" e_stop="93662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT</genome_strand>
        <mrna_strand>AGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCAGCCTTTCAAGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGACCACTAGTGAAACAGCTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCAAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTNTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273853" ref_strand="+" ref_description="SGN-E273853 [cLEN-7-O9]">
      <seq>ttgatcgtgttgtgagacagttcgattatttacaacggagtcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaggatatagatgcatttaactgtgcacaagatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgcatggtcattggaaatccacaacatgttgtacaaaaagggtatcaacacatggcaggaagacatgaggcattagctaggggtcatgaaatgcagtatcgtggagctcggatgattgaaaatgatgaaaatcaatctgatggaatgagacaatatgcagcggaagtcgctcgtatttcaatggagggaatgaaggcaggctcttaaggaacgcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94872" stop="93762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94572" g_stop="94271" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94270" i_stop="94190" i_length="81">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94189" g_stop="94046" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="446" r_length="144" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E273853" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94572" e_stop="94271"/>
          <exon e_start="94189" e_stop="94046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTAGTATGTATATTACATAAATTTCAAATTATTATGTCAATCTTTAATAAATTTTTTTTATTAATATTTGTTTATTCATTATAGGCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTG</genome_strand>
        <mrna_strand>TTGATCGTGTTGTGAGACAGTTCGATTATTTACAACGGAGTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAGGATATAGATGCATTTAACTGTGCACAAGATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA.................................................................................GCTAGGGGTCATGAAATGCAGTATCGTGGAGCTCGGATGATTGAAAATGATGAAAATCAATCTGATGGAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGGGAATGAAGGCAGGCTCTTAAGGAACGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274114" ref_strand="+" ref_description="SGN-E274114 [cLEN-8-I9]">
      <seq>tttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaagatatagatgcatttaactatacacaatatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgcatggtcattggaaatccacaacatgttgtacaaaaagggtatcaacacatggcaggaagacatgaggcattagctaggggtcatgaaatgcagtatcgtcgagctcggatgattgaaaatgatgaaaatcaatctaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95110" stop="93820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94810" g_stop="94271" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94270" i_stop="94190" i_length="81">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94189" g_stop="94120" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="610" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E274114" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94810" e_stop="94271"/>
          <exon e_start="94189" e_stop="94120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTAGTATGTATATTACATAAATTTCAAATTATTATGTCAATCTTTAATAAATTTTTTTTATTAATATTTGTTTATTCATTATAGGCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAA</genome_strand>
        <mrna_strand>TTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA.................................................................................GCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275375" ref_strand="+" ref_description="SGN-E275375 [cLEN-10-E10]">
      <seq>gacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaagatatagatgcatttaactatacacaatatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgcatggtcattggaaatccacaacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95193" stop="94017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94893" g_stop="94317" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E275375" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94893" e_stop="94317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGT</genome_strand>
        <mrna_strand>GACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276989" ref_strand="+" ref_description="SGN-E276989 [cLEN-22-B14]">
      <seq>attattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaagatatagatgcatttaactatacacaatatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95275" stop="94042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94975" g_stop="94342" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E276989" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94975" e_stop="94342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCA</genome_strand>
        <mrna_strand>ATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276969" ref_strand="+" ref_description="SGN-E276969 [cLEN-22-H23]">
      <seq>cgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95444" stop="94174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95144" g_stop="95091" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95090" i_stop="94994" i_length="97">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94993" g_stop="94474" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="574" r_length="520" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E276969" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95144" e_stop="95091"/>
          <exon e_start="94993" e_stop="94474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAA</genome_strand>
        <mrna_strand>CGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAG.................................................................................................ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393845" ref_strand="+" ref_description="SGN-E393845 [TUS-41-D13]">
      <seq>aattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagcttttttttgaagatgttattaatggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95276" stop="94355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94976" g_stop="94655" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E393845" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94976" e_stop="94655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTG</genome_strand>
        <mrna_strand>AATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCTTTTTTTTGAAGATGTTATTAATGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276288" ref_strand="+" ref_description="SGN-E276288 [cLEN-21-K4]">
      <seq>ttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattatggttatgtggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtaggtatacatattttttgattaaatattttttatatactagtaatatgcacttttaaatttaagtgcattataagtaatggtgaatttatttattgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttgtttctgccaatgttgtttttataattatcttacttaattattttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95654" stop="94400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95354" g_stop="94700" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E276288" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95354" e_stop="94700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTA</genome_strand>
        <mrna_strand>TTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTGTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276340" ref_strand="+" ref_description="SGN-E276340 [cLEN-21-J12]">
      <seq>agttattaactataactcaactgagtttgaagttcaacaaagatttagattatatggattatggttatgcggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtaggtatacatattttttgattaaatattttttatatactagtaatatgcacttttaaatttaagtgcattataagtaatggtgaatttatttattgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95649" stop="94446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95349" g_stop="94746" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E276340" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95349" e_stop="94746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTT</genome_strand>
        <mrna_strand>AGTTATTAACTATAACTCAACTGAGTTTGAAGTTCAACAAAGATTTAGATTATATGGATTATGGTTATGCGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276550" ref_strand="+" ref_description="SGN-E276550 [cLEN-17-K14]">
      <seq>ttaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattatggttatgtggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtagatttgggcatgggaaagaattattcccctgcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95644" stop="94658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95344" g_stop="95091" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95090" i_stop="94994" i_length="97">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94993" g_stop="94958" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="290" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E276550" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95344" e_stop="95091"/>
          <exon e_start="94993" e_stop="94958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCA</genome_strand>
        <mrna_strand>TTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAG.................................................................................................ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273357" ref_strand="+" ref_description="SGN-E273357 [cLEN-3-L15]">
      <seq>aatttttgttattcttcaaattttctaaagtttttaaaagcattttctttataagatatggatccatcaaatttatacgtacatcctggtccagtagagcatgatgtattaaaaattcaagttcatcatcgttccgaaggaatttggaatggtagcataaaagaagagaaatgttgcttatatacgcgtcgtggtgatattgaattttggcaacatttaaaatatcatccattacattctcgcatccttcaatattttgaaaattgtagatttaaaggaattcttgatgttggatgtgtgccgtatgactccggattaatttctgctttaattgaaaggtggcgtccggaaactcatacttttcacatgcgaactgacgaggctaccataactttacaagatattgaaattttattcggaatggtagtagatggtagtcctataattttaaatggagctgattctttaaggattataggtagacaagaaatgatttttcaattaacaggatggttacccgatactagttgtttttctggtgttagtagattgtcaacatataaattgattgagtatatcgaaggtttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="-" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96368" stop="94988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96068" g_stop="96014" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96013" i_stop="95885" i_length="129">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95884" g_stop="95288" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="652" r_length="597" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="-" ref_id="SGN-E273357" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96068" e_stop="96014"/>
          <exon e_start="95884" e_stop="95288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTCAAAGCATTTTCTTTATAAGGTGAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAATCGTTTGATACTTATATTAATGTTAATTTTTATTTTTATTTTTTGTGTATAGATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTTATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAGATGTTGCTTATATACGAGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGGCGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</genome_strand>
        <mrna_strand>AATTTTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAG.................................................................................................................................ATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAAATGTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGACGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550584" ref_strand="+" ref_description="SGN-E550584 [TUS-11-D22]">
      <seq>ttaaggacccctctttcaagatttcccagatcatacagtctaacaaacatatcttttttttttgtcaactaagtagtaattaatcagttcttgtatttaaggtcaaaactgattaattattggtattaatggataatttccattcaatatttcctttacaaccggatgatgatgcgaattatgattcccatcaacaacagctcatttttccacatgaaacctataccaacccttgtaatttcatataccaacaagatctggtaaatgattttgcttcttttgattcattggagttaagagacaacaatcttacatttaacaacaatactaacaacaatcagaaagggaaatcatgtggcgttgaggataagaagaaacacaagaaagtgatgcatagagaaattgaaaggcaaagaagacaagaaatgtctactctttatgcttctcttcgtcaacaacttcctcttgaaaatattaaggggaagcgttccacatcagatcacatacttgaggcagcgaattacatagaacaactacaaaagaatgttaagaatttggaagaaaagagagaaaagttgatgaaagattcaactggtttaagcaatgttgatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109012" stop="110379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109312" g_stop="109791" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109792" i_stop="109943" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109944" g_stop="110079" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="615" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E550584" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109312" e_stop="109791"/>
          <exon e_start="109944" e_stop="110079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAGGTTTGAAAAATTCATCATCCCTTTTCTTTCTCTTTCCATTTTCCCAAACTTTAATTATCTCAGATCATCCCATTTACCACTTATATATCAGTGTATTTTAACATGTTGTAACAAGTAATTTGACGCGTTCCTAAATGTTTGAAATCTTTAAGGGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCA</genome_strand>
        <mrna_strand>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATC-TTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAG........................................................................................................................................................GGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688221" ref_strand="+" ref_description="SGN-E688221 [t3_tus_11_d22]">
      <seq>ttaaggacccctctttcaagatttcccagatcatacagtctaacaaacatatcttttttttttgtcaactaagtagtaattaatcagttcttgtatttaaggtcaaaactgattaattattggtattaatggataatttccattcaatatttcctttacaaccggatgatgatgcgaattatgattcccatcaacaacagctcatttttccacatgaaacctataccaacccttgtaatttcatataccaacaagatctggtaaatgattttgcttcttttgattcattggagttaagagacaacaatcttacatttaacaacaatactaacaacaatcagaaagggaaatcatgtggcgttgaggataagaagaaacacaagaaagtgatgcatagagaaattgaaaggcaaagaagacaagaaatgtctactctttatgcttctcttcgtcaacaacttcctcttgaaaatattaaggggaagcgttccacatcagatcacatacttgaggcagcgaattacatagaacaactacaaaagaatgttaagaatttggaagaaaagagagaaaagttgatgaaagattcaactggtttaagcaatgttgatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109012" stop="110379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109312" g_stop="109791" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109792" i_stop="109943" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109944" g_stop="110079" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="615" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E688221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109312" e_stop="109791"/>
          <exon e_start="109944" e_stop="110079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAGGTTTGAAAAATTCATCATCCCTTTTCTTTCTCTTTCCATTTTCCCAAACTTTAATTATCTCAGATCATCCCATTTACCACTTATATATCAGTGTATTTTAACATGTTGTAACAAGTAATTTGACGCGTTCCTAAATGTTTGAAATCTTTAAGGGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCA</genome_strand>
        <mrna_strand>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATC-TTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAG........................................................................................................................................................GGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310190" ref_strand="+" ref_description="SGN-E310190 [cLEZ-8-B4]">
      <seq>gaggttcaagatttcccagatcataccagtctaacaaacatatcttttttttttgtcaactaagtagtaattaatcagttcttgtatttaaggtcaaaactgattaattattggtattaatggataatttccattcaatatttcctttacaaccggatgatgatgcgaattatgattcccatcaacaacagctcatttttccacatgaaacctataccaacccttgtaatttcatataccaacaagatctggtaaatgattttgcttcttttgattcattggagttaagagacaacaatcttacatttaacaacaatactaacaacaatcagaaagggaaatcatgtggcgttgaggataagaagaaacacaagaaagtgatgcatagagaaattgaaaggcaaagaagacaagaaatgtctactctttatgcttctcttcgtcaacaacttcctcttgaaaatattaaagggaagcgttccacatcagatcacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109026" stop="110272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109322" g_stop="109791" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109792" i_stop="109943" i_length="152">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.650" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109944" g_stop="109972" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="499" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E310190" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109322" e_stop="109791"/>
          <exon e_start="109944" e_stop="109972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAAGATTTCCCAGATCATA-CAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAGGTTTGAAAAATTCATCATCCCTTTTCTTTCTCTTTCCATTTTCCCAAACTTTAATTATCTCAGATCATCCCATTTACCACTTATATATCAGTGTATTTTAACATGTTGTAACAAGTAATTTGACGCGTTCCTAAATGTTTGAAATCTTTAAGGGGAAGCGTTCCACATCAGATCACATACT</genome_strand>
        <mrna_strand>GAGGTTCAAGATTTCCCAGATCATACCAGTCTAACAAACATATC-TTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAA........................................................................................................................................................GGGAAGCGTTCCACATCAGATCACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549167" ref_strand="+" ref_description="SGN-E549167 [TUS-67-O18]">
      <seq>ttcaagatttcccagatcatacagtctaacaaacatatcttttttttttgtcaactaagtagtaattaatcagttcttgtatttaaggtcaaaactgattaattattggtattaatggataatttccattcaatatttcctttacaaccggatgatgatgcgaattatgattcccatcaacaacagctcatttttccacatgaaacctataccaacccttgtaatttcatataccaacaagatctggtaaatgattttgcttcttttgattcattggagttaagagacaacaatcttacatttaacaacaatactaacaacaatcagaaagggaaatcatgtggcgttgaggataagaagaaacacaagaaagtgatgcatagagaaattgaaaggcaaagaagacaagaaatgtctactctttatgcttctcttcgtcaacaacttcctcttgaaaatattaaggggaagcgttccacatcagatcacatacttgaggcagcgaattacatagaacaactacaaaagaatgttaagaatttggaagaaaagagagaaaagttgatgaaagattcaactggtttaagcaatgttgatggcattaacaaaagtggaagatcaacatctagacactgctccccacctgctattgtgacagtgaaagaatgcttggatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0003K02-Fitmc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0003K02.2" temp_strand="+" temp_description="C06HBa0003K02.2  AC211020.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0003K02 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109026" stop="110457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109326" g_stop="109791" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109792" i_stop="109943" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109944" g_stop="110157" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="679" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0003K02.2" gen_strand="+" ref_id="SGN-E549167" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0003K02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109326" e_stop="109791"/>
          <exon e_start="109944" e_stop="110157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGATTTCCCAGATCATACAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAGGTTTGAAAAATTCATCATCCCTTTTCTTTCTCTTTCCATTTTCCCAAACTTTAATTATCTCAGATCATCCCATTTACCACTTATATATCAGTGTATTTTAACATGTTGTAACAAGTAATTTGACGCGTTCCTAAATGTTTGAAATCTTTAAGGGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCATTAACAAAAGTGGAAGATCAACATCTAGACACTGCTCCCCACCTGCTATTGTGACAGTGAAAGAATGCTTGGATGGGA</genome_strand>
        <mrna_strand>TTCAAGATTTCCCAGATCATACAGTCTAACAAACATATC-TTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAG........................................................................................................................................................GGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCATTAACAAAAGTGGAAGATCAACATCTAGACACTGCTCCCCACCTGCTATTGTGACAGTGAAAGAATGCTTGGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>61</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5662" PGL_stop="5058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5662" e_stop="5436"/>
            <exon e_start="5260" e_stop="5058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.815" e_score="0.912"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="5662" e_stop="5436" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.815">
            <gDNA_intron_boundary i_start="5435" i_stop="5261" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="5260" e_stop="5058" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5662" stop="5436"/>
              <exon start="5260" stop="5058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268096" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGTCCAGACCATTATCCAAAACATATATATACAACCCACATAATGTCCACAGACCTCTAAGAGTACATTAGTGAAACTCGACGGGACAGGGCCCCGCCATACCCATAGACGAGCAAAAGACTACACAAAAGTTATGTACCAAAACAACTGGGCTCCGGAACAGTGGAGCTCTCCCAATCAGCAGAGTAGATATCCTAGGCGGGAGGATCACCGAACTGCGCGTCT : GTGCCCAGCTTCCCTAGTAAGGGGCTCGGCAAAATAATCATCACGTCATCTCCGTCATCATCATCATCATAACCATCCTCATCACCAATCATATATATAATATACATACCCGGCCCTCTAGTGAGGAACTCGGTGACATATGCAAGAAACTCCGCACGAACATTACCCGGCCCGGGACTCGGTGAAATGATAAATGACTCTAT</gDNA_template>
            <first_frame> H  V  Q  T  I  I  Q  N  I  Y  I  Q  P  T  *  C  P  Q  T  S  K  S  T  L  V  K  L  D  G  T  G  P  R  H  T  H  R  R  A  K  D  Y  T  K  V  M  Y  Q  N  N  W  A  P  E  Q  W  S  S  P  N  Q  Q  S  R  Y  P  R  R  E  D  H  R  T  A  R  L :   C  P  A  S  L  V  R  G  S  A  K  *  S  S  R  H  L  R  H  H  H  H  H  N  H  P  H  H  Q  S  Y  I  *  Y  T  Y  P  A  L  *  *  G  T  R  *  H  M  Q  E  T  P  H  E  H  Y  P  A  R  D  S  V  K  *  *  M  T  L  </first_frame>
            <second_frame>  M  S  R  P  L  S  K  T  Y  I  Y  N  P  H  N  V  H  R  P  L  R  V  H  *  *  N  S  T  G  Q  G  P  A  I  P  I  D  E  Q  K  T  T  Q  K  L  C  T  K  T  T  G  L  R  N  S  G  A  L  P  I  S  R  V  D  I  L  G  G  R  I  T  E  L  R  V   : C  A  Q  L  P  *  *  G  A  R  Q  N  N  H  H  V  I  S  V  I  I  I  I  I  T  I  L  I  T  N  H  I  Y  N  I  H  T  R  P  S  S  E  E  L  G  D  I  C  K  K  L  R  T  N  I  T  R  P  G  T  R  *  N  D  K  *  L  Y </second_frame>
            <third_frame>   C  P  D  H  Y  P  K  H  I  Y  T  T  H  I  M  S  T  D  L  *  E  Y  I  S  E  T  R  R  D  R  A  P  P  Y  P  *  T  S  K  R  L  H  K  S  Y  V  P  K  Q  L  G  S  G  T  V  E  L  S  Q  S  A  E  *  I  S  *  A  G  G  S  P  N  C  A  S  :  V  P  S  F  P  S  K  G  L  G  K  I  I  I  T  S  S  P  S  S  S  S  S  *  P  S  S  S  P  I  I  Y  I  I  Y  I  P  G  P  L  V  R  N  S  V  T  Y  A  R  N  S  A  R  T  L  P  G  P  G  L  G  E  M  I  N  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5617" stop="5436"/>
                    <exon start="5260" stop="5224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPQTSKSTLVKLDGTGPRHTHRRAKDYTKVMYQNNWAPEQWSSPNQQSRYPRREDHRTARLCPASLVRGSAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11309" PGL_stop="10878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11309" e_stop="10878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="11309" e_stop="10878" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11309" stop="10878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAAGTACTCTGACTGGAATTCAGAGTAGTACCATGTACCTCATCACACTTTTCCACTTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAAGTCATTTTTCAATTGTTGTTCTGCGTCAGCTTCACTTCCTTCAATTTTCTGTGATTTGAACAGTTTGATCACATCATCTTCATCATTTGATCCAGTATTTTTCAAGCTTCCATCTTCATCAAATACAACATTAGTGGTTTTTTCAATGCATTGAGTTCTTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAACACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATTATCCTTTCCATTGTTTAGCACAAAACACCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAGCTCA</gDNA_template>
            <first_frame> F  K  V  L  *  L  E  F  R  V  V  P  C  T  S  S  H  F  S  T  S  S  A  S  S  G  R  L  *  F  *  S  S  K  S  F  F  N  C  C  S  A  S  A  S  L  P  S  I  F  C  D  L  N  S  L  I  T  S  S  S  S  F  D  P  V  F  F  K  L  P  S  S  S  N  T  T  L  V  V  F  S  M  H  *  V  L  L  L  N  I  L  *  A  L  L  D  E  E  Y  P  T  N  T  P  S  S  L  L  G  S  N  F  P  R  L  S  F  P  L  F  S  T  K  H  L  H  P  N  A  L  R  *  L  R  I  G  F  L  L  L  S  S  S </first_frame>
            <second_frame>  L  K  Y  S  D  W  N  S  E  *  Y  H  V  P  H  H  T  F  P  L  H  Q  P  L  Q  V  D  Y  D  F  D  H  Q  S  H  F  S  I  V  V  L  R  Q  L  H  F  L  Q  F  S  V  I  *  T  V  *  S  H  H  L  H  H  L  I  Q  Y  F  S  S  F  H  L  H  Q  I  Q  H  *  W  F  F  Q  C  I  E  F  F  C  *  I  F  C  K  P  Y  S  M  K  N  I  Q  Q  T  L  L  H  H  S  *  D  Q  I  F  P  D  Y  P  F  H  C  L  A  Q  N  T  C  I  Q  M  L  *  D  S  S  A  *  A  F  C  C  *  A  A   </second_frame>
            <third_frame>   *  S  T  L  T  G  I  Q  S  S  T  M  Y  L  I  T  L  F  H  F  I  S  L  F  R  *  T  M  I  L  I  I  K  V  I  F  Q  L  L  F  C  V  S  F  T  S  F  N  F  L  *  F  E  Q  F  D  H  I  I  F  I  I  *  S  S  I  F  Q  A  S  I  F  I  K  Y  N  I  S  G  F  F  N  A  L  S  S  F  V  E  Y  S  V  S  L  T  R  *  R  I  S  N  K  H  S  F  I  T  P  R  I  K  F  S  Q  I  I  L  S  I  V  *  H  K  T  P  A  S  K  C  S  K  I  A  P  H  R  L  S  V  V  E  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0003K02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24539" PGL_stop="23315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24539" e_stop="23315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="24539" e_stop="23315" e_length="1225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24539" stop="23789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24120" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATAGTCAATGTTTTGGCCTTAATTTCACAGTGTTGTTCGTAGTTAAGCAGTATGGTAGTGGCCTTCGTTTTGTTTCACTTTGTTTCATGCTACTTGGAGTTGATGAATCTTGTCATTTACATTCAGCCTGGATGTGAGTTGTTTTGTTTGTAATCTTCAATGAGAAAACATATTCTTGCCTTCCTTGAATATACTGTTTTTCGTGAATTAATCGAAATGAAGACTTTGCCCCTATGCAAGCAGAATGTGGGTTTTGTTCTCCTCTGTTTTATTTGCGTAATTTAAGTTTGCCATTGTTCATTTAGACATTCAGCATTTTAAGGGTTTAGGATAGTTTAGCTTGCCATGATTGCCGCTGTGTTTATTTTTGGACATGAGGGTTCATAAGTGCACATCCATATTGCTGTTAATGCATGCTGTTTTGCTTTTCTTTTTTATGAGATTTTGTAAGCTCCTCGCTTAGCTCATACGAGTTTTTTTTTCTTTTGAAATCGCTGTTCCAATTTAATTCAAATCCTCAAATGGGTGTACTTTTCTTTTTTTTATTTCTCTGTTTTGCTCAAGATTCGTTTGATTATTTTATCGCTTCATGTGCTAATCTATTCTCTTTTTATTGCATGTAAAACTATTCTCGAGTCCTCATGGACCTCACTCCAATTCCTTGCACCTTCTCGTTGAGCCATAAAGGCTCAAAACACCTTTCTCGAGTCAGCCAACCTCCTGAAAGTATGTACAGGTCGGAGAAAAAAAAACCCAGCAGAAACTGCTTGAAAAAATTGTTGCAGAGATTTGAAGAAGATGTATACAGCAGTATACATATTTTATACATTGTATACACTGATATACAGGTTGAAGGCGTACAAGCAGATCCAAATTCGAAATCTGGGATTGTAGCAGTGAACATATGCTTTTAAAAGGGAACTTTCAACTTTTGAAAGTTGAAAAACAAGCTGATATACAGCCTGTATACACTGATATACAGAAACATTATACCTTAAATAGGTGTAAAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTCCATGAAGATCGAAGGAGCTTGAGGAAGGCGTACTAGAAGATTTTTATTTATTTATTAAGTTGTATTTACTTTGGGCATAAGCCCTTGTCATTTTTGCTTTCCTTGTATTCATTCTTGTATGTTTAGACTAGGACAGGTACGAAAGAAAGAAATGGGTTAAAAACCCAAAAGCA</gDNA_template>
            <first_frame> F  H  S  Q  C  F  G  L  N  F  T  V  L  F  V  V  K  Q  Y  G  S  G  L  R  F  V  S  L  C  F  M  L  L  G  V  D  E  S  C  H  L  H  S  A  W  M  *  V  V  L  F  V  I  F  N  E  K  T  Y  S  C  L  P  *  I  Y  C  F  S  *  I  N  R  N  E  D  F  A  P  M  Q  A  E  C  G  F  C  S  P  L  F  Y  L  R  N  L  S  L  P  L  F  I  *  T  F  S  I  L  R  V  *  D  S  L  A  C  H  D  C  R  C  V  Y  F  W  T  *  G  F  I  S  A  H  P  Y  C  C  *  C  M  L  F  C  F  S  F  L  *  D  F  V  S  S  S  L  S  S  Y  E  F  F  F  L  L  K  S  L  F  Q  F  N  S  N  P  Q  M  G  V  L  F  F  F  L  F  L  C  F  A  Q  D  S  F  D  Y  F  I  A  S  C  A  N  L  F  S  F  Y  C  M  *  N  Y  S  R  V  L  M  D  L  T  P  I  P  C  T  F  S  L  S  H  K  G  S  K  H  L  S  R  V  S  Q  P  P  E  S  M  Y  R  S  E  K  K  K  P  S  R  N  C  L  K  K  L  L  Q  R  F  E  E  D  V  Y  S  S  I  H  I  L  Y  I  V  Y  T  D  I  Q  V  E  G  V  Q  A  D  P  N  S  K  S  G  I  V  A  V  N  I  C  F  *  K  G  T  F  N  F  *  K  L  K  N  K  L  I  Y  S  L  Y  T  L  I  Y  R  N  I  I  P  *  I  G  V  K  K  Y  E  W  Q  Q  A  C  E  N  S  N  S  M  K  I  E  G  A  *  G  R  R  T  R  R  F  L  F  I  Y  *  V  V  F  T  L  G  I  S  P  C  H  F  C  F  P  C  I  H  S  C  M  F  R  L  G  Q  V  R  K  K  E  M  G  *  K  P  K  S  </first_frame>
            <second_frame>  F  I  V  N  V  L  A  L  I  S  Q  C  C  S  *  L  S  S  M  V  V  A  F  V  L  F  H  F  V  S  C  Y  L  E  L  M  N  L  V  I  Y  I  Q  P  G  C  E  L  F  C  L  *  S  S  M  R  K  H  I  L  A  F  L  E  Y  T  V  F  R  E  L  I  E  M  K  T  L  P  L  C  K  Q  N  V  G  F  V  L  L  C  F  I  C  V  I  *  V  C  H  C  S  F  R  H  S  A  F  *  G  F  R  I  V  *  L  A  M  I  A  A  V  F  I  F  G  H  E  G  S  *  V  H  I  H  I  A  V  N  A  C  C  F  A  F  L  F  Y  E  I  L  *  A  P  R  L  A  H  T  S  F  F  F  F  *  N  R  C  S  N  L  I  Q  I  L  K  W  V  Y  F  S  F  F  Y  F  S  V  L  L  K  I  R  L  I  I  L  S  L  H  V  L  I  Y  S  L  F  I  A  C  K  T  I  L  E  S  S  W  T  S  L  Q  F  L  A  P  S  R  *  A  I  K  A  Q  N  T  F  L  E  S  A  N  L  L  K  V  C  T  G  R  R  K  K  N  P  A  E  T  A  *  K  N  C  C  R  D  L  K  K  M  Y  T  A  V  Y  I  F  Y  T  L  Y  T  L  I  Y  R  L  K  A  Y  K  Q  I  Q  I  R  N  L  G  L  *  Q  *  T  Y  A  F  K  R  E  L  S  T  F  E  S  *  K  T  S  *  Y  T  A  C  I  H  *  Y  T  E  T  L  Y  L  K  *  V  *  K  N  M  N  G  S  R  R  A  K  I  R  T  P  *  R  S  K  E  L  E  E  G  V  L  E  D  F  Y  L  F  I  K  L  Y  L  L  W  A  *  A  L  V  I  F  A  F  L  V  F  I  L  V  C  L  D  *  D  R  Y  E  R  K  K  W  V  K  N  P  K  A </second_frame>
            <third_frame>   S  *  S  M  F  W  P  *  F  H  S  V  V  R  S  *  A  V  W  *  W  P  S  F  C  F  T  L  F  H  A  T  W  S  *  *  I  L  S  F  T  F  S  L  D  V  S  C  F  V  C  N  L  Q  *  E  N  I  F  L  P  S  L  N  I  L  F  F  V  N  *  S  K  *  R  L  C  P  Y  A  S  R  M  W  V  L  F  S  S  V  L  F  A  *  F  K  F  A  I  V  H  L  D  I  Q  H  F  K  G  L  G  *  F  S  L  P  *  L  P  L  C  L  F  L  D  M  R  V  H  K  C  T  S  I  L  L  L  M  H  A  V  L  L  F  F  F  M  R  F  C  K  L  L  A  *  L  I  R  V  F  F  S  F  E  I  A  V  P  I  *  F  K  S  S  N  G  C  T  F  L  F  F  I  S  L  F  C  S  R  F  V  *  L  F  Y  R  F  M  C  *  S  I  L  F  L  L  H  V  K  L  F  S  S  P  H  G  P  H  S  N  S  L  H  L  L  V  E  P  *  R  L  K  T  P  F  S  S  Q  P  T  S  *  K  Y  V  Q  V  G  E  K  K  T  Q  Q  K  L  L  E  K  I  V  A  E  I  *  R  R  C  I  Q  Q  Y  T  Y  F  I  H  C  I  H  *  Y  T  G  *  R  R  T  S  R  S  K  F  E  I  W  D  C  S  S  E  H  M  L  L  K  G  N  F  Q  L  L  K  V  E  K  Q  A  D  I  Q  P  V  Y  T  D  I  Q  K  H  Y  T  L  N  R  C  K  K  I  *  M  A  A  G  V  R  K  F  E  L  H  E  D  R  R  S  L  R  K  A  Y  *  K  I  F  I  Y  L  L  S  C  I  Y  F  G  H  K  P  L  S  F  L  L  S  L  Y  S  F  L  Y  V  *  T  R  T  G  T  K  E  R  N  G  L  K  T  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23912" stop="23622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYSRVLMDLTPIPCTFSLSHKGSKHLSRVSQPPESMYRSEKKKPSRNCLKKLLQRFEEDVYSSIHILYIVYTDIQVEGVQADPNSKSGIVAVNICF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49754" PGL_stop="50488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49754" e_stop="50488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="49754" e_stop="50488" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49754" stop="50488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGAAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAAACTTTCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCTTCACAAGCACGATGAACCGTCACAAGCACGACAGACCGTCACAAGCTCCGAAGGTGGTCTCTTCTGCATTTCTTTGCTTAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAATGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAAGTTAAATTCGTTGTTTTTCCTCAAGCAACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGTAATCATTTGGCTATCAATCCCGATTAATCTAATCAAATCTAAGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATCAGAACATGATACAGACTCACCACGCACTAACACTTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  F  *  N  T  S  T  L  E  I  W  V  L  G  S  L  L  *  T  S  R  R  T  C  R  T  D  R  H  R  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  N  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  *  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  *  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  C  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  K  L  N  S  L  F  F  L  K  Q  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  N  Q  I  *  A  C  Y  H  Y  *  A  *  I  L  W  D  Q  N  M  I  Q  T  H  H  A  L  T  L  I  L  F  N  F  S  P  R  C  *  Q  F  W  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  E  G  L  R  S  K  T  L  Q  L  L  K  S  G  Y  W  D  H  F  S  E  L  H  D  E  P  A  G  R  T  V  I  D  T  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  F  P  S  S  F  S  S  C  T  T  L  P  P  T  D  L  H  K  H  D  E  P  S  Q  A  R  Q  T  V  T  S  S  E  G  G  L  F  C  I  S  L  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  N  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  S  *  I  R  C  F  S  S  S  N  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  V  I  I  W  L  S  I  P  I  N  L  I  K  S  K  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  Y  R  L  T  T  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  K  Q  N  P  P  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   R  V  F  V  L  K  H  F  N  S  *  N  L  G  T  G  I  T  S  L  N  F  T  T  N  L  Q  D  G  P  S  *  T  R  R  T  V  T  S  F  V  I  P  H  L  V  K  L  S  H  L  P  S  A  A  A  L  R  C  H  L  R  T  F  T  S  T  M  N  R  H  K  H  D  R  P  S  Q  A  P  K  V  V  S  S  A  F  L  C  L  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  M  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  H  P  Q  V  K  F  V  V  F  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  S  M  F  Y  P  L  *  S  F  G  Y  Q  S  R  L  I  *  S  N  L  S  M  L  S  L  L  G  L  N  F  V  G  S  E  H  D  T  D  S  P  R  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  L  V  L  Q  L  V  S  S  L  *  N  K  I  L  L  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49755" stop="50090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRSKTLQLLKSGYWDHFSELHDEPAGRTVIDTTDRHKLRNPTLGQTFPSSFSSCTTLPPTDLHKHDEPSQARQTVTSSEGGLFCISLLKISAFSFGQISCKTKRNLYKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49852" stop="50136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVTSFVIPHLVKLSHLPSAAALRCHLRTFTSTMNRHKHDRPSQAPKVVSSAFLCLKSPHSALDRFPAKQRETYIKISTKMLLDTLNLRKKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="57483" PGL_stop="58016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57483" e_stop="58016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="57483" e_stop="58016" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57483" stop="58016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCGACGGACCATTGTGGTCACGACGGACCGTCGTGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTCTCTTCATTCCCCTCGACGGCAAGTATGACGGACCGTCATAGACACAACGGTCCGTCGAGGGTCTTCGTTCTAAAACAATTCAACTCTTGAAATCTGGGTACTGGAATCACTTCTCTGAACTTCACGACAAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTTAGACTTCCCCATCTTTCTTCAACAGCTGCACTACGCTGCAACCTACGGACCGTCACAAGCACGACGGACCGTCACAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGAAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGATTTTGTACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAAGTCGCCACCT</gDNA_template>
            <first_frame> S  R  R  T  I  V  V  T  T  D  R  R  G  L  R  R  P  I  L  V  Q  F  L  L  L  L  S  S  F  P  S  T  A  S  M  T  D  R  H  R  H  N  G  P  S  R  V  F  V  L  K  Q  F  N  S  *  N  L  G  T  G  I  T  S  L  N  F  T  T  N  L  Q  D  G  P  S  *  T  R  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  S  S  T  A  A  L  R  C  N  L  R  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  K  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  C  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  K  S  P  P </first_frame>
            <second_frame>  R  D  G  P  L  W  S  R  R  T  V  V  D  S  V  V  P  Y  L  C  N  F  F  C  C  S  L  H  S  P  R  R  Q  V  *  R  T  V  I  D  T  T  V  R  R  G  S  S  F  *  N  N  S  T  L  E  I  W  V  L  E  S  L  L  *  T  S  R  Q  T  C  R  T  D  R  H  R  H  D  G  P  S  Q  A  S  *  S  H  T  W  L  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  T  S  S  V  G  G  L  F  C  I  S  L  L  K  I  S  A  F  S  F  G  Q  I  S  *  K  T  K  R  N  L  Y  K  N  *  H  K  K  D  F  V  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  S  R  H   </second_frame>
            <third_frame>   A  T  D  H  C  G  H  D  G  P  S  W  T  P  S  S  H  T  C  A  I  S  S  A  A  L  F  I  P  L  D  G  K  Y  D  G  P  S  *  T  Q  R  S  V  E  G  L  R  S  K  T  I  Q  L  L  K  S  G  Y  W  N  H  F  S  E  L  H  D  K  P  A  G  R  T  V  I  D  T  T  D  R  H  K  L  R  N  P  T  L  G  *  T  S  P  S  F  F  N  S  C  T  T  L  Q  P  T  D  R  H  K  H  D  G  P  S  Q  A  P  *  V  V  S  S  A  F  L  C  S  K  S  P  H  S  A  L  D  R  F  P  E  K  Q  R  E  T  Y  I  K  I  S  T  K  R  I  L  Y  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  V  A  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57714" stop="57926"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVTSFVIPHLVRLPHLSSTAALRCNLRTVTSTTDRHKLRRWSLLHFFAQNLRIQLWTDFLKNKEKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="61614" PGL_stop="60724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61614" e_stop="60724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="61614" e_stop="60724" e_length="891"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61614" stop="60724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61605" stop="61031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATCAGCCGCCAGCCCCTCTCCCTCTCTCTCTCCGGCGACCCCTCTTCTTTTTCCCCCGGCCAGCCAGCAGCTGCTGGCCGCCTTGTTCCCTTCTCTTTCCCTTTATCTCATTCTCGCTTCTCTCTTCCTTCCTCTTTCCCCCTCTCCCTCTTCTTCTCTATTCCTCTTCCCGTTCTCTCCCTCTCTACTCGCCCTTCTCTCCAGCCGGCGAAACAAGCAGGAAGGCGACGACAACCAGCAGCTCCGGTCAGGCGAGTACACCGGCAACAGCCAGGCGCCGCCGTCTCCTTCTCCCTCTTTCCCTCTTCTTCTCCTCCGTCTTTTTTCCTCTCCCTTTTGGAGGACTTCCAGGCAGCAGCGACCAGTGCACCTCTAGCAATGGTGCAGTTTCTCCAGCAGCAGCAGCGAGAACAAAACCACCAGGCAGCAAAGATGCAGCAACCAGTGGACACAGCAGCCGACAATGCTGTTCCGACCGGCAAAGTCAGCAGCAGCTGCACCAACCAGCGCAGCTCCGCCCCAACCTTCAGCAATAACAACAACCGATATATAAAAACGAGGCATTAGGATAAGGACAGATCTTTATAGATCTGTCCCAAGTATGAATTTTTGTTCTCTAGTCTTAAATCCTTATTGTATGAGTTATTTTTCCTCAAAATCTCATCTTCTTCTCCAGCCTTAATTCATGTGAAATTCTTAACGCTTATTTTATCATATGATTAGTTTGTTAGAATTATGTGTCCTTTCCTTGCTCTCCTTTGTTTCTTTTGAAAATGAAGCACCCATGGTATTTCTCTGTCTCGGAATATATTTGTTCATACTCAATGTGTAATTGACTGTATACGACTGTGTCTAACCATATATGGCTGGTATATATTAATTTATTTGT</gDNA_template>
            <first_frame> A  S  A  A  S  P  S  P  S  L  S  P  A  T  P  L  L  F  P  P  A  S  Q  Q  L  L  A  A  L  F  P  S  L  S  L  Y  L  I  L  A  S  L  F  L  P  L  S  P  S  P  S  S  S  L  F  L  F  P  F  S  P  S  L  L  A  L  L  S  S  R  R  N  K  Q  E  G  D  D  N  Q  Q  L  R  S  G  E  Y  T  G  N  S  Q  A  P  P  S  P  S  P  S  F  P  L  L  L  L  R  L  F  S  S  P  F  W  R  T  S  R  Q  Q  R  P  V  H  L  *  Q  W  C  S  F  S  S  S  S  S  E  N  K  T  T  R  Q  Q  R  C  S  N  Q  W  T  Q  Q  P  T  M  L  F  R  P  A  K  S  A  A  A  A  P  T  S  A  A  P  P  Q  P  S  A  I  T  T  T  D  I  *  K  R  G  I  R  I  R  T  D  L  Y  R  S  V  P  S  M  N  F  C  S  L  V  L  N  P  Y  C  M  S  Y  F  S  S  K  S  H  L  L  L  Q  P  *  F  M  *  N  S  *  R  L  F  Y  H  M  I  S  L  L  E  L  C  V  L  S  L  L  S  F  V  S  F  E  N  E  A  P  M  V  F  L  C  L  G  I  Y  L  F  I  L  N  V  *  L  T  V  Y  D  C  V  *  P  Y  M  A  G  I  Y  *  F  I  C </first_frame>
            <second_frame>  H  Q  P  P  A  P  L  P  L  S  L  R  R  P  L  F  F  F  P  R  P  A  S  S  C  W  P  P  C  S  L  L  F  P  F  I  S  F  S  L  L  S  S  F  L  F  P  P  L  P  L  L  L  Y  S  S  S  R  S  L  P  L  Y  S  P  F  S  P  A  G  E  T  S  R  K  A  T  T  T  S  S  S  G  Q  A  S  T  P  A  T  A  R  R  R  R  L  L  L  P  L  S  L  F  F  S  S  V  F  F  P  L  P  F  G  G  L  P  G  S  S  D  Q  C  T  S  S  N  G  A  V  S  P  A  A  A  A  R  T  K  P  P  G  S  K  D  A  A  T  S  G  H  S  S  R  Q  C  C  S  D  R  Q  S  Q  Q  Q  L  H  Q  P  A  Q  L  R  P  N  L  Q  Q  *  Q  Q  P  I  Y  K  N  E  A  L  G  *  G  Q  I  F  I  D  L  S  Q  V  *  I  F  V  L  *  S  *  I  L  I  V  *  V  I  F  P  Q  N  L  I  F  F  S  S  L  N  S  C  E  I  L  N  A  Y  F  I  I  *  L  V  C  *  N  Y  V  S  F  P  C  S  P  L  F  L  L  K  M  K  H  P  W  Y  F  S  V  S  E  Y  I  C  S  Y  S  M  C  N  *  L  Y  T  T  V  S  N  H  I  W  L  V  Y  I  N  L  F   </second_frame>
            <third_frame>   I  S  R  Q  P  L  S  L  S  L  S  G  D  P  S  S  F  S  P  G  Q  P  A  A  A  G  R  L  V  P  F  S  F  P  L  S  H  S  R  F  S  L  P  S  S  F  P  L  S  L  F  F  S  I  P  L  P  V  L  S  L  S  T  R  P  S  L  Q  P  A  K  Q  A  G  R  R  R  Q  P  A  A  P  V  R  R  V  H  R  Q  Q  P  G  A  A  V  S  F  S  L  F  P  S  S  S  P  P  S  F  F  L  S  L  L  E  D  F  Q  A  A  A  T  S  A  P  L  A  M  V  Q  F  L  Q  Q  Q  Q  R  E  Q  N  H  Q  A  A  K  M  Q  Q  P  V  D  T  A  A  D  N  A  V  P  T  G  K  V  S  S  S  C  T  N  Q  R  S  S  A  P  T  F  S  N  N  N  N  R  Y  I  K  T  R  H  *  D  K  D  R  S  L  *  I  C  P  K  Y  E  F  L  F  S  S  L  K  S  L  L  Y  E  L  F  F  L  K  I  S  S  S  S  P  A  L  I  H  V  K  F  L  T  L  I  L  S  Y  D  *  F  V  R  I  M  C  P  F  L  A  L  L  C  F  F  *  K  *  S  T  H  G  I  S  L  S  R  N  I  F  V  H  T  Q  C  V  I  D  C  I  R  L  C  L  T  I  Y  G  W  Y  I  L  I  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61612" stop="61046"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRQPLSLSLSGDPSSFSPGQPAAAGRLVPFSFPLSHSRFSLPSSFPLSLFFSIPLPVLSLSTRPSLQPAKQAGRRRQPAAPVRRVHRQQPGAAVSFSLFPSSSPPSFFLSLLEDFQAAATSAPLAMVQFLQQQQREQNHQAAKMQQPVDTAADNAVPTGKVSSSCTNQRSSAPTFSNNNNRYIKTRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61613" stop="61077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQPPAPLPLSLRRPLFFFPRPASSCWPPCSLLFPFISFSLLSSFLFPPLPLLLYSSSRSLPLYSPFSPAGETSRKATTTSSSGQASTPATARRRRLLLPLSLFFSSVFFPLPFGGLPGSSDQCTSSNGAVSPAAAARTKPPGSKDAATSGHSSRQCCSDRQSQQQLHQPAQLRPNLQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="82929" PGL_stop="89389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82929" e_stop="83473"/>
            <exon e_start="84788" e_stop="84922"/>
            <exon e_start="85020" e_stop="85160"/>
            <exon e_start="85241" e_stop="85352"/>
            <exon e_start="85557" e_stop="85627"/>
            <exon e_start="85851" e_stop="86005"/>
            <exon e_start="86098" e_stop="86209"/>
            <exon e_start="86438" e_stop="86539"/>
            <exon e_start="86630" e_stop="86690"/>
            <exon e_start="86778" e_stop="86946"/>
            <exon e_start="87019" e_stop="87115"/>
            <exon e_start="87200" e_stop="87294"/>
            <exon e_start="88098" e_stop="88231"/>
            <exon e_start="88445" e_stop="88969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82929" e_stop="83473" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84788" e_stop="84922" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85020" e_stop="85160" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85241" e_stop="85352" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85353" i_stop="85556" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85557" e_stop="85627" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85851" e_stop="86005" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86098" e_stop="86209" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.917">
            <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86438" e_stop="86539" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="86630" e_stop="86690" e_length="61"/>
          </exon>
          <intron i_serial="9" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="86778" e_stop="86946" e_length="169"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87019" e_stop="87115" e_length="97"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="87200" e_stop="87294" e_length="95"/>
          </exon>
          <intron i_serial="12" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="88098" e_stop="88231" e_length="134"/>
          </exon>
          <intron i_serial="13" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213"/>
          </intron>
          <exon e_serial="14" e_score="0.992">
            <gDNA_exon_boundary e_start="88445" e_stop="88969" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82929" stop="83471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82930" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82940" stop="83444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82943" stop="83473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82944" stop="83366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82950" stop="83327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82953" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82968" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83288" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83314" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84914" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85290" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85293" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85926" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85971" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86189" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86507" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86800" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86813" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86869" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87022" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88123" stop="88231"/>
              <exon start="88445" stop="88773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88178" stop="88231"/>
              <exon start="88445" stop="88685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88548" stop="88918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88557" stop="88828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88579" stop="88943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88598" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88600" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG : GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG : GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG : GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG : GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT : ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG : TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG : GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG : TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT : GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</gDNA_template>
            <first_frame> C  F  C  A  *  L  Q  N  T  P  F  S  A  G  E  Q  F  P  L  Q  T  K  S  S  C  L  H  L  L  *  L  K  K  Q  W  P  P  S  Y  P  R  K  K  *  R  R  H  P  K  L  I  L  K  L  L  L  I  R  K  P  K  R  K  S  Q  K  N  P  R  L  S  L  G  L  I  Q  R  T  L  K  G  V  K  R  K  R  K  R  E  K  L  W  T  W  M  V  R  R  V  I  R  A  Q  R  Y  A  S  P  *  I  *  R  R  I  K  R  L  N  S  T  T  N  K  *  W  L  R  R  K  S  R  I  L  M  L  C  L  I  L  G  F  Q  S  L  *  K  R  L  *  I  L  R  E  *  K  H  F  F  L  F  K  L  *  L  L  M  I  F  L  M  D  V  I  W  L  V  E  L  V  L  G  R :   V  K  R  W  P  L  F  Y  P  Y  W  S  P  *  R  M  V  L  L  K  H  Y  E  K  Q  G  M  G  R  L  L  V  F  W  C  F  Y  L  L  G  N  W  H  F  R :   C  L  L  T  L  K  S  M  A  G  L  L  G  S  L  H  A  V  C  M  E  I  L  L  W  G  H  N  R  L  N  *  K  E  E  L  T  L  *  W  V  L  L  E  G  L  R :   T  T  L  K  G  E  I  L  I  S  G  L  *  S  S  V  F  L  M  K  S  M  K  C  *  K  L  V  L  *  M  M  S  N  L  F  *  :  A  R  S  K  M  Q  A  *  F  K  Q  F  F  S  V  P  L  C  Q  S  G  *  S  I :   L  L  L  S  F  *  N  Q  I  R  K  R  L  T  L  L  V  M  R  K  *  R  P  V  K  M  *  G  I  L  L  F  H  A  L  V  L  Q  D  L  S  L  F  L  I  S  F  G  A  T  A   : V  E  D  V  Q  L  F  L  L  R  Q  G  R  W  L  Q  S  *  L  A  Y  C  L  G  Q  V  L  C  M  G  R  Y  N  R  T  S  V  R :   L  H  L  K  D  S  D  Q  A  N  S  *  H  *  W  P  Q  M  W  Q  P  V  D  W  I  S  M  M  F  S  *  L  S  S :   A  K  P  L  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L :   A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L  W  K  R  C  L  L  C  K  R  E  R  S  Q  E  V  E  D  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V  A  D  G  K  E  W  R  H  N  F  F  D  S  *  Q  Y  K  S  L  S  K  A  A  F  K  I  L  V  *  *  R  K  C  M  G  L  Q  *  G  F  F  C  I  N  F  T  N  L  Y  R  F  L  L  P  V  P  C  F  I  M  L  F  A  S  *  L  S  C  S  V  L  P  C  F  T  I  F  L  V  R  H  L  K  S  Y  Y  L  F  C  M  V  L  L  P  E  E  I  I  F  N  S  S  S  I  Y  Y  M  F  G  Y  T  L  K  K </first_frame>
            <second_frame>  A  S  A  P  N  C  R  I  H  R  F  R  Q  E  S  N  S  P  Y  K  Q  S  H  H  A  C  T  C  C  N  *  R  N  N  G  L  R  A  I  Q  E  K  N  E  E  D  T  Q  N  *  Y  *  N  S  Y  *  *  E  N  Q  R  E  K  V  K  K  I  Q  D  *  V  W  V  *  F  R  G  R  *  K  E  *  K  E  R  E  K  E  K  S  F  G  L  G  W  *  E  E  *  Y  E  L  R  D  M  R  A  R  R  F  E  E  E  *  K  G  *  I  R  R  R  T  S  D  G  *  E  E  S  R  G  S  *  C  F  V  *  F  *  D  F  K  A  F  K  R  G  F  E  F  *  G  N  R  S  T  F  S  Y  S  S  Y  D  F  *  *  Y  S  *  W  M  *  F  G  W  S  S  S  Y  W  A   : G  *  N  A  G  L  C  F  T  H  I  G  V  P  N  E  W  S  Y  *  S  I  T  K  N  R  V  W  E  G  S  *  C  S  G  A  F  T  Y  *  G  I  G  T  S   : G  V  C  *  L  *  S  L  W  P  G  C  W  A  H  F  M  L  F  V  W  K  F  S  Y  G  G  T  T  G  S  T  K  K  R  S  *  H  C  S  G  Y  S  W  K  G  *   : G  P  H  *  K  G  K  Y  *  F  R  V  F  E  V  P  C  S  *  *  S  R  *  N  V  K  N  W  F  C  R  *  C  R  I  Y  F  R :   Q  G  R  R  C  K  P  S  S  N  S  S  F  Q  C  H  F  A  S  L  G  E  A   : Y  C  F  *  V  S  E  T  R  *  E  N  G  *  P  C  W  *  *  E  N  E  G  Q  *  K  C  E  A  Y  Y  Y  S  M  L  *  F  C  K  T  S  A  Y  S  *  Y  H  S  V  L  R  Q  :  W  R  T  Y  N  Y  F  Y  *  D  K  G  A  G  F  R  A  S  W  L  T  A  W  G  K  C  F  A  W  G  D  T  T  E  P  A  *   : G  Y  T  *  R  I  Q  I  R  Q  I  H  D  I  S  G  H  K  C  G  S  P  W  I  G  Y  R  *  C  S  V  N  Y  P   : V  R  S  H  *  *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C   : W  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G  C  G  S  A  A  S  F  A  R  E  R  E  A  K  R  W  K  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  Q  M  V  R  N  G  D  I  I  F  L  I  A  D  N  T  R  V  C  P  R  L  R  S  K  F  W  Y  S  E  E  N  V  W  D  F  S  K  V  S  S  V  L  I  L  L  I  Y  I  G  F  S  S  L  Y  P  A  S  L  C  F  S  L  V  S  F  L  V  V  F  F  H  V  L  L  Y  F  W  L  D  T  *  K  V  I  I  Y  F  V  W  Y  C  Y  L  K  K  S  Y  S  I  Q  V  Q  F  T  I  C  L  V  T  H  L  K   </second_frame>
            <third_frame>   L  L  R  L  T  A  E  Y  T  V  F  G  R  R  A  I  P  P  T  N  K  V  I  M  P  A  L  V  V  T  E  E  T  M  A  S  E  L  S  K  K  K  M  K  K  T  P  K  T  D  I  E  T  P  T  D  K  K  T  K  E  K  K  S  K  K  S  K  I  E  S  G  S  D  S  E  D  A  K  R  S  K  K  K  E  K  K  R  K  A  L  D  L  D  G  E  K  S  D  T  S  S  E  I  C  E  P  V  D  L  K  K  N  K  K  A  K  F  D  D  E  Q  V  M  V  E  K  K  V  E  D  P  N  A  L  S  N  F  R  I  S  K  P  L  K  E  A  L  N  S  K  G  I  E  A  L  F  P  I  Q  A  M  T  F  D  D  I  L  D  G  C  D  L  V  G  R  A  R  T  G  Q  :  G  K  T  L  A  F  V  L  P  I  L  E  S  L  T  N  G  P  T  K  A  L  R  K  T  G  Y  G  K  A  P  S  V  L  V  L  L  P  T  R  E  L  A  L  Q  :  V  F  A  D  F  E  V  Y  G  R  A  V  G  L  T  S  C  C  L  Y  G  N  S  P  M  G  A  Q  Q  A  Q  L  K  R  G  V  D  I  V  V  G  T  P  G  R  V  K  :  D  H  I  E  R  G  N  I  D  F  G  S  L  K  F  R  V  L  D  E  V  D  E  M  L  K  I  G  F  V  D  D  V  E  F  I  L   : G  K  V  E  D  A  S  L  V  Q  T  V  L  F  S  A  T  L  P  V  W  V  K  H  :  I  A  S  K  F  L  K  P  D  K  K  T  A  D  L  V  G  N  E  K  M  K  A  S  K  N  V  R  H  I  I  I  P  C  S  S  S  A  R  P  Q  L  I  P  D  I  I  R  C  Y  G  S :   G  G  R  T  I  I  F  T  E  T  R  A  L  A  S  E  L  A  G  L  L  P  G  A  S  A  L  H  G  E  I  Q  Q  N  Q  R  E  :  A  T  L  K  G  F  R  S  G  K  F  M  T  L  V  A  T  N  V  A  A  R  G  L  D  I  D  D  V  Q  L  I  I  Q  :  C  E  A  T  S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  :  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  V  E  A  L  P  P  L  Q  E  R  E  K  P  R  G  G  R  F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R  R  W  *  G  M  A  T  *  F  F  *  *  L  T  I  Q  E  F  V  Q  G  C  V  Q  N  F  G  I  V  K  K  M  Y  G  T  S  V  R  F  L  L  Y  *  F  Y  *  F  I  *  V  S  P  P  C  T  L  L  H  Y  A  F  R  *  L  A  F  L  *  C  S  S  M  F  Y  Y  I  F  G  *  T  L  E  K  L  L  F  I  L  Y  G  I  V  T  *  R  N  H  I  Q  F  K  F  N  L  L  Y  V  W  L  H  T  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82931" stop="83473"/>
                    <exon start="84788" stop="84922"/>
                    <exon start="85020" stop="85160"/>
                    <exon start="85241" stop="85352"/>
                    <exon start="85557" stop="85627"/>
                    <exon start="85851" stop="86005"/>
                    <exon start="86098" stop="86209"/>
                    <exon start="86438" stop="86539"/>
                    <exon start="86630" stop="86690"/>
                    <exon start="86778" stop="86946"/>
                    <exon start="87019" stop="87115"/>
                    <exon start="87200" stop="87294"/>
                    <exon start="88098" stop="88231"/>
                    <exon start="88445" stop="88638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2118</number_coding_nucleotides>
                  <number_encoded_amino_acids>706</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRLTAEYTVFGRRAIPPTNKVIMPALVVTEETMASELSKKKMKKTPKTDIETPTDKKTKEKKSKKSKIESGSDSEDAKRSKKKEKKRKALDLDGEKSDTSSEICEPVDLKKNKKAKFDDEQVMVEKKVEDPNALSNFRISKPLKEALNSKGIEALFPIQAMTFDDILDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKALRKTGYGKAPSVLVLLPTRELALQVFADFEVYGRAVGLTSCCLYGNSPMGAQQAQLKRGVDIVVGTPGRVKDHIERGNIDFGSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASLVQTVLFSATLPVWVKHIASKFLKPDKKTADLVGNEKMKASKNVRHIIIPCSSSARPQLIPDIIRCYGSGGRTIIFTETRALASELAGLLPGASALHGEIQQNQREATLKGFRSGKFMTLVATNVAARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVVEALPPLQEREKPRGGRFGGGGRGGGFGNRRGGGGFSGGRGGRGNGNFGRRW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88614" stop="88874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQLWSQMVRNGDIIFLIADNTRVCPRLRSKFWYSEENVWDFSKVSSVLILLIYIGFSSLYPASLCFSLVSFLVVFFHVLLYFWLDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82929" e_stop="83473"/>
            <exon e_start="84788" e_stop="84922"/>
            <exon e_start="85020" e_stop="85160"/>
            <exon e_start="85241" e_stop="85352"/>
            <exon e_start="85557" e_stop="85627"/>
            <exon e_start="85851" e_stop="86005"/>
            <exon e_start="86098" e_stop="86209"/>
            <exon e_start="86438" e_stop="86539"/>
            <exon e_start="86630" e_stop="86690"/>
            <exon e_start="86778" e_stop="86946"/>
            <exon e_start="87019" e_stop="87115"/>
            <exon e_start="87200" e_stop="87294"/>
            <exon e_start="88098" e_stop="88231"/>
            <exon e_start="88445" e_stop="88947"/>
            <exon e_start="89375" e_stop="89389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82929" e_stop="83473" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84788" e_stop="84922" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85020" e_stop="85160" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85241" e_stop="85352" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85353" i_stop="85556" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85557" e_stop="85627" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85851" e_stop="86005" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86098" e_stop="86209" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.917">
            <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86438" e_stop="86539" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="86630" e_stop="86690" e_length="61"/>
          </exon>
          <intron i_serial="9" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="86778" e_stop="86946" e_length="169"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87019" e_stop="87115" e_length="97"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="87200" e_stop="87294" e_length="95"/>
          </exon>
          <intron i_serial="12" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="88098" e_stop="88231" e_length="134"/>
          </exon>
          <intron i_serial="13" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213"/>
          </intron>
          <exon e_serial="14" e_score="0.994">
            <gDNA_exon_boundary e_start="88445" e_stop="88947" e_length="503"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88948" i_stop="89374" i_length="427"/>
          </intron>
          <exon e_serial="15" e_score="0.733">
            <gDNA_exon_boundary e_start="89375" e_stop="89389" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82929" stop="83471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82930" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82940" stop="83444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82943" stop="83473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82944" stop="83366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82950" stop="83327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82953" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82968" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83288" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83314" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84914" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85290" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85293" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85926" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85971" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86189" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86507" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86800" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86813" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86869" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87022" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88123" stop="88231"/>
              <exon start="88445" stop="88773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88178" stop="88231"/>
              <exon start="88445" stop="88685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88219" stop="88231"/>
              <exon start="88445" stop="88947"/>
              <exon start="89375" stop="89389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88548" stop="88918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88557" stop="88828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88579" stop="88943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG : GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG : GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG : GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG : GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT : ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG : TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG : GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG : TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT : GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATAT : TAAAAATAAATAAAT</gDNA_template>
            <first_frame> C  F  C  A  *  L  Q  N  T  P  F  S  A  G  E  Q  F  P  L  Q  T  K  S  S  C  L  H  L  L  *  L  K  K  Q  W  P  P  S  Y  P  R  K  K  *  R  R  H  P  K  L  I  L  K  L  L  L  I  R  K  P  K  R  K  S  Q  K  N  P  R  L  S  L  G  L  I  Q  R  T  L  K  G  V  K  R  K  R  K  R  E  K  L  W  T  W  M  V  R  R  V  I  R  A  Q  R  Y  A  S  P  *  I  *  R  R  I  K  R  L  N  S  T  T  N  K  *  W  L  R  R  K  S  R  I  L  M  L  C  L  I  L  G  F  Q  S  L  *  K  R  L  *  I  L  R  E  *  K  H  F  F  L  F  K  L  *  L  L  M  I  F  L  M  D  V  I  W  L  V  E  L  V  L  G  R :   V  K  R  W  P  L  F  Y  P  Y  W  S  P  *  R  M  V  L  L  K  H  Y  E  K  Q  G  M  G  R  L  L  V  F  W  C  F  Y  L  L  G  N  W  H  F  R :   C  L  L  T  L  K  S  M  A  G  L  L  G  S  L  H  A  V  C  M  E  I  L  L  W  G  H  N  R  L  N  *  K  E  E  L  T  L  *  W  V  L  L  E  G  L  R :   T  T  L  K  G  E  I  L  I  S  G  L  *  S  S  V  F  L  M  K  S  M  K  C  *  K  L  V  L  *  M  M  S  N  L  F  *  :  A  R  S  K  M  Q  A  *  F  K  Q  F  F  S  V  P  L  C  Q  S  G  *  S  I :   L  L  L  S  F  *  N  Q  I  R  K  R  L  T  L  L  V  M  R  K  *  R  P  V  K  M  *  G  I  L  L  F  H  A  L  V  L  Q  D  L  S  L  F  L  I  S  F  G  A  T  A   : V  E  D  V  Q  L  F  L  L  R  Q  G  R  W  L  Q  S  *  L  A  Y  C  L  G  Q  V  L  C  M  G  R  Y  N  R  T  S  V  R :   L  H  L  K  D  S  D  Q  A  N  S  *  H  *  W  P  Q  M  W  Q  P  V  D  W  I  S  M  M  F  S  *  L  S  S :   A  K  P  L  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L :   A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L  W  K  R  C  L  L  C  K  R  E  R  S  Q  E  V  E  D  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V  A  D  G  K  E  W  R  H  N  F  F  D  S  *  Q  Y  K  S  L  S  K  A  A  F  K  I  L  V  *  *  R  K  C  M  G  L  Q  *  G  F  F  C  I  N  F  T  N  L  Y  R  F  L  L  P  V  P  C  F  I  M  L  F  A  S  *  L  S  C  S  V  L  P  C  F  T  I  F  L  V  R  H  L  K  S  Y  Y  L  F  C  M  V  L  L  P  E  E  I  I  F  N  S  S  S  I  Y  Y  I :   K  N  K  *   </first_frame>
            <second_frame>  A  S  A  P  N  C  R  I  H  R  F  R  Q  E  S  N  S  P  Y  K  Q  S  H  H  A  C  T  C  C  N  *  R  N  N  G  L  R  A  I  Q  E  K  N  E  E  D  T  Q  N  *  Y  *  N  S  Y  *  *  E  N  Q  R  E  K  V  K  K  I  Q  D  *  V  W  V  *  F  R  G  R  *  K  E  *  K  E  R  E  K  E  K  S  F  G  L  G  W  *  E  E  *  Y  E  L  R  D  M  R  A  R  R  F  E  E  E  *  K  G  *  I  R  R  R  T  S  D  G  *  E  E  S  R  G  S  *  C  F  V  *  F  *  D  F  K  A  F  K  R  G  F  E  F  *  G  N  R  S  T  F  S  Y  S  S  Y  D  F  *  *  Y  S  *  W  M  *  F  G  W  S  S  S  Y  W  A   : G  *  N  A  G  L  C  F  T  H  I  G  V  P  N  E  W  S  Y  *  S  I  T  K  N  R  V  W  E  G  S  *  C  S  G  A  F  T  Y  *  G  I  G  T  S   : G  V  C  *  L  *  S  L  W  P  G  C  W  A  H  F  M  L  F  V  W  K  F  S  Y  G  G  T  T  G  S  T  K  K  R  S  *  H  C  S  G  Y  S  W  K  G  *   : G  P  H  *  K  G  K  Y  *  F  R  V  F  E  V  P  C  S  *  *  S  R  *  N  V  K  N  W  F  C  R  *  C  R  I  Y  F  R :   Q  G  R  R  C  K  P  S  S  N  S  S  F  Q  C  H  F  A  S  L  G  E  A   : Y  C  F  *  V  S  E  T  R  *  E  N  G  *  P  C  W  *  *  E  N  E  G  Q  *  K  C  E  A  Y  Y  Y  S  M  L  *  F  C  K  T  S  A  Y  S  *  Y  H  S  V  L  R  Q  :  W  R  T  Y  N  Y  F  Y  *  D  K  G  A  G  F  R  A  S  W  L  T  A  W  G  K  C  F  A  W  G  D  T  T  E  P  A  *   : G  Y  T  *  R  I  Q  I  R  Q  I  H  D  I  S  G  H  K  C  G  S  P  W  I  G  Y  R  *  C  S  V  N  Y  P   : V  R  S  H  *  *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C   : W  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G  C  G  S  A  A  S  F  A  R  E  R  E  A  K  R  W  K  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  Q  M  V  R  N  G  D  I  I  F  L  I  A  D  N  T  R  V  C  P  R  L  R  S  K  F  W  Y  S  E  E  N  V  W  D  F  S  K  V  S  S  V  L  I  L  L  I  Y  I  G  F  S  S  L  Y  P  A  S  L  C  F  S  L  V  S  F  L  V  V  F  F  H  V  L  L  Y  F  W  L  D  T  *  K  V  I  I  Y  F  V  W  Y  C  Y  L  K  K  S  Y  S  I  Q  V  Q  F  T  I   : L  K  I  N  K  </second_frame>
            <third_frame>   L  L  R  L  T  A  E  Y  T  V  F  G  R  R  A  I  P  P  T  N  K  V  I  M  P  A  L  V  V  T  E  E  T  M  A  S  E  L  S  K  K  K  M  K  K  T  P  K  T  D  I  E  T  P  T  D  K  K  T  K  E  K  K  S  K  K  S  K  I  E  S  G  S  D  S  E  D  A  K  R  S  K  K  K  E  K  K  R  K  A  L  D  L  D  G  E  K  S  D  T  S  S  E  I  C  E  P  V  D  L  K  K  N  K  K  A  K  F  D  D  E  Q  V  M  V  E  K  K  V  E  D  P  N  A  L  S  N  F  R  I  S  K  P  L  K  E  A  L  N  S  K  G  I  E  A  L  F  P  I  Q  A  M  T  F  D  D  I  L  D  G  C  D  L  V  G  R  A  R  T  G  Q  :  G  K  T  L  A  F  V  L  P  I  L  E  S  L  T  N  G  P  T  K  A  L  R  K  T  G  Y  G  K  A  P  S  V  L  V  L  L  P  T  R  E  L  A  L  Q  :  V  F  A  D  F  E  V  Y  G  R  A  V  G  L  T  S  C  C  L  Y  G  N  S  P  M  G  A  Q  Q  A  Q  L  K  R  G  V  D  I  V  V  G  T  P  G  R  V  K  :  D  H  I  E  R  G  N  I  D  F  G  S  L  K  F  R  V  L  D  E  V  D  E  M  L  K  I  G  F  V  D  D  V  E  F  I  L   : G  K  V  E  D  A  S  L  V  Q  T  V  L  F  S  A  T  L  P  V  W  V  K  H  :  I  A  S  K  F  L  K  P  D  K  K  T  A  D  L  V  G  N  E  K  M  K  A  S  K  N  V  R  H  I  I  I  P  C  S  S  S  A  R  P  Q  L  I  P  D  I  I  R  C  Y  G  S :   G  G  R  T  I  I  F  T  E  T  R  A  L  A  S  E  L  A  G  L  L  P  G  A  S  A  L  H  G  E  I  Q  Q  N  Q  R  E  :  A  T  L  K  G  F  R  S  G  K  F  M  T  L  V  A  T  N  V  A  A  R  G  L  D  I  D  D  V  Q  L  I  I  Q  :  C  E  A  T  S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  :  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  V  E  A  L  P  P  L  Q  E  R  E  K  P  R  G  G  R  F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R  R  W  *  G  M  A  T  *  F  F  *  *  L  T  I  Q  E  F  V  Q  G  C  V  Q  N  F  G  I  V  K  K  M  Y  G  T  S  V  R  F  L  L  Y  *  F  Y  *  F  I  *  V  S  P  P  C  T  L  L  H  Y  A  F  R  *  L  A  F  L  *  C  S  S  M  F  Y  Y  I  F  G  *  T  L  E  K  L  L  F  I  L  Y  G  I  V  T  *  R  N  H  I  Q  F  K  F  N  L  L  Y  :  *  K  *  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82931" stop="83473"/>
                    <exon start="84788" stop="84922"/>
                    <exon start="85020" stop="85160"/>
                    <exon start="85241" stop="85352"/>
                    <exon start="85557" stop="85627"/>
                    <exon start="85851" stop="86005"/>
                    <exon start="86098" stop="86209"/>
                    <exon start="86438" stop="86539"/>
                    <exon start="86630" stop="86690"/>
                    <exon start="86778" stop="86946"/>
                    <exon start="87019" stop="87115"/>
                    <exon start="87200" stop="87294"/>
                    <exon start="88098" stop="88231"/>
                    <exon start="88445" stop="88638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2118</number_coding_nucleotides>
                  <number_encoded_amino_acids>706</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRLTAEYTVFGRRAIPPTNKVIMPALVVTEETMASELSKKKMKKTPKTDIETPTDKKTKEKKSKKSKIESGSDSEDAKRSKKKEKKRKALDLDGEKSDTSSEICEPVDLKKNKKAKFDDEQVMVEKKVEDPNALSNFRISKPLKEALNSKGIEALFPIQAMTFDDILDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKALRKTGYGKAPSVLVLLPTRELALQVFADFEVYGRAVGLTSCCLYGNSPMGAQQAQLKRGVDIVVGTPGRVKDHIERGNIDFGSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASLVQTVLFSATLPVWVKHIASKFLKPDKKTADLVGNEKMKASKNVRHIIIPCSSSARPQLIPDIIRCYGSGGRTIIFTETRALASELAGLLPGASALHGEIQQNQREATLKGFRSGKFMTLVATNVAARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVVEALPPLQEREKPRGGRFGGGGRGGGFGNRRGGGGFSGGRGGRGNGNFGRRW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88614" stop="88874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQLWSQMVRNGDIIFLIADNTRVCPRLRSKFWYSEENVWDFSKVSSVLILLIYIGFSSLYPASLCFSLVSFLVVFFHVLLYFWLDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="82929" e_stop="83473"/>
            <exon e_start="84788" e_stop="84922"/>
            <exon e_start="85020" e_stop="85160"/>
            <exon e_start="85241" e_stop="85352"/>
            <exon e_start="85557" e_stop="85627"/>
            <exon e_start="85851" e_stop="86005"/>
            <exon e_start="86098" e_stop="86209"/>
            <exon e_start="86438" e_stop="86539"/>
            <exon e_start="86630" e_stop="86690"/>
            <exon e_start="86778" e_stop="86946"/>
            <exon e_start="87019" e_stop="87294"/>
            <exon e_start="88098" e_stop="88231"/>
            <exon e_start="88445" e_stop="88969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82929" e_stop="83473" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84788" e_stop="84922" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85020" e_stop="85160" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85241" e_stop="85352" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85353" i_stop="85556" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85557" e_stop="85627" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85851" e_stop="86005" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86098" e_stop="86209" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.917">
            <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86438" e_stop="86539" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="86630" e_stop="86690" e_length="61"/>
          </exon>
          <intron i_serial="9" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="86778" e_stop="86946" e_length="169"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87019" e_stop="87294" e_length="276"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="88098" e_stop="88231" e_length="134"/>
          </exon>
          <intron i_serial="12" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213"/>
          </intron>
          <exon e_serial="13" e_score="0.961">
            <gDNA_exon_boundary e_start="88445" e_stop="88969" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82929" stop="83471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82930" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82940" stop="83444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82943" stop="83473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82944" stop="83366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82950" stop="83327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82953" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82968" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83288" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83314" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84914" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85290" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85293" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85926" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86642" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88123" stop="88231"/>
              <exon start="88445" stop="88773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88178" stop="88231"/>
              <exon start="88445" stop="88685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88548" stop="88918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88557" stop="88828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88579" stop="88943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88598" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88600" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG : GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG : GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG : GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG : GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT : ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG : TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG : GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG : TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCTGTATGTTTCTGTTGTCTTATTTATTCTCTCTGGGAGGCAAACCTCCTTATCTTACTGTTGACTATCTTGTGTCTTGCTTTCCAGGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</gDNA_template>
            <first_frame> C  F  C  A  *  L  Q  N  T  P  F  S  A  G  E  Q  F  P  L  Q  T  K  S  S  C  L  H  L  L  *  L  K  K  Q  W  P  P  S  Y  P  R  K  K  *  R  R  H  P  K  L  I  L  K  L  L  L  I  R  K  P  K  R  K  S  Q  K  N  P  R  L  S  L  G  L  I  Q  R  T  L  K  G  V  K  R  K  R  K  R  E  K  L  W  T  W  M  V  R  R  V  I  R  A  Q  R  Y  A  S  P  *  I  *  R  R  I  K  R  L  N  S  T  T  N  K  *  W  L  R  R  K  S  R  I  L  M  L  C  L  I  L  G  F  Q  S  L  *  K  R  L  *  I  L  R  E  *  K  H  F  F  L  F  K  L  *  L  L  M  I  F  L  M  D  V  I  W  L  V  E  L  V  L  G  R :   V  K  R  W  P  L  F  Y  P  Y  W  S  P  *  R  M  V  L  L  K  H  Y  E  K  Q  G  M  G  R  L  L  V  F  W  C  F  Y  L  L  G  N  W  H  F  R :   C  L  L  T  L  K  S  M  A  G  L  L  G  S  L  H  A  V  C  M  E  I  L  L  W  G  H  N  R  L  N  *  K  E  E  L  T  L  *  W  V  L  L  E  G  L  R :   T  T  L  K  G  E  I  L  I  S  G  L  *  S  S  V  F  L  M  K  S  M  K  C  *  K  L  V  L  *  M  M  S  N  L  F  *  :  A  R  S  K  M  Q  A  *  F  K  Q  F  F  S  V  P  L  C  Q  S  G  *  S  I :   L  L  L  S  F  *  N  Q  I  R  K  R  L  T  L  L  V  M  R  K  *  R  P  V  K  M  *  G  I  L  L  F  H  A  L  V  L  Q  D  L  S  L  F  L  I  S  F  G  A  T  A   : V  E  D  V  Q  L  F  L  L  R  Q  G  R  W  L  Q  S  *  L  A  Y  C  L  G  Q  V  L  C  M  G  R  Y  N  R  T  S  V  R :   L  H  L  K  D  S  D  Q  A  N  S  *  H  *  W  P  Q  M  W  Q  P  V  D  W  I  S  M  M  F  S  *  L  S  S :   A  K  P  L  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L  Y  V  S  V  V  L  F  I  L  S  G  R  Q  T  S  L  S  Y  C  *  L  S  C  V  L  L  S  R  A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L  W  K  R  C  L  L  C  K  R  E  R  S  Q  E  V  E  D  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V  A  D  G  K  E  W  R  H  N  F  F  D  S  *  Q  Y  K  S  L  S  K  A  A  F  K  I  L  V  *  *  R  K  C  M  G  L  Q  *  G  F  F  C  I  N  F  T  N  L  Y  R  F  L  L  P  V  P  C  F  I  M  L  F  A  S  *  L  S  C  S  V  L  P  C  F  T  I  F  L  V  R  H  L  K  S  Y  Y  L  F  C  M  V  L  L  P  E  E  I  I  F  N  S  S  S  I  Y  Y  M  F  G  Y  T  L  K  K </first_frame>
            <second_frame>  A  S  A  P  N  C  R  I  H  R  F  R  Q  E  S  N  S  P  Y  K  Q  S  H  H  A  C  T  C  C  N  *  R  N  N  G  L  R  A  I  Q  E  K  N  E  E  D  T  Q  N  *  Y  *  N  S  Y  *  *  E  N  Q  R  E  K  V  K  K  I  Q  D  *  V  W  V  *  F  R  G  R  *  K  E  *  K  E  R  E  K  E  K  S  F  G  L  G  W  *  E  E  *  Y  E  L  R  D  M  R  A  R  R  F  E  E  E  *  K  G  *  I  R  R  R  T  S  D  G  *  E  E  S  R  G  S  *  C  F  V  *  F  *  D  F  K  A  F  K  R  G  F  E  F  *  G  N  R  S  T  F  S  Y  S  S  Y  D  F  *  *  Y  S  *  W  M  *  F  G  W  S  S  S  Y  W  A   : G  *  N  A  G  L  C  F  T  H  I  G  V  P  N  E  W  S  Y  *  S  I  T  K  N  R  V  W  E  G  S  *  C  S  G  A  F  T  Y  *  G  I  G  T  S   : G  V  C  *  L  *  S  L  W  P  G  C  W  A  H  F  M  L  F  V  W  K  F  S  Y  G  G  T  T  G  S  T  K  K  R  S  *  H  C  S  G  Y  S  W  K  G  *   : G  P  H  *  K  G  K  Y  *  F  R  V  F  E  V  P  C  S  *  *  S  R  *  N  V  K  N  W  F  C  R  *  C  R  I  Y  F  R :   Q  G  R  R  C  K  P  S  S  N  S  S  F  Q  C  H  F  A  S  L  G  E  A   : Y  C  F  *  V  S  E  T  R  *  E  N  G  *  P  C  W  *  *  E  N  E  G  Q  *  K  C  E  A  Y  Y  Y  S  M  L  *  F  C  K  T  S  A  Y  S  *  Y  H  S  V  L  R  Q  :  W  R  T  Y  N  Y  F  Y  *  D  K  G  A  G  F  R  A  S  W  L  T  A  W  G  K  C  F  A  W  G  D  T  T  E  P  A  *   : G  Y  T  *  R  I  Q  I  R  Q  I  H  D  I  S  G  H  K  C  G  S  P  W  I  G  Y  R  *  C  S  V  N  Y  P   : V  R  S  H  *  *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C  C  M  F  L  L  S  Y  L  F  S  L  G  G  K  P  P  Y  L  T  V  D  Y  L  V  S  C  F  P  G  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G  C  G  S  A  A  S  F  A  R  E  R  E  A  K  R  W  K  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  Q  M  V  R  N  G  D  I  I  F  L  I  A  D  N  T  R  V  C  P  R  L  R  S  K  F  W  Y  S  E  E  N  V  W  D  F  S  K  V  S  S  V  L  I  L  L  I  Y  I  G  F  S  S  L  Y  P  A  S  L  C  F  S  L  V  S  F  L  V  V  F  F  H  V  L  L  Y  F  W  L  D  T  *  K  V  I  I  Y  F  V  W  Y  C  Y  L  K  K  S  Y  S  I  Q  V  Q  F  T  I  C  L  V  T  H  L  K   </second_frame>
            <third_frame>   L  L  R  L  T  A  E  Y  T  V  F  G  R  R  A  I  P  P  T  N  K  V  I  M  P  A  L  V  V  T  E  E  T  M  A  S  E  L  S  K  K  K  M  K  K  T  P  K  T  D  I  E  T  P  T  D  K  K  T  K  E  K  K  S  K  K  S  K  I  E  S  G  S  D  S  E  D  A  K  R  S  K  K  K  E  K  K  R  K  A  L  D  L  D  G  E  K  S  D  T  S  S  E  I  C  E  P  V  D  L  K  K  N  K  K  A  K  F  D  D  E  Q  V  M  V  E  K  K  V  E  D  P  N  A  L  S  N  F  R  I  S  K  P  L  K  E  A  L  N  S  K  G  I  E  A  L  F  P  I  Q  A  M  T  F  D  D  I  L  D  G  C  D  L  V  G  R  A  R  T  G  Q  :  G  K  T  L  A  F  V  L  P  I  L  E  S  L  T  N  G  P  T  K  A  L  R  K  T  G  Y  G  K  A  P  S  V  L  V  L  L  P  T  R  E  L  A  L  Q  :  V  F  A  D  F  E  V  Y  G  R  A  V  G  L  T  S  C  C  L  Y  G  N  S  P  M  G  A  Q  Q  A  Q  L  K  R  G  V  D  I  V  V  G  T  P  G  R  V  K  :  D  H  I  E  R  G  N  I  D  F  G  S  L  K  F  R  V  L  D  E  V  D  E  M  L  K  I  G  F  V  D  D  V  E  F  I  L   : G  K  V  E  D  A  S  L  V  Q  T  V  L  F  S  A  T  L  P  V  W  V  K  H  :  I  A  S  K  F  L  K  P  D  K  K  T  A  D  L  V  G  N  E  K  M  K  A  S  K  N  V  R  H  I  I  I  P  C  S  S  S  A  R  P  Q  L  I  P  D  I  I  R  C  Y  G  S :   G  G  R  T  I  I  F  T  E  T  R  A  L  A  S  E  L  A  G  L  L  P  G  A  S  A  L  H  G  E  I  Q  Q  N  Q  R  E  :  A  T  L  K  G  F  R  S  G  K  F  M  T  L  V  A  T  N  V  A  A  R  G  L  D  I  D  D  V  Q  L  I  I  Q  :  C  E  A  T  S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  V  C  F  C  C  L  I  Y  S  L  W  E  A  N  L  L  I  L  L  L  T  I  L  C  L  A  F  Q  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  V  E  A  L  P  P  L  Q  E  R  E  K  P  R  G  G  R  F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R  R  W  *  G  M  A  T  *  F  F  *  *  L  T  I  Q  E  F  V  Q  G  C  V  Q  N  F  G  I  V  K  K  M  Y  G  T  S  V  R  F  L  L  Y  *  F  Y  *  F  I  *  V  S  P  P  C  T  L  L  H  Y  A  F  R  *  L  A  F  L  *  C  S  S  M  F  Y  Y  I  F  G  *  T  L  E  K  L  L  F  I  L  Y  G  I  V  T  *  R  N  H  I  Q  F  K  F  N  L  L  Y  V  W  L  H  T  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82931" stop="83473"/>
                    <exon start="84788" stop="84922"/>
                    <exon start="85020" stop="85160"/>
                    <exon start="85241" stop="85352"/>
                    <exon start="85557" stop="85627"/>
                    <exon start="85851" stop="86005"/>
                    <exon start="86098" stop="86209"/>
                    <exon start="86438" stop="86539"/>
                    <exon start="86630" stop="86690"/>
                    <exon start="86778" stop="86946"/>
                    <exon start="87019" stop="87294"/>
                    <exon start="88098" stop="88231"/>
                    <exon start="88445" stop="88638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2202</number_coding_nucleotides>
                  <number_encoded_amino_acids>734</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRLTAEYTVFGRRAIPPTNKVIMPALVVTEETMASELSKKKMKKTPKTDIETPTDKKTKEKKSKKSKIESGSDSEDAKRSKKKEKKRKALDLDGEKSDTSSEICEPVDLKKNKKAKFDDEQVMVEKKVEDPNALSNFRISKPLKEALNSKGIEALFPIQAMTFDDILDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKALRKTGYGKAPSVLVLLPTRELALQVFADFEVYGRAVGLTSCCLYGNSPMGAQQAQLKRGVDIVVGTPGRVKDHIERGNIDFGSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASLVQTVLFSATLPVWVKHIASKFLKPDKKTADLVGNEKMKASKNVRHIIIPCSSSARPQLIPDIIRCYGSGGRTIIFTETRALASELAGLLPGASALHGEIQQNQREATLKGFRSGKFMTLVATNVAARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAVCFCCLIYSLWEANLLILLLTILCLAFQGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVVEALPPLQEREKPRGGRFGGGGRGGGFGNRRGGGGFSGGRGGRGNGNFGRRW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88614" stop="88874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQLWSQMVRNGDIIFLIADNTRVCPRLRSKFWYSEENVWDFSKVSSVLILLIYIGFSSLYPASLCFSLVSFLVVFFHVLLYFWLDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="82929" e_stop="83473"/>
            <exon e_start="84788" e_stop="84922"/>
            <exon e_start="85020" e_stop="85160"/>
            <exon e_start="85241" e_stop="85352"/>
            <exon e_start="85557" e_stop="85627"/>
            <exon e_start="85851" e_stop="86005"/>
            <exon e_start="86098" e_stop="86209"/>
            <exon e_start="86438" e_stop="86539"/>
            <exon e_start="86630" e_stop="86690"/>
            <exon e_start="86778" e_stop="86946"/>
            <exon e_start="87019" e_stop="87115"/>
            <exon e_start="87200" e_stop="87294"/>
            <exon e_start="88098" e_stop="88231"/>
            <exon e_start="88445" e_stop="88479"/>
            <exon e_start="88530" e_stop="88969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82929" e_stop="83473" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83474" i_stop="84787" i_length="1314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84788" e_stop="84922" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84923" i_stop="85019" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85020" e_stop="85160" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="85161" i_stop="85240" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85241" e_stop="85352" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85353" i_stop="85556" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85557" e_stop="85627" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85628" i_stop="85850" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85851" e_stop="86005" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="86006" i_stop="86097" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86098" e_stop="86209" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.917">
            <gDNA_intron_boundary i_start="86210" i_stop="86437" i_length="228"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86438" e_stop="86539" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86540" i_stop="86629" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="86630" e_stop="86690" e_length="61"/>
          </exon>
          <intron i_serial="9" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86691" i_stop="86777" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="86778" e_stop="86946" e_length="169"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86947" i_stop="87018" i_length="72"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="87019" e_stop="87115" e_length="97"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="87116" i_stop="87199" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="87200" e_stop="87294" e_length="95"/>
          </exon>
          <intron i_serial="12" don_prob="0.969" acc_prob="0.908">
            <gDNA_intron_boundary i_start="87295" i_stop="88097" i_length="803"/>
          </intron>
          <exon e_serial="13" e_score="0.993">
            <gDNA_exon_boundary e_start="88098" e_stop="88231" e_length="134"/>
          </exon>
          <intron i_serial="13" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88232" i_stop="88444" i_length="213"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="88445" e_stop="88479" e_length="35"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88480" i_stop="88529" i_length="50"/>
          </intron>
          <exon e_serial="15" e_score="0.961">
            <gDNA_exon_boundary e_start="88530" e_stop="88969" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82929" stop="83471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82930" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82940" stop="83444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82943" stop="83473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82944" stop="83366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82950" stop="83327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82953" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82968" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83288" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83314" stop="83473"/>
              <exon start="84788" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84914" stop="84922"/>
              <exon start="85020" stop="85160"/>
              <exon start="85241" stop="85349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85290" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85293" stop="85352"/>
              <exon start="85557" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85627"/>
              <exon start="85851" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85926" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85971" stop="86005"/>
              <exon start="86098" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86189" stop="86209"/>
              <exon start="86438" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86485" stop="86539"/>
              <exon start="86630" stop="86690"/>
              <exon start="86778" stop="86946"/>
              <exon start="87019" stop="87115"/>
              <exon start="87200" stop="87294"/>
              <exon start="88098" stop="88231"/>
              <exon start="88445" stop="88479"/>
              <exon start="88530" stop="88684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88548" stop="88918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88557" stop="88828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88579" stop="88943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88598" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88600" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCCTACAAACAAAGTCATCATGCCTGCACTTGTTGTAACTGAAGAAACAATGGCCTCCGAGCTATCCAAGAAAAAAATGAAGAAGACACCCAAAACTGATATTGAAACTCCTACTGATAAGAAAACCAAAGAGAAAAAGTCAAAAAAATCCAAGATTGAGTCTGGGTCTGATTCAGAGGACGCTAAAAGGAGTAAAAAGAAAGAGAAAAAGAGAAAAGCTTTGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCCGTAGATTTGAAGAAGAATAAAAAGGCTAAATTCGACGACGAACAAGTGATGGTTGAGAAGAAAGTCGAGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTAAGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTGGTTGGTCGAGCTCGTACTGGGCAG : GGTAAAACGCTGGCCTTTGTTTTACCCATATTGGAGTCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTCAG : GTGTTTGCTGACTTTGAAGTCTATGGCCGGGCTGTTGGGCTCACTTCATGCTGTTTGTATGGAAATTCTCCTATGGGGGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAAGGGTTAAG : GACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTGAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAG : GCAAGGTCGAAGATGCAAGCCTAGTTCAAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCAT : ATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATATCATTCGGTGCTACGGCAG : TGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAG : GCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCACAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAG : TGCGAAGCCACTAGTGACGTGGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCTG : GAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAGAATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGGTATTTCTGATAG : TGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGAAAGCTCTTGCCAAGGCTGCT : GGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTC : CTTTGTCTATAGTTTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAG : GCCAAAAAACTGCACATGGGGTAAATATAGAGGTT : ATTTGGAGGTGGTGGCCGTGGCGGCGGCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTTCAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTTTCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAAATCATATTCAATTCAAGTTCAATTTACTATATGTTTGGTTACACACTTAAAAAG</gDNA_template>
            <first_frame> C  F  C  A  *  L  Q  N  T  P  F  S  A  G  E  Q  F  P  L  Q  T  K  S  S  C  L  H  L  L  *  L  K  K  Q  W  P  P  S  Y  P  R  K  K  *  R  R  H  P  K  L  I  L  K  L  L  L  I  R  K  P  K  R  K  S  Q  K  N  P  R  L  S  L  G  L  I  Q  R  T  L  K  G  V  K  R  K  R  K  R  E  K  L  W  T  W  M  V  R  R  V  I  R  A  Q  R  Y  A  S  P  *  I  *  R  R  I  K  R  L  N  S  T  T  N  K  *  W  L  R  R  K  S  R  I  L  M  L  C  L  I  L  G  F  Q  S  L  *  K  R  L  *  I  L  R  E  *  K  H  F  F  L  F  K  L  *  L  L  M  I  F  L  M  D  V  I  W  L  V  E  L  V  L  G  R :   V  K  R  W  P  L  F  Y  P  Y  W  S  P  *  R  M  V  L  L  K  H  Y  E  K  Q  G  M  G  R  L  L  V  F  W  C  F  Y  L  L  G  N  W  H  F  R :   C  L  L  T  L  K  S  M  A  G  L  L  G  S  L  H  A  V  C  M  E  I  L  L  W  G  H  N  R  L  N  *  K  E  E  L  T  L  *  W  V  L  L  E  G  L  R :   T  T  L  K  G  E  I  L  I  S  G  L  *  S  S  V  F  L  M  K  S  M  K  C  *  K  L  V  L  *  M  M  S  N  L  F  *  :  A  R  S  K  M  Q  A  *  F  K  Q  F  F  S  V  P  L  C  Q  S  G  *  S  I :   L  L  L  S  F  *  N  Q  I  R  K  R  L  T  L  L  V  M  R  K  *  R  P  V  K  M  *  G  I  L  L  F  H  A  L  V  L  Q  D  L  S  L  F  L  I  S  F  G  A  T  A   : V  E  D  V  Q  L  F  L  L  R  Q  G  R  W  L  Q  S  *  L  A  Y  C  L  G  Q  V  L  C  M  G  R  Y  N  R  T  S  V  R :   L  H  L  K  D  S  D  Q  A  N  S  *  H  *  W  P  Q  M  W  Q  P  V  D  W  I  S  M  M  F  S  *  L  S  S :   A  K  P  L  V  T  W  K  H  T  F  I  D  L  E  G  Q  D  G  L  :  E  R  V  A  L  L  *  C  C  M  I  Q  G  S  Q  T  F  L  E  S  K  K  N  L  V  *  P  L  S  I  C  L  L  L  S  Q  L  M  L  P  R  Q  L  G  K  K  L  L  I  *  L  R  V  F  L  I   : V  S  Y  L  Y  L  R  L  L  Q  R  S  F  *  I  L  L  T  Y  H  Q  Q  N  Y  L  R  K  L  L  P  R  L  L :   A  I  L  R  S  R  L  D  R  F  L  L  L  W  R  T  V  L  L  C  F  S  S  V  G  D  P  S  S  H  L   : P  L  S  I  V  S  *  G  G  S  C  L  R  R  R  L  N  Q  S  M  V  L  L  *  Q  L  M  E  R  G  Q  F  L  M  L  L  L  S  T  W  M  N  F  S  Q  :  A  K  K  L  H  M  G  *  I  *  R  L :   F  G  G  G  G  R  G  G  G  F  G  N  R  R  G  G  G  G  F  S  G  G  R  G  G  R  G  N  G  N  F  G  R  R  W  *  G  M  A  T  *  F  F  *  *  L  T  I  Q  E  F  V  Q  G  C  V  Q  N  F  G  I  V  K  K  M  Y  G  T  S  V  R  F  L  L  Y  *  F  Y  *  F  I  *  V  S  P  P  C  T  L  L  H  Y  A  F  R  *  L  A  F  L  *  C  S  S  M  F  Y  Y  I  F  G  *  T  L  E  K  L  L  F  I  L  Y  G  I  V  T  *  R  N  H  I  Q  F  K  F  N  L  L  Y  V  W  L  H  T  *  K  </first_frame>
            <second_frame>  A  S  A  P  N  C  R  I  H  R  F  R  Q  E  S  N  S  P  Y  K  Q  S  H  H  A  C  T  C  C  N  *  R  N  N  G  L  R  A  I  Q  E  K  N  E  E  D  T  Q  N  *  Y  *  N  S  Y  *  *  E  N  Q  R  E  K  V  K  K  I  Q  D  *  V  W  V  *  F  R  G  R  *  K  E  *  K  E  R  E  K  E  K  S  F  G  L  G  W  *  E  E  *  Y  E  L  R  D  M  R  A  R  R  F  E  E  E  *  K  G  *  I  R  R  R  T  S  D  G  *  E  E  S  R  G  S  *  C  F  V  *  F  *  D  F  K  A  F  K  R  G  F  E  F  *  G  N  R  S  T  F  S  Y  S  S  Y  D  F  *  *  Y  S  *  W  M  *  F  G  W  S  S  S  Y  W  A   : G  *  N  A  G  L  C  F  T  H  I  G  V  P  N  E  W  S  Y  *  S  I  T  K  N  R  V  W  E  G  S  *  C  S  G  A  F  T  Y  *  G  I  G  T  S   : G  V  C  *  L  *  S  L  W  P  G  C  W  A  H  F  M  L  F  V  W  K  F  S  Y  G  G  T  T  G  S  T  K  K  R  S  *  H  C  S  G  Y  S  W  K  G  *   : G  P  H  *  K  G  K  Y  *  F  R  V  F  E  V  P  C  S  *  *  S  R  *  N  V  K  N  W  F  C  R  *  C  R  I  Y  F  R :   Q  G  R  R  C  K  P  S  S  N  S  S  F  Q  C  H  F  A  S  L  G  E  A   : Y  C  F  *  V  S  E  T  R  *  E  N  G  *  P  C  W  *  *  E  N  E  G  Q  *  K  C  E  A  Y  Y  Y  S  M  L  *  F  C  K  T  S  A  Y  S  *  Y  H  S  V  L  R  Q  :  W  R  T  Y  N  Y  F  Y  *  D  K  G  A  G  F  R  A  S  W  L  T  A  W  G  K  C  F  A  W  G  D  T  T  E  P  A  *   : G  Y  T  *  R  I  Q  I  R  Q  I  H  D  I  S  G  H  K  C  G  S  P  W  I  G  Y  R  *  C  S  V  N  Y  P   : V  R  S  H  *  *  R  G  S  I  H  S  S  I  W  K  D  R  T  G  W :   K  E  W  R  C  C  N  A  V  *  S  K  E  V  K  H  F  *  N  R  K  R  I  W  C  D  L  *  A  F  V  C  S  S  A  S  *  C  C  Q  G  S  W  E  R  S  C  *  Y  N  C  G  Y  F  *  *  :  C  H  T  C  I  *  G  C  C  R  G  A  S  E  Y  F  *  P  I  T  S  R  I  T  C  E  S  S  C  Q  G  C   : W  L  F  *  D  Q  D  S  I  A  S  Y  F  Y  G  E  L  C  Y  S  A  S  R  V  W  E  T  H  L  L  T  F  :  L  C  L  *  F  P  E  E  V  L  A  *  G  E  G  *  I  N  Q  W  S  Y  F  D  S  *  W  K  G  G  S  F  *  C  C  C  *  A  L  G  *  I  S  L  R :   P  K  N  C  T  W  G  K  Y  R  G   : Y  L  E  V  V  A  V  A  A  A  S  V  T  E  E  A  E  V  A  F  L  E  E  E  G  G  E  V  M  A  T  L  V  A  D  G  K  E  W  R  H  N  F  F  D  S  *  Q  Y  K  S  L  S  K  A  A  F  K  I  L  V  *  *  R  K  C  M  G  L  Q  *  G  F  F  C  I  N  F  T  N  L  Y  R  F  L  L  P  V  P  C  F  I  M  L  F  A  S  *  L  S  C  S  V  L  P  C  F  T  I  F  L  V  R  H  L  K  S  Y  Y  L  F  C  M  V  L  L  P  E  E  I  I  F  N  S  S  S  I  Y  Y  M  F  G  Y  T  L  K  K </second_frame>
            <third_frame>   L  L  R  L  T  A  E  Y  T  V  F  G  R  R  A  I  P  P  T  N  K  V  I  M  P  A  L  V  V  T  E  E  T  M  A  S  E  L  S  K  K  K  M  K  K  T  P  K  T  D  I  E  T  P  T  D  K  K  T  K  E  K  K  S  K  K  S  K  I  E  S  G  S  D  S  E  D  A  K  R  S  K  K  K  E  K  K  R  K  A  L  D  L  D  G  E  K  S  D  T  S  S  E  I  C  E  P  V  D  L  K  K  N  K  K  A  K  F  D  D  E  Q  V  M  V  E  K  K  V  E  D  P  N  A  L  S  N  F  R  I  S  K  P  L  K  E  A  L  N  S  K  G  I  E  A  L  F  P  I  Q  A  M  T  F  D  D  I  L  D  G  C  D  L  V  G  R  A  R  T  G  Q  :  G  K  T  L  A  F  V  L  P  I  L  E  S  L  T  N  G  P  T  K  A  L  R  K  T  G  Y  G  K  A  P  S  V  L  V  L  L  P  T  R  E  L  A  L  Q  :  V  F  A  D  F  E  V  Y  G  R  A  V  G  L  T  S  C  C  L  Y  G  N  S  P  M  G  A  Q  Q  A  Q  L  K  R  G  V  D  I  V  V  G  T  P  G  R  V  K  :  D  H  I  E  R  G  N  I  D  F  G  S  L  K  F  R  V  L  D  E  V  D  E  M  L  K  I  G  F  V  D  D  V  E  F  I  L   : G  K  V  E  D  A  S  L  V  Q  T  V  L  F  S  A  T  L  P  V  W  V  K  H  :  I  A  S  K  F  L  K  P  D  K  K  T  A  D  L  V  G  N  E  K  M  K  A  S  K  N  V  R  H  I  I  I  P  C  S  S  S  A  R  P  Q  L  I  P  D  I  I  R  C  Y  G  S :   G  G  R  T  I  I  F  T  E  T  R  A  L  A  S  E  L  A  G  L  L  P  G  A  S  A  L  H  G  E  I  Q  Q  N  Q  R  E  :  A  T  L  K  G  F  R  S  G  K  F  M  T  L  V  A  T  N  V  A  A  R  G  L  D  I  D  D  V  Q  L  I  I  Q  :  C  E  A  T  S  D  V  E  A  Y  I  H  R  S  G  R  T  G  R  A   : G  K  S  G  V  A  V  M  L  Y  D  P  R  K  S  N  I  S  R  I  E  K  E  S  G  V  T  F  E  H  L  S  A  P  Q  P  A  D  V  A  K  A  A  G  K  E  A  A  D  I  I  A  G  I  S  D  S :   V  I  P  V  F  K  A  A  A  E  E  L  L  N  T  S  D  L  S  P  A  E  L  L  A  K  A  L  A  K  A  A  :  G  Y  S  E  I  K  T  R  S  L  L  T  S  M  E  N  C  V  T  L  L  L  E  C  G  R  P  I  F  S  P  S :   F  V  Y  S  F  L  R  R  F  L  P  E  E  K  V  E  S  I  N  G  L  T  L  T  A  D  G  K  G  A  V  F  D  V  A  A  E  H  L  D  E  F  L  S   : G  Q  K  T  A  H  G  V  N  I  E  V  :  I  W  R  W  W  P  W  R  R  L  R  *  Q  K  R  R  R  W  L  F  W  R  K  R  G  E  R  *  W  Q  L  W  S  Q  M  V  R  N  G  D  I  I  F  L  I  A  D  N  T  R  V  C  P  R  L  R  S  K  F  W  Y  S  E  E  N  V  W  D  F  S  K  V  S  S  V  L  I  L  L  I  Y  I  G  F  S  S  L  Y  P  A  S  L  C  F  S  L  V  S  F  L  V  V  F  F  H  V  L  L  Y  F  W  L  D  T  *  K  V  I  I  Y  F  V  W  Y  C  Y  L  K  K  S  Y  S  I  Q  V  Q  F  T  I  C  L  V  T  H  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82931" stop="83473"/>
                    <exon start="84788" stop="84922"/>
                    <exon start="85020" stop="85160"/>
                    <exon start="85241" stop="85352"/>
                    <exon start="85557" stop="85627"/>
                    <exon start="85851" stop="86005"/>
                    <exon start="86098" stop="86209"/>
                    <exon start="86438" stop="86539"/>
                    <exon start="86630" stop="86690"/>
                    <exon start="86778" stop="86946"/>
                    <exon start="87019" stop="87115"/>
                    <exon start="87200" stop="87294"/>
                    <exon start="88098" stop="88231"/>
                    <exon start="88445" stop="88479"/>
                    <exon start="88530" stop="88565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1995</number_coding_nucleotides>
                  <number_encoded_amino_acids>665</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRLTAEYTVFGRRAIPPTNKVIMPALVVTEETMASELSKKKMKKTPKTDIETPTDKKTKEKKSKKSKIESGSDSEDAKRSKKKEKKRKALDLDGEKSDTSSEICEPVDLKKNKKAKFDDEQVMVEKKVEDPNALSNFRISKPLKEALNSKGIEALFPIQAMTFDDILDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKALRKTGYGKAPSVLVLLPTRELALQVFADFEVYGRAVGLTSCCLYGNSPMGAQQAQLKRGVDIVVGTPGRVKDHIERGNIDFGSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASLVQTVLFSATLPVWVKHIASKFLKPDKKTADLVGNEKMKASKNVRHIIIPCSSSARPQLIPDIIRCYGSGGRTIIFTETRALASELAGLLPGASALHGEIQQNQREATLKGFRSGKFMTLVATNVAARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGVTFEHLSAPQPADVAKAAGKEAADIIAGISDSVIPVFKAAAEELLNTSDLSPAELLAKALAKAAGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSFLRRFLPEEKVESINGLTLTADGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVIWRWWPWRRLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88614" stop="88874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQLWSQMVRNGDIIFLIADNTRVCPRLRSKFWYSEENVWDFSKVSSVLILLIYIGFSSLYPASLCFSLVSFLVVFFHVLLYFWLDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="84325" PGL_stop="83149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84325" e_stop="84307"/>
            <exon e_start="84246" e_stop="84185"/>
            <exon e_start="83570" e_stop="83149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.140" e_score="0.737"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.435"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.737">
            <gDNA_exon_boundary e_start="84325" e_stop="84307" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.140">
            <gDNA_intron_boundary i_start="84306" i_stop="84247" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="0.435">
            <gDNA_exon_boundary e_start="84246" e_stop="84185" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84184" i_stop="83571" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83570" e_stop="83149" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84325" stop="84307"/>
              <exon start="84246" stop="84185"/>
              <exon start="83570" stop="83149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214963" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGCAGAAATTTCAAAA : GCGGCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCTGTCGCCGTTTCT : TGTTAAGTCAGGTTACTCCATTCAAACTCACCCAATATTTACATAATTAGAGCACGGCAAGTAAATGATAAATATGCATGATAGAATCAAGAGCTACCTGCCCAGTACGAGCTCGACCAACCAAATCACATCCATCAAGAATATCATCAAAAGTCATAGCTTGAATAGGAAAAAGTGCTTCTATTCCCTTAGAATTCAAAGCCTCTTTTAAAGGCTTTGAAATCCTAAAATTAGACAAAGCATTAGGATCCTCGACTTTCTTCTCAACCATCACTTGTTCGTCGTCGAATTTAGCCTTTTTATTCTTCTTCAAATCTACGGGCTCGCATATCTCTGAGCTCGTATCACTCTTCTCACCATCCAAGTCCAAAGCTTTTCTCTTTTTCTCTTTCTTTTTACTCCTTTTAGCGTCCTCTGAATCA</gDNA_template>
            <first_frame> E  S  R  N  F  K   : S  G  A  V  S  V  A  V  S  V  A  V  S  V  A  V  S  V  A  V  S  :  C  *  V  R  L  L  H  S  N  S  P  N  I  Y  I  I  R  A  R  Q  V  N  D  K  Y  A  *  *  N  Q  E  L  P  A  Q  Y  E  L  D  Q  P  N  H  I  H  Q  E  Y  H  Q  K  S  *  L  E  *  E  K  V  L  L  F  P  *  N  S  K  P  L  L  K  A  L  K  S  *  N  *  T  K  H  *  D  P  R  L  S  S  Q  P  S  L  V  R  R  R  I  *  P  F  Y  S  S  S  N  L  R  A  R  I  S  L  S  S  Y  H  S  S  H  H  P  S  P  K  L  F  S  F  S  L  S  F  Y  S  F  *  R  P  L  N   </first_frame>
            <second_frame>  K  A  E  I  S  K  :  A  A  P  F  L  S  P  F  L  S  P  F  L  S  P  F  L  S  P  F  L :   V  K  S  G  Y  S  I  Q  T  H  P  I  F  T  *  L  E  H  G  K  *  M  I  N  M  H  D  R  I  K  S  Y  L  P  S  T  S  S  T  N  Q  I  T  S  I  K  N  I  I  K  S  H  S  L  N  R  K  K  C  F  Y  S  L  R  I  Q  S  L  F  *  R  L  *  N  P  K  I  R  Q  S  I  R  I  L  D  F  L  L  N  H  H  L  F  V  V  E  F  S  L  F  I  L  L  Q  I  Y  G  L  A  Y  L  *  A  R  I  T  L  L  T  I  Q  V  Q  S  F  S  L  F  L  F  L  F  T  P  F  S  V  L  *  I  </second_frame>
            <third_frame>   K  Q  K  F  Q  K :   R  R  R  F  C  R  R  F  C  R  R  F  C  R  R  F  C  R  R  F   : L  L  S  Q  V  T  P  F  K  L  T  Q  Y  L  H  N  *  S  T  A  S  K  *  *  I  C  M  I  E  S  R  A  T  C  P  V  R  A  R  P  T  K  S  H  P  S  R  I  S  S  K  V  I  A  *  I  G  K  S  A  S  I  P  L  E  F  K  A  S  F  K  G  F  E  I  L  K  L  D  K  A  L  G  S  S  T  F  F  S  T  I  T  C  S  S  S  N  L  A  F  L  F  F  F  K  S  T  G  S  H  I  S  E  L  V  S  L  F  S  P  S  K  S  K  A  F  L  F  F  S  F  F  L  L  L  L  A  S  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83406" stop="83149"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGKSASIPLEFKASFKGFEILKLDKALGSSTFFSTITCSSSNLAFLFFFKSTGSHISELVSLFSPSKSKAFLFFSFFLLLLASSES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="90959" PGL_stop="91611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90959" e_stop="91611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="90959" e_stop="91611" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90959" stop="91611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGCAAATGAAATCTGCAGTAAGAGCATATAGTCTTGCTATTAAAAAAGAATTTCTTTGTGATCAATCCAAAAGTAAAAGTTGGAAAGTTATTTGCAAGCGTCATGAGTTAGGGTGTGATTGGATGATTCGGTTTAGAGAGATTTCAAGCGGTATATGGAAGACAGGAAAAATGATTGAACCGCATACTTGTCTTACAGATAACTATAAGGAGGATCATTTCAATTTGAATGATAACATGATTGCCACTTCATTAATACCATATGTTATGCAAAATTCGGACATAAATATTAAGATGATCCGTGAAATTATCAAAGGAAAGCATCACTATACTCCTAGTTACAGAAAAGCACAAAAAGGTCGAAGAAAAGTATTTCGAATGGTTTATGGTGATTTTGAAAGTTCATTTAAGGCATTACCTCGATACATGGCTGCACTACAATTATTCAATCCAAGCACTATTATTGAGTGGGAGCATCATTCTACAACAATGCAAGGTGAGCAAATTTTTAAATTTCTTTTTTGGGCTTTTAAACAGAGCATTGATGGTTTCAAAAGTTGTAGGCCGGTCATTTCTATCGACGGCACACATCTTTATGGTTTGTATGATATCAAATTGTTAATTGCGGTTGGAATTGATGCGAATGGAAAT</gDNA_template>
            <first_frame> R  C  K  *  N  L  Q  *  E  H  I  V  L  L  L  K  K  N  F  F  V  I  N  P  K  V  K  V  G  K  L  F  A  S  V  M  S  *  G  V  I  G  *  F  G  L  E  R  F  Q  A  V  Y  G  R  Q  E  K  *  L  N  R  I  L  V  L  Q  I  T  I  R  R  I  I  S  I  *  M  I  T  *  L  P  L  H  *  Y  H  M  L  C  K  I  R  T  *  I  L  R  *  S  V  K  L  S  K  E  S  I  T  I  L  L  V  T  E  K  H  K  K  V  E  E  K  Y  F  E  W  F  M  V  I  L  K  V  H  L  R  H  Y  L  D  T  W  L  H  Y  N  Y  S  I  Q  A  L  L  L  S  G  S  I  I  L  Q  Q  C  K  V  S  K  F  L  N  F  F  F  G  L  L  N  R  A  L  M  V  S  K  V  V  G  R  S  F  L  S  T  A  H  I  F  M  V  C  M  I  S  N  C  *  L  R  L  E  L  M  R  M  E   </first_frame>
            <second_frame>  D  A  N  E  I  C  S  K  S  I  *  S  C  Y  *  K  R  I  S  L  *  S  I  Q  K  *  K  L  E  S  Y  L  Q  A  S  *  V  R  V  *  L  D  D  S  V  *  R  D  F  K  R  Y  M  E  D  R  K  N  D  *  T  A  Y  L  S  Y  R  *  L  *  G  G  S  F  Q  F  E  *  *  H  D  C  H  F  I  N  T  I  C  Y  A  K  F  G  H  K  Y  *  D  D  P  *  N  Y  Q  R  K  A  S  L  Y  S  *  L  Q  K  S  T  K  R  S  K  K  S  I  S  N  G  L  W  *  F  *  K  F  I  *  G  I  T  S  I  H  G  C  T  T  I  I  Q  S  K  H  Y  Y  *  V  G  A  S  F  Y  N  N  A  R  *  A  N  F  *  I  S  F  L  G  F  *  T  E  H  *  W  F  Q  K  L  *  A  G  H  F  Y  R  R  H  T  S  L  W  F  V  *  Y  Q  I  V  N  C  G  W  N  *  C  E  W  K  </second_frame>
            <third_frame>   M  Q  M  K  S  A  V  R  A  Y  S  L  A  I  K  K  E  F  L  C  D  Q  S  K  S  K  S  W  K  V  I  C  K  R  H  E  L  G  C  D  W  M  I  R  F  R  E  I  S  S  G  I  W  K  T  G  K  M  I  E  P  H  T  C  L  T  D  N  Y  K  E  D  H  F  N  L  N  D  N  M  I  A  T  S  L  I  P  Y  V  M  Q  N  S  D  I  N  I  K  M  I  R  E  I  I  K  G  K  H  H  Y  T  P  S  Y  R  K  A  Q  K  G  R  R  K  V  F  R  M  V  Y  G  D  F  E  S  S  F  K  A  L  P  R  Y  M  A  A  L  Q  L  F  N  P  S  T  I  I  E  W  E  H  H  S  T  T  M  Q  G  E  Q  I  F  K  F  L  F  W  A  F  K  Q  S  I  D  G  F  K  S  C  R  P  V  I  S  I  D  G  T  H  L  Y  G  L  Y  D  I  K  L  L  I  A  V  G  I  D  A  N  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90961" stop="91611"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQMKSAVRAYSLAIKKEFLCDQSKSKSWKVICKRHELGCDWMIRFREISSGIWKTGKMIEPHTCLTDNYKEDHFNLNDNMIATSLIPYVMQNSDINIKMIREIIKGKHHYTPSYRKAQKGRRKVFRMVYGDFESSFKALPRYMAALQLFNPSTIIEWEHHSTTMQGEQIFKFLFWAFKQSIDGFKSCRPVISIDGTHLYGLYDIKLLIAVGIDANGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="96068" PGL_stop="92660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96068" e_stop="96014"/>
            <exon e_start="95884" e_stop="94271"/>
            <exon e_start="94189" e_stop="93662"/>
            <exon e_start="93561" e_stop="93238"/>
            <exon e_start="92713" e_stop="92660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="96068" e_stop="96014" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96013" i_stop="95885" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="95884" e_stop="94271" e_length="1614"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94270" i_stop="94190" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="94189" e_stop="93662" e_length="528"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93661" i_stop="93562" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="93561" e_stop="93238" e_length="324"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93237" i_stop="92714" i_length="524"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="92713" e_stop="92660" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96068" stop="96014"/>
              <exon start="95884" stop="95288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95354" stop="94700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95349" stop="94746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94976" stop="94655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94975" stop="94342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94893" stop="94317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94810" stop="94271"/>
              <exon start="94189" stop="94120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94572" stop="94271"/>
              <exon start="94189" stop="94046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94171" stop="93662"/>
              <exon start="93561" stop="93374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94170" stop="93662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94062" stop="93662"/>
              <exon start="93561" stop="93238"/>
              <exon start="92713" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTCAAAGCATTTTCTTTATAAG : ATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTTATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAGATGTTGCTTATATACGAGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGGCGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA : GCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT : GTAACTGCGTTTGATGATTCAAGATTTAATGCTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACAATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCTGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTGAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATGTTTGAACAAGTTT : ATTAACCTTAAAAACATATACAAAATATTTAAAATCGAGTAGGACATCGTGCCT</gDNA_template>
            <first_frame> N  S  C  Y  S  S  N  F  L  K  F  F  K  A  F  S  L  *   : D  M  D  P  S  N  L  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  Q  V  Y  H  R  S  E  G  I  W  N  G  S  I  K  E  E  R  C  C  L  Y  T  S  R  G  D  I  E  F  W  Q  H  L  K  Y  H  P  L  H  S  R  I  L  Q  Y  F  E  N  C  R  F  K  G  I  L  D  V  G  C  V  P  Y  D  S  G  L  I  S  A  L  I  E  R  W  R  P  E  T  H  T  F  H  M  R  T  G  E  A  T  I  T  L  Q  D  I  E  I  L  F  G  M  V  V  D  G  S  P  I  I  L  N  G  A  D  S  L  R  I  I  G  R  Q  E  M  I  F  Q  L  T  G  W  L  P  D  T  S  C  F  S  G  V  S  R  L  S  T  Y  K  L  I  E  Y  I  E  G  L  E  V  I  N  D  N  S  T  E  H  E  V  Q  Q  R  F  R  L  Y  L  L  W  L  C  G  G  S  I  F  P  D  K  S  N  N  K  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  S  A  A  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  V  Y  I  F  F  D  *  I  F  F  I  Y  *  *  Y  A  L  L  N  L  S  A  L  *  V  M  V  N  L  F  I  V  D  L  G  M  E  K  N  Y  S  P  A  T  I  A  K  A  S  K  N  Q  S  I  *  G  F  N  C  T  C  T  *  M  D  A  T  *  K  S  S  K  *  G  T  N  C  N  R  C  D  *  G  C  T  *  *  S  N  *  *  T  G  I  *  Y  Y  *  Y  L  I  L  F  I  F  Y  F  I  L  N  K  N  I  F  F  S  A  N  V  V  F  I  I  I  L  L  N  Y  F  F  I  V  Y  L  A  A  L  F  G  R  C  Y  *  W  I  A  *  V  V  S  V  R  T  T  C  L  D  G  T  G  A  T  D  L  W  N  L  S  *  V  A  H  G  *  S  C  C  E  T  V  R  L  F  T  T  Y  S  W  T  V  Y  P  I  F  R  I  S  F  *  A  *  *  T  I  K  N  K  T  R  R  Y  R  C  I  *  L  Y  T  I  F  M  G  T  T  S  K  S  Y  I  S  T  S  I  C  K  *  S  N  R  L  L  P  L  V  H  E  A  Y  P  H  G  H  W  K  S  T  T  C  C  T  K  R  V  S  T  H  G  R  K  T  *  G  I   : S  *  G  S  *  N  A  V  S  S  S  S  D  D  *  K  *  *  K  S  I  *  *  N  E  T  I  C  S  G  S  R  S  Y  F  N  G  V  N  E  C  G  L  S  G  N  A  I  E  L  *  S  *  L  Q  S  S  H  S  I  R  *  T  T  T  S  T  S  I  S  P  I  T  T  N  N  T  E  R  G  C  S  S  R  *  K  D  H  *  *  N  N  *  F  F  C  R  A  L  *  H  *  C  G  D  S  R  A  L  L  S  H  I  *  F  F  C  R  A  L  *  H  *  S  E  F  F  *  S  A  N  S  W  F  C  N  S  A  G  S  N  I  W  V  C  T  I  *  W  F  S  I  W  F  S  T  W  Y  A  *  I  S  D  T  *  F  S  I  W  W  K  I  E  F  F  E   : C  N  C  V  *  *  F  K  I  *  C  W  G  F  T  K  F  S  S  *  *  T  K  S  T  S  E  N  I  *  A  T  Q  I  N  *  M  W  N  R  Q  S  Q  S  K  *  G  R  F  *  K  *  R  *  K  *  R  *  E  *  R  C  R  R  F  *  F  R  R  I  I  F  F  M  H  L  Y  S  K  R  L  K  I  R  I  L  K  Y  V  N  F  V  V  S  C  K  F  E  Q  S  N  E  I  M  F  E  Q  V   : Y  *  P  *  K  H  I  Q  N  I  *  N  R  V  G  H  R  A  </first_frame>
            <second_frame>  I  L  V  I  L  Q  I  F  *  S  F  S  K  H  F  L  Y  K  :  I  W  I  H  Q  I  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  P  K  E  F  G  M  V  A  *  K  K  R  D  V  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  *  N  I  I  H  Y  I  L  A  S  F  N  I  L  K  I  V  D  L  K  E  F  L  M  L  D  V  C  R  M  T  P  D  *  F  L  L  *  L  K  G  G  V  R  K  L  I  L  F  T  C  E  L  A  R  L  P  *  L  Y  K  I  L  K  F  Y  S  E  W  *  *  M  V  V  L  *  F  *  M  E  L  I  L  *  G  L  *  V  D  K  K  *  F  F  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  Q  H  I  N  *  L  S  I  S  K  V  W  K  L  L  T  I  T  Q  L  S  M  K  F  N  K  D  L  D  Y  I  Y  Y  G  Y  V  V  D  Q  Y  F  R  I  N  L  I  I  R  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  D  R  P  H  Y  H  I  C  I  I  V  Y  A  V  R  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R  Y  T  Y  F  L  I  K  Y  F  L  Y  T  S  N  M  H  F  *  I  *  V  H  Y  K  *  W  *  I  Y  L  L  *  I  W  A  W  K  R  I  I  P  L  Q  P  L  P  K  P  L  R  T  N  Q  F  E  A  L  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  T  D  E  Q  V  F  N  I  I  S  I  L  Y  F  S  Y  F  I  L  F  *  I  R  I  Y  F  F  L  P  M  L  F  L  *  L  S  Y  L  I  I  F  L  *  F  I  W  Q  P  Y  S  E  D  V  I  N  G  L  P  E  W  C  R  S  G  Q  R  V  W  M  A  Q  V  P  L  I  Y  G  I  Y  R  E  W  H  M  V  D  R  V  V  R  Q  F  G  Y  L  Q  H  I  P  G  P  C  T  Q  F  S  E  Y  H  F  K  R  D  K  R  S  K  I  K  Q  E  D  I  D  A  F  N  Y  T  Q  Y  L  W  E  Q  R  Q  N  R  I  F  R  P  P  F  V  S  D  Q  I  D  Y  F  R  W  Y  M  R  H  T  R  M  V  I  G  N  P  Q  H  V  V  Q  K  G  Y  Q  H  M  A  G  R  H  E  A  L  :  A  R  G  H  E  M  Q  Y  R  R  A  R  M  I  E  N  D  E  N  Q  S  N  E  M  R  Q  Y  A  A  E  V  A  R  I  S  M  E  S  M  N  A  A  F  Q  G  T  R  L  S  F  D  H  D  Y  N  P  P  T  Q  Y  D  E  P  P  P  V  Q  V  S  R  R  S  R  Q  T  T  P  R  E  G  A  R  R  G  R  R  I  T  S  E  T  T  D  F  S  A  G  P  S  N  T  N  V  A  T  P  E  P  Y  Y  P  T  F  D  F  S  V  G  P  S  N  T  N  P  N  F  S  S  Q  Q  T  V  G  F  V  T  P  Q  V  P  I  S  G  F  A  Q  F  S  G  S  Q  Y  G  F  Q  H  G  M  R  E  F  P  I  H  N  S  P  F  G  G  R  L  N  F  S  N  :  V  T  A  F  D  D  S  R  F  N  A  G  A  S  Q  N  L  V  L  N  R  Q  N  P  P  R  R  T  S  R  L  H  K  S  T  R  C  G  T  G  S  H  N  Q  N  E  E  D  F  E  N  E  D  E  N  E  D  E  N  E  D  V  E  D  S  D  S  E  E  *  F  F  L  C  T  F  I  L  K  G  *  R  F  E  F  *  N  M  *  I  L  L  F  R  A  S  L  N  K  V  M  R  L  C  L  N  K  F  :  I  N  L  K  N  I  Y  K  I  F  K  I  E  *  D  I  V  P </second_frame>
            <third_frame>   F  L  L  F  F  K  F  S  K  V  F  Q  S  I  F  F  I  R :   Y  G  S  I  K  F  I  R  T  S  W  S  S  R  A  *  C  I  K  N  S  S  L  S  S  F  R  R  N  L  E  W  *  H  K  R  R  E  M  L  L  I  Y  E  S  W  *  Y  *  I  L  A  T  F  K  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  *  I  *  R  N  S  *  C  W  M  C  A  V  *  L  R  I  N  F  C  F  N  *  K  V  A  S  G  N  S  Y  F  S  H  A  N  W  R  G  Y  H  N  F  T  R  Y  *  N  F  I  R  N  G  S  R  W  *  S  Y  N  F  K  W  S  *  F  F  K  D  Y  R  *  T  R  N  D  F  S  I  N  R  M  V  T  R  Y  *  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  V  Y  R  R  F  G  S  Y  *  R  *  L  N  *  A  *  S  S  T  K  I  *  I  I  F  I  M  V  M  W  W  I  N  I  S  G  *  I  *  *  *  D  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  I  G  R  I  I  I  F  V  *  L  F  M  P  C  V  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A  G  I  H  I  F  *  L  N  I  F  Y  I  L  V  I  C  T  F  K  F  K  C  I  I  S  N  G  E  F  I  Y  C  R  F  G  H  G  K  E  L  F  P  C  N  H  C  Q  S  L  *  E  P  I  N  L  R  L  *  L  H  L  H  V  N  G  R  D  V  E  I  I  K  M  R  H  E  L  *  S  V  *  L  G  M  Y  L  I  I  *  L  M  N  R  Y  L  I  L  L  V  S  Y  T  F  H  I  L  F  Y  F  K  *  E  Y  I  F  F  C  Q  C  C  F  Y  N  Y  L  T  *  L  F  F  Y  S  L  F  G  S  L  I  R  K  M  L  L  M  D  C  L  S  G  V  G  Q  D  N  V  S  G  W  H  R  C  H  *  F  M  E  F  I  V  S  G  T  W  L  I  V  L  *  D  S  S  V  I  Y  N  I  F  L  D  R  V  P  N  F  P  N  I  I  L  S  V  I  N  D  Q  K  *  N  K  K  I  *  M  H  L  T  I  H  N  I  Y  G  N  N  V  K  I  V  Y  F  D  L  H  L  *  V  I  K  *  I  T  S  V  G  T  *  G  I  P  A  W  S  L  E  I  H  N  M  L  Y  K  K  G  I  N  T  W  Q  E  D  M  R  H  * :   L  G  V  M  K  C  S  I  V  E  L  G  *  L  K  M  M  K  I  N  L  M  K  *  D  N  M  Q  R  K  S  L  V  F  Q  W  S  Q  *  M  R  P  F  R  E  R  D  *  A  L  I  M  I  T  I  L  P  L  N  T  M  N  H  H  Q  Y  K  Y  L  A  D  H  D  K  Q  H  R  E  R  V  L  V  E  V  E  G  S  L  V  K  Q  L  I  F  L  Q  G  P  L  T  L  M  W  R  L  P  S  L  I  I  P  H  L  I  F  L  *  G  P  L  T  L  I  R  I  F  L  V  S  K  Q  L  V  L  *  L  R  R  F  Q  Y  L  G  L  H  N  L  V  V  L  N  M  V  F  N  M  V  C  V  N  F  R  Y  I  I  L  H  L  V  E  D  *  I  F  R  M :   *  L  R  L  M  I  Q  D  L  M  L  G  L  H  K  I  *  F  L  I  D  K  I  H  L  G  E  H  L  G  Y  T  N  Q  L  D  V  E  Q  A  V  T  I  K  M  R  K  I  L  K  M  K  M  K  M  K  M  R  M  K  M  *  K  I  L  I  Q  K  N  N  F  F  Y  A  P  L  F  *  K  A  E  D  S  N  F  E  I  C  K  F  C  C  F  V  Q  V  *  T  K  *  *  D  Y  V  *  T  S  L :   L  T  L  K  T  Y  T  K  Y  L  K  S  S  R  T  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94696" stop="94271"/>
                    <exon start="94189" stop="93662"/>
                    <exon start="93561" stop="93352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIWQPYSEDVINGLPEWCRSGQRVWMAQVPLIYGIYREWHMVDRVVRQFGYLQHIPGPCTQFSEYHFKRDKRSKIKQEDIDAFNYTQYLWEQRQNRIFRPPFVSDQIDYFRWYMRHTRMVIGNPQHVVQKGYQHMAGRHEALARGHEMQYRRARMIENDENQSNEMRQYAAEVARISMESMNAAFQGTRLSFDHDYNPPTQYDEPPPVQVSRRSRQTTPREGARRGRRITSETTDFSAGPSNTNVATPEPYYPTFDFSVGPSNTNPNFSSQQTVGFVTPQVPISGFAQFSGSQYGFQHGMREFPIHNSPFGGRLNFSNVTAFDDSRFNAGASQNLVLNRQNPPRRTSRLHKSTRCGTGSHNQNEEDFENEDENEDENEDVEDSDSEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96014" stop="95070"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMDPSNLYVHPGPVEHDVLKIQVYHRSEGIWNGSIKEERCCLYTSRGDIEFWQHLKYHPLHSRILQYFENCRFKGILDVGCVPYDSGLISALIERWRPETHTFHMRTGEATITLQDIEILFGMVVDGSPIILNGADSLRIIGRQEMIFQLTGWLPDTSCFSGVSRLSTYKLIEYIEGLEVINDNSTEHEVQQRFRLYLLWLCGGSIFPDKSNNKINLDILIDMRNLDLMSTQAWGSAALSYLYNCLCRASMKKSNEVCGFLSLVQVYIFFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94993" stop="94763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWAWKRIIPLQPLPKPLRTNQFEALTALARKWTRRRNHQNEARTVIGVIRDVLDNLTDEQVFNIISILYFSYFILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96068" e_stop="96014"/>
            <exon e_start="95884" e_stop="95091"/>
            <exon e_start="94993" e_stop="94271"/>
            <exon e_start="94189" e_stop="93662"/>
            <exon e_start="93561" e_stop="93238"/>
            <exon e_start="92713" e_stop="92660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="0.993"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="96068" e_stop="96014" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96013" i_stop="95885" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="95884" e_stop="95091" e_length="794"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="95090" i_stop="94994" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="94993" e_stop="94271" e_length="723"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94270" i_stop="94190" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="94189" e_stop="93662" e_length="528"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93661" i_stop="93562" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="93561" e_stop="93238" e_length="324"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93237" i_stop="92714" i_length="524"/>
          </intron>
          <exon e_serial="6" e_score="0.556">
            <gDNA_exon_boundary e_start="92713" e_stop="92660" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96068" stop="96014"/>
              <exon start="95884" stop="95288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95344" stop="95091"/>
              <exon start="94993" stop="94958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95144" stop="95091"/>
              <exon start="94993" stop="94474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94976" stop="94655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94975" stop="94342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94893" stop="94317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94810" stop="94271"/>
              <exon start="94189" stop="94120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94572" stop="94271"/>
              <exon start="94189" stop="94046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94171" stop="93662"/>
              <exon start="93561" stop="93374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94170" stop="93662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94062" stop="93662"/>
              <exon start="93561" stop="93238"/>
              <exon start="92713" stop="92660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTCAAAGCATTTTCTTTATAAG : ATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTTATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAGATGTTGCTTATATACGAGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGGCGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGCCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAG : ATTTGGGCATGGAAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTGATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAATAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA : GCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTTCAGGGAACGCGATTGAGCTTTGATCATGATTACAATCCTCCCACTCAATACGATGAACCACCACCAGTACAAGTATCTCGCCGATCACGACAAACAACACCGAGAGAGGGTGCTCGTCGAGGTAGAAGGATCACTAGTGAAACAACTGATTTTTCTGCAGGGCCCTCTAACACTAATGTGGCGACTCCCGAGCCTTATTATCCCACATTTGATTTTTCTGTAGGGCCCTCTAACACTAATCCGAATTTTTCTAGTCAGCAAACAGTTGGTTTTGTAACTCCGCAGGTTCCAATATCTGGGTTTGCACAATTTAGTGGTTCTCAATATGGTTTTCAACATGGTATGCGTGAATTTCCGATACATAATTCTCCATTTGGTGGAAGATTGAATTTTTCGAAT : GTAACTGCGTTTGATGATTCAAGATTTAATGCTGGGGCTTCACAAAATTTAGTTCTTAATAGACAAAATCCACCTCGGAGAACATCTAGGCTACACAAATCAACTAGATGTGGAACAGGCAGTCACAATCAAAATGAGGAAGATTTTGAAAATGAAGATGAAAATGAAGATGAGAATGAAGATGTAGAAGATTCTGATTCAGAAGAATAATTTTTTTTATGCACCTTTATTCTAAAAGGCTGAAGATTCGAATTTTGAAATATGTAAATTTTGTTGTTTCGTGCAAGTTTGAACAAAGTAATGAGATTATGTTTGAACAAGTTT : ATTAACCTTAAAAACATATACAAAATATTTAAAATCGAGTAGGACATCGTGCCT</gDNA_template>
            <first_frame> N  S  C  Y  S  S  N  F  L  K  F  F  K  A  F  S  L  *   : D  M  D  P  S  N  L  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  Q  V  Y  H  R  S  E  G  I  W  N  G  S  I  K  E  E  R  C  C  L  Y  T  S  R  G  D  I  E  F  W  Q  H  L  K  Y  H  P  L  H  S  R  I  L  Q  Y  F  E  N  C  R  F  K  G  I  L  D  V  G  C  V  P  Y  D  S  G  L  I  S  A  L  I  E  R  W  R  P  E  T  H  T  F  H  M  R  T  G  E  A  T  I  T  L  Q  D  I  E  I  L  F  G  M  V  V  D  G  S  P  I  I  L  N  G  A  D  S  L  R  I  I  G  R  Q  E  M  I  F  Q  L  T  G  W  L  P  D  T  S  C  F  S  G  V  S  R  L  S  T  Y  K  L  I  E  Y  I  E  G  L  E  V  I  N  D  N  S  T  E  H  E  V  Q  Q  R  F  R  L  Y  L  L  W  L  C  G  G  S  I  F  P  D  K  S  N  N  K  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  S  A  A  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  :  I  W  A  W  K  R  I  I  P  L  Q  P  L  P  K  P  L  R  T  N  Q  F  E  A  L  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  T  D  E  Q  V  F  N  I  I  S  I  L  Y  F  S  Y  F  I  L  F  *  I  R  I  Y  F  F  L  P  M  L  F  L  *  L  S  Y  L  I  I  F  L  *  F  I  W  Q  P  Y  S  E  D  V  I  N  G  L  P  E  W  C  R  S  G  Q  R  V  W  M  A  Q  V  P  L  I  Y  G  I  Y  R  E  W  H  M  V  D  R  V  V  R  Q  F  G  Y  L  Q  H  I  P  G  P  C  T  Q  F  S  E  Y  H  F  K  R  D  K  R  S  K  I  K  Q  E  D  I  D  A  F  N  Y  T  Q  Y  L  W  E  Q  R  Q  N  R  I  F  R  P  P  F  V  S  D  Q  I  D  Y  F  R  W  Y  M  R  H  T  R  M  V  I  G  N  P  Q  H  V  V  Q  K  G  Y  Q  H  M  A  G  R  H  E  A  L  :  A  R  G  H  E  M  Q  Y  R  R  A  R  M  I  E  N  D  E  N  Q  S  N  E  M  R  Q  Y  A  A  E  V  A  R  I  S  M  E  S  M  N  A  A  F  Q  G  T  R  L  S  F  D  H  D  Y  N  P  P  T  Q  Y  D  E  P  P  P  V  Q  V  S  R  R  S  R  Q  T  T  P  R  E  G  A  R  R  G  R  R  I  T  S  E  T  T  D  F  S  A  G  P  S  N  T  N  V  A  T  P  E  P  Y  Y  P  T  F  D  F  S  V  G  P  S  N  T  N  P  N  F  S  S  Q  Q  T  V  G  F  V  T  P  Q  V  P  I  S  G  F  A  Q  F  S  G  S  Q  Y  G  F  Q  H  G  M  R  E  F  P  I  H  N  S  P  F  G  G  R  L  N  F  S  N  :  V  T  A  F  D  D  S  R  F  N  A  G  A  S  Q  N  L  V  L  N  R  Q  N  P  P  R  R  T  S  R  L  H  K  S  T  R  C  G  T  G  S  H  N  Q  N  E  E  D  F  E  N  E  D  E  N  E  D  E  N  E  D  V  E  D  S  D  S  E  E  *  F  F  L  C  T  F  I  L  K  G  *  R  F  E  F  *  N  M  *  I  L  L  F  R  A  S  L  N  K  V  M  R  L  C  L  N  K  F  :  I  N  L  K  N  I  Y  K  I  F  K  I  E  *  D  I  V  P </first_frame>
            <second_frame>  I  L  V  I  L  Q  I  F  *  S  F  S  K  H  F  L  Y  K  :  I  W  I  H  Q  I  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  P  K  E  F  G  M  V  A  *  K  K  R  D  V  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  *  N  I  I  H  Y  I  L  A  S  F  N  I  L  K  I  V  D  L  K  E  F  L  M  L  D  V  C  R  M  T  P  D  *  F  L  L  *  L  K  G  G  V  R  K  L  I  L  F  T  C  E  L  A  R  L  P  *  L  Y  K  I  L  K  F  Y  S  E  W  *  *  M  V  V  L  *  F  *  M  E  L  I  L  *  G  L  *  V  D  K  K  *  F  F  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  Q  H  I  N  *  L  S  I  S  K  V  W  K  L  L  T  I  T  Q  L  S  M  K  F  N  K  D  L  D  Y  I  Y  Y  G  Y  V  V  D  Q  Y  F  R  I  N  L  I  I  R  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  D  R  P  H  Y  H  I  C  I  I  V  Y  A  V  R  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R :   F  G  H  G  K  E  L  F  P  C  N  H  C  Q  S  L  *  E  P  I  N  L  R  L  *  L  H  L  H  V  N  G  R  D  V  E  I  I  K  M  R  H  E  L  *  S  V  *  L  G  M  Y  L  I  I  *  L  M  N  R  Y  L  I  L  L  V  S  Y  T  F  H  I  L  F  Y  F  K  *  E  Y  I  F  F  C  Q  C  C  F  Y  N  Y  L  T  *  L  F  F  Y  S  L  F  G  S  L  I  R  K  M  L  L  M  D  C  L  S  G  V  G  Q  D  N  V  S  G  W  H  R  C  H  *  F  M  E  F  I  V  S  G  T  W  L  I  V  L  *  D  S  S  V  I  Y  N  I  F  L  D  R  V  P  N  F  P  N  I  I  L  S  V  I  N  D  Q  K  *  N  K  K  I  *  M  H  L  T  I  H  N  I  Y  G  N  N  V  K  I  V  Y  F  D  L  H  L  *  V  I  K  *  I  T  S  V  G  T  *  G  I  P  A  W  S  L  E  I  H  N  M  L  Y  K  K  G  I  N  T  W  Q  E  D  M  R  H  * :   L  G  V  M  K  C  S  I  V  E  L  G  *  L  K  M  M  K  I  N  L  M  K  *  D  N  M  Q  R  K  S  L  V  F  Q  W  S  Q  *  M  R  P  F  R  E  R  D  *  A  L  I  M  I  T  I  L  P  L  N  T  M  N  H  H  Q  Y  K  Y  L  A  D  H  D  K  Q  H  R  E  R  V  L  V  E  V  E  G  S  L  V  K  Q  L  I  F  L  Q  G  P  L  T  L  M  W  R  L  P  S  L  I  I  P  H  L  I  F  L  *  G  P  L  T  L  I  R  I  F  L  V  S  K  Q  L  V  L  *  L  R  R  F  Q  Y  L  G  L  H  N  L  V  V  L  N  M  V  F  N  M  V  C  V  N  F  R  Y  I  I  L  H  L  V  E  D  *  I  F  R  M :   *  L  R  L  M  I  Q  D  L  M  L  G  L  H  K  I  *  F  L  I  D  K  I  H  L  G  E  H  L  G  Y  T  N  Q  L  D  V  E  Q  A  V  T  I  K  M  R  K  I  L  K  M  K  M  K  M  K  M  R  M  K  M  *  K  I  L  I  Q  K  N  N  F  F  Y  A  P  L  F  *  K  A  E  D  S  N  F  E  I  C  K  F  C  C  F  V  Q  V  *  T  K  *  *  D  Y  V  *  T  S  L :   L  T  L  K  T  Y  T  K  Y  L  K  S  S  R  T  S  C   </second_frame>
            <third_frame>   F  L  L  F  F  K  F  S  K  V  F  Q  S  I  F  F  I  R :   Y  G  S  I  K  F  I  R  T  S  W  S  S  R  A  *  C  I  K  N  S  S  L  S  S  F  R  R  N  L  E  W  *  H  K  R  R  E  M  L  L  I  Y  E  S  W  *  Y  *  I  L  A  T  F  K  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  *  I  *  R  N  S  *  C  W  M  C  A  V  *  L  R  I  N  F  C  F  N  *  K  V  A  S  G  N  S  Y  F  S  H  A  N  W  R  G  Y  H  N  F  T  R  Y  *  N  F  I  R  N  G  S  R  W  *  S  Y  N  F  K  W  S  *  F  F  K  D  Y  R  *  T  R  N  D  F  S  I  N  R  M  V  T  R  Y  *  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  V  Y  R  R  F  G  S  Y  *  R  *  L  N  *  A  *  S  S  T  K  I  *  I  I  F  I  M  V  M  W  W  I  N  I  S  G  *  I  *  *  *  D  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  I  G  R  I  I  I  F  V  *  L  F  M  P  C  V  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A   : D  L  G  M  E  K  N  Y  S  P  A  T  I  A  K  A  S  K  N  Q  S  I  *  G  F  N  C  T  C  T  *  M  D  A  T  *  K  S  S  K  *  G  T  N  C  N  R  C  D  *  G  C  T  *  *  S  N  *  *  T  G  I  *  Y  Y  *  Y  L  I  L  F  I  F  Y  F  I  L  N  K  N  I  F  F  S  A  N  V  V  F  I  I  I  L  L  N  Y  F  F  I  V  Y  L  A  A  L  F  G  R  C  Y  *  W  I  A  *  V  V  S  V  R  T  T  C  L  D  G  T  G  A  T  D  L  W  N  L  S  *  V  A  H  G  *  S  C  C  E  T  V  R  L  F  T  T  Y  S  W  T  V  Y  P  I  F  R  I  S  F  *  A  *  *  T  I  K  N  K  T  R  R  Y  R  C  I  *  L  Y  T  I  F  M  G  T  T  S  K  S  Y  I  S  T  S  I  C  K  *  S  N  R  L  L  P  L  V  H  E  A  Y  P  H  G  H  W  K  S  T  T  C  C  T  K  R  V  S  T  H  G  R  K  T  *  G  I   : S  *  G  S  *  N  A  V  S  S  S  S  D  D  *  K  *  *  K  S  I  *  *  N  E  T  I  C  S  G  S  R  S  Y  F  N  G  V  N  E  C  G  L  S  G  N  A  I  E  L  *  S  *  L  Q  S  S  H  S  I  R  *  T  T  T  S  T  S  I  S  P  I  T  T  N  N  T  E  R  G  C  S  S  R  *  K  D  H  *  *  N  N  *  F  F  C  R  A  L  *  H  *  C  G  D  S  R  A  L  L  S  H  I  *  F  F  C  R  A  L  *  H  *  S  E  F  F  *  S  A  N  S  W  F  C  N  S  A  G  S  N  I  W  V  C  T  I  *  W  F  S  I  W  F  S  T  W  Y  A  *  I  S  D  T  *  F  S  I  W  W  K  I  E  F  F  E   : C  N  C  V  *  *  F  K  I  *  C  W  G  F  T  K  F  S  S  *  *  T  K  S  T  S  E  N  I  *  A  T  Q  I  N  *  M  W  N  R  Q  S  Q  S  K  *  G  R  F  *  K  *  R  *  K  *  R  *  E  *  R  C  R  R  F  *  F  R  R  I  I  F  F  M  H  L  Y  S  K  R  L  K  I  R  I  L  K  Y  V  N  F  V  V  S  C  K  F  E  Q  S  N  E  I  M  F  E  Q  V   : Y  *  P  *  K  H  I  Q  N  I  *  N  R  V  G  H  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94696" stop="94271"/>
                    <exon start="94189" stop="93662"/>
                    <exon start="93561" stop="93352"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIWQPYSEDVINGLPEWCRSGQRVWMAQVPLIYGIYREWHMVDRVVRQFGYLQHIPGPCTQFSEYHFKRDKRSKIKQEDIDAFNYTQYLWEQRQNRIFRPPFVSDQIDYFRWYMRHTRMVIGNPQHVVQKGYQHMAGRHEALARGHEMQYRRARMIENDENQSNEMRQYAAEVARISMESMNAAFQGTRLSFDHDYNPPTQYDEPPPVQVSRRSRQTTPREGARRGRRITSETTDFSAGPSNTNVATPEPYYPTFDFSVGPSNTNPNFSSQQTVGFVTPQVPISGFAQFSGSQYGFQHGMREFPIHNSPFGGRLNFSNVTAFDDSRFNAGASQNLVLNRQNPPRRTSRLHKSTRCGTGSHNQNEEDFENEDENEDENEDVEDSDSEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96014" stop="95091"/>
                    <exon start="94993" stop="94763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMDPSNLYVHPGPVEHDVLKIQVYHRSEGIWNGSIKEERCCLYTSRGDIEFWQHLKYHPLHSRILQYFENCRFKGILDVGCVPYDSGLISALIERWRPETHTFHMRTGEATITLQDIEILFGMVVDGSPIILNGADSLRIIGRQEMIFQLTGWLPDTSCFSGVSRLSTYKLIEYIEGLEVINDNSTEHEVQQRFRLYLLWLCGGSIFPDKSNNKINLDILIDMRNLDLMSTQAWGSAALSYLYNCLCRASMKKSNEVCGFLSLVQIWAWKRIIPLQPLPKPLRTNQFEALTALARKWTRRRNHQNEARTVIGVIRDVLDNLTDEQVFNIISILYFSYFILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="109312" PGL_stop="110157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109312" e_stop="109791"/>
            <exon e_start="109944" e_stop="110157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.650" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="109312" e_stop="109791" e_length="480"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.650">
            <gDNA_intron_boundary i_start="109792" i_stop="109943" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109944" e_stop="110157" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109312" stop="109791"/>
              <exon start="109944" stop="110079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109312" stop="109791"/>
              <exon start="109944" stop="110079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109322" stop="109791"/>
              <exon start="109944" stop="109972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109326" stop="109791"/>
              <exon start="109944" stop="110157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAGGACCCCTCTTTCAAGATTTCCCAGATCATACAGTCTAACAAACATATCTTTTTTTTTTTGTCAACTAAGTAGTAATTAATCAGTTCTTGTATTTAAGGTCAAAACTGATTAATTATTGGTATTAATGGATAATTTCCATTCAATATTTCCTTTACAACCGGATGATGATGCGAATTATGATTCCCATCAACAACAGCTCATTTTTCCACATGAAACCTATACCAACCCTTGTAATTTCATATACCAACAAGATCTGGTAAATGATTTTGCTTCTTTTGATTCATTGGAGTTAAGAGACAACAATCTTACATTTAACAACAATACTAACAACAATCAGAAAGGGAAATCATGTGGCGTTGAGGATAAGAAGAAACACAAGAAAGTGATGCATAGAGAAATTGAAAGGCAAAGAAGACAAGAAATGTCTACTCTTTATGCTTCTCTTCGTCAACAACTTCCTCTTGAAAATATTAAG : GGGAAGCGTTCCACATCAGATCACATACTTGAGGCAGCGAATTACATAGAACAACTACAAAAGAATGTTAAGAATTTGGAAGAAAAGAGAGAAAAGTTGATGAAAGATTCAACTGGTTTAAGCAATGTTGATGGCATTAACAAAAGTGGAAGATCAACATCTAGACACTGCTCCCCACCTGCTATTGTGACAGTGAAAGAATGCTTGGATGGGA</gDNA_template>
            <first_frame> L  R  T  P  L  S  R  F  P  R  S  Y  S  L  T  N  I  S  F  F  F  C  Q  L  S  S  N  *  S  V  L  V  F  K  V  K  T  D  *  L  L  V  L  M  D  N  F  H  S  I  F  P  L  Q  P  D  D  D  A  N  Y  D  S  H  Q  Q  Q  L  I  F  P  H  E  T  Y  T  N  P  C  N  F  I  Y  Q  Q  D  L  V  N  D  F  A  S  F  D  S  L  E  L  R  D  N  N  L  T  F  N  N  N  T  N  N  N  Q  K  G  K  S  C  G  V  E  D  K  K  K  H  K  K  V  M  H  R  E  I  E  R  Q  R  R  Q  E  M  S  T  L  Y  A  S  L  R  Q  Q  L  P  L  E  N  I  K  :  G  K  R  S  T  S  D  H  I  L  E  A  A  N  Y  I  E  Q  L  Q  K  N  V  K  N  L  E  E  K  R  E  K  L  M  K  D  S  T  G  L  S  N  V  D  G  I  N  K  S  G  R  S  T  S  R  H  C  S  P  P  A  I  V  T  V  K  E  C  L  D  G  </first_frame>
            <second_frame>  *  G  P  L  F  Q  D  F  P  D  H  T  V  *  Q  T  Y  L  F  F  F  V  N  *  V  V  I  N  Q  F  L  Y  L  R  S  K  L  I  N  Y  W  Y  *  W  I  I  S  I  Q  Y  F  L  Y  N  R  M  M  M  R  I  M  I  P  I  N  N  S  S  F  F  H  M  K  P  I  P  T  L  V  I  S  Y  T  N  K  I  W  *  M  I  L  L  L  L  I  H  W  S  *  E  T  T  I  L  H  L  T  T  I  L  T  T  I  R  K  G  N  H  V  A  L  R  I  R  R  N  T  R  K  *  C  I  E  K  L  K  G  K  E  D  K  K  C  L  L  F  M  L  L  F  V  N  N  F  L  L  K  I  L  R :   G  S  V  P  H  Q  I  T  Y  L  R  Q  R  I  T  *  N  N  Y  K  R  M  L  R  I  W  K  K  R  E  K  S  *  *  K  I  Q  L  V  *  A  M  L  M  A  L  T  K  V  E  D  Q  H  L  D  T  A  P  H  L  L  L  *  Q  *  K  N  A  W  M  G </second_frame>
            <third_frame>   K  D  P  S  F  K  I  S  Q  I  I  Q  S  N  K  H  I  F  F  F  L  S  T  K  *  *  L  I  S  S  C  I  *  G  Q  N  *  L  I  I  G  I  N  G  *  F  P  F  N  I  S  F  T  T  G  *  *  C  E  L  *  F  P  S  T  T  A  H  F  S  T  *  N  L  Y  Q  P  L  *  F  H  I  P  T  R  S  G  K  *  F  C  F  F  *  F  I  G  V  K  R  Q  Q  S  Y  I  *  Q  Q  Y  *  Q  Q  S  E  R  E  I  M  W  R  *  G  *  E  E  T  Q  E  S  D  A  *  R  N  *  K  A  K  K  T  R  N  V  Y  S  L  C  F  S  S  S  T  T  S  S  *  K  Y  *   : G  E  A  F  H  I  R  S  H  T  *  G  S  E  L  H  R  T  T  T  K  E  C  *  E  F  G  R  K  E  R  K  V  D  E  R  F  N  W  F  K  Q  C  *  W  H  *  Q  K  W  K  I  N  I  *  T  L  L  P  T  C  Y  C  D  S  E  R  M  L  G  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0003K02.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109429" stop="109791"/>
                    <exon start="109944" stop="110156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVLMDNFHSIFPLQPDDDANYDSHQQQLIFPHETYTNPCNFIYQQDLVNDFASFDSLELRDNNLTFNNNTNNNQKGKSCGVEDKKKHKKVMHREIERQRRQEMSTLYASLRQQLPLENIKGKRSTSDHILEAANYIEQLQKNVKNLEEKREKLMKDSTGLSNVDGINKSGRSTSRHCSPPAIVTVKECLDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 222 chains have been computed
$ 
$ memory statistics:
$ 386040 bytes spliced alignments in total
$ 61 spliced alignments have been stored
$ 6328 bytes was the average size of a spliced alignment
$ 20904 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1900 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 297 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:29:26
-->
