<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:41:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540739" ref_strand="+" ref_description="SGN-E540739 [TUS-61-C19](-)">
      <seq>gaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattccctcggggatctatcattgaactctccagagatcatgactacatactccccacaacaattgatggaaaggaagtgggaagcatacaaagcaaacttttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttttttacttcacaagtagctacttttttagcataaagagaattttatcaacccggggaatcaagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatttcttgcaaactgaacttagatctatgttttatatgctgatgaggggttttctctactcctgtaatattttgctttgcaatttttatagcatgattgaaataagtatgttggcttggttaccaaattttttttatttacctcattgaaatgcatcttggagtgtttcctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4995" stop="863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4695" g_stop="4514" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2636" g_stop="2545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="274" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942">
            <donor d_prob="0.779" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1602" g_stop="1162" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="715" r_length="441" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="757"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E540739" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4695" e_stop="4514"/>
          <exon e_start="2636" e_stop="2545"/>
          <exon e_start="1602" e_stop="1162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTCTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTACTGCTAAG</genome_strand>
        <mrna_strand>GAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTCCCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCCCACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTTTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTTTTTACTTCACAAGTAGCTACTTTTTTAGCATAAAGAGAATTTTATCAACCCGGGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATTTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGGGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTTTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTCCTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233879" ref_strand="+" ref_description="SGN-E233879 [cLEL-8-K19](-)">
      <seq>aaaaaaaaaaaactcgagactagcagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttctctacttcacaagtagctacttctttagcataaagagaattttatcaacacgaggaatcaagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatctcttgcaaactgaacttagatctatgttttatatgctgatgagtggttttctctactcctgtaatattttgctttgcaatttttatagcatgattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2876" stop="934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2573" g_stop="2545" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="55" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942">
            <donor d_prob="0.779" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1602" g_stop="1234" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="424" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="435"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E233879" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2573" e_stop="2545"/>
          <exon e_start="1602" e_stop="1234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAA</genome_strand>
        <mrna_strand>AGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234468" ref_strand="+" ref_description="SGN-E234468 [cLEL-8-K19](-)">
      <seq>aaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttctctacttcacaagtagctacttctttagcataaagagaattttatcaacacgaggaatccagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatctcttgcaaactgaacttagatctatgttttatatgctgatgagtggttttctctactcctgtaatattttgctttgcaatttttatagcatgattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1875" stop="934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1575" g_stop="1234" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="353"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E234468" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1575" e_stop="1234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAA</genome_strand>
        <mrna_strand>AAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCCAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746096" ref_strand="+" ref_description="SGN-E746096 [GI|47105306]">
      <seq>ggacgctcaaaccatagtaaataaaaaataaaaaatggcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccataactcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatgtcgagtcgaacttggcttctctacttcacaagtagctacttctttagcataaagagaattttatcaacacgaggaatcaagttgtggtgatttatacttaacgcatgttagcttctattggttggatgattctctttaaatagttgaactagagaattaatctcttgcaaactgaacttagatctatgttttatatgctgatgagtggttttctctaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6609" stop="981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6311" g_stop="5872" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4514" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="690" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2636" g_stop="2545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="782" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1602" g_stop="1281" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1104" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1105" polyA_stop="1124"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E746096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1104</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6311" e_stop="5872"/>
          <exon e_start="4763" e_stop="4514"/>
          <exon e_start="2636" e_stop="2545"/>
          <exon e_start="1602" e_stop="1281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGCTCAAACCATAGTAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTA</genome_strand>
        <mrna_strand>GGACGCTCAAACCATAGTAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705669" ref_strand="+" ref_description="SGN-E705669 [FA27DC03]">
      <seq>caagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagccaatgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6536" stop="1198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6236" g_stop="5872" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4514" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="615" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2636" g_stop="2545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="707" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1602" g_stop="1498" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="812" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E705669" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6236" e_stop="5872"/>
          <exon e_start="4763" e_stop="4514"/>
          <exon e_start="2636" e_stop="2545"/>
          <exon e_start="1602" e_stop="1498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATG</genome_strand>
        <mrna_strand>CAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709273" ref_strand="+" ref_description="SGN-E709273 [FA51AH09]">
      <seq>cgctagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatacaaagcaaactcttatgcagatcaatcctagacctatatattggtgatgagtcatttgatcacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6538" stop="1209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6238" g_stop="5872" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4514" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="617" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2636" g_stop="2545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="709" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1602" g_stop="1509" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="803" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E709273" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6238" e_stop="5872"/>
          <exon e_start="4763" e_stop="4514"/>
          <exon e_start="2636" e_stop="2545"/>
          <exon e_start="1602" e_stop="1509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGC</genome_strand>
        <mrna_strand>CGCTAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731936" ref_strand="+" ref_description="SGN-E731936 [LA28CE02]">
      <seq>gcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattanattacctcggggatctatcattgaactctccagagatcatgactacatactccacacaacaattgatggaaaggaagtgggaagcatancaagcaaactcttatgcagatcaaatctaaaactatatattggtgatgagtcatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6574" stop="1217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6274" g_stop="5872" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4514" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="653" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2636" g_stop="2545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="745" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1602" g_stop="1517" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="831" r_length="86" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E731936" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6274" e_stop="5872"/>
          <exon e_start="4763" e_stop="4514"/>
          <exon e_start="2636" e_stop="2545"/>
          <exon e_start="1602" e_stop="1517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAAGTAAGATGATTTATTTGCGCTGGTAGTATTTTGGAAATGAACAAGTTCCGTCTTTTTCCACTTTTTCTACAATGTTCATATTTCGATTTGATATGAATCTTTTGAAGTGAAGACTCTCAATCTGTCAGTGTAAACGCCCACAGGACGTGCATGTGTGTGTGTGTTTTGAGAAAAGATAAAATGTTATAGCTATCACTTGCTCAAATTATTGAAGAGCTATTGAATAGATACATAAGACATTAATTTATTTAGTCATTTCCCTAATAAGGTTGGCTTTCAAAGCAGTATGTTAGTGGCTACAATGAAGGGAACTTATTTCATCAAGTGAGTTCTATACAAGAACAATACCATAAGTATCCTAATTACACCGTCAGTTGGCACATTTATACCCTTACATTTCCTTTGTGGGAAGTGGCTAAATATTTTCCTGAATTTGATTACAGAAGTCATGCTGGAAATTATGCTTGTGTAGATTTCACCAATCGACCATCCCTATTCTCTTTTATACAGATATAGATTTTCTGGTCTTTACCGTCTTCACTGTCTATAAAACCAAAAGAAGAAATAGAAATTGTTATGTGTTAGCTGTTGAAAATATTCTTCGCCAAGAGACCAGTGATGATTTTTATTATCAGCTGTTAGCTCTTGAAAATATGCTTCCCCAAGATACTATTGATGATTTTCATTACCAATGGCTGATACACCTCTGTCACAGTGACTAATAAATAAGTTAAAGACATTCCATATTAAAAAAAAGACTTAAGTTAAACAGCATCAAAGTATTAGTTGAGATTTGTTCTACATGCATTTTATGTAAGAGACTGATGAGCTAAAAAAAAGACTTACATTAAACAGCATCAAAGTACTAGTTGTTTGCTTAAAGTTTGCTCTTGCATCAATCACTTAGATGAAGCTTAGGTTCTGTTTATTTTTCTTTTGTAGTTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGAT</genome_strand>
        <mrna_strand>GCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTANATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAGGAAGTGGGAAGCATANCAAGCAAACTCTTATGCAGATCAAATCTAAAACTATATATTGGTGATGAGTCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731123" ref_strand="+" ref_description="SGN-E731123 [LA26AH04]">
      <seq>aaaaaataaaaaatggcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgttggcagcagattacataagtttgggggatgtgataataaggaattgcttcaaaggttcacttcccagtttaaggatgaaattaaattacctcggggatctatcattgaactctccagagatcatgactacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6589" stop="2257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6289" g_stop="5872" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4514" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="668" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2636" g_stop="2557" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="748" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E731123" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6289" e_stop="5872"/>
          <exon e_start="4763" e_stop="4514"/>
          <exon e_start="2636" e_stop="2557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAGGTAATTCCTTAGCCTCATATTATTCATATCTTATTCAACCTTTTCTCGATTAATTACCATATCACAACAGGGGAACAAGCCTGCCAAAGCTGGGATGAAGCACTCCATTTGCTTGCAGTCTAAATTATTATGTTTTCGATATCATAGTCTTTAACATTATTACTGGACTCTTTGCCCAACTGCGATCAATTATCACTCAGCTACATACGTCACATCTTTTCTTGAGTAGAGTTATTGAGCTGTGGACAGGTTAACCCACAAGATATTTTTTGGAAATTGAAACTTCATTGTTTCTCAATCTTTCAAACTTTTACTGCCTCCTTCCAATCTCTCTCTCTCTATATAAAGGAGAATATTAGACATGTTGACGCGGCATGCCTAAAAGCTATTTATCTTTTTTTTGTGGGTTTTTTTGGCCATTTTTCAAATTTTAAAATACAAAAAATTCTCCTAACTATTAAAGATAGTCACATTTAATTTTTTCTTTATCAGTAGTCATATTTAATTTATTTTATCATTAAATGCTATTATTTTCTTTTCCTTAATATTTCTCATTTTCTTTTTCTTTTAGTATTTTAATTTCTTCCCTAATGATATTTGTCTTATTTCTTAAAATCACCTTTTCCCCTTTTAAGTTCCTTTTTACTTCTTTTTTAATTTATTCAATTCAAAAAACTATTTATGTTTTTTTAAAGATTCCTCTATTATGTCCATATAAAATCATAAATTTTTATTTCATGAAACTCCTACTCAAGATTATCCTTTTTATTTCTTATTTGAAGTAGAGTTTTCCATGTTTTGTTGTTGTAGTAAAGGTAGACTCAATAAAGAGGACTCTTAGATGTTGATCATTTACTCAGAGGAGTGTTGACAAGAGCTAGAAAATTGTGCATTGATTGATTAATATTTTTTAAAATCTATTTTCTTATGATTAAGGTCCTAATGAAGGTATGTGCATTGTGTTCTTTCTATGTAATTTTTTACGTTTGGAAGGTAAGAGCATATTGTTTGTACTTCGTTAGACGGAAATTAATTACTGTAACTTTGTCTTACGCTAATTTTTATCAAGGTTCAAACACTACTATTGATGGATTAGAAAATTTGAATATATATCTAATATTGAAATAAGGCTATTTTATGATATTCTTTTACTGTACAAAGAACCATTTATGTTTCTTCAGAGTTCTGATTAAGATACTAAGGAAGATGTGTTTTTGATACTTTAAAAAGACTATTAAGTTGGATAGAGGAAGGAAAAGAGAAAAAGAAGAAAAAGTTACTGAAATGTAAAACAGATACTACAATAAAAGATAGATGCAAAATTAAAAATATGAATATTTATTTAGATAATGATGAAAATTAGAGGAAAAACAACAATAATGAGTGAATAAAATTGACACCTCTCTTTGGCCAAGAATATTGTTAAAATTATTATGATACAAAAAAGAATTGTGTTAATTATTATTTCTGCATTCATTTTTGTTCTCTATTGTATAAATCTAAATGTTTATAAATAAAGCATTGTAAGACTTTTTAGAAATGATCATTAGAGTTTGAAAAATTGTGCAATAATTTCGTTTTTTTCTTAATAATTTAGATCATAAGAATGATGTTATACGAGTTTTTTATTATCCTAAGTTTAGAACTTTTTTTGGTCTAAGTAACAACTTATGACTTTGTTGGAAGTCATATAATTACTGACCAAACATTTCTCTTTACGAAATAACTTATACTTTGGATGTATAATACATATGCTCATATTATATATATATTTCTTCTATATATTATTTTCTCATAAAACTATTGACATCTTGTCATCTTTTTAACTTCTCAGTTCCCTAGTTCTTATTAACCAAAAGTGCCTTTTGCAACTGTAGGTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATAC</genome_strand>
        <mrna_strand>AAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728893" ref_strand="+" ref_description="SGN-E728893 [LA19BC01]">
      <seq>aaaaaataaaaaatggcttctctatcgttttccattcttgttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgccgcgtccggaggttcagccctcgctgccgccggagcgatcattgccatatctcagagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaggagttgagaaatcatctcatggaaaacaatatacgcatgactatcaggcttcaaatagtctatggcaggctaagcattaattctgtgcgcagtgctttcgaagaatctgatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6589" stop="4261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6289" g_stop="5872" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4561" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="621" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E728893" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6289" e_stop="5872"/>
          <exon e_start="4763" e_stop="4561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAAAATGGCTTCTCT-TCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGC</genome_strand>
        <mrna_strand>AAAAAATAAAAAATGGCTTCTCTATCGTTTTCCATTCTTGTT-CCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGCCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATATCTCAGAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAGGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283677" ref_strand="+" ref_description="SGN-E283677 [cLES-1-J12]">
      <seq>aaataaaaaatggcttctcttcgttttccattcttgtttcctcagccccacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggttcagccctcgctgccgccggagcgatcattgccataactcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccctttgtggggttctgtttctctagcagataactcagctccggtcactgaatcgaggaccggaatggcattcccctcaattctgaaagatactcagcgactccttggaattgggctgcgtaaaaaggcggtttttggattgaaaaacattgatgtctatgcttatggtgtgtatgctgatgatgttgatgtaaagaggtatctggctgagaagcatggacggcgctctgtttctgaactgcagcaaaaggaagagttgagaaatcatctcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6586" stop="4355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6286" g_stop="5872" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4763" g_stop="4655" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="524" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E283677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6286" e_stop="5872"/>
          <exon e_start="4763" e_stop="4655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATGGTACTACATTGTCACTGCAATTTACTTAATTGATTTTGCTCTTTATCAATTTATGTTTCTGTCTCTTCTGCAAATGTTGTTATGCTGTAGCTGAGGTTCTTAATTTTTGTGATCCTTGTGTGGAGCACAGATGCTCAAATATATAAAATGAATTCCAATTCTATGGCAATAGGAAGTTATGGAGGACACAGATAAGGGTAGAAGGCTATAGGTAACTGTGTGTTGTCTCACTTATCCTTCCATACTAGTAAATAGTAATTGTAGCATTACATTTTTTTGCTATAGAATTTATACCTTTTTTATGTTGAGAATGTATTTTATCGGCTTCTTCACTTCTGTTATTCTTTTCCCGTGCTTCTTTGTTATTTTTTTTCTTGATCCAAGGGTATATGGAAAACAATCTCTCTACTTTCCAAGTTAGGGGTAGTACACACTACTCTCCCTGTCAGTTGTCACAACTCAATTCATGCTCTACCATTTATAGCTGTTCATGTGAGATCGTGTGGGCTTATCAATTGTTAACAGCTTGTATAGGCTTATCGATTCATGCTTACTATACATGTTACTTGGATTAATTTTTTGTAGCAACAAATACAGTTTTTTGCACCGTCAGTGCCAGTGGTGGAGCCAGGAAGTTATACAAGGGATTCAAAAAAATAATAGGATTCTCATACAAGAGATTGAACATAGGTCTTAAAGTAGTTGTGCAACCCCTTTGCCACTTTACTAGAATTTTGCCTTCTATCGAGGGGATGCAATAGTATCAAGGGGTTTCAATAGTGAAATAATACTAATATACAATTCATTTTTGCTCTATTTGCTCAATGTAAATTTTTTAACGAGGGGAAGTCAATTGAATCTCCTTTCTGCAACGTAGTTCCGTCCCTGGTCAGTTCATAAAAATTAAACCTGTGGTGGTATCATATTTGAGAATCTCATTGCCGTCTCTAGTGGACCTTCCTTTATATGATGGGGGGATATGCATTATAGCACTCTCTGTCTCCTTTTGAAAGTTTGAGTGTCTGCATTTCAAAGTAAAACTCATAAAAGTGATGTTTACTTTGAATATGGCCTTTATCTAATGTGATATCAATATGGCATTCTCTAGGTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGA</genome_strand>
        <mrna_strand>AAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336299" ref_strand="+" ref_description="SGN-E336299 [cTOE-10-M9]">
      <seq>cacaagactccgtcttccgccacttcagatgctccatctcgctccttctccaccgtcgctgtcgccgtcgcgtccggaggatcagccctcgctgccgccggagcgatcattgccataactcaaagccccaaaaatccgtttctggaaaatgctatgaattttctactttccaatttctcacctaacaaaaatcattcatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6538" stop="5736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6238" g_stop="6036" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E336299" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6238" e_stop="6036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCC</genome_strand>
        <mrna_strand>CACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGATCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355460" ref_strand="+" ref_description="SGN-E355460 [cTOS-25-C9]">
      <seq>ctccatctcctacacctcaggtctatctgggtgagctgtatgtaaataattctacgctatctgatgtgacatttttagtcgaaggcaaacggttttatgcccacagaatttgtttacttgcttcttctgatgcatttcgcgcaatgtttgatggtggctacagggagagagatgccaaagatatagagattcccaacattccatgggatgtttttgagttgatgatgaggtacatatacacgggatctgttgatgttaatatgggtgttgcaaaggatcttctaagggttgctgatcaatatcttcttgagggccttaagcgtctgtgcgagtatgcaattgcccaggatatctcagtggaaaatgtctctctgatgtttgagttatcagaggctttcaatgcattgtcattaagaaatgcttgcattgtattcacattggagaagttcgacaaattaagtgtcatgccatggtattcgcaattgattcaacttatattacctgagacacgtgcgtactttgctagggtgctgagcaggccaattcaagctgacctctgatttaggttcatttttattctttgattagatgtagtatatgatgtaaattgtacaggaagtgggttttattccactcgtctctaattgcaagagttatgtgtcatttctcatcgcttgcaattccatatttgttgtgacgtttaatgtagcgtatgaagttcagttgcaacgcctgccatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10805" stop="7572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10505" g_stop="10486" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10485" i_stop="9362" i_length="1124">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9361" g_stop="9298" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="84" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9297" i_stop="9217" i_length="81">
            <donor d_prob="0.030" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9216" g_stop="9137" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="164" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9136" i_stop="8716" i_length="421">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8715" g_stop="8651" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="229" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8650" i_stop="8568" i_length="83">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8567" g_stop="8450" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="347" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8449" i_stop="8374" i_length="76">
            <donor d_prob="0.184" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8373" g_stop="8249" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="472" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8248" i_stop="8142" i_length="107">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8141" g_stop="7872" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="742" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E355460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10505" e_stop="10486"/>
          <exon e_start="9361" e_stop="9298"/>
          <exon e_start="9216" e_stop="9137"/>
          <exon e_start="8715" e_stop="8651"/>
          <exon e_start="8567" e_stop="8450"/>
          <exon e_start="8373" e_stop="8249"/>
          <exon e_start="8141" e_stop="7872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTCCTACACCTCAGGTTTGCTCCGCAGTTTAATGCTCATACTCTGGCAAAGTTTTTGTTCAGGTTTTTGGTTCTTAAGTTCTAACATGAGTAATACTAGTCTCTTGGTCATTTATGGGTCTTTATTTAGTTTTGCACTGTTACATGGTGCTTCTCATACCAAGTTAACACTAAGCTGTGTTTGTATTCTCATCGAGTATTTCGAAGATGCACGCTGAACCGTCTGATGTTCAAATTTAATCATTGATTGTGATAATTTGTGAAGCTTTTACCATTTACTTTATGAACACTTGTCAAACCAAGTTGTGCTAGTGTTACCTCAAGACTTGAAAGTTATAATGTAGCTGTCCTGCAAATTTAATACAATGTCAACTTTACCAACCATTTGAATTACTGCATAAAAACTCTGGGCGTACAGTTTCTTACCATATTGTAGTTCAGTTTGCTTCTCACATTGTGACCCTTGTGTTATATGCTGCTGTTTATACCAAGTTTATTATGAAAAAGCATCTTTTTAGAGTATGATATGCCTTTTATTTGTTCTTGGCATCTGTTATGCTGATGAGGGGTAGAAGACCTTAGAACCCTCTCTTGATATGCTAAATTTGCTTCACTGAGCATTATTTTTTTGGTTCTGGGAGGGTGTGTATACCAAGACTGGTATTCCTGTCAATCTCTTAATCTAGCCTATAACATTGTCAATTGTTCTATGGTCTTAGTAATACAAAACAGTTGAGTTCTGAAAACTTCACTTGCTGACCCTTAATCGCTGGCATGCTTGGTGTATTCTGAGAATCAATTAGGCAATATGAGGGCTTTTCTTATCCCTACATTTTGAGGATTTAGATTTTGTGAGTAACTCGTCTTCACTTTGGTGATCGTTTGAGGAGGGTTTACATGTTGACAGATTCCATAGGCTGTTTTCACCACAGTTTACTTGATGTTCACTTTCTTCACCAATTAACAATGTTGTCTGAGCTTTTCATGTTTGTTAGTTTGTATGTCTGCTTTCTGTCTTTTCTTTCTCAATTGACTTGTAGGTGGTTCATAACCATTCATGGTGCAGTAATTAGACAATGTATTTGATCCTATATTACATCTCTTTTCGTTATTTTCTCCTTGTGCATTTCTTTATGCAGGTCTATCTGGGTGAGCTGTATGTAAATAATTCTACGCTATCTGATGTGACATTTTTAGTCGAAGGTAGCAGCAGTTTTGTGATTCAAATCTTGTCATCTTTTTCATATCATGGTGTATCTTAATGATTTTTTGGTCCTTCACCAGGCAAACGGTTTTATGCCCACAGAATTTGTTTACTTGCTTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGCTACAGGGTAAGTAGAATAGTTGGCATAAAGATTTATTGCTTTTACTTTTAGGTTATTGGTTTCTAAATTGATCATTAGCAACACAAGATGAAAGCTGGTTTTGCTCCCAAATTTTGTCTTCTACTGCTTACCTTTCCCTTTAGACAAATTTAGATTGACTATCAAATGATTTTTGCAAAATTGCTAAAAGGCAAACATCTTTATTTGAAATGTTACAAGCATATGTGTCATGACAAATATGGCGTACAAAACTCTGATTACCTTTCCCTTTAGACAAATTTATATTGACTATCAAATGATTTTTGCAAAATTGCTTAAAGGCAAATATCTTTATTTGAAATGTTACAAGCATATTTGTCATGTGACATGACTGAATGCACAAATGTGGAGTACAAAACTCTGATGATCTGTTATATATTTATTGCAGGAGAGAGATGCCAAAGATATAGAGATTCCCAACATTCCATGGGATGTTTTTGAGTTGATGATGAGGTGCGCTGCTGTTTAATCTCTGTCACATCTGGGATACAAATCAATCTAGTAATATTGAAGACAGGAACGTTTATTGTTTGCAGGTACATATACACGGGATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAGGTGAGTGCTGGGGACCTTTCTGTCTTAGAGGAGGATTTATGTCTGGTTTCTCCTAATAGTTTCTTATCTTTGGTAGGATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATGGTGTGTCCAGATTCCTATCCTTTTGCTTCATCATTTCTTGGAATAAAAAAGACACGCTTAACAAACATGAATTGTGTATTAACACACTGTAATCTTGTTACATGTAGGTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCT</genome_strand>
        <mrna_strand>CTCCATCTCCTACACCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATCTGGGTGAGCTGTATGTAAATAATTCTACGCTATCTGATGTGACATTTTTAGTCGAAG.................................................................................GCAAACGGTTTTATGCCCACAGAATTTGTTTACTTGCTTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGCTACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGATGCCAAAGATATAGAGATTCCCAACATTCCATGGGATGTTTTTGAGTTGATGATGAG...................................................................................GTACATATACACGGGATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG............................................................................GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG...........................................................................................................GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230182" ref_strand="+" ref_description="SGN-E230182 [cLEL-33-I1](-)">
      <seq>atctgttgatgttaatatgggtgttgcaaaggatcttcttaagggttgctgatcnaatatcttcttgagggccttaagcgtctgtgcgagtatgcaattgcccaggatatctcagtggaaaatgtctctctgatgtttgagttatcagaggctttcaatgcattgtcattaagaaatgcttgcattgtattcacattggagaagttcgacaaattaagtgtcatgccatggtattcgcaattgattcaacttatattacctgagacacgtgcgtactttgctagggtgctgagcaggccaattcaagctgacctctgatttaggttcatttttattctttgattagatgtagtatatgatgtaaattgtacaggaagtgggttttattccactcgtctctaattgcaagagttatgtgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8852" stop="7651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8552" g_stop="8450" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8449" i_stop="8374" i_length="76">
            <donor d_prob="0.184" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8373" g_stop="8249" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="230" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8248" i_stop="8142" i_length="107">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8141" g_stop="7952" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="420" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="437"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E230182" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8552" e_stop="8450"/>
          <exon e_start="8373" e_stop="8249"/>
          <exon e_start="8141" e_stop="7952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTC-TAAGGGTTGCTGATC-AATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAGGTGAGTGCTGGGGACCTTTCTGTCTTAGAGGAGGATTTATGTCTGGTTTCTCCTAATAGTTTCTTATCTTTGGTAGGATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATGGTGTGTCCAGATTCCTATCCTTTTGCTTCATCATTTCTTGGAATAAAAAAGACACGCTTAACAAACATGAATTGTGTATTAACACACTGTAATCTTGTTACATGTAGGTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTC</genome_strand>
        <mrna_strand>ATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTTAAGGGTTGCTGATCNAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG............................................................................GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG...........................................................................................................GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315124" ref_strand="-" ref_description="SGN-E315124 [cTOA-24-A14]">
      <seq>aaacgtcgcggtgactcgaaaataattaattgatcaaatttnaacaaagttcaaaaaataaacgagttttaaaaagagtcgccacataattttaggaaaactaggaaaccaattattaatctacgaaaccaaattgattctaggtaaggggttaaagttattccgaagggaaggggttaggcatccttcggaatccacaaatgtggttcccaactgaattcattttttttcaaattgagtaagaatataaaataaacacatatcataaacacacaatacacacaataaaacaataattatcggcctaaagtttgcctaacgtcaatattcacaaaataacaaatgaaatataattcgaacattttcgaataatttcaaggaaatgcacctccaggtacctgtaaagacacttagtaaaagagttagtgtcaaaataatataaataaaaataaataactcaaataataactaaaatagaaatccgtcttattaacatgggagaccttggaaatcgacggtaatttcttcatcggccaatttcaacaactaaaatatataaacttaaattaaaattccatctttttaaattggggaggcctctaaacccgacggatatatttttatcggcccatttcaacaactaaaatatataaacttaaattaaaattccgtctttttaaaatggggaggcctctaaacccgacggataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19006" stop="20404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19293" g_stop="19886" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19887" i_stop="19984" i_length="98">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.722" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19985" g_stop="20104" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="711" r_length="121" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E315124" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19293" e_stop="19886"/>
          <exon e_start="19985" e_stop="20104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTCGCGACAACTCGAAAAATAATTAATTGATTCAATTTTAACAAAATT-AAAAAATAAACGAGTTTTAAAAAAGAGTCGCCACCTAATTTTTTAGGAAAACTAGGAAACCAATTATTAATCTACGAAACCAAATTGATTCTTAGGTAAGGGGTTCAAGTTATTCCGAAGGGAAGGGGTTAGGCACCCTTCGGAATCCACAAATGTGGTTCCCGACTGAATTCATTTTTTTTTCAAATTGAGGAAAGATATAAAATAAACACATATAATAAACACACAATATACACAATAAAGCAATAATTATCGGCCTAAAGTTTGTCTAACGTCAATATTCACAAAATAATGAATGAAATACAATTCGAAC-TTTTCGAATAATTTCAATGAGAAGCACCTCCGGGTACCTGTAAAGACACTTAGTAAAAGAGTTATTGTCAAAATAATATAAATAAAAATAAATAACTCAAATAATAACTAAAATAAAAATCCGTCTTATTAACATGGGAGGCCTTGGAAATCGACGGTTATTTCTTCATCGGCCACTTTCAACATATAAAATATATAAACTTGAATTGAAATTCCGTCCTTTTAAAATGAGGAGGCCTCCAAAACCGACGGAGAGTTTTCTCATTGGCCATTTTAACAAAACAAATAATATGAACTTGGCTAAAAATTTCCGTATTTTTTTAAAAAGGGAAGACCTCTAAACCCGACGGATAGATTTTTCATCGG-CC-TTTCAACATATAAAATATATAAACTTGAATTAAAATTCCGTCTTTTTAAAATGGGGAGGCCTCTAAGCCCGACGGATAGA</genome_strand>
        <mrna_strand>AAACGTCGCGGTGACTCG-AAAATAATTAATTGATCAAATTTNAACAAAGTTCAAAAAATAAACGAGTTTT-AAAAAGAGTCGCCACATAATTTT--AGGAAAACTAGGAAACCAATTATTAATCTACGAAACCAAATTGATTC-TAGGTAAGGGGTTAAAGTTATTCCGAAGGGAAGGGGTTAGGCATCCTTCGGAATCCACAAATGTGGTTCCCAACTGAATTCA-TTTTTTTTCAAATTGAGTAAGAATATAAAATAAACACATATCATAAACACACAATACACACAATAAAACAATAATTATCGGCCTAAAGTTTGCCTAACGTCAATATTCACAAAATAACAAATGAAATATAATTCGAACATTTTCGAATAATTTCAAGGAAATGCACCTCCAGGTACCTGTAAAGACACTTAGTAAAAGAGTTAGTGTCAAAATAATATAAATAAAAATAAATAACTCAAATAATAACTAAAATAGAAATCCGTCTTATTAACATGGGAGACCTTGGAAATCGACGGTAATTTCTTCATCGGCCAATTTCAACAACTAAAATATATAAACTTAAATTAAAATTCCATCTTTTTAAATTG..................................................................................................GGGAGGCCTCTAAACCCGACGGATATATTTTT-ATCGGCCCATTTCAACAACTAAAATATATAAACTTAAATTAAAATTCCGTCTTTTTAAAATGGGGAGGCCTCTAAACCCGACGGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747709" ref_strand="+" ref_description="SGN-E747709 [GI|6009477]">
      <seq>atgtcgatctcagcttcttttttaagatttagcctcactgctcactatcaaccttctccttcttcttctccaccaaatcaacctttcaaattccttaaaagcaacagagaacatgttgaattcaatcgaattttgcaatgtcatgctgtttctagacgtcgtacaaaagattacaaagaggtgcaaagtggttcgttgccggttatcaagtgggacgacatagcagaggaagtggacgaggaaacacacacacttgaggtgtacgatccatcctccaacgaggaccatatcgatgctattcgatcgatgctaggatcaatgggagacggagaaataagcgtctcggcctatgacacagcatgggttgccatggtgaaagatgtgaaggggactgaaactcctcagttcccttcaagccttgagtggattgcgaacaatcagttggctgatggttcatggggtgacaactccattttcttggtttatgatcgtgtcatcaacacattggcttgtgttattgccttgaagtcatggaacttgcatcctgacaagattctacttggaatgtcgtttatgagagagaatttgagcaggattggtgatgagaatgcagagcacatgcctataggcttcgaagtggcatttccttcactcattgagattgctaaaaagttaggcttagattttccttatgattctcccgtcttgcaagacatctatgccagtagacaactaaagcttacaaggataccaaaggacatcatgcacaaagtccccacaactttactccacagtttggaaggaatgacagatttggactggcaaaagttgcttcaatttcagtgcactgatggctcttttctcttctctccatcttccaccgcatatgcacttatgcaaactcaagatcataattgtctcaattatctcaaaaatgctgtccacaaattcaacggcggagttccaaatgtgtatccagtggacctatttgaacatatttggaccgttgatcggttgcaaaggcttggaatttctcggtattttgagctaaaaataaaaaagtgcattgattactttagcaaatattggacaaataaaggaatctgctgggctagaaattccccagttcaagacattgatgacacggctatggcttttagacttttgcgcttgcatggctacgctgtttctgctgacgtattcaaacattttgagagcaaaggcgaatttttctgcttcgtggggcaatcaaatcaagcagtgacaggaatgtataatctttatagggcatctcatgtaatgttctcaggagagaaaatacttgaaaatgcaaaaatatccacttctaattatctaagagaaaaacgagctcaaaatcaactgctagacaagtggatcattactaaagatttacctggagaggtgggatatgcattagatgtgccatggtatgctagcctaccccgcctagaaacaaggttctttttagaacattatggtggtgaagatgacgtgtggattggcaaaacattgtacaggatgccattggttaacaatagcctatacctagagctagcgaaatcggactataacaattgccaagctttgcaccagttcgagtggagaagaattcgcaagtggtactacgaatgcgggctaagagagtttggattaagtgaaaaaaggttgttggttacgtactatttaggcagtgctagtatatttgaggcacaaaggtcgaccgagcgaatggcttgggtcaaaaccgcagctcttatggactgtgtgaggtcttgttttggctccccacaagtatctgcagctgcatttctttgcgaattcgcacactactctagcaccgctctgaattcgaggtacaacacagaagataggctcgttggggtcattcttggaaccctaaatcatctctcactgagtgccttattaacacatggcagagacatccatcactacttgcgtcatgcttgggaaaattggctactgacggtaggagaaggagaaggagaaggagaaggaggtgctgaactcataattcgcaccttaaatttgtgcagtgttcattggatatcggaggagatattgttgtcccatccaacttaccaaaagctattggaaattaccaatagagtttctcaccgactccgtctctacaagggacacagtgaaaagcaggtaggaatgttgacttttagtgaagaaatagaaggtgacatgcaacagctagcagagctcgtgctatctcattcagatgcttccgaattggatgccaatatcaaagacacttttctcactgttgccaaaagtttttactactcagcttattgtgatgatcgaacaattaactttcacatagccaaagtgctatttgaaagagtagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40756" stop="46256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41056" g_stop="41155" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41156" i_stop="41494" i_length="339">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41495" g_stop="41563" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="169" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41564" i_stop="41652" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41653" g_stop="41741" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41742" i_stop="41855" i_length="114">
            <donor d_prob="0.875" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41856" g_stop="42159" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="562" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42160" i_stop="42233" i_length="74">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42234" g_stop="42417" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="746" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42418" i_stop="42769" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42770" g_stop="42984" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="961" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42985" i_stop="43062" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43063" g_stop="43183" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="962" r_stop="1082" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43184" i_stop="43328" i_length="145">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43329" g_stop="43441" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1195" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43442" i_stop="43634" i_length="193">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43635" g_stop="43861" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1422" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43862" i_stop="43945" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43946" g_stop="44061" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1423" r_stop="1538" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="44062" i_stop="44613" i_length="552">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="44614" g_stop="44712" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1539" r_stop="1637" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="44713" i_stop="44822" i_length="110">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="44823" g_stop="45059" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1638" r_stop="1874" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="45060" i_stop="45128" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="45129" g_stop="45240" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1875" r_stop="1986" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="45241" i_stop="45351" i_length="111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="45352" g_stop="45540" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1987" r_stop="2175" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="45541" i_stop="45728" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="45729" g_stop="45956" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="2176" r_stop="2403" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E747709" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41056" e_stop="41155"/>
          <exon e_start="41495" e_stop="41563"/>
          <exon e_start="41653" e_stop="41741"/>
          <exon e_start="41856" e_stop="42159"/>
          <exon e_start="42234" e_stop="42417"/>
          <exon e_start="42770" e_stop="42984"/>
          <exon e_start="43063" e_stop="43183"/>
          <exon e_start="43329" e_stop="43441"/>
          <exon e_start="43635" e_stop="43861"/>
          <exon e_start="43946" e_stop="44061"/>
          <exon e_start="44614" e_stop="44712"/>
          <exon e_start="44823" e_stop="45059"/>
          <exon e_start="45129" e_stop="45240"/>
          <exon e_start="45352" e_stop="45540"/>
          <exon e_start="45729" e_stop="45956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGATCTCAGCTTCTTTTTTAAGATTTAGCCTCACTGCTCACTATCAACCTTCTCCTTCTTCTTCTCCACCAAATCAACCTTTCAAATTCCTTAAAAGTAAGTTTTTCTTTTCTACTCTACTCCTTCTTCTTCTTCTTAAATTCTTTATTTAATTGACACATAAAAGTAAGTAGTCGTTTTCAACTTTAGTACTAGTCACAGTAGATGCACAATTTTTATATAAAAAAACTTTATATAACTCTCACGGTTTACTTTTTCTTATTCCTCTATTAAAAAATCAACATAATCTATCTGAAAGAGAGTTTGGAAATTTTCATGTTCAAACCAATTTTAGAATTCAAAATCTATAGTCATCTTTGTTCTTTTTTTGTTTTGTCTGATGCATCTATAGCGGAGTTTTTAAGGGAGGATTTTTTTTTTGTTCGTTTTATACAGGCAACAGAGAACATGTTGAATTCAATCGAATTTTGCAATGTCATGCTGTTTCTAGACGTCGTACAAAAGGTGATATAGTTGTAATTTTGTAAGCGATTTTTATAAACTTGTGAATTTAACAGTTGTTCTTTCACACCCCCAAAAAATTAAAATTACAGATTACAAAGAGGTGCAAAGTGGTTCGTTGCCGGTTATCAAGTGGGACGACATCGCAGAGGAAGTGGACGTGGAAACACACACACTTGAGGTTGTTGTTGAGGCCAAAATAGAAAAAATAATTTATTATTTTTTTTTAAATAAAAAAAATTACTTTTATTCGTTGAGTGTTTAATTAATCAACCTCACATAATTTGTGTAAAAGGTGTACGATCCATCCTCCAACGAGGACCATATCGATGCTATTCGATCGATGCTAGGATCAATGGGAGACGGAGAAATAAGCGTCTCGGCCTATGACACAGCATGGGTTGCCATGGTGAAAGATGTGAAGGGAACTGAAACTCCTCAGTTCCCTTCAAGCCTTGAGTGGATTGCGAACAATCAGTTGGCTGATGGTTCATGGGGTGACAACTCCATTTTCTTGGTTTATGATCGTGTCATCAACACATTGGCTTGTGTTATTGCCTTGAAGTCATGGAACTTGCATCCTGACAAGATTCTACTTGGTAATTACTAGCACTTGATGAATTTTATTCGTTGCTTCGATCGATGACTAACAATTTCGTATATTTGATTATAGGAATGTCGTTTATGAGAGAGAATTTGAGCAGGATTGGTGATGAGAATGCAGAGCACATGCCTATAGGCTTCGAAGTGGCATTTCCTTCACTCATTGAGATTGCTAAAAAGTTAGGCTTAGATTTTCCTTATGATTCTCCCGTCTTGCAAGACATCTATGCCAGTAGACAACTAAAGCTTACAAGGTAATAATACTCTTTATCACTTTTTTCTTTTGCTATCTAGTATTCATATTAAAACCTGACCAAATCTGTATTGGAAAATACTTCTAATCAAACTCAGAGCTAGCTAGAAACTGTTTTTAAGTTCACTTTTTTTTTACAATCAAATAACACATTAAGTTTTCATATGGAGAGGATCTCCATTACAAGAAAAAGTAGTTCATGAATTTATTATATGAATAATTTTTTTTTTAATTAACATATTTAGATTATAGTAGGGTAGTTAATTTTGGATACAAAAAGTTGAATTACTTTTACTTTGATTACCTTGTATGTGGATGTGAGTAATGATAACGTAACATGTGCGTGCTAATAGGATACCAAAGGACATCATGCACAAAGTCCCCACAACTTTACTCCACAGTTTGGAAGGAATGACAGATTTGGACTGGCAAAAGTTGCTTCAATTTCAGTGCACTGATGGCTCTTTTCTCTTCTCTCCATCTTCCACCGCATATGCACTTATGCAAACTCAAGATCATAATTGTCTCAATTATCTCAAAAATGCTGTCCACAAATTCAACGGCGGAGGTATATAAATATTACTCCTATATTATATTATATTATCAGTGTAATATTGATATTGAAATCGACTTATATGTTGTACAGTTCCAAATGTGTATCCAGTGGACCTATTTGAACATATTTGGACCGTTGATCGGTTGCAAAGGCTTGGAATTTCTCGGTATTTTGAGCTAGAAATAAAAGAGTGCATTGATTACGTTAGCAGGTATTATTACTGGAACTATTTTTTCTTTTAAAAAAATAAGTTAGAGAAATTCCATTTTTGTTTTTGGTTTCTTGTGCTAGTATTATTATTTTTTTATTCTTGTGCTAGTGGAATATAATAATAGTATATGTTTTTGTTTTTTAAGATATTGGACAAATAAAGGAATCTGCTGGGCTAGAAATTCCCCAGTTCAAGACATTGATGACACGGCTATGGCTTTTAGACTTTTGCGCTTGCATGGCTACGCTGTTTCTGCTGGTTAGTCATTATCTAGCGGAGTTTCCTACCACCTTTTGCTATTGTATTTTTTTAAAAGAACTATAAGTTGTATTTAAATTTTATTAATAAAAAAACACGTCATATAATGTATTATTAGTTACGTAGAAAATGAAACAAAAGTATATGCTATTGTAGTACTCATAATGTACTACTTGTTGTTGTCTTTTGTCAGACGTATTCAAACATTTTGAGAGCAAAGGCGAATTTTTCTGCTTCGTGGGGCAATCAAATCAAGCAGTGACAGGAATGTATAATCTTTATAGGGCATCTCATGTAATGTTCTCAGGAGAGAAAATACTTGAAAATGCAAAAATATTCACTTCTAATTATCTAAGAGAAAAACGAGCTCAAAATCAACTGCTAGACAAGTGGATCATTACTAAAGATTTACCTGGAGAGGTAGGTACCGGCAATTGAACTTATATTTCTATTTATTTTGTCACAATCGTTTGTTTTGATATTCTGCAACATTATATCTTACAGGTGGGATATGCATTAGATGTGCCATGGTATGCTAGCCTACCCCGCCTAGAAACAAGGTTCTTTTTAGAACATTATGGTGGTGAAGATGACGTGTGGATTGGCAAAACATTGTACAGGTACTTTCATTGATAAATCTTTATTAATTTTGCACAATAACCTCTTCTTCCACAAAAATAATATATGAATAGAGAGAATTTACACAATCATATACAGCAACTTTTAGTTATTATATAGTGGATAACCTATCTTATTTTAACTTATACATTGTTGTTATAAGAAGTCTATAAAAATGTGGTTTTAATTCTTAAAAGATGGTAGTTAGTGATAGATAATTGGAGCCCCACCATATATATAATAGTTGCAAAAGACGGCACACTCACCTTATGCCCGTCTCTTTGTTTGTTTGGTTTGGTTTCACTATCAATTTAAAATGAACACTCATGAATGATTGATTTATCTTTCAACAAATGAATACAACCAATAAATTATCATGAGAAATGGTGGGACCTTTTCAAAGGACAATAGAAAAAAATCAAAGTTTCTTGCTTTAAAAATAACATTGGATATACTGATGTGCTTTGTCGTCAGAATTCACTACACCTCCACGTTAGCCACCAAATAATCATTTTTGACCTTACGAACATATTTTTCGAATTAATGTGCTACAGGATGCCATTGGTTAACAATAGCCTATACCTAGAGCTAGCGAAATCGGACTATAACAATTGCCAAGCTTTGCACCAGTTCGAGTGGAGAAGAATTCGCAAGTAAGTTATCAATTTTATAGCGTGTGAAGTGACAAAAAAGTAATTCATGTTGCAACCGGTTAAATTACATTTAGTAAAGATTATTTATATTTATAGATGGGTACATGCAGGTGGTACTACGAATGCGGGCTAGGAGAGTTTGGATTAAGTGAAAAAAGGTTGTTGGTTACGTACTATTTAGGCAGTGCTAGTATATTTGAGGCACAAAGGTCGACCGAGCGAATGGCTTGGGTCAAAACCGCAGCTCTTATGGACTGTGTGAGGTCTTGTTTTGGCTCCCCACAAGTATCTGCAGCTGCATTTCTTTGCGAATTCGCACACTACTCTAGCACCGCTCTGAATTCGAGGTAACATTGATCATCTATATATTCTACAACATAAAAATAACGGTTGATTGATGATCATGGCAATGACAGGTACAACACAGAAGATAGGCTCGTTGGGGTCATTCTTGGAACCCTAAATCATCTCTCACTGAGTGCCTTATTAACACATGGCAGAGACATCCATCACTACTTGCGTCATGCTGTAAGTACTTATATATATTATATACTGCCTGCCTGCTTTATTAATTAATTACATGAAACAATTCACTAATTTGATGTGTGTGTCTCTCTCTCTCTCTATATATATATATAGTGGGAAAATTGGCTACTGACGGTAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTGCTGAACTCATAATTCGCACCTTAAATTTGTGCAGTGTTCATTGGATATCGGAGGAGATATTGTTGTCCCATCCAACTTACCAAAAGCTATTGGAAATTACCAATAGAGTTTCTCACCGACTCCGTCTCTACAAGGTTAGACACCAAATTAAATTACAATACATTTTTAATTTCTTCTTAAAAAACAATTTAGAAATCAGTCTCTATCTCTTAGCTATAATATATATAACTCTATTTGCTACAAATAATATAAGCCCTTTTATTATTAAAAAAGATAAATCTTTTGGTGGAGATATTATGTGGTGTAACTGCATATATTTCAGGGACACAGTGAAAAGCAGGTAGGAATGTTGACTTTTAGTGAAGAAATAGAAGGTGACATGCAACAGCTAGCAGAGCTCGTGCTATCTCATTCAGATGCTTCCGAATTGGATGCCAATATCAAAGACACTTTTCTCACTGTTGCCAAAAGTTTTTACTACTCAGCTTATTGTGATGATCGAACAATTAACTTTCACATAGCCAAAGTGCTATTTGAAAGAGTAGTTTAA</genome_strand>
        <mrna_strand>ATGTCGATCTCAGCTTCTTTTTTAAGATTTAGCCTCACTGCTCACTATCAACCTTCTCCTTCTTCTTCTCCACCAAATCAACCTTTCAAATTCCTTAAAA...................................................................................................................................................................................................................................................................................................................................................GCAACAGAGAACATGTTGAATTCAATCGAATTTTGCAATGTCATGCTGTTTCTAGACGTCGTACAAAAG.........................................................................................ATTACAAAGAGGTGCAAAGTGGTTCGTTGCCGGTTATCAAGTGGGACGACATAGCAGAGGAAGTGGACGAGGAAACACACACACTTGAG..................................................................................................................GTGTACGATCCATCCTCCAACGAGGACCATATCGATGCTATTCGATCGATGCTAGGATCAATGGGAGACGGAGAAATAAGCGTCTCGGCCTATGACACAGCATGGGTTGCCATGGTGAAAGATGTGAAGGGGACTGAAACTCCTCAGTTCCCTTCAAGCCTTGAGTGGATTGCGAACAATCAGTTGGCTGATGGTTCATGGGGTGACAACTCCATTTTCTTGGTTTATGATCGTGTCATCAACACATTGGCTTGTGTTATTGCCTTGAAGTCATGGAACTTGCATCCTGACAAGATTCTACTTG..........................................................................GAATGTCGTTTATGAGAGAGAATTTGAGCAGGATTGGTGATGAGAATGCAGAGCACATGCCTATAGGCTTCGAAGTGGCATTTCCTTCACTCATTGAGATTGCTAAAAAGTTAGGCTTAGATTTTCCTTATGATTCTCCCGTCTTGCAAGACATCTATGCCAGTAGACAACTAAAGCTTACAAG................................................................................................................................................................................................................................................................................................................................................................GATACCAAAGGACATCATGCACAAAGTCCCCACAACTTTACTCCACAGTTTGGAAGGAATGACAGATTTGGACTGGCAAAAGTTGCTTCAATTTCAGTGCACTGATGGCTCTTTTCTCTTCTCTCCATCTTCCACCGCATATGCACTTATGCAAACTCAAGATCATAATTGTCTCAATTATCTCAAAAATGCTGTCCACAAATTCAACGGCGGAG..............................................................................TTCCAAATGTGTATCCAGTGGACCTATTTGAACATATTTGGACCGTTGATCGGTTGCAAAGGCTTGGAATTTCTCGGTATTTTGAGCTAAAAATAAAAAAGTGCATTGATTACTTTAGCAA.................................................................................................................................................ATATTGGACAAATAAAGGAATCTGCTGGGCTAGAAATTCCCCAGTTCAAGACATTGATGACACGGCTATGGCTTTTAGACTTTTGCGCTTGCATGGCTACGCTGTTTCTGCTG.................................................................................................................................................................................................ACGTATTCAAACATTTTGAGAGCAAAGGCGAATTTTTCTGCTTCGTGGGGCAATCAAATCAAGCAGTGACAGGAATGTATAATCTTTATAGGGCATCTCATGTAATGTTCTCAGGAGAGAAAATACTTGAAAATGCAAAAATATCCACTTCTAATTATCTAAGAGAAAAACGAGCTCAAAATCAACTGCTAGACAAGTGGATCATTACTAAAGATTTACCTGGAGAG....................................................................................GTGGGATATGCATTAGATGTGCCATGGTATGCTAGCCTACCCCGCCTAGAAACAAGGTTCTTTTTAGAACATTATGGTGGTGAAGATGACGTGTGGATTGGCAAAACATTGTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATTGGTTAACAATAGCCTATACCTAGAGCTAGCGAAATCGGACTATAACAATTGCCAAGCTTTGCACCAGTTCGAGTGGAGAAGAATTCGCAA..............................................................................................................GTGGTACTACGAATGCGGGCTAAGAGAGTTTGGATTAAGTGAAAAAAGGTTGTTGGTTACGTACTATTTAGGCAGTGCTAGTATATTTGAGGCACAAAGGTCGACCGAGCGAATGGCTTGGGTCAAAACCGCAGCTCTTATGGACTGTGTGAGGTCTTGTTTTGGCTCCCCACAAGTATCTGCAGCTGCATTTCTTTGCGAATTCGCACACTACTCTAGCACCGCTCTGAATTCGAG.....................................................................GTACAACACAGAAGATAGGCTCGTTGGGGTCATTCTTGGAACCCTAAATCATCTCTCACTGAGTGCCTTATTAACACATGGCAGAGACATCCATCACTACTTGCGTCATGCT...............................................................................................................TGGGAAAATTGGCTACTGACGGTAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTGCTGAACTCATAATTCGCACCTTAAATTTGTGCAGTGTTCATTGGATATCGGAGGAGATATTGTTGTCCCATCCAACTTACCAAAAGCTATTGGAAATTACCAATAGAGTTTCTCACCGACTCCGTCTCTACAAG............................................................................................................................................................................................GGACACAGTGAAAAGCAGGTAGGAATGTTGACTTTTAGTGAAGAAATAGAAGGTGACATGCAACAGCTAGCAGAGCTCGTGCTATCTCATTCAGATGCTTCCGAATTGGATGCCAATATCAAAGACACTTTTCTCACTGTTGCCAAAAGTTTTTACTACTCAGCTTATTGTGATGATCGAACAATTAACTTTCACATAGCCAAAGTGCTATTTGAAAGAGTAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347637" ref_strand="+" ref_description="SGN-E347637 [cTOF-26-N21]">
      <seq>aaaaaccctagaacaaagcctccatttttgcagagaaaagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttattatcaccatttcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49656" stop="53143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49956" g_stop="50055" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="175" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="217" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="388" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="475" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="718" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E347637" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49956" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCTAGAACAAAGCCTCCATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTG</genome_strand>
        <mrna_strand>AAAAACCCTAGAACAAAGCCTCCATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATTATCACCATTTCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462297" ref_strand="+" ref_description="SGN-E462297 [cPRO-11-A20]">
      <seq>ctccatttttgcaaagaaaagagcaaggtctgtgaagaacagtattcagagcggacgcgccggagtattttgcaggggaacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctangaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagaatgccagaagaaatgatctgccagtgatagttccctttagccaaatgctngaaacgttttccatattatttatgtttctctggacatttatgcagaatctttttcattttggntgtcactcaaattatatttgcatggttatgtgctagtacttctaaacttagtgaatttgggagtgtagcgtttttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49675" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49975" g_stop="50063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50064" i_stop="50164" i_length="101">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="202" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="373" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="460" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52816" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="674" r_length="214" r_score="0.847"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E462297" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49975" e_stop="50063"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAG-ATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTC</genome_strand>
        <mrna_strand>CTCCATTTTTGCAAAGAAAAGAGCAAGGTCTGTGAAGAACAGT----ATTCAGAGCGGACGCGCCGGAGTATTTTGCAGGGGAACAGAA.....................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTANGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGAATGCC-AGAAGAAATGATCTGCCAGTGATAGTTCCCTTTAGCCAAATGCTNGAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTTCATTTTGGNT--GTCACTCAAATTATATTTGCATGGTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGCGTTTTTCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311686" ref_strand="+" ref_description="SGN-E311686 [cLEZ-9-D8]">
      <seq>atttttgcagagaaaagagcaaggtctctgaaaaagagtgtgaattcagagcggaggcgccggagtgttttgcaaaaaaaatggcggacaaggcagataccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctgtaagggccaacgtttcaaaggcctagttgaaagagaaattgtcaaggatgtaccaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatgtactggttttggcttgatctatgaatctgttgagaacgcacagaaatatgagcctaagtgcacgctgatcaagaatggattagacacaaaggttgacaaatctatgaagcatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49679" stop="52750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49979" g_stop="50055" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="194" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="365" r_length="171" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52450" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="409" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E311686" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49979" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAA</genome_strand>
        <mrna_strand>ATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAAAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAAAA.............................................................................................................AAAATGGCGGACAAGGCAGATACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGTAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGTTGAAAGAGAAATTGTCAAGGATGTACCAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATGTACTGGTTTTGGCTTGATCTATGAATCTGTTGAGAACGCACAGAAATATGAGCCTAAGTGCACGCTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGACAAATCTATGAAGCATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616300" ref_strand="-" ref_description="SGN-E616300 [66108]">
      <seq>ttttgcaaagaaaagagcaaggtctctgaagaacagtattcagagcggaggcgcagcggtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagaaaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctacacttagtgaatttgtgagtgtagcgtttttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49681" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49981" g_stop="50055" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="154" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="196" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="367" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="454" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52810" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="662" r_length="208" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E616300" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49981" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAC</genome_strand>
        <mrna_strand>TTTTGCAAAGAAAAGAGCAAGGTCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCAGCGGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAAAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTACACTTAGTGAATTTGTGAGTGTAGCGTTTTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285151" ref_strand="+" ref_description="SGN-E285151 [cLER-20-G24]">
      <seq>ttttgcagagaaaagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49681" stop="53053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49981" g_stop="50055" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="150" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="192" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="363" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="450" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52753" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="603" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E285151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49981" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATG</genome_strand>
        <mrna_strand>TTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287433" ref_strand="+" ref_description="SGN-E287433 [cLES-15-H1]">
      <seq>tttgcagagaaaagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctatgaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttattatcaccatttcaagtgctgcgacaaggatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49682" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49982" g_stop="50055" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="149" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="191" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="362" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="449" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52867" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="716" r_length="267" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E287433" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49982" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTG</genome_strand>
        <mrna_strand>TTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTATGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATTATCACCATTTCAAGTGCTGCGACAAGGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394518" ref_strand="-" ref_description="SGN-E394518 [TUS-14-B15]">
      <seq>ttgcagagaaaagagcaaggtctctgaagaagagtgtgatttcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49683" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49983" g_stop="50055" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="148" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="190" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="361" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="448" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="700" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="715"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E394518" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49983" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</genome_strand>
        <mrna_strand>TTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGATTTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394517" ref_strand="-" ref_description="SGN-E394517 [TUS-14-B15](-)">
      <seq>ttgcagagaaaagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49683" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49983" g_stop="50055" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="148" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="190" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="361" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="448" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="700" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="715"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E394517" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49983" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</genome_strand>
        <mrna_strand>TTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732881" ref_strand="+" ref_description="SGN-E732881 [LB03BF01]">
      <seq>ccgataagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49690" stop="53149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49988" g_stop="50055" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="185" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="356" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="443" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52849" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="692" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E732881" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49988" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGA</genome_strand>
        <mrna_strand>CCGATAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392937" ref_strand="-" ref_description="SGN-E392937 [TUS-37-B16](-)">
      <seq>agaaatatcatggtctctgaagaagagtgtgaattcagaacggaggcgccggagtgttttgcataaaaaatggcggacaaggcaattaccattataacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgattcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggataggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgtattccatgttattaatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtacacagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttacagtgctgcgaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49692" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49989" g_stop="50055" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="141" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="183" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="354" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="441" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52861" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="702" r_length="261" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E392937" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392937" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49989" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAA</genome_strand>
        <mrna_strand>AGAAA-TATCATGGTCTCTGAAGAAGAGTGTGAATTCAGAACGGAGGCGCCGGAGTGTTTTGCATAA.............................................................................................................AAAATGGCGGACAAGGCAATTACCATTATAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGATTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGATAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTATTCCATGTTATTAATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACACAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTACAGTGCTGCGACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393767" ref_strand="-" ref_description="SGN-E393767 [TUS-14-A15](-)">
      <seq>ggcgattgggtaccgggccccccctttgcagagaaaagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggggagagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49682" stop="53047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49989" g_stop="50055" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="98" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="173" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="215" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="386" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="473" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52747" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="620" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E393767" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393767" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49989" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATT</genome_strand>
        <mrna_strand>AGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGGGAGAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559143" ref_strand="+" ref_description="SGN-E559143 [18594]">
      <seq>gaaaagagcaaggtctctgaagaacagtattcagagcggaggcgcagcggtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagaaaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctacacttagtgaatttgtgagtgtagcgttaaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49690" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49990" g_stop="50055" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="145" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="187" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="358" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="445" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52813" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="656" r_length="211" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E559143" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49990" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATT</genome_strand>
        <mrna_strand>GAAAAGAGCAAGGTCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCAGCGGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAAAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTACACTTAGTGAATTTGTGAGTGTAGCGTTAAAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611846" ref_strand="+" ref_description="SGN-E611846 [61602]">
      <seq>gaaaagagcaaggtctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatggttcctttaagccaaatgctgaaaacgtttaccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaatttgggagtgtagcgtttttctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49690" stop="53109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49990" g_stop="50055" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="145" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="187" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="358" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="445" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52810" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="653" r_length="208" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E611846" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49990" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAC</genome_strand>
        <mrna_strand>GAAAAGAGCAAGGTCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATGGTTCCTTTAAGCCAAATGCTGAAAACGTTTACCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGCGTTTTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405428" ref_strand="+" ref_description="SGN-E405428 [PPC-18-C6]">
      <seq>gaaaagagcaaggtctgtgaagaacagtattcagagcggacgcgccggagtattttgcaggggaacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcangaatggattagacacaaaggttgagaaatctangaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttncattttggttgtcactcaaattatatttgcatggttatgtgctagtacttctaaacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49690" stop="53079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49990" g_stop="50055" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="145" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="187" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="358" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="445" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52779" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="622" r_length="177" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="632"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E405428" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49990" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTA</genome_strand>
        <mrna_strand>GAAAAGAGCAAGGTCTGTGAAGAACA--GT--ATTCAGAGCGGACGCGCCGGAGTATTTTGCAGGG.....................................................................................................GAACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCANG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTANGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTNCATTTTGGTT--GTCACTCAAATTATATTTGCATGGTTATGTGCTAGTACTTCTAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340787" ref_strand="+" ref_description="SGN-E340787 [cTOF-5-I22]">
      <seq>aaaagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttattgtgttagtactcagaaacttagtgaatttggggagtngtaccgtttttctcaacattctccttattttataatcaccattttcaagtgctgcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49691" stop="53152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49991" g_stop="50055" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="140" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="182" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="353" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="440" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52859" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="703" r_length="263" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E340787" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49991" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTA-TGTGTTAGTACTCAGAAACTTAGTGAATTT-GGGAGT-GTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCA-TTTCAAGTGCTGCGACAAGGATCAT</genome_strand>
        <mrna_strand>AAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATTGTGTTAGTACTCAGAAACTTAGTGAATTTGGGGAGTNGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTTCAAGTGCTGCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337513" ref_strand="+" ref_description="SGN-E337513 [cTOE-11-H2]">
      <seq>aaaagagcatggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49691" stop="50677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49991" g_stop="50055" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="140" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50377" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="161" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E337513" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49991" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCT</genome_strand>
        <mrna_strand>AAAAGAGCATGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343838" ref_strand="+" ref_description="SGN-E343838 [cTOF-12-I18]">
      <seq>aagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttncaattttggttgagtcactcaaattatatttgcatgtttaatgtgttagtactcagaaacttagtgaatttngggagtgtaccccgtttttctcaacattctccttattttataatcaccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49693" stop="53137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49993" g_stop="50055" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="138" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="180" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="351" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="438" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52837" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="680" r_length="242" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E343838" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49993" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTT-CAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTT-ATGTGTTAGTACTCAGAAACTTAGTGAATTT-GGGAGTGTA--CCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTT</genome_strand>
        <mrna_strand>AAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTNCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTAATGTGTTAGTACTCAGAAACTTAGTGAATTTNGGGAGTGTACCCCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265035" ref_strand="+" ref_description="SGN-E265035 [cLEI-2-O1]">
      <seq>aagagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49693" stop="53058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49993" g_stop="50055" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="138" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="180" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="351" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="438" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52758" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="596" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E265035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49993" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTAT</genome_strand>
        <mrna_strand>AAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715212" ref_strand="+" ref_description="SGN-E715212 [FB13CF06]">
      <seq>agagcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49694" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49994" g_stop="50055" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="137" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="179" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="350" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="437" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52817" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="654" r_length="217" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E715212" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49994" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCC</genome_strand>
        <mrna_strand>AGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690881" ref_strand="+" ref_description="SGN-E690881 [LH_Ea04K15]">
      <seq>cgtcaaggtctctgaagaagagtgtgaattcagagcggacgcgccggagtgttctgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctagtgatagttcctttaagccaagtgcagaaaacgttttccatattatttatgtttctctggcaacttatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcggaaacttagtgtaccgtttttctctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49995" g_stop="50055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="136" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="178" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="349" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="436" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52779" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="615" r_length="179" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E690881" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49995" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTA</genome_strand>
        <mrna_strand>CGTCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGACGCGCCGGAGTGTTCTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTAGTGATAGTTCCTTTAAGCCAAGTGCAGAAAACGTTTTCCATATTATTTATGTTTCTCTGGCAACTTATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCGGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310008" ref_strand="+" ref_description="SGN-E310008 [cTOA-4-I17]">
      <seq>agcaaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcacatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49696" stop="52954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49996" g_stop="50055" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="135" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="177" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="348" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="435" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52654" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="489" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E310008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49996" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAG</genome_strand>
        <mrna_strand>AGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCACATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451934" ref_strand="+" ref_description="SGN-E451934 [cSTS-15-I15]">
      <seq>gcaaggtctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaatttgggagtgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49697" stop="53098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49997" g_stop="50055" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="138" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="180" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="351" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="438" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52798" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="634" r_length="196" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E451934" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49997" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACC</genome_strand>
        <mrna_strand>GCAAGGTCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449121" ref_strand="+" ref_description="SGN-E449121 [cSTS-5-M10]">
      <seq>gcaaggtctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49697" stop="53084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49997" g_stop="50055" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="138" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="180" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="351" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="438" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52785" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="621" r_length="183" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E449121" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49997" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAAT</genome_strand>
        <mrna_strand>GCAAGGTCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352924" ref_strand="+" ref_description="SGN-E352924 [cTOS-11-H12]">
      <seq>caaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttatatcaccatttcaagtgctgcgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="53152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49998" g_stop="50055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="133" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="175" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="346" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="433" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52856" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="688" r_length="255" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E352924" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49998" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGAT</genome_strand>
        <mrna_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTAT-ATCACCATTTCAAGTGCTGCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340199" ref_strand="+" ref_description="SGN-E340199 [cTOF-2-K20]">
      <seq>caaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49998" g_stop="50055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="133" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="175" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="346" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="433" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52854" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="687" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="702"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E340199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49998" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGG</genome_strand>
        <mrna_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352709" ref_strand="+" ref_description="SGN-E352709 [cTOS-11-F13]">
      <seq>caaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttncagtgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="53148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49998" g_stop="50055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="133" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="175" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="346" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="433" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52848" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="681" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E352709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49998" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCG</genome_strand>
        <mrna_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTNCAGTGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406948" ref_strand="+" ref_description="SGN-E406948 [PPI-5-D21]">
      <seq>caaggtctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaatttgggagtgtagcgtttttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49998" g_stop="50055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="179" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="350" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="437" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52817" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="652" r_length="215" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E406948" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49998" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCC</genome_strand>
        <mrna_strand>CAAGGTCTCTGAAGAACAGT----ATTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGCGTTTTTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694721" ref_strand="+" ref_description="SGN-E694721 [LH_Ea04K15](-)">
      <seq>caaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttctgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctagtgatagttcctttaagccaagtgcagaaaacgttttccatattatttatgtttctctggcaacttatgcagaatcctttcaattgtggttgagtcactcaaattatatttgcatgtttatgaggggtactcggaaacttagtgtaccgtttttctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49998" g_stop="50055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="133" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="175" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="346" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="433" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52779" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="611" r_length="178" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="639"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E694721" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49998" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTA</genome_strand>
        <mrna_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTCTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTAGTGATAGTTCCTTTAAGCCAAGTGCAGAAAACGTTTTCCATATTATTTATGTTTCTCTGGCAACTTATGCAGAATCCTTTCAATTGTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGAG-GGGTACTCGGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562599" ref_strand="+" ref_description="SGN-E562599 [1039]">
      <seq>caaggtctctgaagaacagtattccgagcggaggcgccggagtattttgcaggtgcacagaaaaaatggcggacaatgcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctgggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggcttagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaaatagagccccgaaagtacgcggtgtcaagaagactaaggcaggagatgcccagaagaactgatctgccagtgatagttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49698" stop="52951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49998" g_stop="50055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.845"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="180" r_length="43" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="351" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="439" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52651" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="490" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E562599" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49998" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCT-GGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAG-AATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTT</genome_strand>
        <mrna_strand>CAAGGTCTCTGAAGAACAGT----ATTCCGAGCGGAGGCGCCGGAGTATTTTGCAGGT.....................................................................................................GCACAGAAAAAATGGCGGACAATGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAAATAGAGCCCCGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCCAGAAGAACTGATCTGCCAGTGATAGTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340634" ref_strand="+" ref_description="SGN-E340634 [cTOF-1-K8]">
      <seq>aaggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattgtgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtcccgtttttctcaacattctccttattttataatcaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49699" stop="53134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49999" g_stop="50055" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="132" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="174" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="345" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="432" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="675" r_length="243" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E340634" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49999" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTG</genome_strand>
        <mrna_strand>AAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTGTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTCCCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579285" ref_strand="+" ref_description="SGN-E579285 [86412]">
      <seq>aaggtctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatggttcctttaagccaaatgctgaaaacgtttaccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49999" g_stop="50055" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="136" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="178" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="349" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="436" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52773" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="607" r_length="171" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E579285" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49999" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGA</genome_strand>
        <mrna_strand>AAGGTCTCTGAAGAACA--GT-A-TTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATGGTTCCTTTAAGCCAAATGCTGAAAACGTTTACCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713369" ref_strand="+" ref_description="SGN-E713369 [FB08BG09]">
      <seq>ggtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49701" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50001" g_stop="50055" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="130" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="172" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="343" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="430" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52818" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="648" r_length="218" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E713369" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50001" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCT</genome_strand>
        <mrna_strand>GGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401287" ref_strand="+" ref_description="SGN-E401287 [PPC-3-N5]">
      <seq>ggtctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtgtctctggacatttatgcagaatcttttcaattttgggtgtcactcaaaatatatttgcatggttatgtgctagcacttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50001" g_stop="50055" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="134" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="176" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="347" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="434" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="596" r_length="162" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="614"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E401287" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50001" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTA</genome_strand>
        <mrna_strand>GGTCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTGTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGG--GTGTCACTCAAAATATATTTGCATGGTTATGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713658" ref_strand="+" ref_description="SGN-E713658 [FB09BA07]">
      <seq>gtctctgaagaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttcanaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49702" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50002" g_stop="50055" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="129" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="171" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="342" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="429" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52810" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="639" r_length="210" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="654"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E713658" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50002" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAC</genome_strand>
        <mrna_strand>GTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCANAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476835" ref_strand="+" ref_description="SGN-E476835 [cSTB-46-G21]">
      <seq>tctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50003" g_stop="50055" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50157" g_stop="50239" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="132" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="174" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="345" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="432" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52707" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="539" r_length="107" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E476835" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50003" e_stop="50055"/>
          <exon e_start="50157" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGC</genome_strand>
        <mrna_strand>TCTCTGAAGAACA--GT--ATTCAGAGCGGAGGCGCCGGAGTATTTTGCAGGG.....................................................................................................GCACAGAAAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555174" ref_strand="+" ref_description="SGN-E555174 [cTSC-6-K18]">
      <seq>gaagagtgtgaattcagagcggaggcgccggagtgttttgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaggactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49711" stop="53096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50011" g_stop="50055" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="162" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="333" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="420" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52793" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="613" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="628"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E555174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50011" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGT</genome_strand>
        <mrna_strand>GAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAGG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690832" ref_strand="+" ref_description="SGN-E690832 [LH_Ea04I14]">
      <seq>cagttgtgaattcagagcggaggcgccggagtgttctgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctagtgatagttcctttaagccaagtgcagaaaacgttttccatattatttatgtttctctggcaacttatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49715" stop="53075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50012" g_stop="50055" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="118" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="160" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="331" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="418" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52784" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="602" r_length="184" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E690832" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50012" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAA</genome_strand>
        <mrna_strand>CAG-TTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTCTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTAGTGATAGTTCCTTTAAGCCAAGTGCAGAAAACGTTTTCCATATTATTTATGTTTCTCTGGCAACTTATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694672" ref_strand="+" ref_description="SGN-E694672 [LH_Ea04I14](-)">
      <seq>tgtgaattcagagcggaggcgccggagtgttctgcagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatttaggaagcagatgaaggagaggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctagtgatagttcctttaagccaagtgcagaaaacgttttccatattatttatgtttctctggcaaagtatgcagaatcctttcaattttggttgagtcactctaaatgtatttgcatgtttatgtgttagtactcggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49717" stop="53075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50017" g_stop="50055" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="156" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="327" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="414" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52786" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="600" r_length="186" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E694672" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50017" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATT</genome_strand>
        <mrna_strand>TGTGAATTCAGAGCGGAGGCGCCGGAGTGTTCTGCAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATTTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTAGTGATAGTTCCTTTAAGCCAAGTGCAGAAAACGTTTTCCATATTATTTATGTTTCTCTGGCAAAGTATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCTAAATGTATTTGCATGTTTATGTGTTAGTACTCGGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732392" ref_strand="+" ref_description="SGN-E732392 [LB02AB11]">
      <seq>gtgaattcacagcggaggcgccggagtgttttgcagaaaacatggcggacaaggcatttaccattataacaaggaagttcatgaccaatcgtctacttgcaaagaaacaattcattatcaatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgatgtgaaagatcccaatgcaatctttgtgtttaagatcaggaccccttttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcacgaatggattatacacaaaggttgagaaatctaagaagcagatgaatgatacgaagaatagagccaagaaaatacgcggtgtcaataagactaacgcaggagatgccaagaagaaatgatctgctggtgataattcctttaagccaaatgcacaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgaaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49718" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50018" g_stop="50055" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="155" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="326" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="413" r_length="87" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52861" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="674" r_length="261" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E732392" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50018" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAA</genome_strand>
        <mrna_strand>GTGAATTCACAGCGGAGGCGCCGGAGTGTTTTGCAGAA.............................................................................................................AACATGGCGGACAAGGCATTTACCATTATAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAAGAAACAATTC.....................................................................................................................ATTATCAATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGATGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGATCAGGACCCCTTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTATACACAAAGGTTGAGAAATCTAAGAAGCAGATGAATGATACGAAGAATAGAGCCAAGAAAATACGCGGTGTCAATAAG...........................................................................................................ACTAACGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAATTCCTTTAAGCCAAATGCACAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGAAAAAAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732024" ref_strand="+" ref_description="SGN-E732024 [LB01AC10]">
      <seq>cgccggagtgtttcgctgaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49846" stop="53111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50036" g_stop="50055" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="95" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="137" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="308" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52810" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="605" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="615"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E732024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50036" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGTGTTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAC</genome_strand>
        <mrna_strand>CGCCGGAGTGTTTCGCTGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392938" ref_strand="-" ref_description="SGN-E392938 [TUS-37-B16]">
      <seq>ttttgcagaaaaaatggcggtcaaggcagtttccattagaacaaggaagttcatgaccaattgtctacttgcaaggaaacaattcattattgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcatgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaattttggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgttgcgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49853" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50046" g_stop="50055" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="85" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="127" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="298" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52601" g_stop="52852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="637" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="652"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E392938" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50046" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</genome_strand>
        <mrna_strand>TTTTGCAGAA.............................................................................................................AAAATGGCGGTCAAGGCAGTTTCCATTAGAACAAGGAAGTTCATGACCAATTGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATTGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCATGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATTTTGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGTTGCGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572573" ref_strand="+" ref_description="SGN-E572573 [31748]">
      <seq>cacagaaaaaatggcggacaaggcagttaccattagaacaatgaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgccatcctggaagggccaacgtttcaaaggccgagttgaaagaaaaattgtcaaggatgtacgacgtgaaagatcccaatgcaatctttgtgtttaagttcaggagccattttggaggagtttaatctactgggttttggcttgatctatgattctgtcgagaacggcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49861" stop="52736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50049" g_stop="50055" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="82" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="125" r_length="43" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="298" r_length="173" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52407" g_stop="52436" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="328" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E572573" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50049" e_stop="50055"/>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAAGTATAACATTTTCTATTAGTAAATAAGAAACTCTGTATTTGTATTACATAGATATTTTCGTATGTGGATTAAAAAATGCAATTAAATTTTAGTTGATTTCTGTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTG-CATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACT-GGTTTTGGCTTGATCTATGATTCTGTTGAGAAC-GCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCT</genome_strand>
        <mrna_strand>CACAGAA.............................................................................................................AAAATGGCGGACAAGGCAGTTACCATTAGAACAATGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAAAAATTGTCAAGGATGTACGACGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGAGCCATTTTGGAGGAGTTTAATCTACTGGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597424" ref_strand="+" ref_description="SGN-E597424 [40927]">
      <seq>ctgaagaacagtattcagagcggaggcgcagcggtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagaaaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgttcatgtgctatacttctacacttatgcaatttgtagtgtacgttttctcaacatgttctttattttataatcaccatttcagtgttgctacaaagcattatgattacagttactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="129" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="171" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="342" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="429" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52601" g_stop="52854" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="676" r_length="247" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E597424" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGG</genome_strand>
        <mrna_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAAAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTCATGTGCTA-TACTTCTACACTTA-TGCAATTTGTAGTGTA-CG-TTTTCTCAACATGTTCTTTATTTTATAATCACCATTTC-AGTGTTGCTACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460857" ref_strand="+" ref_description="SGN-E460857 [cPRO-33-J1]">
      <seq>gaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaatttgggagtgtagcgtttttctcaacatgttctttattttataatcaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="124" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="166" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="337" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="424" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52601" g_stop="52844" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="666" r_length="242" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E460857" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGC</genome_strand>
        <mrna_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGCGTTTTTCTCAACATGTTCTTTATTTTATAATCACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474242" ref_strand="+" ref_description="SGN-E474242 [cSTB-35-L20]">
      <seq>ctctgaagaacagtattcagagcggaggcgccggagtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttaatgaatttgggagtgtagcggtttttttaacatgttctttattttataatcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="131" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="173" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="344" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="431" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52601" g_stop="52835" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="664" r_length="233" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E474242" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCAT</genome_strand>
        <mrna_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAATGAATTTGGGAGTGTAGCGGTTTTTTTAACATGTTCTTTATTTTATAATCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558865" ref_strand="+" ref_description="SGN-E558865 [18273]">
      <seq>ggtctctgaagaacagtattcagagcggaggcgcagcggtattttgcaggggcacagaaaaaatggcggacaaggcagttaccattagaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgacgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagaaaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctacacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49720" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="50239" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="134" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="176" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="347" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="434" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52601" g_stop="52788" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="620" r_length="186" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E558865" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTG</genome_strand>
        <mrna_strand>AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGACGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAAAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTACACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393968" ref_strand="-" ref_description="SGN-E393968 [TUS-14-A15]">
      <seq>gaacaaggaagttcatgaccaatcgtctacttgcaaggaaacaattcattatcgatgttttgcatcctggaagggccaacgtttcaaaggccgagttgaaagagaaattgtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49893" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50193" g_stop="50239" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50357" g_stop="50398" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="89" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51228" g_stop="51398" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="260" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="347" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52601" g_stop="52852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="599" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="614"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E393968" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393968" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50193" e_stop="50239"/>
          <exon e_start="50357" e_stop="50398"/>
          <exon e_start="51228" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTCGTAAGTCTAAGACGCAATATCTAATACTAACATCAATTGCCGTGCTGCAGTGCATATCTAAAACTTCATATTTGCTGATCTGTTTTTATTTGTTCTAATGGCATGCCATTTTTTCAGATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAGGTTCTGACATACAAACTTATTGGCTTTGTTTCCTTTATTTTTCTGATTGCCTTGCAAGTTCAGCTAATAAGTAGTCGTTAATACAATTATTGGTTATTAGAATGAAATGACATAAGATCATGTGGCTATTGAGTAGTCATATAGGCTGTCAACTTAGTCTCAGAAGCAAATGTGCTTATTTGATGCAAAATATATCTTCTTCCAAGCTCCTCTCTCCTCTAGAGTAAAAAGAAGCTTGAAAATAGTGCAACTTAGTAAGGGGTACAGTGCGGTATCCAACTAGAATATGATTATTACTTCCTCTGTCCCAATTTATGGGAAGGTGTTTAATAATGAAAATTAACTTTTGATACTTGTGCTCTTGAATAAGCCTTATATATTTGTGTGACCTTAAATCATCTCATTAAAAGTAAAATGAAAGGTTTAAGGTTGAATTATTATATAATATAGATATGTGTCATCCCTTGTATGATGGACTAAAAAGGAAAGAGTCTCACTTAAATTGGGATAGAGGGGGTAATTGATATGGGGAGAGAATGGTTGAGAACCAAGGTTCAAAATTTCTGTCCAAGGCTCCGAGCCTTGTTTGATATAAATATGTACCGGTACATGTGCTTGTGGGGAACGACAAATTGGTGATAGAGCTACTCATACCTATGCATGTTGGAGCTAATATGTACCTCGTGGAATTAGTTGAGGTGCGCCCAAACATGATTTGGTCTTCACGATTCCCAAAAAAATAGAGAGAGTGGTGCTAATCACTTATAGCTCATTTGATTGTTATATACCTTTGGTTTTAATCTCTTACCTGGTTAACCTTTCCTTGTAGGCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</genome_strand>
        <mrna_strand>GAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC.....................................................................................................................ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202322" ref_strand="-" ref_description="SGN-E202322 [cLEC-6-B17]">
      <seq>gtcaaggatgtacgaggtgaaagatcccaatgcaatctttgtgtttaagttcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50948" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51248" g_stop="51398" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="238" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="490" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="504"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E202322" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202322" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51248" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</genome_strand>
        <mrna_strand>GTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602452" ref_strand="+" ref_description="SGN-E602452 [55516]">
      <seq>aagtcaggacccattttggaggaggcaaatctactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctacacttagtgaatttgtgagtgtagcgtttttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50994" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51294" g_stop="51398" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="191" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52817" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="406" r_length="215" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E602452" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51294" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCC</genome_strand>
        <mrna_strand>AAGT-CAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTACACTTAGTGAATTTGTGAGTGTAGCGTTTTTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354128" ref_strand="+" ref_description="SGN-E354128 [cTOS-16-D10]">
      <seq>ttttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51008" stop="53146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51308" g_stop="51398" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="178" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52847" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="425" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E354128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51308" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGC</genome_strand>
        <mrna_strand>TTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357426" ref_strand="+" ref_description="SGN-E357426 [cTOS-23-N18]">
      <seq>ttttggaggaggcaaatctactggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgaannnnnaaananaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51008" stop="53146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51308" g_stop="51398" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="178" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52845" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="423" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="453"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E357426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51308" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCT</genome_strand>
        <mrna_strand>TTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587115" ref_strand="+" ref_description="SGN-E587115 [78228]">
      <seq>tactggttttggcttgatctatgattctgtcgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatggttcctttaagccaaatgctgaaaacgtttaccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaatttgggagtgtagcgtttttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51026" stop="96534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51326" g_stop="51398" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="160" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52810" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="368" r_length="208" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52811" i_stop="54704" i_length="1894">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54705" g_stop="54744" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="408" r_length="40" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E587115" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51326" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52810"/>
          <exon e_start="54705" e_stop="54744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTGTTAATGGTACTGCTGTAGTTGATAGTTTTCACGTCTGAAGTGATGAACGCTAAAAAGGAAAGAAGTGTGTTTATTGATAAGAAAGTATAAAGGTGAGAGAGTAGTACAAGGTTGGAAGGACATACCAAACGATCATTAATAGCGATAGGCATCTTAAATCAGCGTAGGATAGTATCCTTAGGTATTTTGAGGATAGTCAGCCTGGGCAATCTTTATGTTTCTTTGATATTACTCAAACTCTAAAGCTAGCTTTTTTTAAGAGATGATTGTCCAAGGTCCGTATAATGAATTCGCACTTCAACACACTCCAGGACAATAAGATGGAGCATGTGACACTTGTCTTAATTCATCCCAAAAAGTTAGATTCCCAAGTCCATAGGAGGAACTAACCTACAACAAAACGACTCCAACTCAAGTGCGGATAACATAAACATGGGGGCTCAAATGGAGAAAACTACATTCAGCCCAGGTGTGCTAGTGAACGATTGATTGTCTGTATTCGAATTTGAGTTTGAAAATGAAAAGTTTTTAACTATATCTTCCTTATAGGGCTCTCGTCGAATTGAAAGGGATGCTTTGCCTGCCAGATTTGTACCACAGCTAAAACTCCTTTTCTCATTCTCATACCCGATTTTCATGTATAACAACATTTCGCTATACAATCCAAAAAAAACAACATTAGGAATGACCAAAAAATAACCAGGTACTTAGAAGCAGCACGTTGATATGTGCAGCCTACTAATTGGCAAAGCAAAGAGTGAATTGGTAAAATATGCTGCTGGGTATCCTTTTTATTTCAATAATGTATGAACGGGAAACACAATCCAGCTATTGTACAGCCTAAAGAGACTAAGAATGAGGAACTATAAACTCAATAAATTAAAAGACAAGGTTTTACAAAAAGCTTCTTCTGGGGTGGCCAACTAGTTAGTTACTTGAAAAGCAACAAGAGTCATTAATTTGTTGTTGGTTGTAAAATTTTCTTGGAAACCTGCTTTCTAATTGCAACAAGTCAAAATAAAGTGCCTACTAACATTAACACATAAATTGAAAACTATGTATGATCATATATACATCTAAAGAGAAACTAACATTCAATTCAAACATTCAAATTATATCCCATTGGCAGGACCAGCCACAATTAACTAAAAAAAAACTAAAACTTGGAAAAACAATCGAGTGAGACAAAAGAGGATTATTGTACGAGAACAAAACCACCTGCTCGGACGATATCGCCGTCGTCTTCCTCCTCCCCTTTGGGCACCGTGACCACCAATTCACCGTCACTAAAACGGGCACTAGCCAGTTCCGGCAGAGTTGTGGCCGGAAGCCGAAATCGCCACAAGTCGAGGTCCAATGAAGAATCAAAAACGTTATCAGCTCGGATAACAATCTTAGTAACACCCGGATAGATCTCAACTATGTGAGCTCTAATATTATCGCCGACATCATCTGTTGGGATGACAAATCGCAACGAATCAGAAGTTTCGTGGATTGAAACATCAGAATCGGAATGAAAAGGAAGTTCTAGAACCTTGGCAAAAATATGAGGTAGTCTCCGGAGCTTCTTTTTCCGGCAAACTGAGCCGTTAGCCGGAGACAAAACGTTACTTGTTACTGGATGAACCTTCATGGTGAAAGAATTAAACCCGAACCGAAATAGTTGTGCGCAGAGAGAGAGAGAGTTATAGGACTCAACTGTAGTGGGAATCCTGGCTTTAGATGTGAGAGTAACAAATGGGCAGGCAGGTTCATCTGTTTTTTATTTATATAAATAAATAATACTATATTCTACTACTCTACTATTATTTTATGTTATCACTAAATTATTATTTTTATAAATAAACATAAAAGGAAAATGAAATAAATATAAAACA</genome_strand>
        <mrna_strand>TACTGGTTTTGGCTTGATCTATGATTCTGTCGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATGGTTCCTTTAAGCCAAATGCTGAAAACGTTTACCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGCGTTTTTCTCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350250" ref_strand="+" ref_description="SGN-E350250 [cTOS-4-L1]">
      <seq>tggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccgagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaanaaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51029" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51329" g_stop="51398" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="157" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52854" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="411" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="426"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E350250" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51329" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGG</genome_strand>
        <mrna_strand>TGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCGAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354410" ref_strand="+" ref_description="SGN-E354410 [cTOS-17-M10]">
      <seq>tggttttggcttgatctatgattctgttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51029" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51329" g_stop="51398" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="157" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="409" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="426"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E354410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51329" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</genome_strand>
        <mrna_strand>TGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349734" ref_strand="+" ref_description="SGN-E349734 [cTOS-3-G9]">
      <seq>ttgagaacgcaaagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaagaaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagttcctttaagccaaatgcagaaaacgttttccatgttatttatgtttctctggcaactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtttttctcaacattctccttattttataatcaccatttcaagtgctgcgacaaggatcataacttttgttaatggtactgctgtagttgatagttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51055" stop="53198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51355" g_stop="51398" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="131" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52899" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="430" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E349734" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51355" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTGTTAATGGTACTGCTGTAGTTGATAGTTTTCAC</genome_strand>
        <mrna_strand>TTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTGTTAATGGTACTGCTGTAGTTGATAGTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288363" ref_strand="+" ref_description="SGN-E288363 [cLES-16-I1]">
      <seq>tgagaacgcatagaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagaggaagaatagagccaataaaatacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgctggtgatagtttctttaagccaaatgcagagaacgttttccatgttatttatgtttatctggctactcatgcagaatcctttcaattttggttgagtcactcaaattatatttgcatgtttatgtgttagtactcagaaacttagtgaatttgggagtgtaccgtcattctcaacattctccttattttataatcaccattttaagtgctgcgacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51056" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51356" g_stop="51398" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="130" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52861" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="391" r_length="261" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E288363" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51356" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAA</genome_strand>
        <mrna_strand>TGAGAACGCATAGAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAATAAAATACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTTCTTTAAGCCAAATGCAGAGAACGTTTTCCATGTTATTTATGTTTATCTGGCTACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTCATTCTCAACATTCTCCTTATTTTATAATCACCATTTTAAGTGCTGCGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597221" ref_strand="+" ref_description="SGN-E597221 [40720]">
      <seq>gaaatatgagccaaagtacaggctgatcaggaatggattagacacaaaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctacacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51068" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51368" g_stop="51398" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52407" g_stop="52493" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="118" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52601" g_stop="52779" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="295" r_length="177" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="306"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E597221" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51368" e_stop="51398"/>
          <exon e_start="52407" e_stop="52493"/>
          <exon e_start="52601" e_stop="52779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATGAGCCAAAGTACAGGCTGATCAGGGTAAGAATCATTTCAGTGTTTTATTTTTTGCGTAGAATTCATCAAGTGAAGAAAGTCGTGTGATACCAATATTCCTTAATAAACTCATGTTTTATAAGTTCTGTAGATGGTAAGGAACTAATGTTCGCTTCATGGTTTATCATCTTTTGAATGGTTTTTGTAGTTTTAGTATCGTATCTTTAGACATGGTTTAGAATTTCACTTTGTTAACTTCAGTCTTTAAGCGATTATATGGAAACTATAGAAACAATCTTTCTTGTTTCTGAGGATTTATTTTTGCTAAGAGTTGCGATGGGTGCAAAGGTCTTACATCTAGTTCATCTCTTTGCTCCTTTTTTGTTATTTGTGCACAAACCATATTTTAGAGGAATTTGTAGCAAAAAATTATTGCATGGTATCTGTCAATTCAAATATCTTTATTCTAGATGAAGTTCAGTAAAATGTGCTTACAAGAAAAGATTAGATGGTAGTACAAGACTCGCATGTGCAGTTTCATCATTTCAGAAGTTGAGTGTCTTCCACAACTACGCTTAAATTATCCTTCTGTTCTTTTGATATCGAAAAGTAATTGCAAGCTGTAGGTCTACATTACTTTGAGTGCTGCTGTTGAAAAGACTGTTTGTTTGAGCTATGTTGTATTAAAGGCTATTAGACCATAAAGACGTTTGGTTCTATACCTAATCTCTTCCTCTTCCTCCGGTCTTACTTAGTAACATCTCTTCCTCCTGTCCTTCTCTTGCTCATTCAGTTGATTCTGGTTTTGTGTTGCATTTGTTGGTGTTGCTTTTTCTTTTGTATGTTTGTATCAGTGATCTGTTTTTAGTATTCTAGCTGTGCTAATTCAAGCACTCATCTTTAAGTAAAGTAGATGGTTGAGTTTATTGCTCCATTATGTTGAATGCACCTTCACTGTCGTCAGTGTTAAATTTGTGGGCTTAATGATTGAATTCGGCTATAATTTTTGTTGTGGCTAAAATAATTTGTATGACTATTGAAAAACACTTGCAGAATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTA</genome_strand>
        <mrna_strand>GAAATATGAGCCAAAGTACAGGCTGATCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605256" ref_strand="+" ref_description="SGN-E605256 [21171]">
      <seq>caaggttgagaaatctaggaagcagatgaaggagcggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctacacttagtgaatttgtgagtgtagcgtttttctcaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52122" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52421" g_stop="52493" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52601" g_stop="52810" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="281" r_length="208" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="282" polyA_stop="292"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E605256" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52421" e_stop="52493"/>
          <exon e_start="52601" e_stop="52810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAC</genome_strand>
        <mrna_strand>CAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGCGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTACACTTAGTGAATTTGTGAGTGTAGCGTTTTTCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403288" ref_strand="+" ref_description="SGN-E403288 [PPC-10-M9]">
      <seq>cggaagaatagagccaagaaagtacgcggtgtcaagaagactaaggcaggagatgccaagaagaaatgatctgccagtgatagttcctttaagccaaatgctgaaaacgttttccatattatttatgtttctctggacatttatgcagaatcttttcaattttggttgtcactcaaattatatttgcatgtttatgtgctagtacttctaaacttagtgaatttgggagtgtagcgtttttctcaacatgttctttattttataatcaccatttcaagtgttgctacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52156" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52455" g_stop="52493" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52601" g_stop="52860" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="297" r_length="258" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E403288" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52455" e_stop="52493"/>
          <exon e_start="52601" e_stop="52860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAGGTAATGATTTTTATTTTTGCATTTCCAGCTACAACATTGAGAGGTTCTTTTGATTTTGGTTCATTTATTTTATTCTTGTGCTGATGCTGGTTGCTAAATTTTTGCAGACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATA</genome_strand>
        <mrna_strand>CGGAAGAATAGAGCCAAGAAAGTACGCGGTGTCAAGAAG...........................................................................................................ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCCAGTGATAGTTCCTTTAAGCCAAATGCTGAAAACGTTTTCCATATTATTTATGTTTCTCTGGACATTTATGCAGAATCTTTTCAATTTTGGTT--GTCACTCAAATTATATTTGCATGTTTATGTGCTAGTACTTCTAAACTTAGTGAATTTGGGAGTGTAGCGTTTTTCTCAACATGTTCTTTATTTTATAATCACCATTTCAAGTGTTGCTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375378" ref_strand="+" ref_description="SGN-E375378 [TUS-15-D20](-)">
      <seq>tcacggtgcccaaaggggaggaggaagacgacggcgatatcgtccgagcaggtggttttgttctcgtacaataatcctcttttgtctcactcgattgtttttccaagttttagtttttttttagttaattgtggctggtcctgccaatgggatataatttgaatgtttgaattgaatgttagtttctctttaaatgtatatatgatcatacatagttttcaatttatgtgttaatgttagtaggcactttattttgacttgttgcaattagaaagcaggtttccaagaaaattttacaaccaacaacaaattaatgactcttgttgcttttcaagtaactaactagttggccaccccagaagaagctttttgtaaaaccttgtcttttaatttattgagtttatagttcctcattcttagtctctttaggctgtacaatagctggattgtgtttcccgttcatacattattgaaataaaaaggatacccagcagcatattttaccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54436" stop="53330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54136" g_stop="53631" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="532"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E375378" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54136" e_stop="53631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAGCAGGTGGTTTTGTTCTCGTACAATAATCCTCTTTTGTCTCACTCGATTGTTTTTCCAAGTTTTAGTTTTTTTTTAGTTAATTGTGGCTGGTCCTGCCAATGGGATATAATTTGAATGTTTGAATTGAATGTTAGTTTCTCTTTAGATGTATATATGATCATACATAGTTTTCAATTTATGTGTTAATGTTAGTAGGCACTTTATTTTGACTTGTTGCAATTAGAAAGCAGGTTTCCAAGAAAATTTTACAACCAACAACAAATTAATGACTCTTGTTGCTTTTCAAGTAACTAACTAGTTGGCCACCCCAGAAGAAGCTTTTTGTAAAACCTTGTCTTTTAATTTATTGAGTTTATAGTTCCTCATTCTTAGTCTCTTTAGGCTGTACAATAGCTGGATTGTGTTTCCCGTTCATACATTATTGAAATAAAAAGGATACCCAGCAGCATATTTTACCA</genome_strand>
        <mrna_strand>TCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAGCAGGTGGTTTTGTTCTCGTACAATAATCCTCTTTTGTCTCACTCGATTGTTTTTCCAAGTTTTAGTTTTTTTTTAGTTAATTGTGGCTGGTCCTGCCAATGGGATATAATTTGAATGTTTGAATTGAATGTTAGTTTCTCTTTAAATGTATATATGATCATACATAGTTTTCAATTTATGTGTTAATGTTAGTAGGCACTTTATTTTGACTTGTTGCAATTAGAAAGCAGGTTTCCAAGAAAATTTTACAACCAACAACAAATTAATGACTCTTGTTGCTTTTCAAGTAACTAACTAGTTGGCCACCCCAGAAGAAGCTTTTTGTAAAACCTTGTCTTTTAATTTATTGAGTTTATAGTTCCTCATTCTTAGTCTCTTTAGGCTGTACAATAGCTGGATTGTGTTTCCCGTTCATACATTATTGAAATAAAAAGGATACCCAGCAGCATATTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379493" ref_strand="+" ref_description="SGN-E379493 [TUS-1-F8](-)">
      <seq>cttttcattccgattctgatgtttcaatccacgaaacttctgattcgttgcgatttgtcatcccaacagatgatgtcggcgataatattagagctcacatagttgagatctatccgggtgttactaagattgttatccgagctgataacgtttttgattcttcattggacctcgacttgtggcgatttcggcttccggccacaactctgccggaactggctagtgcccgttttagtgacggtgaattggtggtcacggtgcccaaaggggaggaggaagacgacggcgatatcgtccgagccaggtggttttgttctcgtacaataatcctcttttgtctcactcgattgtttttcccaagttttagtttttttttagttaattgtggctggtcctgccaatgggatataatttgaatgtttgaattgaatgttagtttctctttagatgtatatatgatcatacatagttttcaatttatgtgttaatgttagtaggcactttattttgacttgttgcaattagaaagcaggtttccaagaaaattttacaaccaacaacaaattaatgactcttgttgcttttcaagtaactaactagttggccaccccagaagaagctttttgtaaaaccttgtcttttaatttattgagtttatagttcctcattcttagtctctttaggcagtacaatagctggattgtttccccgttcaggcattatgaaataaaaaggataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54688" stop="53348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54388" g_stop="53648" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E379493" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54388" e_stop="53648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTATCCGGGTGTTACTAAGATTGTTATCCGAGCTGATAACGTTTTTGATTCTTCATTGGACCTCGACTTGTGGCGATTTCGGCTTCCGGCCACAACTCTGCCGGAACTGGCTAGTGCCCGTTTTAGTGACGGTGAATTGGTGGTCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAG-CAGGTGGTTTTGTTCTCGTACAATAATCCTCTTTTGTCTCACTCGATTGTTTTT-CCAAGTTTTAGTTTTTTTTTAGTTAATTGTGGCTGGTCCTGCCAATGGGATATAATTTGAATGTTTGAATTGAATGTTAGTTTCTCTTTAGATGTATATATGATCATACATAGTTTTCAATTTATGTGTTAATGTTAGTAGGCACTTTATTTTGACTTGTTGCAATTAGAAAGCAGGTTTCCAAGAAAATTTTACAACCAACAACAAATTAATGACTCTTGTTGCTTTTCAAGTAACTAACTAGTTGGCCACCCCAGAAGAAGCTTTTTGTAAAACCTTGTCTTTTAATTTATTGAGTTTATAGTTCCTCATTCTTAGTCTCTTTAGGCTGTACAATAGCTGGATTGTGTTTCCCGTTCATACATTATTGAAATAAAAAGGATACCC</genome_strand>
        <mrna_strand>CTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTATCCGGGTGTTACTAAGATTGTTATCCGAGCTGATAACGTTTTTGATTCTTCATTGGACCTCGACTTGTGGCGATTTCGGCTTCCGGCCACAACTCTGCCGGAACTGGCTAGTGCCCGTTTTAGTGACGGTGAATTGGTGGTCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAGCCAGGTGGTTTTGTTCTCGTACAATAATCCTCTTTTGTCTCACTCGATTGTTTTTCCCAAGTTTTAGTTTTTTTTTAGTTAATTGTGGCTGGTCCTGCCAATGGGATATAATTTGAATGTTTGAATTGAATGTTAGTTTCTCTTTAGATGTATATATGATCATACATAGTTTTCAATTTATGTGTTAATGTTAGTAGGCACTTTATTTTGACTTGTTGCAATTAGAAAGCAGGTTTCCAAGAAAATTTTACAACCAACAACAAATTAATGACTCTTGTTGCTTTTCAAGTAACTAACTAGTTGGCCACCCCAGAAGAAGCTTTTTGTAAAACCTTGTCTTTTAATTTATTGAGTTTATAGTTCCTCATTCTTAGTCTCTTTAGGCAGTACAATAGCTGGATTGT-TTCCCCGTTCAGGCATTA-TGAAATAAAAAGGATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375379" ref_strand="+" ref_description="SGN-E375379 [TUS-15-D20]">
      <seq>caggattcccactacagttgagtcctataactctctctctctctgcgcacaactatttcggttcgggtttaattctttcaccatgaaggttcatccagtaacaagtaacgttttgtctccggctaacggctcagtttgccggaaaaagaagctccggagactacctcatatttttgccaaggttctagaacttccttttcattccgattctgatgtttcaatccacgaaacttctgattcgttgcgatttgtcatcccaacagatgatgtcggcgataatattagagctcacatagttgagatctatccgggtgttactaagattgttatccgagctgataacgtttttgattcttcattggacctcgacttgtggcgatttcggcttccggccacaactctgccggaactggctagtgcccgttttagtgacggtgaattggtggtcacggtgcccaaaggggaggaggaagacgacggcgatatcgtccgagcaggtggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54882" stop="53778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54582" g_stop="54078" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E375379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54582" e_stop="54078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTCCCACTACAGTTGAGTCCTATAACTCTCTCTCTCTCTGCGCACAACTATTTCGGTTCGGGTTTAATTCTTTCACCATGAAGGTTCATCCAGTAACAAGTAACGTTTTGTCTCCGGCTAACGGCTCAGTTTGCCGGAAAAAGAAGCTCCGGAGACTACCTCATATTTTTGCCAAGGTTCTAGAACTTCCTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTATCCGGGTGTTACTAAGATTGTTATCCGAGCTGATAACGTTTTTGATTCTTCATTGGACCTCGACTTGTGGCGATTTCGGCTTCCGGCCACAACTCTGCCGGAACTGGCTAGTGCCCGTTTTAGTGACGGTGAATTGGTGGTCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAGCAGGTGGTTTT</genome_strand>
        <mrna_strand>CAGGATTCCCACTACAGTTGAGTCCTATAACTCTCTCTCTCTCTGCGCACAACTATTTCGGTTCGGGTTTAATTCTTTCACCATGAAGGTTCATCCAGTAACAAGTAACGTTTTGTCTCCGGCTAACGGCTCAGTTTGCCGGAAAAAGAAGCTCCGGAGACTACCTCATATTTTTGCCAAGGTTCTAGAACTTCCTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTATCCGGGTGTTACTAAGATTGTTATCCGAGCTGATAACGTTTTTGATTCTTCATTGGACCTCGACTTGTGGCGATTTCGGCTTCCGGCCACAACTCTGCCGGAACTGGCTAGTGCCCGTTTTAGTGACGGTGAATTGGTGGTCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAGCAGGTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204180" ref_strand="+" ref_description="SGN-E204180 [cLEC-13-C2]">
      <seq>caggattcccactacagttgagtcctataactctctctctctctgcgcacaactatttcggttcgggtttaattctttcaccatgaaggttcatccagtaacaagtaacgttttgtctccggctaacggctcagtttgccggaaaaagaagctccggagactacctcatatttttgccaaggttctagaacttccttttcattccgattctgatgtttcaatccacgaaacttctgattcgttgcgatttgtcatcccaacagatgatgtcggcgataatattagagctcacatagttgagatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54882" stop="53977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54582" g_stop="54277" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E204180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54582" e_stop="54277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTCCCACTACAGTTGAGTCCTATAACTCTCTCTCTCTCTGCGCACAACTATTTCGGTTCGGGTTTAATTCTTTCACCATGAAGGTTCATCCAGTAACAAGTAACGTTTTGTCTCCGGCTAACGGCTCAGTTTGCCGGAAAAAGAAGCTCCGGAGACTACCTCATATTTTTGCCAAGGTTCTAGAACTTCCTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTA</genome_strand>
        <mrna_strand>CAGGATTCCCACTACAGTTGAGTCCTATAACTCTCTCTCTCTCTGCGCACAACTATTTCGGTTCGGGTTTAATTCTTTCACCATGAAGGTTCATCCAGTAACAAGTAACGTTTTGTCTCCGGCTAACGGCTCAGTTTGCCGGAAAAAGAAGCTCCGGAGACTACCTCATATTTTTGCCAAGGTTCTAGAACTTCCTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422998" ref_strand="-" ref_description="SGN-E422998 [STM-41-I6]">
      <seq>gaagctcaatgacatcattaatgatattagacgccaaaggtgtaactatctccgcttaaaattatgcaaaaagggagattcatcaggcatgttatttctctcgcacatggtagaagacaagacacaaaatggactttcatatgtcgagtttctagtacatatccatcgacatattcaaaataaaatggcttgagaaaatatccagttttgttcatgaattttgattatagagaaggggggtacatatgttttcagtatgaagagatgcaaatgagctatccaggtgtggcccccatccatggcttcagagctatcttagtttttttgaggtgcagcgcatactcaaaatgaacggacaaaaagtaaaatttttatgtattttcacagtgatagtgttatttattctgattatttttcttgacgtgaaaatgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57168" stop="55829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56815" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56814" i_stop="56674" i_length="141">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56673" g_stop="56642" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="86" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56641" i_stop="56484" i_length="158">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56483" g_stop="56129" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="435" r_length="349" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E422998" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422998" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56815"/>
          <exon e_start="56673" e_stop="56642"/>
          <exon e_start="56483" e_stop="56129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCAACGACATCATTAATGATATTAGACGCCAAAGGTGTAACTATCTCCGGTATGATTCTTCTTTTTCTGTGTATTTGCTCCTACCTTTTAGGAGATGGTTCATCAATTACATTTCATTACTTAATGAATACAATGTGATGGGCACAAAATATGTCTAATTTCTGATATATTATCAATTTGATCTTGGCAGCTTAAAATTATGCAAAAAGGGAGATTCATCAGGTTTGTATCCAGTAACATATTTTTGCACTTCTATCCCCAATCTTAACATACATAAATTATTGGTCATTTTAAATCAATTTAACATTCTCCCTGCTCTTAGCTGCTTAGTGTTAACACTTGATATGAAATCTTGCAATGACCATGAATCTCTTTTTCAGGCATGTTATTTCTCTCGCACATGGTAGAAGACAAGACACAAAATGGGCTTTCATATGTCGAGTTTCTAGTACATATCCATCGACATATTCAAAATAAAATGGCTTGAGAAAATATCCAGTTTTGTTCATGAATTTTGATTATAGAGAAGGGGGGGGGGGGGTACAGATGTTTTCAGTATGAAGAGATGCAGATGAGCTTTCCAGGTGTGG-CCCCATCCATGGCTTCAGAGCTATCTTAGTTTTTTTGAGGTGCAGCGCATACTCAAAATGAACGGACAAAAAGTAATGTTTTTATGTATTTTCACAGTGATAGTGTTATTTATTATGATTATTTTTCTTGACGTGAAAATGTAGA</genome_strand>
        <mrna_strand>GAAGCTCAATGACATCATTAATGATATTAGACGCCAAAGGTGTAACTATCTCCG.............................................................................................................................................CTTAAAATTATGCAAAAAGGGAGATTCATCAG..............................................................................................................................................................GCATGTTATTTCTCTCGCACATGGTAGAAGACAAGACACAAAATGGACTTTCATATGTCGAGTTTCTAGTACATATCCATCGACATATTCAAAATAAAATGGCTTGAGAAAATATCCAGTTTTGTTCATGAATTTTGATTATAGAGAA-------GGGGGGTACATATGTTTTCAGTATGAAGAGATGCAAATGAGCTATCCAGGTGTGGCCCCCATCCATGGCTTCAGAGCTATCTTAGTTTTTTTGAGGTGCAGCGCATACTCAAAATGAACGGACAAAAAGTAAAATTTTTATGTATTTTCACAGTGATAGTGTTATTTATTCTGATTATTTTTCTTGACGTGAAAATGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597707" ref_strand="-" ref_description="SGN-E597707 [67578]">
      <seq>aacggcgaggactgtttgatatatgttgggaactctgcggatcctaatgttatccatcagctgctaggcatttcatctgttgacgaaattcctgctcagtttgttctgcagcagtatgacaatccactctctaagaagcctcaatgacatcattaatgatattagacgccaaaggtgtaactatctccgcttaaaattatgcaaaaagggagattcatcaggcatgttatttctctcgcacatgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57765" stop="56161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57465" g_stop="57367" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57366" i_stop="56904" i_length="463">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56903" g_stop="56815" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56814" i_stop="56674" i_length="141">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56673" g_stop="56642" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="221" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56641" i_stop="56484" i_length="158">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56483" g_stop="56457" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="248" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E597707" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597707" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57465" e_stop="57367"/>
          <exon e_start="56903" e_stop="56815"/>
          <exon e_start="56673" e_stop="56642"/>
          <exon e_start="56483" e_stop="56457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTGAGGACTGTTTGATATATGTTGGGAACTCTGCAGATCCTAATGTTATCCGTCAGCTGCTAGGCATTTCATCTGTCGAGGAAATTCCTGCTCAGGTAATTTTACATGTCTTCTGCTGTTGATTGGTGATATTTTTCCAAATGTATAAGTAGGTAAAAGATGGAAACACATTCTTACCACCCTTCTTACTAGGATTCTCATTTGATACATGTGGCTGAAACGTACATTTAATTTGTATTGATTGTTTTTGAATGGCTTTGGTTAAATTGTACAAATCCATGGTGGTCAGATGTGTCAGGCAGGTACTTTTGTCGCAAGCCAAAGTATGAGGCTTGCATTCAAACCACCTATATCCTGTTTGATGGGTTGTGCAATTTTATTCAACAGTCATCTTAAAAGTAACCTGTATTTTTTCTTATACCTTAGGCTCTTGGGTTCGTTAGGTTCTTGATTGACAAAACGGTCAAACGTTCCTCTTTTTCCATTGGTGAAGCTAAGAAATTACTTATTCTAATTTAGCTCCTCTTGCATAGATTCTGAATTTCCCTTTTCTCTCAGTTTGTCCTGCAGCAGTATGACAATCCACTCTCTAAGAAG-CTCAACGACATCATTAATGATATTAGACGCCAAAGGTGTAACTATCTCCGGTATGATTCTTCTTTTTCTGTGTATTTGCTCCTACCTTTTAGGAGATGGTTCATCAATTACATTTCATTACTTAATGAATACAATGTGATGGGCACAAAATATGTCTAATTTCTGATATATTATCAATTTGATCTTGGCAGCTTAAAATTATGCAAAAAGGGAGATTCATCAGGTTTGTATCCAGTAACATATTTTTGCACTTCTATCCCCAATCTTAACATACATAAATTATTGGTCATTTTAAATCAATTTAACATTCTCCCTGCTCTTAGCTGCTTAGTGTTAACACTTGATATGAAATCTTGCAATGACCATGAATCTCTTTTTCAGGCATGTTATTTCTCTCGCACATGGTAG</genome_strand>
        <mrna_strand>AACGGCGAGGACTGTTTGATATATGTTGGGAACTCTGCGGATCCTAATGTTATCCATCAGCTGCTAGGCATTTCATCTGTTGACGAAATTCCTGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCTGCAGCAGTATGACAATCCACTCTCTAAGAAGCCTCAATGACATCATTAATGATATTAGACGCCAAAGGTGTAACTATCTCCG.............................................................................................................................................CTTAAAATTATGCAAAAAGGGAGATTCATCAG..............................................................................................................................................................GCATGTTATTTCTCTCGCACATGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262024" ref_strand="+" ref_description="SGN-E262024 [cLEG-58-N7]">
      <seq>attctgtgcgacagtgtcatcctcagggcaacttatccttcctgaggcacttaaacttcttcctctttacacattggctttggttaaaagcactggacttagagcagatggacagatcgatagtaggtccttctggataaattatgtttccccactctctactccattggcaatccctctggtctaccctagattgatagcaattcatgaatttgatactaaggagaatgatgattctcttattcccccttctattccactttccagtgaacacattactgacaatggtatctatcttctcgagaacggtgaggactgtttgatatatgttgggaactctgcagatcctaatgttatccgtcagctgctaggcatttcatctgtcgaggaaattcctgctcagtttgtcctgcagcagtatgacaatccactctctaagaagctcaacgacatccttaatgatattagacgcccaaggtgtaactatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60031" stop="56517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59731" g_stop="59655" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="57840" i_length="1815">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57839" g_stop="57694" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="223" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57693" i_stop="57547" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57546" g_stop="57367" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="403" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57366" i_stop="56904" i_length="463">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56903" g_stop="56817" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="490" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E262024" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59731" e_stop="59655"/>
          <exon e_start="57839" e_stop="57694"/>
          <exon e_start="57546" e_stop="57367"/>
          <exon e_start="56903" e_stop="56817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTGCGACAGTGTCATCCTCAGGGCAACTTATCCTTCCTGAGGCACTTAAACTTCTTCCTCTTTACACATTGGGTATATCCTGCCTTCCTTTTTACAAGCCTTTTATTTCCAAATGTTTTGACAGTGATAGTTTTGTATATGCAGTGCAATTTTAAAAGCATTTTATTGCATTATTTCATTTTCTTTTCCATTTTATGTATTTAAGTTGACATATTGATCAAAATGCCTATTAACTTTTTCTTCCTCTATGTTCCACCTTGGTTTCCTTTTGTTGCTATTCTAAGATTGTAACTCAATGTATTTTATGAGTTGAATTATTCAGTGTATTATATGAGTTGAGTTAATGTAAATGATATGAAGGAAACTAGTGCCAAGTAAAACTAAATGAATGATCATCCATTCTTAGTATGTGCATTTTAGCTTCCGAATGCTTCCTACTGATAGTGCATATTGAATGACCGTCTCTGATTTTCTTTGTCACTACAAAGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGTCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTACAAAGTACTTCTTGTGCAATCAATTATGTAAAAGCTATATTCTTATGAGTTTTCTTAATATTTCAGCTTTGGTTAAAAGCACTGGACTTAGAGCAGATGGACAGATCGATAGTAGGTCCTTCTGGATAAATTATGTTTCCCCACTCTCTACTCCATTGGCAATCCCTCTGGTCTACCCTAGATTGATAGCAATTCATGAATTTGATACTAAGGTAAGTACTTGTATTTATGGATTTTGTTTCTATTCTTTCTTTTGTTTTTCTAAGTCAAGTTGGTAGTTCGATTCATTTTCTTGATTCCCTTTAAACATTATTTTCGGATTACATTTCTTACATTTCATTCTGTATTTGAATTTGTAGGAGAATGATGATTCTCTTATTCCCCCTTCTATTCCACTTTCCAGTGAACACATTACTGACAATGGTATCTATCTTCTCGAGAACGGTGAGGACTGTTTGATATATGTTGGGAACTCTGCAGATCCTAATGTTATCCGTCAGCTGCTAGGCATTTCATCTGTCGAGGAAATTCCTGCTCAGGTAATTTTACATGTCTTCTGCTGTTGATTGGTGATATTTTTCCAAATGTATAAGTAGGTAAAAGATGGAAACACATTCTTACCACCCTTCTTACTAGGATTCTCATTTGATACATGTGGCTGAAACGTACATTTAATTTGTATTGATTGTTTTTGAATGGCTTTGGTTAAATTGTACAAATCCATGGTGGTCAGATGTGTCAGGCAGGTACTTTTGTCGCAAGCCAAAGTATGAGGCTTGCATTCAAACCACCTATATCCTGTTTGATGGGTTGTGCAATTTTATTCAACAGTCATCTTAAAAGTAACCTGTATTTTTTCTTATACCTTAGGCTCTTGGGTTCGTTAGGTTCTTGATTGACAAAACGGTCAAACGTTCCTCTTTTTCCATTGGTGAAGCTAAGAAATTACTTATTCTAATTTAGCTCCTCTTGCATAGATTCTGAATTTCCCTTTTCTCTCAGTTTGTCCTGCAGCAGTATGACAATCCACTCTCTAAGAAGCTCAACGACATCATTAATGATATTAGACGCCAAAGGTGTAACTATCTC</genome_strand>
        <mrna_strand>ATTCTGTGCGACAGTGTCATCCTCAGGGCAACTTATCCTTCCTGAGGCACTTAAACTTCTTCCTCTTTACACATTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTTAAAAGCACTGGACTTAGAGCAGATGGACAGATCGATAGTAGGTCCTTCTGGATAAATTATGTTTCCCCACTCTCTACTCCATTGGCAATCCCTCTGGTCTACCCTAGATTGATAGCAATTCATGAATTTGATACTAAG...................................................................................................................................................GAGAATGATGATTCTCTTATTCCCCCTTCTATTCCACTTTCCAGTGAACACATTACTGACAATGGTATCTATCTTCTCGAGAACGGTGAGGACTGTTTGATATATGTTGGGAACTCTGCAGATCCTAATGTTATCCGTCAGCTGCTAGGCATTTCATCTGTCGAGGAAATTCCTGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCTGCAGCAGTATGACAATCCACTCTCTAAGAAGCTCAACGACATCCTTAATGATATTAGACGCCCAAGGTGTAACTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344007" ref_strand="+" ref_description="SGN-E344007 [cTOF-12-O2]">
      <seq>acaatggctattgagtttgcggagtatcaggtctgtgttgacgtgtttctcacaacacaatcttatgtagacattgcctccatctcggtcattcctaggacgactggtgggcaggtgtactactatttccctttctctgctcttgctgatactgccaagctatacaatgatcttcgatggaatatcactaggccccaagggtttgaggcagtaatgcgtgtaagatgtagtcagggccttcaagttcaagagtattctggaaattactgtaaaagaattcctacagatgttgatctacctgcgattgactgtgacaaaacaattatggttacattgaaacatgatgacaaattgcaggatggttcagaatgttcttttcagtctgctgttctttacactaccattgatggccaaagaagaatccgagtgtcaactttggctctgccttgcacaactatgttgagtaatctatttcgatcagctgacttggacacccagtttgcttgcatcttaaagcaagctgccagtgaagtaccaactgctcctctctcacggataagagaacaagtgacaaacctttgcatcaatattctgcactcttaccgtaaattctgtgcgacagtgtcatcctcagggcaacttatccttcctgaggcacttaaacttcttcctctttaacattggcttttggttaaaagcactggacttagagcagatggacagatcgatagtaggtccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62366" stop="57483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62066" g_stop="62037" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62036" i_stop="61910" i_length="127">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61909" g_stop="61826" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="114" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61825" i_stop="61653" i_length="173">
            <donor d_prob="0.519" d_score="1.00"/>
            <acceptor a_prob="0.598" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61652" g_stop="61533" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="234" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61532" i_stop="61437" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61436" g_stop="61368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="303" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61367" i_stop="60828" i_length="540">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60827" g_stop="60750" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="381" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60749" i_stop="60583" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60582" g_stop="60444" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="520" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60443" i_stop="59820" i_length="624">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59819" g_stop="59655" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="684" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59654" i_stop="57840" i_length="1815">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57839" g_stop="57783" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="742" r_length="58" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E344007" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62066" e_stop="62037"/>
          <exon e_start="61909" e_stop="61826"/>
          <exon e_start="61652" e_stop="61533"/>
          <exon e_start="61436" e_stop="61368"/>
          <exon e_start="60827" e_stop="60750"/>
          <exon e_start="60582" e_stop="60444"/>
          <exon e_start="59819" e_stop="59655"/>
          <exon e_start="57839" e_stop="57783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCTATTGAGTTTGCGGAGTATCAGGTTAGTTTATCTGAAAAGCCTGTGGATGTATGATTTATTTAAGGACAAACAGGATGTTAAGAACCTGTTTTGGTCTTCTTATATTTATAATTGTTAACATCAATTGATTAGATTTCAACTGCTTCAGGTCTGTGTTGACGTGTTTCTCACAACACAATCTTATGTAGACATTGCCTCCATCTCGGTCATTCCTAGGACGACTGGTGGGCAGGTAACTGTGACGCTTGCTACTATTTTAGCTTGTCTCCCCTAGGGCCTCGGTTATGATGCACTAACTGTTCATGGAATTTATGAACAATCTTATTATGCAGCTTACTGTACATGTTCCCTCTTGATATTGTTACATCTAGGGTTGAGTCTTAAAGATGTTTTTGCTTCTGTCAGGTGTACTACTATTTCCCTTTCTCTGCTCTTGCTGATACTGCCAAGCTATACAATGATCTTCGATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAAGATGTAGTCAGGTATGCTCCCCAATTTTCGGGTCTTCCTTCTCTTTTCTTATAGGTACCATACCGGAAAGTTGAAGAACACTCATGCTGACCGTGTTCCATTTGCAGGGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCTACAGATGTTGATCTACCTGCGGTTCGTCCCCTCTCCCCCCCCCCCCCCCCCCCAAGTTAGAAGCATCTACAGCACATTTCTTTGGCTAATACCAAATCTGGTGACATGTTTCATTACTTGTTTATAATATATGTTTTTATCCAGCATTTTTTCATATCAAGATGAAGCTTTTAAGTCATATTTTCAGATTGTCCATGGTCAAAATACCCAAATGTTTTGGGAGAACCTTATGAGTTGAAATTTGTCTCTAAAGGGCTTACGTTAATCTAAAAATCACATGTGTCGGTAAGGGATTTTAGTTCATGTTTTGAATGGAGACTATACTAGCATGGTTTTTTCTGTATGCATGTTTACACTGTTAATTCACCTTTTCCTGTGTGAATACTTGCTCTCAAAAAGTTTTCACACTGTTGTCCTTGTTGAAAGTGCTGGTTTGACAGACTTATGAATAAGGTTTGTTCATTTCTAAGTGTGCTTTCCCTTATGCAGATTGACCATGACAAAACAATTATGGTTACATTGAAACATGATTAATAAGGCGTGTTGCTTTCCCTTGTGCAGATTGACTGTGACAAAACAATTATGGTTACATTGAAACATGATGACAAATTGCAGGATGGTTCAGAATGTTCTTTTCAGGTACAAATTTATTTGAGTCTTCAGCAATGAGTTTTTGGTCAATCATTTTTGCCGTGTTTCTGTATGTCTAATTTTCCCTGCTGCTGCTGCTTCCACCTTTTTTACTTTTTTCTTCCCTGGTGCAATATGCTGGCCCCATTTACAAGAGATTGTTTCTGTGTTTCCAGTCTGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTATTTCGATCAGCTGACTTGGACACCCAGTTTGCTTGCATCTTAAAGCAAGGTAGAGGATACTATCTAATAATACACTGTGTCATATTCTTAAGTATAAGGATGACAGTTGCAGCCAAATCAGATATAAGATTGTGTATGGAGACATCGTACATGTCCATGGGTTAACATTGAATCTGATTGTTTCTGCAATGGTGCTCCTTTATAATTCCCGTAACTCTTGTTCTGCATATTTGGAACTGAATCTAGACAGAACTAACTTTGTGCTGATATTCTTTGCTGATGAAGAAGCTATATTTATCTCCCCTATCTCCTAAGATTAGCTGCACAAGATCCTGCATTGATGACCTTAACATCCTGCTTCTCTTTCAGTCTCTCGCTCTCTTTCAGAAGCAAATACTTTTGTTTTTTTTTCAATATTCCATCACACACACACTTGAAAGAAAAAAGATTCTCCTGGCCAGAAGCAAATATTTTGAAATTAGCTCTTTATAGCTTATTAATCGTGTTCTTGTGGTCGACATAATTACTATGACGAGTTGCCAAGTGGCCTGCTTGCTTTTGAAGTTTAATGTTATCTCATGCACTGTTGCTATTTCATTCTATTTTTCCCTTTTTCTCCTTGTTTATTATCTTAAAAGAGTAATCGTACTTATGGAATTTTTCGTGCATGCAGCTGCCAGTGAAGTACCAACTGCTCCTCTCTCACGGATAAGAGAACAAGTGACAAACCTTTGCATCAATATTCTGCACTCTTACCGTAAATTCTGTGCGACAGTGTCATCCTCAGGGCAACTTATCCTTCCTGAGGCACTTAAACTTCTTCCTCTTTACACATTGGGTATATCCTGCCTTCCTTTTTACAAGCCTTTTATTTCCAAATGTTTTGACAGTGATAGTTTTGTATATGCAGTGCAATTTTAAAAGCATTTTATTGCATTATTTCATTTTCTTTTCCATTTTATGTATTTAAGTTGACATATTGATCAAAATGCCTATTAACTTTTTCTTCCTCTATGTTCCACCTTGGTTTCCTTTTGTTGCTATTCTAAGATTGTAACTCAATGTATTTTATGAGTTGAATTATTCAGTGTATTATATGAGTTGAGTTAATGTAAATGATATGAAGGAAACTAGTGCCAAGTAAAACTAAATGAATGATCATCCATTCTTAGTATGTGCATTTTAGCTTCCGAATGCTTCCTACTGATAGTGCATATTGAATGACCGTCTCTGATTTTCTTTGTCACTACAAAGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGTCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTACAAAGTACTTCTTGTGCAATCAATTATGTAAAAGCTATATTCTTATGAGTTTTCTTAATATTTCAGC-TTTGGTTAAAAGCACTGGACTTAGAGCAGATGGACAGATCGATAGTAGGTCCTTCT</genome_strand>
        <mrna_strand>ACAATGGCTATTGAGTTTGCGGAGTATCAG...............................................................................................................................GTCTGTGTTGACGTGTTTCTCACAACACAATCTTATGTAGACATTGCCTCCATCTCGGTCATTCCTAGGACGACTGGTGGGCAG.............................................................................................................................................................................GTGTACTACTATTTCCCTTTCTCTGCTCTTGCTGATACTGCCAAGCTATACAATGATCTTCGATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAAGATGTAGTCAG................................................................................................GGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCTACAGATGTTGATCTACCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTGTGACAAAACAATTATGGTTACATTGAAACATGATGACAAATTGCAGGATGGTTCAGAATGTTCTTTTCAG.......................................................................................................................................................................TCTGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTATTTCGATCAGCTGACTTGGACACCCAGTTTGCTTGCATCTTAAAGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAGTGAAGTACCAACTGCTCCTCTCTCACGGATAAGAGAACAAGTGACAAACCTTTGCATCAATATTCTGCACTCTTACCGTAAATTCTGTGCGACAGTGTCATCCTCAGGGCAACTTATCCTTCCTGAGGCACTTAAACTTCTTCCTCTTTA-ACATTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTAAAAGCACTGGACTTAGAGCAGATGGACAGATCGATAGTAGGTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480715" ref_strand="+" ref_description="SGN-E480715 [cSTD-15-C5]">
      <seq>cctacctatacaatgatcttctatggaatatcactaggccccaagggtttgaggcagtaatgcgtgtaataagtattcagggccttcaagttcaagagtattctggaaattactgtaaaagaattccaacagatgttgatctacctgcgattgactgtgacaaaacaattatggtttcattgaaacatgatgacaaattgcacgatggttcaaaatgttcttttcagtcggctgttctttacactaccattgatggccaaagaagaatccgagtgtcaactttggctctgccttgcacaactatgttgagtaatctgtttcgatcagctgacttggacacccaatttgcttgcatcttaaagcaagctgcctgtgaagtaccaactgctactctctcacggataagacaacaagtgacaaacctttgcatcaatattctgcactcttaccgcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61912" stop="59429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61612" g_stop="61533" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61532" i_stop="61437" i_length="96">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61436" g_stop="61368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="149" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61367" i_stop="60828" i_length="540">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60827" g_stop="60750" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60749" i_stop="60583" i_length="167">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60582" g_stop="60444" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="366" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60443" i_stop="59820" i_length="624">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59819" g_stop="59729" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="457" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E480715" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61612" e_stop="61533"/>
          <exon e_start="61436" e_stop="61368"/>
          <exon e_start="60827" e_stop="60750"/>
          <exon e_start="60582" e_stop="60444"/>
          <exon e_start="59819" e_stop="59729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCTATACAATGATCTTCGATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAAGATGTAGTCAGGTATGCTCCCCAATTTTCGGGTCTTCCTTCTCTTTTCTTATAGGTACCATACCGGAAAGTTGAAGAACACTCATGCTGACCGTGTTCCATTTGCAGGGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCTACAGATGTTGATCTACCTGCGGTTCGTCCCCTCTCCCCCCCCCCCCCCCCCCCAAGTTAGAAGCATCTACAGCACATTTCTTTGGCTAATACCAAATCTGGTGACATGTTTCATTACTTGTTTATAATATATGTTTTTATCCAGCATTTTTTCATATCAAGATGAAGCTTTTAAGTCATATTTTCAGATTGTCCATGGTCAAAATACCCAAATGTTTTGGGAGAACCTTATGAGTTGAAATTTGTCTCTAAAGGGCTTACGTTAATCTAAAAATCACATGTGTCGGTAAGGGATTTTAGTTCATGTTTTGAATGGAGACTATACTAGCATGGTTTTTTCTGTATGCATGTTTACACTGTTAATTCACCTTTTCCTGTGTGAATACTTGCTCTCAAAAAGTTTTCACACTGTTGTCCTTGTTGAAAGTGCTGGTTTGACAGACTTATGAATAAGGTTTGTTCATTTCTAAGTGTGCTTTCCCTTATGCAGATTGACCATGACAAAACAATTATGGTTACATTGAAACATGATTAATAAGGCGTGTTGCTTTCCCTTGTGCAGATTGACTGTGACAAAACAATTATGGTTACATTGAAACATGATGACAAATTGCAGGATGGTTCAGAATGTTCTTTTCAGGTACAAATTTATTTGAGTCTTCAGCAATGAGTTTTTGGTCAATCATTTTTGCCGTGTTTCTGTATGTCTAATTTTCCCTGCTGCTGCTGCTTCCACCTTTTTTACTTTTTTCTTCCCTGGTGCAATATGCTGGCCCCATTTACAAGAGATTGTTTCTGTGTTTCCAGTCTGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTATTTCGATCAGCTGACTTGGACACCCAGTTTGCTTGCATCTTAAAGCAAGGTAGAGGATACTATCTAATAATACACTGTGTCATATTCTTAAGTATAAGGATGACAGTTGCAGCCAAATCAGATATAAGATTGTGTATGGAGACATCGTACATGTCCATGGGTTAACATTGAATCTGATTGTTTCTGCAATGGTGCTCCTTTATAATTCCCGTAACTCTTGTTCTGCATATTTGGAACTGAATCTAGACAGAACTAACTTTGTGCTGATATTCTTTGCTGATGAAGAAGCTATATTTATCTCCCCTATCTCCTAAGATTAGCTGCACAAGATCCTGCATTGATGACCTTAACATCCTGCTTCTCTTTCAGTCTCTCGCTCTCTTTCAGAAGCAAATACTTTTGTTTTTTTTTCAATATTCCATCACACACACACTTGAAAGAAAAAAGATTCTCCTGGCCAGAAGCAAATATTTTGAAATTAGCTCTTTATAGCTTATTAATCGTGTTCTTGTGGTCGACATAATTACTATGACGAGTTGCCAAGTGGCCTGCTTGCTTTTGAAGTTTAATGTTATCTCATGCACTGTTGCTATTTCATTCTATTTTTCCCTTTTTCTCCTTGTTTATTATCTTAAAAGAGTAATCGTACTTATGGAATTTTTCGTGCATGCAGCTGCCAGTGAAGTACCAACTGCTCCTCTCTCACGGATAAGAGAACAAGTGACAAACCTTTGCATCAATATTCTGCACTCTTACCGTAAATT</genome_strand>
        <mrna_strand>CCTACCTATACAATGATCTTCTATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAATAAGTATTCAG................................................................................................GGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCAACAGATGTTGATCTACCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTGTGACAAAACAATTATGGTTTCATTGAAACATGATGACAAATTGCACGATGGTTCAAAATGTTCTTTTCAG.......................................................................................................................................................................TCGGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTGTTTCGATCAGCTGACTTGGACACCCAATTTGCTTGCATCTTAAAGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTGTGAAGTACCAACTGCTACTCTCTCACGGATAAGACAACAAGTGACAAACCTTTGCATCAATATTCTGCACTCTTACCGCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329672" ref_strand="+" ref_description="SGN-E329672 [cTOD-3-L13]">
      <seq>tcacaacacaatcttatgtagacattgcctccatctcggtcattcctaggacgactggtgggcaggtgtactactatttccctttctctgctcttgctgatactgccaagctatacaatgatcttcgatggaatatcactaggccccaagggtttgaggcagtaatgcgtgtaagatgtagtcagggccttcaagttcaagagtattctggaaattactgtaaaagaattcctacagatgttgatctacctgcgattgactgtgacaaaacaattatggttacattgaaacatgatgacaaattgcaggatggttcagaatgttcttttcagtctgctgttctttacactaccattgatggccaaagaagaatccgagtgtcaactttggctctgccttgcacaactatgttgagtaatctatttcgatcagctgacttggacacccagtttgcttgcatcttaaagcaagctgccagtgaagtaccaactgctcctctctcacggataagagaacaagtgacaaacctttgcatcaatattctgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62190" stop="59441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61890" g_stop="61826" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61825" i_stop="61653" i_length="173">
            <donor d_prob="0.519" d_score="1.00"/>
            <acceptor a_prob="0.598" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61652" g_stop="61533" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="185" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61532" i_stop="61437" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61436" g_stop="61368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="254" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61367" i_stop="60828" i_length="540">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60827" g_stop="60750" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="332" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60749" i_stop="60583" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60582" g_stop="60444" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="471" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60443" i_stop="59820" i_length="624">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59819" g_stop="59741" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="550" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E329672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61890" e_stop="61826"/>
          <exon e_start="61652" e_stop="61533"/>
          <exon e_start="61436" e_stop="61368"/>
          <exon e_start="60827" e_stop="60750"/>
          <exon e_start="60582" e_stop="60444"/>
          <exon e_start="59819" e_stop="59741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACACAATCTTATGTAGACATTGCCTCCATCTCGGTCATTCCTAGGACGACTGGTGGGCAGGTAACTGTGACGCTTGCTACTATTTTAGCTTGTCTCCCCTAGGGCCTCGGTTATGATGCACTAACTGTTCATGGAATTTATGAACAATCTTATTATGCAGCTTACTGTACATGTTCCCTCTTGATATTGTTACATCTAGGGTTGAGTCTTAAAGATGTTTTTGCTTCTGTCAGGTGTACTACTATTTCCCTTTCTCTGCTCTTGCTGATACTGCCAAGCTATACAATGATCTTCGATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAAGATGTAGTCAGGTATGCTCCCCAATTTTCGGGTCTTCCTTCTCTTTTCTTATAGGTACCATACCGGAAAGTTGAAGAACACTCATGCTGACCGTGTTCCATTTGCAGGGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCTACAGATGTTGATCTACCTGCGGTTCGTCCCCTCTCCCCCCCCCCCCCCCCCCCAAGTTAGAAGCATCTACAGCACATTTCTTTGGCTAATACCAAATCTGGTGACATGTTTCATTACTTGTTTATAATATATGTTTTTATCCAGCATTTTTTCATATCAAGATGAAGCTTTTAAGTCATATTTTCAGATTGTCCATGGTCAAAATACCCAAATGTTTTGGGAGAACCTTATGAGTTGAAATTTGTCTCTAAAGGGCTTACGTTAATCTAAAAATCACATGTGTCGGTAAGGGATTTTAGTTCATGTTTTGAATGGAGACTATACTAGCATGGTTTTTTCTGTATGCATGTTTACACTGTTAATTCACCTTTTCCTGTGTGAATACTTGCTCTCAAAAAGTTTTCACACTGTTGTCCTTGTTGAAAGTGCTGGTTTGACAGACTTATGAATAAGGTTTGTTCATTTCTAAGTGTGCTTTCCCTTATGCAGATTGACCATGACAAAACAATTATGGTTACATTGAAACATGATTAATAAGGCGTGTTGCTTTCCCTTGTGCAGATTGACTGTGACAAAACAATTATGGTTACATTGAAACATGATGACAAATTGCAGGATGGTTCAGAATGTTCTTTTCAGGTACAAATTTATTTGAGTCTTCAGCAATGAGTTTTTGGTCAATCATTTTTGCCGTGTTTCTGTATGTCTAATTTTCCCTGCTGCTGCTGCTTCCACCTTTTTTACTTTTTTCTTCCCTGGTGCAATATGCTGGCCCCATTTACAAGAGATTGTTTCTGTGTTTCCAGTCTGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTATTTCGATCAGCTGACTTGGACACCCAGTTTGCTTGCATCTTAAAGCAAGGTAGAGGATACTATCTAATAATACACTGTGTCATATTCTTAAGTATAAGGATGACAGTTGCAGCCAAATCAGATATAAGATTGTGTATGGAGACATCGTACATGTCCATGGGTTAACATTGAATCTGATTGTTTCTGCAATGGTGCTCCTTTATAATTCCCGTAACTCTTGTTCTGCATATTTGGAACTGAATCTAGACAGAACTAACTTTGTGCTGATATTCTTTGCTGATGAAGAAGCTATATTTATCTCCCCTATCTCCTAAGATTAGCTGCACAAGATCCTGCATTGATGACCTTAACATCCTGCTTCTCTTTCAGTCTCTCGCTCTCTTTCAGAAGCAAATACTTTTGTTTTTTTTTCAATATTCCATCACACACACACTTGAAAGAAAAAAGATTCTCCTGGCCAGAAGCAAATATTTTGAAATTAGCTCTTTATAGCTTATTAATCGTGTTCTTGTGGTCGACATAATTACTATGACGAGTTGCCAAGTGGCCTGCTTGCTTTTGAAGTTTAATGTTATCTCATGCACTGTTGCTATTTCATTCTATTTTTCCCTTTTTCTCCTTGTTTATTATCTTAAAAGAGTAATCGTACTTATGGAATTTTTCGTGCATGCAGCTGCCAGTGAAGTACCAACTGCTCCTCTCTCACGGATAAGAGAACAAGTGACAAACCTTTGCATCAATATTCTGCACTC</genome_strand>
        <mrna_strand>TCACAACACAATCTTATGTAGACATTGCCTCCATCTCGGTCATTCCTAGGACGACTGGTGGGCAG.............................................................................................................................................................................GTGTACTACTATTTCCCTTTCTCTGCTCTTGCTGATACTGCCAAGCTATACAATGATCTTCGATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAAGATGTAGTCAG................................................................................................GGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCTACAGATGTTGATCTACCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACTGTGACAAAACAATTATGGTTACATTGAAACATGATGACAAATTGCAGGATGGTTCAGAATGTTCTTTTCAG.......................................................................................................................................................................TCTGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTATTTCGATCAGCTGACTTGGACACCCAGTTTGCTTGCATCTTAAAGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAGTGAAGTACCAACTGCTCCTCTCTCACGGATAAGAGAACAAGTGACAAACCTTTGCATCAATATTCTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407950" ref_strand="+" ref_description="SGN-E407950 [PPI-9-K20]">
      <seq>aggaaccgttgagtttgtcgctaccaaggaatatatggtgcgagatccgatgcccgctgtgtatttcttcctgatagacgtttccatgaatgccatacagactggtgcaactgcagctgcttgcagtgcgatcagccaagttatttctgatctccctgacggtcctcggacattggtcggagttgctacatttgactcaactatccacttctacaatctcaagcgtgcattgcagcagccattgatgcttatagtccctgatgtacaagacgtttataccccccttcagactgatgttattgtgcagctctcggagtgccgtcaacacctagagcttctgctagaaagcatcccaacaatgttccagaacaacaggactgctgattcagcttttggagctgcagtcaaggctgctttcttggcaatgaaaagcacaggaggcaaacttcttgtgtttcaatcagtcctgccatctactggtattggagccctttctgctagagaggctgaaggaagaaccaatgtatcagctgcagaaaaggaggccaacaagttgctccagccggctgacaaaactctgaagacaatggctattgagtttgcggagcatcaggtctgtgttgacgtgtttctcacaacacaatcttatgtagacattgcctncatctcggtcattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67388" stop="61544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67088" g_stop="67052" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67051" i_stop="66742" i_length="310">
            <donor d_prob="0.489" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66741" g_stop="66622" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="157" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66621" i_stop="65429" i_length="1193">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65428" g_stop="65348" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="238" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65347" i_stop="64585" i_length="763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64584" g_stop="64507" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="316" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64506" i_stop="64398" i_length="109">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64397" g_stop="64305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="409" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64304" i_stop="63597" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63596" g_stop="63542" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="464" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63541" i_stop="62990" i_length="552">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62989" g_stop="62913" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="541" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62912" i_stop="62109" i_length="804">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62108" g_stop="62037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="613" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62036" i_stop="61910" i_length="127">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61909" g_stop="61844" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="679" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E407950" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67088" e_stop="67052"/>
          <exon e_start="66741" e_stop="66622"/>
          <exon e_start="65428" e_stop="65348"/>
          <exon e_start="64584" e_stop="64507"/>
          <exon e_start="64397" e_stop="64305"/>
          <exon e_start="63596" e_stop="63542"/>
          <exon e_start="62989" e_stop="62913"/>
          <exon e_start="62108" e_stop="62037"/>
          <exon e_start="61909" e_stop="61844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACCGTTGAGTTTGTCGCTACCAAGGAGTATATGGTTGGTACCTTTTGGATACATTGGTTCAGGGATGTGATTGCATGACATTATAGGAGTAATGCAGTATTAAGTAGACATTCCGTGCTCTGAACTTTCAGTTCAGCTAGCTTTGGGCTTTCAAATTTACCATCTGAATTTGTTTGGGTATTTGGGGAAGCTAACCACAACAGAGTGGAACAAAAAAAAAATTATATTGCAATATCAAATAATTTGTAGATGCACTCCTTTCTTTGGTGTAGGGAATCCCTTAATTCGATTTTGTAACTTTTGGATTTTGCTGTAATAACTTGATATTTGTATCGTAATTCAGGTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCTGTAAGTCCTATAGTTTGTTTATGATGATGCAACATGCATTTTTGTACCTTCAGATTAGAGAGAAAAGTATTTGGCTCGTCTTCTCGTGTGGAATCATCATAAATTAATTACATTCTCCTACTAAATCTGTGACATTAACTAGAACATCTGATGTAGGAAAGCAATTATCCATGTAATTTGTCCTTTGAGATGATGAGAAAGGTTATTGAGGCATCTGAATTGTGGAAAACCTAGTTTCTCCATTCAGAATAGTGCAGTGTTGCACTAATGTTGCTTGGTCACTTTGGTTTATCCAAGAGTTCATTGTGGAATATCTGTATTTAGTGGCTGTTGGCCCCAGGGGTGGGTGGTTGGGGGATGGATTAGGCAAAAAAGATGAAGAGATTATGATAACCTGCCAATTTGTATGAGTTCGTTGACAGCGTAAGGGTGATCCATCTCGATGACGAATTCCATGATACCAAGAAATCGAAATTAATCGTTCAATGTCTACTCGTTCTCCCCTCTTCAATTCCCAATGAACAGCATGATCTTGACCTATCATTTGTTCAATTTGGCCGATTTGATACTTAGTTAATTCTGTCACCTAGTCGATAACGAACCTGAATGGCTTTGGTTGAGGCAACTCTTACTTGTTCACCACCAACTAATATAGCTCCTGAAATATATAGCATTTTTAATCCTTCCTTTTGCTAGTCTTCTCGGCTGGAATCATAAAAAGGTTGTCTCCTCTTTCATGATCCTTTCTATAGGTAGAACTACTGTGAGCAGTATAAACTTCGACCCTTATTTTTTTCTTCATATTGTAAAGGGGAGCATTCTCCTTAAAACAATAGCTTGTAATAATTCCAGAAGGTAATAGGAAAATGAAGGATGTGACAAGAATTTAGGTGAACCCTTGAATGTCTTCAATTGAAGGGTTCTTTTTTCGGCATCTGGTGTTATTCTAGTTGCATGAACCATAGATTGATCTAGTAAGCAAATCAATCTATGATCTAATGGAACTCGTGAGAGATGGGATCATTCAAGTGGTTAGAATGATGCGTTCACTAGGAGGCATAGATTAGGGAATAGATACTATTTGTGATACAGTTCACTAAGAATTAAGATGCATTTCTATTCAATTTTGATGCACAATAGGAATTATTTAGAGTTTATGAGCTGTCTTTGACATTGAAAACTTATTATTGCAGGACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAGGTTTAACACATTCAAAGATGCTTTGATTCAGTGTTGTACCTTAATTAATTATCTTTACCTTTTTCTCTTTGTTGAGCTAATGATGAACTGACAATTACTTTTAAGGGAAAAGTGCAGTACTACTAGAATGATTATTGCTGGATTTCAGAAATGTGTTGCCTAGATGATTGTAAATGCATTTCTTAAAGAATTTCTGTAAGTGAATATAATAAAAATCTTTAACTAACTGAATGTTGCTCGGACTCTTAAAAAATGTCAATGGTGCGTCTAGGATCCTCCAAAAATAGCGCATTTTTGGAGGGTCCGACATCGGTGCGACAACATTTTTGGAGAGTCTTGAACAATATAGATGATGCAAACAGAGTTAGTAGTACTTAATAAACAAAGTGTTTTTCATCTAAAACAAAGAAATTATTCTTGTTTCCTTTTTCATTTGTCTTGACTTGTCTGTGATTTAAATCATGGTTTGCAGGAAGAAAGTTTTAGCCTTCAAAAATCGTACTTTGTAGTTTCAACTTCTCTGTCTAAATTTGCTGCTCATTCCCTTGCTGCATAATTGCTCCATTTTGCTTAATTATGCAGTTCTTTCATTCTTCTTCTATGGTATAGTTGGATTATATTTTACTTGTTCAGTGTTTCTCTGATTTCACTTGCTCATTTTTCTTTAATATGGATGCTTAAATGGGATTAGGGTTGTGGCAAACGATTTATGTTGATGAAGTGCTTGTTTTCTGATAAGTTGATTCTGGATCTACCTATGCAGCCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAGGTTAGTTCTGCAAGATGTTGACCATTTTTTATCATGTTCCCCTTATTAAAAGCAGAATGAGTAGGATCATCAGTGAGTCCTATGAGTTGTTACTTGTTTGTGTTTTCAGTGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAGGTATCAGTGCTTTACATAAAGTTAGTTTCCCACTTGTTTTGTATTCCAAGTTGTTATTTCTGTTATAAATCCACTTGTTTTGTATTGCTTTGTTAAAAATAGAGTAAGTATTTTCTGCGTTCCTTCTAGAACGTGAGTAATTAGGTCAACACAGTTGCCTGAGGCTTTGCCATTCTGAGAAAAAGATTGGAATTATTTAGTGTTATGTCTCTACAGGCAGATGCAGGGGCAGACCCAACCTTACAGTAACAAATTCATCTAAACCCGATAGTTTTGACTCGAAGCATAAATTTATGTGTAAAAATTGACTAAGATTGCAGTAAACGGTAGATATAAAGCCATAACTTCAAAAATATTGATGCACCCAAGGGAATGACGTAGTGGTCAATGAAGTGGCTTGGGAACCATGAGTTCTAGCCTTGTTGAACTGAGTTACCTGATGCATGTTGTTGCTGGTGGGAGGTGACAACTGACAGGTTTCCCATGGAATTAGTCGAGGTGTGAGTAAGTTGGCACAGACACCATGGTCATCAAAAAAGAAACTTTGAAAATATTAATGAGCTCAATGCTAGGAACTTAAAGGTTGAACCCATAGAATTTAAATTAGGAATTCGCCTCCATGCAGTTGAGTGATTGCAAGTCTAACTTTAACAGTCTATGATGGATTATCATATTGATCGACTCTTACTTCTAGTTTTGTTACTTCAGGCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAGGTAAGGTGCTAAGTGCTGGAGCTTTAAGTAATGTACAAGTTCAAGCTTGTGCATCTAAAATCAACTGTATCTTGTCTGTATGCTTGCATTAAAACATCTTTTATCTTTGATCCCTCACTTTCAATGACAATGTACTGCTGATTGATTGACTGTGTTTGCTTTTATTTATTTATGCTTAATTTTTGTTTCCGATGCGATATGCCTAAATAGGATGGTACATAATAGGATTGGTTTCTATGGCATGGTCTGGTTCTTTTAAAATTGAAGCATTTCTAGGATAGCTATGTTTATATTATTATATTTTCAGTAAATTCCTGTTATGAAACTTCCCGTCAAGTATCTGGACCAAATACTTTGTAATAGAGAAGCATGCCTTAAGAAATTGCCTTATAATTCCTCTTTTCTTCTTCACCTGGTGCATCAACAAGTTCATAGGTCTTGTAATATACTTCCTGTAAATGATCTGTTGCATGAGCTGTGCAATCTTGAGACCTTGACTACACAAGTTGTGATACGATTCTAAGTGTTGGCTATACTTGCTATTTTTTATAGTCCTGCCATCTACTGGTATTGGGGCCCTTTCTGCAAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAAAGGTAAAATTATTGAGCCAGTTTTTAGTTCAGAATATATCTGTCTCACTTTTAGATTGTTTGTACCCAGTGTTTCCTAGTTTTTGTTCCATCATTTCATATTTTTGATGTGACAAAACACAGTCCATTTATTATGTGGGCTCTGTCTGTAAAATTTCCCATATTAACTGTTGAATATATAGAAGCTTTTAATATTGTTGTTAACATGATTAAGTCAGAGAGCTGTTGTCTCTTAATTGCCAACCTCTTATGGAAGAGACAATCGGAAACTAAATAGTCTTTTCAATTTATTGACATCAAAATATCTACTTAATTTCACTTCTAGAGTATGTACAATAATGTATGGGCAGAAATAGTGTTTTAATAACTTGAAAGTTCTTTGAGCTGCTAGTCACTTATTTGAGTCATCACCTCTGAGAAATGGATGGCAGTTTGCTCATCATTTCTTGAAATTTTTGGTCTTTATTCCACTATTGAATAATCTTACATCAGAGAGCGTTGGAATCAATTTTCTTTTAAGGTAAATGAGAGTGCTTTTTGTGGCTATCAATTTTCTTCTTGAATCTTGGTTTAGGTGTATTCCTACTAAGCTTTCACCAGAGGTGTGCCCATCATCTTTCTTGTCGTTGATCAGTTTACTAAGAATAGATGACGTTTGTATGCCAATGGTGTTAGTCTGGACTCTGAGTTATGTAATGTGCATGTCCAGCACCAATGTGGCGATGAATAAAAAATTTATTGCTTATACCGAAATAAAGAAACCATGTGATTGCTTTTTCCAAAGAGTTGTATGTTTTCCAATTTCAGGAGGCCAACAAGTTGCTCCAGCCGGCTGACAAAACTCTGAAGACAATGGCTATTGAGTTTGCGGAGTATCAGGTTAGTTTATCTGAAAAGCCTGTGGATGTATGATTTATTTAAGGACAAACAGGATGTTAAGAACCTGTTTTGGTCTTCTTATATTTATAATTGTTAACATCAATTGATTAGATTTCAACTGCTTCAGGTCTGTGTTGACGTGTTTCTCACAACACAATCTTATGTAGACATTGCCTCCATCTCGGTCATTCCT</genome_strand>
        <mrna_strand>AGGAACCGTTGAGTTTGTCGCTACCAAGGAATATATG......................................................................................................................................................................................................................................................................................................................GTGCGAGATCCGATGCCCGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCGATCAGCCAAGTTATTTCTGATCTCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGATGCTTATAGTCCCTGATGTACAAGACGTTTATACCCCCCTTCAGACTGATGTTATTGTGCAGCTCTCGGAG.............................................................................................................TGCCGTCAACACCTAGAGCTTCTGCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGACTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCTTGGCAATGAAAAGCACAGGAGGCAAACTTCTTGTGTTTCAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCATCTACTGGTATTGGAGCCCTTTCTGCTAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCAACAAGTTGCTCCAGCCGGCTGACAAAACTCTGAAGACAATGGCTATTGAGTTTGCGGAGCATCAG...............................................................................................................................GTCTGTGTTGACGTGTTTCTCACAACACAATCTTATGTAGACATTGCCTNCATCTCGGTCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479383" ref_strand="+" ref_description="SGN-E479383 [cSTD-9-N11]">
      <seq>cagccaagttatttcagatctccctgacggtcctcggacattggtcggagttgctacatttgactcaactatccacttctacaatctcaagcgcgcattgcagcagccattgatgcttatagtccctgatgtacaagacgtttataccccccttcagactgatgttattgtgcagctctcggagtgccgtcaacacctagagcttctgctagaaagcatcccaacaatgttccagaacaacaggactgctgattcagcttttggagctgcagtcaaggctgctttcttggcaatgaaaagcacaggaggcaaacttcttgtgtttcaatcagtcctgccatctactggtattggagccctttctgctagagaggctgaaggaagaaccaatgtatcagctgcagaaaaggaggccaacaagttgctccagccggctgacaaaactctgaagacaatggctattgagtttgcggagtatcaggtctgtgttgacgtgtttctcacaacacaatcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65735" stop="61573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65428" g_stop="65348" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="106" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65347" i_stop="64585" i_length="763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64584" g_stop="64507" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="184" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64506" i_stop="64398" i_length="109">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64397" g_stop="64305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="277" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64304" i_stop="63597" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63596" g_stop="63542" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="332" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63541" i_stop="62990" i_length="552">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62989" g_stop="62913" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="409" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62912" i_stop="62109" i_length="804">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62108" g_stop="62037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="481" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62036" i_stop="61910" i_length="127">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61909" g_stop="61873" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="518" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E479383" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65428" e_stop="65348"/>
          <exon e_start="64584" e_stop="64507"/>
          <exon e_start="64397" e_stop="64305"/>
          <exon e_start="63596" e_stop="63542"/>
          <exon e_start="62989" e_stop="62913"/>
          <exon e_start="62108" e_stop="62037"/>
          <exon e_start="61909" e_stop="61873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAGGTTTAACACATTCAAAGATGCTTTGATTCAGTGTTGTACCTTAATTAATTATCTTTACCTTTTTCTCTTTGTTGAGCTAATGATGAACTGACAATTACTTTTAAGGGAAAAGTGCAGTACTACTAGAATGATTATTGCTGGATTTCAGAAATGTGTTGCCTAGATGATTGTAAATGCATTTCTTAAAGAATTTCTGTAAGTGAATATAATAAAAATCTTTAACTAACTGAATGTTGCTCGGACTCTTAAAAAATGTCAATGGTGCGTCTAGGATCCTCCAAAAATAGCGCATTTTTGGAGGGTCCGACATCGGTGCGACAACATTTTTGGAGAGTCTTGAACAATATAGATGATGCAAACAGAGTTAGTAGTACTTAATAAACAAAGTGTTTTTCATCTAAAACAAAGAAATTATTCTTGTTTCCTTTTTCATTTGTCTTGACTTGTCTGTGATTTAAATCATGGTTTGCAGGAAGAAAGTTTTAGCCTTCAAAAATCGTACTTTGTAGTTTCAACTTCTCTGTCTAAATTTGCTGCTCATTCCCTTGCTGCATAATTGCTCCATTTTGCTTAATTATGCAGTTCTTTCATTCTTCTTCTATGGTATAGTTGGATTATATTTTACTTGTTCAGTGTTTCTCTGATTTCACTTGCTCATTTTTCTTTAATATGGATGCTTAAATGGGATTAGGGTTGTGGCAAACGATTTATGTTGATGAAGTGCTTGTTTTCTGATAAGTTGATTCTGGATCTACCTATGCAGCCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAGGTTAGTTCTGCAAGATGTTGACCATTTTTTATCATGTTCCCCTTATTAAAAGCAGAATGAGTAGGATCATCAGTGAGTCCTATGAGTTGTTACTTGTTTGTGTTTTCAGTGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAGGTATCAGTGCTTTACATAAAGTTAGTTTCCCACTTGTTTTGTATTCCAAGTTGTTATTTCTGTTATAAATCCACTTGTTTTGTATTGCTTTGTTAAAAATAGAGTAAGTATTTTCTGCGTTCCTTCTAGAACGTGAGTAATTAGGTCAACACAGTTGCCTGAGGCTTTGCCATTCTGAGAAAAAGATTGGAATTATTTAGTGTTATGTCTCTACAGGCAGATGCAGGGGCAGACCCAACCTTACAGTAACAAATTCATCTAAACCCGATAGTTTTGACTCGAAGCATAAATTTATGTGTAAAAATTGACTAAGATTGCAGTAAACGGTAGATATAAAGCCATAACTTCAAAAATATTGATGCACCCAAGGGAATGACGTAGTGGTCAATGAAGTGGCTTGGGAACCATGAGTTCTAGCCTTGTTGAACTGAGTTACCTGATGCATGTTGTTGCTGGTGGGAGGTGACAACTGACAGGTTTCCCATGGAATTAGTCGAGGTGTGAGTAAGTTGGCACAGACACCATGGTCATCAAAAAAGAAACTTTGAAAATATTAATGAGCTCAATGCTAGGAACTTAAAGGTTGAACCCATAGAATTTAAATTAGGAATTCGCCTCCATGCAGTTGAGTGATTGCAAGTCTAACTTTAACAGTCTATGATGGATTATCATATTGATCGACTCTTACTTCTAGTTTTGTTACTTCAGGCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAGGTAAGGTGCTAAGTGCTGGAGCTTTAAGTAATGTACAAGTTCAAGCTTGTGCATCTAAAATCAACTGTATCTTGTCTGTATGCTTGCATTAAAACATCTTTTATCTTTGATCCCTCACTTTCAATGACAATGTACTGCTGATTGATTGACTGTGTTTGCTTTTATTTATTTATGCTTAATTTTTGTTTCCGATGCGATATGCCTAAATAGGATGGTACATAATAGGATTGGTTTCTATGGCATGGTCTGGTTCTTTTAAAATTGAAGCATTTCTAGGATAGCTATGTTTATATTATTATATTTTCAGTAAATTCCTGTTATGAAACTTCCCGTCAAGTATCTGGACCAAATACTTTGTAATAGAGAAGCATGCCTTAAGAAATTGCCTTATAATTCCTCTTTTCTTCTTCACCTGGTGCATCAACAAGTTCATAGGTCTTGTAATATACTTCCTGTAAATGATCTGTTGCATGAGCTGTGCAATCTTGAGACCTTGACTACACAAGTTGTGATACGATTCTAAGTGTTGGCTATACTTGCTATTTTTTATAGTCCTGCCATCTACTGGTATTGGGGCCCTTTCTGCAAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAAAGGTAAAATTATTGAGCCAGTTTTTAGTTCAGAATATATCTGTCTCACTTTTAGATTGTTTGTACCCAGTGTTTCCTAGTTTTTGTTCCATCATTTCATATTTTTGATGTGACAAAACACAGTCCATTTATTATGTGGGCTCTGTCTGTAAAATTTCCCATATTAACTGTTGAATATATAGAAGCTTTTAATATTGTTGTTAACATGATTAAGTCAGAGAGCTGTTGTCTCTTAATTGCCAACCTCTTATGGAAGAGACAATCGGAAACTAAATAGTCTTTTCAATTTATTGACATCAAAATATCTACTTAATTTCACTTCTAGAGTATGTACAATAATGTATGGGCAGAAATAGTGTTTTAATAACTTGAAAGTTCTTTGAGCTGCTAGTCACTTATTTGAGTCATCACCTCTGAGAAATGGATGGCAGTTTGCTCATCATTTCTTGAAATTTTTGGTCTTTATTCCACTATTGAATAATCTTACATCAGAGAGCGTTGGAATCAATTTTCTTTTAAGGTAAATGAGAGTGCTTTTTGTGGCTATCAATTTTCTTCTTGAATCTTGGTTTAGGTGTATTCCTACTAAGCTTTCACCAGAGGTGTGCCCATCATCTTTCTTGTCGTTGATCAGTTTACTAAGAATAGATGACGTTTGTATGCCAATGGTGTTAGTCTGGACTCTGAGTTATGTAATGTGCATGTCCAGCACCAATGTGGCGATGAATAAAAAATTTATTGCTTATACCGAAATAAAGAAACCATGTGATTGCTTTTTCCAAAGAGTTGTATGTTTTCCAATTTCAGGAGGCCAACAAGTTGCTCCAGCCGGCTGACAAAACTCTGAAGACAATGGCTATTGAGTTTGCGGAGTATCAGGTTAGTTTATCTGAAAAGCCTGTGGATGTATGATTTATTTAAGGACAAACAGGATGTTAAGAACCTGTTTTGGTCTTCTTATATTTATAATTGTTAACATCAATTGATTAGATTTCAACTGCTTCAGGTCTGTGTTGACGTGTTTCTCACAACACAATCTTATG</genome_strand>
        <mrna_strand>GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGCGCATTGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGATGCTTATAGTCCCTGATGTACAAGACGTTTATACCCCCCTTCAGACTGATGTTATTGTGCAGCTCTCGGAG.............................................................................................................TGCCGTCAACACCTAGAGCTTCTGCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGACTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCTTGGCAATGAAAAGCACAGGAGGCAAACTTCTTGTGTTTCAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCATCTACTGGTATTGGAGCCCTTTCTGCTAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCAACAAGTTGCTCCAGCCGGCTGACAAAACTCTGAAGACAATGGCTATTGAGTTTGCGGAGTATCAG...............................................................................................................................GTCTGTGTTGACGTGTTTCTCACAACACAATCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297572" ref_strand="+" ref_description="SGN-E297572 [cLET-28-E10]">
      <seq>gagtttgtcgctaccaaggagtatatggtgcgagatccaatgcctgctgtgtatttcttcctgatagacgtttccatgaatgccatacagactggtgcaactgcagctgcttgcagtgcaatcagccaagttatttctgatctccctgacggtcctcggacattggtcggagttgctacatttgactcaactatccacttctacaatctcaagcgtgcattgcagcagccattgatgcttatagtccctgatgtccaagatgtttacacccccctacagactgatgttatcgtgcagctctcggagtgccgtcaacacctagagcttcttctagaaagcatcccaacaatgttccagaacaacaggattgctgattcagcttttggagctgcagtcaaggctgctttcttggcaatgaaaagcactggaggcaaacttcttgtgtttcaatcagtcctgccatctactggtattggggccctttctgcaagagaggctgaaggaagaaccaatgtatcagctgcagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67378" stop="62615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67078" g_stop="67052" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67051" i_stop="66742" i_length="310">
            <donor d_prob="0.489" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66741" g_stop="66622" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="147" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66621" i_stop="65429" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65428" g_stop="65348" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="228" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65347" i_stop="64585" i_length="763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64584" g_stop="64507" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="306" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64506" i_stop="64398" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64397" g_stop="64305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="399" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64304" i_stop="63597" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63596" g_stop="63542" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="454" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63541" i_stop="62990" i_length="552">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62989" g_stop="62915" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="529" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E297572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67078" e_stop="67052"/>
          <exon e_start="66741" e_stop="66622"/>
          <exon e_start="65428" e_stop="65348"/>
          <exon e_start="64584" e_stop="64507"/>
          <exon e_start="64397" e_stop="64305"/>
          <exon e_start="63596" e_stop="63542"/>
          <exon e_start="62989" e_stop="62915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTGTCGCTACCAAGGAGTATATGGTTGGTACCTTTTGGATACATTGGTTCAGGGATGTGATTGCATGACATTATAGGAGTAATGCAGTATTAAGTAGACATTCCGTGCTCTGAACTTTCAGTTCAGCTAGCTTTGGGCTTTCAAATTTACCATCTGAATTTGTTTGGGTATTTGGGGAAGCTAACCACAACAGAGTGGAACAAAAAAAAAATTATATTGCAATATCAAATAATTTGTAGATGCACTCCTTTCTTTGGTGTAGGGAATCCCTTAATTCGATTTTGTAACTTTTGGATTTTGCTGTAATAACTTGATATTTGTATCGTAATTCAGGTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCTGTAAGTCCTATAGTTTGTTTATGATGATGCAACATGCATTTTTGTACCTTCAGATTAGAGAGAAAAGTATTTGGCTCGTCTTCTCGTGTGGAATCATCATAAATTAATTACATTCTCCTACTAAATCTGTGACATTAACTAGAACATCTGATGTAGGAAAGCAATTATCCATGTAATTTGTCCTTTGAGATGATGAGAAAGGTTATTGAGGCATCTGAATTGTGGAAAACCTAGTTTCTCCATTCAGAATAGTGCAGTGTTGCACTAATGTTGCTTGGTCACTTTGGTTTATCCAAGAGTTCATTGTGGAATATCTGTATTTAGTGGCTGTTGGCCCCAGGGGTGGGTGGTTGGGGGATGGATTAGGCAAAAAAGATGAAGAGATTATGATAACCTGCCAATTTGTATGAGTTCGTTGACAGCGTAAGGGTGATCCATCTCGATGACGAATTCCATGATACCAAGAAATCGAAATTAATCGTTCAATGTCTACTCGTTCTCCCCTCTTCAATTCCCAATGAACAGCATGATCTTGACCTATCATTTGTTCAATTTGGCCGATTTGATACTTAGTTAATTCTGTCACCTAGTCGATAACGAACCTGAATGGCTTTGGTTGAGGCAACTCTTACTTGTTCACCACCAACTAATATAGCTCCTGAAATATATAGCATTTTTAATCCTTCCTTTTGCTAGTCTTCTCGGCTGGAATCATAAAAAGGTTGTCTCCTCTTTCATGATCCTTTCTATAGGTAGAACTACTGTGAGCAGTATAAACTTCGACCCTTATTTTTTTCTTCATATTGTAAAGGGGAGCATTCTCCTTAAAACAATAGCTTGTAATAATTCCAGAAGGTAATAGGAAAATGAAGGATGTGACAAGAATTTAGGTGAACCCTTGAATGTCTTCAATTGAAGGGTTCTTTTTTCGGCATCTGGTGTTATTCTAGTTGCATGAACCATAGATTGATCTAGTAAGCAAATCAATCTATGATCTAATGGAACTCGTGAGAGATGGGATCATTCAAGTGGTTAGAATGATGCGTTCACTAGGAGGCATAGATTAGGGAATAGATACTATTTGTGATACAGTTCACTAAGAATTAAGATGCATTTCTATTCAATTTTGATGCACAATAGGAATTATTTAGAGTTTATGAGCTGTCTTTGACATTGAAAACTTATTATTGCAGGACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAGGTTTAACACATTCAAAGATGCTTTGATTCAGTGTTGTACCTTAATTAATTATCTTTACCTTTTTCTCTTTGTTGAGCTAATGATGAACTGACAATTACTTTTAAGGGAAAAGTGCAGTACTACTAGAATGATTATTGCTGGATTTCAGAAATGTGTTGCCTAGATGATTGTAAATGCATTTCTTAAAGAATTTCTGTAAGTGAATATAATAAAAATCTTTAACTAACTGAATGTTGCTCGGACTCTTAAAAAATGTCAATGGTGCGTCTAGGATCCTCCAAAAATAGCGCATTTTTGGAGGGTCCGACATCGGTGCGACAACATTTTTGGAGAGTCTTGAACAATATAGATGATGCAAACAGAGTTAGTAGTACTTAATAAACAAAGTGTTTTTCATCTAAAACAAAGAAATTATTCTTGTTTCCTTTTTCATTTGTCTTGACTTGTCTGTGATTTAAATCATGGTTTGCAGGAAGAAAGTTTTAGCCTTCAAAAATCGTACTTTGTAGTTTCAACTTCTCTGTCTAAATTTGCTGCTCATTCCCTTGCTGCATAATTGCTCCATTTTGCTTAATTATGCAGTTCTTTCATTCTTCTTCTATGGTATAGTTGGATTATATTTTACTTGTTCAGTGTTTCTCTGATTTCACTTGCTCATTTTTCTTTAATATGGATGCTTAAATGGGATTAGGGTTGTGGCAAACGATTTATGTTGATGAAGTGCTTGTTTTCTGATAAGTTGATTCTGGATCTACCTATGCAGCCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAGGTTAGTTCTGCAAGATGTTGACCATTTTTTATCATGTTCCCCTTATTAAAAGCAGAATGAGTAGGATCATCAGTGAGTCCTATGAGTTGTTACTTGTTTGTGTTTTCAGTGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAGGTATCAGTGCTTTACATAAAGTTAGTTTCCCACTTGTTTTGTATTCCAAGTTGTTATTTCTGTTATAAATCCACTTGTTTTGTATTGCTTTGTTAAAAATAGAGTAAGTATTTTCTGCGTTCCTTCTAGAACGTGAGTAATTAGGTCAACACAGTTGCCTGAGGCTTTGCCATTCTGAGAAAAAGATTGGAATTATTTAGTGTTATGTCTCTACAGGCAGATGCAGGGGCAGACCCAACCTTACAGTAACAAATTCATCTAAACCCGATAGTTTTGACTCGAAGCATAAATTTATGTGTAAAAATTGACTAAGATTGCAGTAAACGGTAGATATAAAGCCATAACTTCAAAAATATTGATGCACCCAAGGGAATGACGTAGTGGTCAATGAAGTGGCTTGGGAACCATGAGTTCTAGCCTTGTTGAACTGAGTTACCTGATGCATGTTGTTGCTGGTGGGAGGTGACAACTGACAGGTTTCCCATGGAATTAGTCGAGGTGTGAGTAAGTTGGCACAGACACCATGGTCATCAAAAAAGAAACTTTGAAAATATTAATGAGCTCAATGCTAGGAACTTAAAGGTTGAACCCATAGAATTTAAATTAGGAATTCGCCTCCATGCAGTTGAGTGATTGCAAGTCTAACTTTAACAGTCTATGATGGATTATCATATTGATCGACTCTTACTTCTAGTTTTGTTACTTCAGGCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAGGTAAGGTGCTAAGTGCTGGAGCTTTAAGTAATGTACAAGTTCAAGCTTGTGCATCTAAAATCAACTGTATCTTGTCTGTATGCTTGCATTAAAACATCTTTTATCTTTGATCCCTCACTTTCAATGACAATGTACTGCTGATTGATTGACTGTGTTTGCTTTTATTTATTTATGCTTAATTTTTGTTTCCGATGCGATATGCCTAAATAGGATGGTACATAATAGGATTGGTTTCTATGGCATGGTCTGGTTCTTTTAAAATTGAAGCATTTCTAGGATAGCTATGTTTATATTATTATATTTTCAGTAAATTCCTGTTATGAAACTTCCCGTCAAGTATCTGGACCAAATACTTTGTAATAGAGAAGCATGCCTTAAGAAATTGCCTTATAATTCCTCTTTTCTTCTTCACCTGGTGCATCAACAAGTTCATAGGTCTTGTAATATACTTCCTGTAAATGATCTGTTGCATGAGCTGTGCAATCTTGAGACCTTGACTACACAAGTTGTGATACGATTCTAAGTGTTGGCTATACTTGCTATTTTTTATAGTCCTGCCATCTACTGGTATTGGGGCCCTTTCTGCAAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAA</genome_strand>
        <mrna_strand>GAGTTTGTCGCTACCAAGGAGTATATG......................................................................................................................................................................................................................................................................................................................GTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAG.............................................................................................................TGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCATCTACTGGTATTGGGGCCCTTTCTGCAAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477221" ref_strand="+" ref_description="SGN-E477221 [cSTB-47-F17]">
      <seq>gcaaaggctatataaatcctttcgtgaagttcattgatcagggaagacgtttcatctgtaacttgtgtggacatactgatgaaactccacgtgactatcagtgcaacttaggtccagatggcaggcgtagggatgctgatgaaaggcctgaactatgccgaggaactgttgagtttgtcgctaccaaggaatatatggtgcgagatccgatgcccgctgtgtatttcttcctgatagacgtttccatgaatgccatacagactggtgcaactgcagctgcttgcagtgcgatcagccaagttatttcagatctccctgacggtcctcggacattggtcggagttgctacatttgactcaactatccacttctacaatctcaagcgcgcattgcagcagccattgatgcttatagtccctgatgtacaagacgtttataccccccttcagactgatgttattgtgcagctctcggagtgccgtcaacacctagagcttctgctagaaagcatcccaacaatgttccagaacaacaggactgctgattcagcttttggagctgcagtcaaggctgctttcttggcaatgaaaagcacaggaggcaaacttcttgtgtttcaatcagtcctgccatctactggtattggagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67882" stop="62663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67582" g_stop="67514" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67513" i_stop="67180" i_length="334">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67179" g_stop="67052" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="197" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67051" i_stop="66742" i_length="310">
            <donor d_prob="0.489" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66741" g_stop="66622" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66621" i_stop="65429" i_length="1193">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65428" g_stop="65348" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="398" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65347" i_stop="64585" i_length="763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64584" g_stop="64507" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="476" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64506" i_stop="64398" i_length="109">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64397" g_stop="64305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="569" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64304" i_stop="63597" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63596" g_stop="63542" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="624" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63541" i_stop="62990" i_length="552">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62989" g_stop="62963" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="651" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E477221" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67582" e_stop="67514"/>
          <exon e_start="67179" e_stop="67052"/>
          <exon e_start="66741" e_stop="66622"/>
          <exon e_start="65428" e_stop="65348"/>
          <exon e_start="64584" e_stop="64507"/>
          <exon e_start="64397" e_stop="64305"/>
          <exon e_start="63596" e_stop="63542"/>
          <exon e_start="62989" e_stop="62963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGCTATATAAATCCTTTCGTGAAGTTCATTGATCAGGGAAGACGATTCATCTGTAACTTGTGTGGTAAGAATGAAGTTCATTTATTCCCACTGAAGTTATGTGATATTTGGAGTCTAGAGCTGCTCTAGATATTATTTTACAGACTCAAGATAGAAATGCAATATGATAAGGTTGTCTGATGTTTTGTGAAAAAACTAAAGGTTCTGAAACAGAAGTATCAAATTTTACATTGCTAATGATATTTTTCTTCTCCAACTACTCTAACAAAAAACACACACATTCTCAGATGTCTAATATACATTTATACCGGTCAACTGAGGACGTCCAATGCTGCATTTTGAATGAAAATTTGCTGTTATGTAGTTTTATCTCATCTGTCTTGCCATCCTTTTTGCAGGACATACTGATGAAACTCCACGTGACTATCAGTGCAACTTAGGTCCAGATGGCAGGCGTAGGGATGCTGATGAAAGGCCTGAACTATGCCGAGGAACCGTTGAGTTTGTCGCTACCAAGGAGTATATGGTTGGTACCTTTTGGATACATTGGTTCAGGGATGTGATTGCATGACATTATAGGAGTAATGCAGTATTAAGTAGACATTCCGTGCTCTGAACTTTCAGTTCAGCTAGCTTTGGGCTTTCAAATTTACCATCTGAATTTGTTTGGGTATTTGGGGAAGCTAACCACAACAGAGTGGAACAAAAAAAAAATTATATTGCAATATCAAATAATTTGTAGATGCACTCCTTTCTTTGGTGTAGGGAATCCCTTAATTCGATTTTGTAACTTTTGGATTTTGCTGTAATAACTTGATATTTGTATCGTAATTCAGGTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCTGTAAGTCCTATAGTTTGTTTATGATGATGCAACATGCATTTTTGTACCTTCAGATTAGAGAGAAAAGTATTTGGCTCGTCTTCTCGTGTGGAATCATCATAAATTAATTACATTCTCCTACTAAATCTGTGACATTAACTAGAACATCTGATGTAGGAAAGCAATTATCCATGTAATTTGTCCTTTGAGATGATGAGAAAGGTTATTGAGGCATCTGAATTGTGGAAAACCTAGTTTCTCCATTCAGAATAGTGCAGTGTTGCACTAATGTTGCTTGGTCACTTTGGTTTATCCAAGAGTTCATTGTGGAATATCTGTATTTAGTGGCTGTTGGCCCCAGGGGTGGGTGGTTGGGGGATGGATTAGGCAAAAAAGATGAAGAGATTATGATAACCTGCCAATTTGTATGAGTTCGTTGACAGCGTAAGGGTGATCCATCTCGATGACGAATTCCATGATACCAAGAAATCGAAATTAATCGTTCAATGTCTACTCGTTCTCCCCTCTTCAATTCCCAATGAACAGCATGATCTTGACCTATCATTTGTTCAATTTGGCCGATTTGATACTTAGTTAATTCTGTCACCTAGTCGATAACGAACCTGAATGGCTTTGGTTGAGGCAACTCTTACTTGTTCACCACCAACTAATATAGCTCCTGAAATATATAGCATTTTTAATCCTTCCTTTTGCTAGTCTTCTCGGCTGGAATCATAAAAAGGTTGTCTCCTCTTTCATGATCCTTTCTATAGGTAGAACTACTGTGAGCAGTATAAACTTCGACCCTTATTTTTTTCTTCATATTGTAAAGGGGAGCATTCTCCTTAAAACAATAGCTTGTAATAATTCCAGAAGGTAATAGGAAAATGAAGGATGTGACAAGAATTTAGGTGAACCCTTGAATGTCTTCAATTGAAGGGTTCTTTTTTCGGCATCTGGTGTTATTCTAGTTGCATGAACCATAGATTGATCTAGTAAGCAAATCAATCTATGATCTAATGGAACTCGTGAGAGATGGGATCATTCAAGTGGTTAGAATGATGCGTTCACTAGGAGGCATAGATTAGGGAATAGATACTATTTGTGATACAGTTCACTAAGAATTAAGATGCATTTCTATTCAATTTTGATGCACAATAGGAATTATTTAGAGTTTATGAGCTGTCTTTGACATTGAAAACTTATTATTGCAGGACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAGGTTTAACACATTCAAAGATGCTTTGATTCAGTGTTGTACCTTAATTAATTATCTTTACCTTTTTCTCTTTGTTGAGCTAATGATGAACTGACAATTACTTTTAAGGGAAAAGTGCAGTACTACTAGAATGATTATTGCTGGATTTCAGAAATGTGTTGCCTAGATGATTGTAAATGCATTTCTTAAAGAATTTCTGTAAGTGAATATAATAAAAATCTTTAACTAACTGAATGTTGCTCGGACTCTTAAAAAATGTCAATGGTGCGTCTAGGATCCTCCAAAAATAGCGCATTTTTGGAGGGTCCGACATCGGTGCGACAACATTTTTGGAGAGTCTTGAACAATATAGATGATGCAAACAGAGTTAGTAGTACTTAATAAACAAAGTGTTTTTCATCTAAAACAAAGAAATTATTCTTGTTTCCTTTTTCATTTGTCTTGACTTGTCTGTGATTTAAATCATGGTTTGCAGGAAGAAAGTTTTAGCCTTCAAAAATCGTACTTTGTAGTTTCAACTTCTCTGTCTAAATTTGCTGCTCATTCCCTTGCTGCATAATTGCTCCATTTTGCTTAATTATGCAGTTCTTTCATTCTTCTTCTATGGTATAGTTGGATTATATTTTACTTGTTCAGTGTTTCTCTGATTTCACTTGCTCATTTTTCTTTAATATGGATGCTTAAATGGGATTAGGGTTGTGGCAAACGATTTATGTTGATGAAGTGCTTGTTTTCTGATAAGTTGATTCTGGATCTACCTATGCAGCCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAGGTTAGTTCTGCAAGATGTTGACCATTTTTTATCATGTTCCCCTTATTAAAAGCAGAATGAGTAGGATCATCAGTGAGTCCTATGAGTTGTTACTTGTTTGTGTTTTCAGTGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAGGTATCAGTGCTTTACATAAAGTTAGTTTCCCACTTGTTTTGTATTCCAAGTTGTTATTTCTGTTATAAATCCACTTGTTTTGTATTGCTTTGTTAAAAATAGAGTAAGTATTTTCTGCGTTCCTTCTAGAACGTGAGTAATTAGGTCAACACAGTTGCCTGAGGCTTTGCCATTCTGAGAAAAAGATTGGAATTATTTAGTGTTATGTCTCTACAGGCAGATGCAGGGGCAGACCCAACCTTACAGTAACAAATTCATCTAAACCCGATAGTTTTGACTCGAAGCATAAATTTATGTGTAAAAATTGACTAAGATTGCAGTAAACGGTAGATATAAAGCCATAACTTCAAAAATATTGATGCACCCAAGGGAATGACGTAGTGGTCAATGAAGTGGCTTGGGAACCATGAGTTCTAGCCTTGTTGAACTGAGTTACCTGATGCATGTTGTTGCTGGTGGGAGGTGACAACTGACAGGTTTCCCATGGAATTAGTCGAGGTGTGAGTAAGTTGGCACAGACACCATGGTCATCAAAAAAGAAACTTTGAAAATATTAATGAGCTCAATGCTAGGAACTTAAAGGTTGAACCCATAGAATTTAAATTAGGAATTCGCCTCCATGCAGTTGAGTGATTGCAAGTCTAACTTTAACAGTCTATGATGGATTATCATATTGATCGACTCTTACTTCTAGTTTTGTTACTTCAGGCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAGGTAAGGTGCTAAGTGCTGGAGCTTTAAGTAATGTACAAGTTCAAGCTTGTGCATCTAAAATCAACTGTATCTTGTCTGTATGCTTGCATTAAAACATCTTTTATCTTTGATCCCTCACTTTCAATGACAATGTACTGCTGATTGATTGACTGTGTTTGCTTTTATTTATTTATGCTTAATTTTTGTTTCCGATGCGATATGCCTAAATAGGATGGTACATAATAGGATTGGTTTCTATGGCATGGTCTGGTTCTTTTAAAATTGAAGCATTTCTAGGATAGCTATGTTTATATTATTATATTTTCAGTAAATTCCTGTTATGAAACTTCCCGTCAAGTATCTGGACCAAATACTTTGTAATAGAGAAGCATGCCTTAAGAAATTGCCTTATAATTCCTCTTTTCTTCTTCACCTGGTGCATCAACAAGTTCATAGGTCTTGTAATATACTTCCTGTAAATGATCTGTTGCATGAGCTGTGCAATCTTGAGACCTTGACTACACAAGTTGTGATACGATTCTAAGTGTTGGCTATACTTGCTATTTTTTATAGTCCTGCCATCTACTGGTATTGGGGCCC</genome_strand>
        <mrna_strand>GCAAAGGCTATATAAATCCTTTCGTGAAGTTCATTGATCAGGGAAGACGTTTCATCTGTAACTTGTGTG..............................................................................................................................................................................................................................................................................................................................................GACATACTGATGAAACTCCACGTGACTATCAGTGCAACTTAGGTCCAGATGGCAGGCGTAGGGATGCTGATGAAAGGCCTGAACTATGCCGAGGAACTGTTGAGTTTGTCGCTACCAAGGAATATATG......................................................................................................................................................................................................................................................................................................................GTGCGAGATCCGATGCCCGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCGATCAGCCAAGTTATTTCAGATCTCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGCGCATTGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGATGCTTATAGTCCCTGATGTACAAGACGTTTATACCCCCCTTCAGACTGATGTTATTGTGCAGCTCTCGGAG.............................................................................................................TGCCGTCAACACCTAGAGCTTCTGCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGACTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCTTGGCAATGAAAAGCACAGGAGGCAAACTTCTTGTGTTTCAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCATCTACTGGTATTGGAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319777" ref_strand="+" ref_description="SGN-E319777 [cTOB-12-B9]">
      <seq>actgacaaccataaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctgattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaacgggccctcacgggttccttatctcccaaaacgcgaccacctttaacatcactgcctgttaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77719" stop="79193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78019" g_stop="78154" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78393" g_stop="78488" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="232" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78489" i_stop="78569" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78570" g_stop="78893" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="556" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E319777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78019" e_stop="78154"/>
          <exon e_start="78393" e_stop="78488"/>
          <exon e_start="78570" e_stop="78893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGACAACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACT</genome_strand>
        <mrna_strand>ACTGACAACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTG.................................................................................ATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329807" ref_strand="+" ref_description="SGN-E329807 [cTOD-3-O22]">
      <seq>aaccataaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77725" stop="78984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78025" g_stop="78154" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78393" g_stop="78684" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="422" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E329807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78025" e_stop="78154"/>
          <exon e_start="78393" e_stop="78684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAA</genome_strand>
        <mrna_strand>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540223" ref_strand="+" ref_description="SGN-E540223 [TUS-60-G5]">
      <seq>taaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaacgggccctcacgggttccttatctcccaaaacgcgaccacctttaacatcactgcctgttaatactgtcaagtctcattctgaagatcaaaagaaatcaggaaaaacagcccaaaatttcatggtttcgataccatttaacctcaaagtggatgtaggttctaggaatgagggttccttgaatgatgagttaccgttttctgaactatgggctgggccagcgtattcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77730" stop="79358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78030" g_stop="78154" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78393" g_stop="79058" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="791" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E540223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78030" e_stop="78154"/>
          <exon e_start="78393" e_stop="79058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</genome_strand>
        <mrna_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548356" ref_strand="+" ref_description="SGN-E548356 [TUS-60-H4]">
      <seq>taaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgttgaagaatagtttggattcagtgatagttattttgatttcctggtaacctattgtttgagaaaatttttaggatctacagtcattcagcagtatggatctttgaacactgttgtttctgcttagattttcaggcttgtcgatcagatagtgagttatagtggaatttgatcgaatcggttattggctctgttgaaaatgattgttgttcctcagcatcgggatcaaaactatttggaaagtagggcacatggccctactcgatttgggtcatttggttcacctccctctggtgggttcatggaggtaaattgtcgggcttttgagtccagggcaggtttatatcataccaaatcgaagtcttgcaagaaacctgtcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77730" stop="79127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78030" g_stop="78154" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78393" g_stop="78827" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="560" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E548356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78030" e_stop="78154"/>
          <exon e_start="78393" e_stop="78827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAA</genome_strand>
        <mrna_strand>TAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286074" ref_strand="+" ref_description="SGN-E286074 [cLES-13-E4]">
      <seq>aaaaaccaagtacagtaatatctactgcgcatttcgtttctttgcttattagaataaggagaaaaatctcatcataaatcacccttttcagcactctgcttcagtatatactttctgacatcagaaactgaagggtggagtggtgattgtggatatatttttcatagacgtgcgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77731" stop="78746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78031" g_stop="78154" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78393" g_stop="78446" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="178" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E286074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78031" e_stop="78154"/>
          <exon e_start="78393" e_stop="78446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAGGTAATTTTCTCAATCTTTACTGGAAAATGAAATTTAGAACTTTGATTTGTGTGAAGTTGGTACAATTCTTTGATTTTTACATATGAAGCGGAATGAATTTAACCCTGAAATTGTATTATATGATGCTAGACTTTTTTTGCACTTTTTGTTCTGGGTGTTTCCATTTTGAGTTATTGATTTGTTTGATCTCATGTAACTTGACTGATGTCTTTTTCTTTTTGCTTGTTTTTTGTTGAAGAAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTT</genome_strand>
        <mrna_strand>AAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG..............................................................................................................................................................................................................................................AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315402" ref_strand="+" ref_description="SGN-E315402 [cTOA-22-M23]">
      <seq>ttttttctcaggcctaaaaggaatgcctctcttgagtttcctacttcagcatgtgatattcatttacgtcccattgccaagtctgcaccagcatctccaaccagggagagcagtctttctccgggaattgtgtttgacaatactgactcagtgacacagactcttcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttagttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttagtgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattcaaagttcgtgcagtcatggttagactatgaggggttcaacaaatggagtatgtttgtgcatcgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtagaggttgcgtaacttgttgctcaactatctttgctgccctggagatgaatttgttataaccatcaattgtcattcttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78792" stop="80077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79092" g_stop="79777" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E315402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79092" e_stop="79777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTC</genome_strand>
        <mrna_strand>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241203" ref_strand="+" ref_description="SGN-E241203 [cLED-26-I9]">
      <seq>ctctcttgagtttcctacttcagcatgtgatattcatttacgtcccattgccaagtctgcaccagcatctccaaccagggagagcagtctttctccgggaattgtgtttgacaatactgactcagtgacacagactcttcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttagttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttagtgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78818" stop="79854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79118" g_stop="79554" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E241203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79118" e_stop="79554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCA</genome_strand>
        <mrna_strand>CTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256668" ref_strand="+" ref_description="SGN-E256668 [cLEG-40-O3]">
      <seq>tcgtcgcatgctcaaccttgaaactaatgcccaaattctccttgaaactaatgatggatgaatgtgtggtgggagttctgaatagcagttaactagggtattatttacttttcgtattgggtaatagtagatagttcgtatggtgaataattcagtttttagttagtaagttactgtttcgcttaatgtttgtcatggtagatcagtagtgaagttgcaacatctgtcaagattggttattttaaggggaattcaatatgaacaatggctagttgatcgatactctcctggtatattcaaagttcgtgcagtcatggttagactatgaggggttcaacaaatggagtatgtttgtgcattgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtataagttgcattacttgttgctcaactatctttgctgccctggagatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78956" stop="80046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79256" g_stop="79746" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E256668" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79256" e_stop="79746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATT</genome_strand>
        <mrna_strand>TCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTACTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAATGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATTGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTATAAGTTGCATTACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317092" ref_strand="+" ref_description="SGN-E317092 [cTOA-27-H11]">
      <seq>ttcaacaaatggagtatgtttgtgcatcgaacagtggaagaagaatctgagtgatgagtgagatgctcctattacattacagtaatagatagcttgtagttctttgtagaggttgcgtaacttgttgctcaactatctttgctgccctggagatgaatttgttataaccatcaattgtcattcttgattccagtgtcgtgggattgtttattgcctcttcatgttcttttgatgttctgtaaatcggagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79288" stop="80544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79588" g_stop="80244" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E317092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79588" e_stop="80244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGC</genome_strand>
        <mrna_strand>TTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540260" ref_strand="+" ref_description="SGN-E540260 [TUS-60-H4](-)">
      <seq>tcatgttcttttgatgttctgtaaatcggagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacgacttcaaaaaaaaaaaaaaaaaaactcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79506" stop="96526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79806" g_stop="80322" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80323" i_stop="80443" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80444" g_stop="80697" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="771" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80698" i_stop="81349" i_length="652">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81350" g_stop="81375" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="797" r_length="26" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E540260" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79806" e_stop="80322"/>
          <exon e_start="80444" e_stop="80697"/>
          <exon e_start="81350" e_stop="81375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCCTTTGCTTCTGTTGTTTGTCTCGAAGTCTATACTGTTACTAATGGAGTACCTATTTTGGTTATCAGATGCTGCTTATGTGTAGTTGGTAAATGCAAAAGCATCGTTGGTATTGGAACAACTAAAGAAAATGCACGTCATATCTACTGATTTCTTTGCTAGTTTTTATCTCAAATCTTTAGTCATGATACATTTAAAACAATGTGTTCAAGTTTGAACAAGATGAGAGCAGTTCATCTGTCTTTTACCAGTAGTGAATGTATGCACTTCGTCGATGTTAGCACATATCGTATGCAAAAGCTAATATTACTACTCCAATGCTTAAATTTGTTCGTCTCTTTTGGACCACATAACATCTTTATGACTATAAGATAAAAAAAATATTTGGTAAAACTACAAGATTCAATGTTCTTTTAGTTTCCTGTCAAGTCATAACTCAATCAATAAATTAAGACGGAGTATTATTTCACTCTTCTTGATGATGACACTTGAGCCCAAAATGTGGTACACACCCCATCATGCAACACGCATTACAAAACTGATTTTGTCATACATAGAGCATTTTCTACCAACTAGTTTGTTTGTTTATTTGTGCACGTAATTTAGAGAGGACAACTATATGGAGTATCATATTCATATGTGCATGCAGAATTAACACAACCACCTGATTGTCGA</genome_strand>
        <mrna_strand>TCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548349" ref_strand="+" ref_description="SGN-E548349 [TUS-60-G5](-)">
      <seq>tttgatgttctgtaaatcgaagatattgtatatatcttagaccctaccagattagcatccctttagacttctggtttattcagttactagatcttagccttttcatccaattctgcatcctaaccatctctatttcttagtagattcaaattcttgactaggaaataggacatttggtatatctaagtccttgctattccttgaatgcctgaatgggctggtcatcatcataactttgtatgtattctcttctcaactctgaataggatatatgtcctacttcttcctcttgaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacgacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79515" stop="80994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79815" g_stop="80322" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80323" i_stop="80443" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80444" g_stop="80703" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="768" r_length="260" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E548349" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79815" e_stop="80322"/>
          <exon e_start="80444" e_stop="80703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCC</genome_strand>
        <mrna_strand>TTTGATGTTCTGTAAATCGAAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230555" ref_strand="+" ref_description="SGN-E230555 [cLEL-35-K5](-)">
      <seq>gaagttgtttccccttgaccaattttctgttttttgggaatgaaaattgggtagggaaattattagtcagttgtatccttttctgttcctggtattcgtatcttcccttttagctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcactagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79806" stop="80985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80106" g_stop="80322" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80323" i_stop="80443" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80444" g_stop="80685" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="459" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="475"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E230555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80106" e_stop="80322"/>
          <exon e_start="80444" e_stop="80685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTA</genome_strand>
        <mrna_strand>GAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230772" ref_strand="+" ref_description="SGN-E230772 [cLEL-35-K5](-)">
      <seq>gctttccttttgccagtccaattatgctagttaagaggtttattccttcaccaaaaagaaaatcatcttgcctaaggagattggtgatcacctagctactgataagcgcttttagttggagctgttggaagaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcatttccattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79918" stop="96522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80218" g_stop="80322" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80323" i_stop="80443" i_length="121">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80444" g_stop="80701" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="364" r_length="258" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E230772" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80218" e_stop="80322"/>
          <exon e_start="80444" e_stop="80701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCA-CTAGCTACTGATAAGGTAAGACTTCCTAAGTCTTTTTTTTAATTATCTATTTTGATGTTGTCTGTAACTTGGTATCTAGCTACATGTGCTACAGTTTATGCTTATATTTGAAGTTTTTTTCTTCTTTTCTGTGTAGCGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTT</genome_strand>
        <mrna_strand>GCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACCTAGCTACTGATAAG.........................................................................................................................CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTCCATTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338894" ref_strand="+" ref_description="SGN-E338894 [cTOE-21-D11]">
      <seq>cgagggttggttgaagattgttgagcggttgttctccctactctctactctcgccatggtagcactactcgttatatgtcatttcagtgtctctataagatgttgtctgtaggtcattcgaccaaactggtagttactactgcagtaattatctagttatgtcatgttttaggttttggagttttacttttgttgttgaacttgttgattttaaggtggcattttgattacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80161" stop="80988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80455" g_stop="80688" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E338894" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80455" e_stop="80688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGA</genome_strand>
        <mrna_strand>CGAG-GGTTGGTTGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360300" ref_strand="-" ref_description="SGN-E360300 [cLPP-8-G21]">
      <seq>catcacacttcatctcacaaaaggtataaccttgtccttgtttagctgtgcattcatcgtgacatgtgtgatagcaatcctgatactcttcttctgtggcttcacacacagctgtaaatacaaccatgcacatcagaaacactgcaacaaacttttgaccttccatttttatttttttatttcttttaactaaaaaaatttattgctttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84132" stop="61870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83832" g_stop="83631" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83630" i_stop="82985" i_length="646">
            <donor d_prob="0.900" d_score="0.72"/>
            <acceptor a_prob="0.654" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82984" g_stop="82968" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="214" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E360300" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83832" e_stop="83631"/>
          <exon e_start="82984" e_stop="82968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACACTTCATCTCACAAAAGGTATAACCTTGTCCTTGTTTAGCTGTGCATTCATCGTGACATGTGTGATAGCAATCCTGATACTCTTCTTCTGTGGCTTCACACACAGCTGTAAATACAACCATGCACATAAGAAACACTGCAACAAACTTTTGACCTTCCATTTTTATTTCTTTTAACAATTACTATTGCTTTACAGTGTTTCCTTGGACGATTTTCTAATGTTCATGCCCTACCCTATTTATACAATAAAAATGTATGTGGATTTCCTTCTTCATAGGACATCTATTTGTTTTGCTTAAATTAAGGTAAGGCTTCTCATAAAAACTCGCTCTTTCATTAATATTCTTCACCACTCAATTAGCTACCTAGTATCATATGATATTAATACAAAAAAATACTTTGTCCACTAATTTTATTAGCAAAATTCTGATTAAGTAACAAATTTAAAAAGATTTTTCAATTTAATATAGGAATAATTAATCCCTAACACATAAAAGGTTAGGTTAGTACTGTTTTGAAAGTACTAGTCATAAAAGTTGTAGCCTAAACCCTCACCCTACAACTTAACTCTCTGAAACTAAAAGTATATAGAGTAGATAAGAAACTCCATTAACTAATAATTGAACTTGATCTATAGTCTATAGATATAGACAGCACTCAAACAATCAAGATTTTGAAGGTTATAAATTTCGACTTTTTTCCAAATTCATAGTTGTTGAATTTGCATTTAATAAATTTTTACATAATACTGTAATTTTGCCTTTTTGAGTCTTGGAATCTCTGAGAAAACCAAAAACGGGTACTATATTTGATCTTAAGATAAAAGAAATTTGTGAAAAATAGAGCTTTGCCTTGATTAA</genome_strand>
        <mrna_strand>CATCACACTTCATCTCACAAAAGGTATAACCTTGTCCTTGTTTAGCTGTGCATTCATCGTGACATGTGTGATAGCAATCCTGATACTCTTCTTCTGTGGCTTCACACACAGCTGTAAATACAACCATGCACATCAGAAACACTGCAACAAACTTTTGACCTTCCATTTTTATTT-TTTT----ATTTCTTTTAACTAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTGCTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363198" ref_strand="+" ref_description="SGN-E363198 [cLPP-19-I8]">
      <seq>attaataaagcaataaatttttttagttaaaagaaatagaaaaataaaaatggaaggtcaaaagtttgttgcagtgtttctgatgtgcatggttgtatttacagctgtgtgtgaagccacagaataagagtatcaggattgctatcacacatgtcacgatgaatgcacagctaaacaaggacaaggtaataccttttgtgagatgaagtgtgatgcagactgctccaagaaagatttctttgctcaattccctaaattcaaggcttaatgaggaggaccagatacatacaaagcagtcggatttaatgtatttcttttgatcttttcccactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61870" stop="84280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83506" g_stop="83547" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.643"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83548" i_stop="83658" i_length="111">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83659" g_stop="83859" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="242" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83860" i_stop="83930" i_length="71">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83931" g_stop="84000" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="311" r_length="69" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E363198" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83506" e_stop="83547"/>
          <exon e_start="83659" e_stop="83859"/>
          <exon e_start="83931" e_stop="84000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAGAAGCCTTACCTTAATTTAAGCAAAACAAATAGATGTCCTATGAAGAAGGAAATCCACATACATTTTTATTGTATAAATAGGGTAGGGCATGAACATTAGAAAATCGTCCAAGGAAACACTGTAAAGCAATAGTAATTGTTAAAAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTGGTAATTTATTATATATATCTTTTATTTAACATCAAATTAAATGTGTTTTAATTCTTCTTACATTTTTGCAGCTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACATAATAAAAGCAGTCGGA-TTAATTAAT</genome_strand>
        <mrna_strand>ATTAATA-AAGCAATAAATTTTTTTAGTTAAAAGAAATAGAA...............................................................................................................AAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTGATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAATAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTAATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCCAAGAAAGATTTCTTTG.......................................................................CTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAGATACAT-A-CAAAGCAGTCGGATTTAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364273" ref_strand="+" ref_description="SGN-E364273 [cLPP-20-O5]">
      <seq>attaataaagcaataaatttttttagttaaaagaaatgaagaaataaaaatggaaggtcaaaagtttgttgcagtgtttctgatgtgcatggttgtatttacagctgtgtgtgaagccacagaagaagagtatcaggattgctatcacacatgtcacgatgaatgcacagctaaacaaggacaaggttataccttttgtgagatgaagtgtgatgcagactgctccaagaaggatttcgttgatcaattccctaaattcaatgcttaatgaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61870" stop="84263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83557" g_stop="83594" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.553"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83595" i_stop="83655" i_length="61">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83656" g_stop="83859" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="242" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83860" i_stop="83930" i_length="71">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83931" g_stop="83963" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="275" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E364273" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83557" e_stop="83594"/>
          <exon e_start="83656" e_stop="83859"/>
          <exon e_start="83931" e_stop="83963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAAATCCACATACATTTTTATTGTATAAATAGGGTAGGGCATGAACATTAGAAAATCGTCCAAGGAAACACTGTAAAGCAATAGTAATTGTTAAAAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTGGTAATTTATTATATATATCTTTTATTTAACATCAAATTAAATGTGTTTTAATTCTTCTTACATTTTTGCAGCTCAATTCCCTAAATTCAAGGCTTAATGAGGAG</genome_strand>
        <mrna_strand>ATTAATAAAGCAATAAATTTTTTTAGTTAAAAGAAATG.............................................................AAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTGATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCCAAGAAGGATTTCGTTG.......................................................................ATCAATTCCCTAAATTCAATGCTTAATGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361598" ref_strand="+" ref_description="SGN-E361598 [cLPP-6-J16]">
      <seq>aagaaataaaaaaataaaaatggaaggtcaaaagtttgttgcagtgtttctgatgtgcatggttgtatttacagctgtgtgtgaagccacagaagaagagtatcaggattgctatcacacatgtcacgatgaatgcacagctaaacaaggacaaggttataccttttgtgagatgaagtgtgatgcagactgctccaagaaggatttcgttgctcaattccctaaattcaaggcttaatgaggaggaccaaagacatacaaagcagtcggattaatgtatttcttttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83353" stop="84305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83647" g_stop="83859" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83860" i_stop="83930" i_length="71">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83931" g_stop="84000" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="280" r_length="68" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E361598" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83647" e_stop="83859"/>
          <exon e_start="83931" e_stop="84000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTAAAAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTGGTAATTTATTATATATATCTTTTATTTAACATCAAATTAAATGTGTTTTAATTCTTCTTACATTTTTGCAGCTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACATAATAAAAGCAGTCGGATTAATTAAT</genome_strand>
        <mrna_strand>AAGAAATAAAA-AAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTGATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCCAAGAAGGATTTCGTTG.......................................................................CTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACAT-A-CAAAGCAGTCGGATTAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335942" ref_strand="+" ref_description="SGN-E335942 [cTOE-6-C24]">
      <seq>tcatccaaattatatatttggtgtgaccaaaaaacataaacaagtactcttgtagatttatctgtcctcttaaaaactgctttttttgttttgttttcagaaagaaattatatggcaaatatttctacttgctcccttctcgttgctgctgtttttctagttggaatattgatgatcccatcggaaatattgggagaaacatgctatcaaatacacccagagatattgtgtgatgaaggcaaagttgaaggggaatgtttacctttctgcaatgacaaatttggatcctctgctggtggacaatgcattgagcaaattggctttgatggtcctttttgtgcatgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85591" stop="83921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85291" g_stop="85132" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85131" i_stop="84411" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84410" g_stop="84221" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="350" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E335942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85291" e_stop="85132"/>
          <exon e_start="84410" e_stop="84221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAGGTAATATTTAACTACACACACGACATGTTTTTTCATTATATTGTATTTATTGATTTAATTTGTACTTGGTAGCATATATAATTTCTCCTATGTCTGTTTTTATAATCCATCTTTAATTGGACTAGACGATTAAGTTATAAGAAAGGAGAAGGATCTTGTTCGATTGATCCTTTTTATTCATGTTTAGTCCTTTTGTGTGCATCTTCAGAACCAATTTTTTGGAAATTAAAGCTAGATCAAAATCTAAGACTCGAATATAGCTTTCTATTGTTGTCTTGAATATTCCATATTTAATCTTATGTCCGTTCTTTTCTCTTTTTTTTTAATTTTGTCTACGTGGTATTCAGGGCCCACATTGGAGCTCTAACTAAATTTGTATGGCTAGGCCCTACTCGGATATGATACATCTTCAGGCCTCAAATCCGAAAGCTTTGATATATAAGAGTAAAACAGTCTCACCGTATCAAAACTCATGTTGTTGTTACATATCTATCAACATTAATATAGAAAAAGGAATTGATCGTGATTTTAAACTTGTTCTTTACATGTTGAGCTAATTGTTTAATTAATGGAGGTAGACGAGAAGTGATTAGGAAAATGATGGTTAAAAAAAACATGTGTACCATTGTATGTGGGTTAGAGAGAAAAATCAAATCAATTCATTAGAAGTGGATGATCTATGATTTTAAATGAAGTGTTTAATCTGTACGCATGCATGCAGTTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</genome_strand>
        <mrna_strand>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553232" ref_strand="-" ref_description="SGN-E553232 [cTSB-3-E11]">
      <seq>tttttcaagaaatacaggcttccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91346" stop="88706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91046" g_stop="90984" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="342" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="456" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="529" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="596" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89257" g_stop="88999" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="855" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E553232" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553232" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91046" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="88999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</genome_strand>
        <mrna_strand>TTTTTCAAGAAATACAGGCTTCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556509" ref_strand="-" ref_description="SGN-E556509 [cTSD-3-L16]">
      <seq>atgcggaagcaaggtgcatgacaaaagcttagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91201" stop="88706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90988" g_stop="90984" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="285" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="399" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="472" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="539" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89257" g_stop="88999" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="798" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E556509" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556509" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90988" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="88999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGC-TAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</genome_strand>
        <mrna_strand>ATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350186" ref_strand="+" ref_description="SGN-E350186 [cTOS-4-G2]">
      <seq>atcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtagaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaagggtgatccaaacgacaacgtttacacattttacaactcatcatgcatgttcttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90958" stop="88706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90658" g_stop="90622" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="151" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="224" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="291" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89257" g_stop="89002" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="547" r_length="256" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E350186" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90658" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCC</genome_strand>
        <mrna_strand>ATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGGTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292537" ref_strand="+" ref_description="SGN-E292537 [cLET-16-A22]">
      <seq>ggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgtatctactattatctgcattcttattcaacccgtaaaagaaactgctgccttggtaattggattatttgtagacgaatctctgttaaggttgatccaaacgacaacgtttacacattttacaactcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91002" stop="88721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90702" g_stop="90622" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="195" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="268" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="335" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89257" g_stop="89016" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="577" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E292537" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90702" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCAT</genome_strand>
        <mrna_strand>GGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAAAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731736" ref_strand="+" ref_description="SGN-E731736 [LA28AB08]">
      <seq>gtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgttaattgtttgaatttgccttgaatctactattatctgcattcttatttcacccgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92556" stop="88813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92256" g_stop="92212" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="108" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="225" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="504" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="618" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="691" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="758" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89257" g_stop="89113" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="903" r_length="145" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E731736" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92256" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAA</genome_strand>
        <mrna_strand>GTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGAATCTACTATTATCTGCATTCTTATTTCACCCGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730131" ref_strand="+" ref_description="SGN-E730131 [LA23AF10]">
      <seq>ggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttgattattgtagtgtgggtgatgctactcatgntaattgtttgaattttgccttgtatctactattatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92545" stop="88834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92245" g_stop="92212" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="97" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="214" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="493" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="607" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="680" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="747" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89257" g_stop="89134" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="872" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E730131" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92245" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAA-TTTGCCTTGTATCTACTATTATCTGC</genome_strand>
        <mrna_strand>GGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGNTAATTGTTTGAATTTTGCCTTGTATCTACTATTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731556" ref_strand="+" ref_description="SGN-E731556 [LA27CA02]">
      <seq>gctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctncaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagacccaatctgtattcttgattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92559" stop="88897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92259" g_stop="92212" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="111" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="228" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="507" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="621" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="694" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="761" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89257" g_stop="89197" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="823" r_length="62" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E731556" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92259" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGA-CCAATCTGTATTCTTGATTATT</genome_strand>
        <mrna_strand>GCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTNCAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCCAATCTGTATTCTTGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708408" ref_strand="+" ref_description="SGN-E708408 [FA35CG05]">
      <seq>catatcttctaaatcctaactgcggtcgtccttcttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92615" stop="88903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92315" g_stop="92212" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="167" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="284" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="563" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="677" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="750" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="817" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89257" g_stop="89203" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="872" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E708408" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92315" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTG</genome_strand>
        <mrna_strand>CATATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731639" ref_strand="+" ref_description="SGN-E731639 [LA27DA02]">
      <seq>cggctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggcaggagaaagcttaagactgcaaagaccaatctgtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92559" stop="88906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92261" g_stop="92212" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="113" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="230" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="509" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="623" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="696" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="763" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89257" g_stop="89206" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="815" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E731639" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92261" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
          <exon e_start="89257" e_stop="89206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAGGTTAGACTTGTTTCTTTGCTTTCAACTGCATCCAGTATGATTTTTTTTTTATTTCCAGAATGTAATAGTATCAACTTCCCATGTTTTCATGCCAAAAGCAGAGTGTCTTGCTTGTGCCCCCTCTTTCTTGAAATCGCTGCTATCCTATATATAATTAATTTCTATGAAGTAATCATTCACCATTTTCCCTATGTTCTCTTGGAGATGAGGTGTCGGATGTCATGGTAATGTGGCCTATTTGTTTTCTTAGTACAGCTTGATGCATTCACATACTCCTTGCCTTTCTGTTTCCTGTTCTCGTATTTCTGGAAGTGTGAACATCGGTAGTGTTGCAGACGATGATGTAACATGAATATCTTCAGATTATTGAAGAAATCGACTCATATATCTACCAAAAGTTATAGAAGAATGTGCTTATGTTTCACTCAGAGCTGCAAATAGAGTCTTTATAAGTTGTACATGACATTCCGAGCCTACATTTGCGAGCTGCCTCTAATAGTTTGTAAATGATTTTTCTGATTGATTTTCAGTGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTC</genome_strand>
        <mrna_strand>CGGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706015" ref_strand="+" ref_description="SGN-E706015 [FA28DB01]">
      <seq>cttcttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggcgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacctggagtgatgacatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92585" stop="89478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92285" g_stop="92212" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="137" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="533" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="647" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="720" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="787" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E706015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92285" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG</genome_strand>
        <mrna_strand>CTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGCGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340330" ref_strand="+" ref_description="SGN-E340330 [cTOF-2-I18]">
      <seq>cttcttcttcctcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaagtgaggcaaagaggaagaaagcgcacaatggttggttgagtttctgcagttctgcactccacgtggagtgatgacatggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92585" stop="89478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92285" g_stop="92212" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91101" i_length="1111">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="190" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="469" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="583" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="656" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89854" g_stop="89788" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="723" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E340330" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92285" e_stop="92212"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
          <exon e_start="89854" e_stop="89788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAGGTGCTGCCGACTCTTCATACATGTCCCTTTCTGTTTATTACCTTGTTATTCCTAGAAAGAAGAAGTAGCATGGTTTTAATTCCGATGGTTTCTTTATGTTTTTCCTTTCTTTTTTTTTTGTAACTTATTTAGTGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG</genome_strand>
        <mrna_strand>CTTCTTCTTC-CTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG....................................................................................................................................TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264129" ref_strand="+" ref_description="SGN-E264129 [cLEG-64-B3]">
      <seq>ttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatataggaagtcctcaaagcaatggtcatcaaccttgaacaagctagcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91687" stop="89687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="78" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="474" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="588" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90059" g_stop="89987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="661" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E264129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="89987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG</genome_strand>
        <mrna_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449938" ref_strand="+" ref_description="SGN-E449938 [cSTS-7-N20]">
      <seq>ccaaattcccaaatctcctaaaccttaaccgcgacttcattgtcgttcttcttcagtcttactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaatcggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaactcttccagaagataaagcagttgatttatatgtactagaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccggatacttgctgcatatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92624" stop="89732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92288" g_stop="92212" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="118" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="202" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="319" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="598" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="712" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="90032" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="740" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E449938" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92288" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="90032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGA</genome_strand>
        <mrna_strand>GTCGTTCTTCTTCAGTCTTACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACTCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTAGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGGATACTTGCTGCATATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551189" ref_strand="+" ref_description="SGN-E551189 [TUS-55-L1]">
      <seq>cttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttccacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcttgtggaaatgtgatggaccgtatacttgctgcatatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91687" stop="89732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="79" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="475" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="589" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90059" g_stop="90032" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="617" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E551189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="90032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATATAGGA</genome_strand>
        <mrna_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCCACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689002" ref_strand="+" ref_description="SGN-E689002 [t3_tus_55_L01]">
      <seq>cttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttccacgcttccagaagataaagcagttgatttatatgtactggaacgtgctttactctctatgcactcttcctgtggaaatgtgatggaccgtatacttgctgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91687" stop="89736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="79" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="475" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="589" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90059" g_stop="90036" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="613" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E689002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="90036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTATACTTGCTGCATAT</genome_strand>
        <mrna_strand>ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCCACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCCTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCGTATACTTGCTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486868" ref_strand="+" ref_description="SGN-E486868 [cSTE-23-B17]">
      <seq>cgttcttcttcagtcttactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaatcggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaactcttccagaagataaagcagttgatttatatgtactagaacgtgctttactctctatgcactcttcttgtggaaatgtgatggacccgatacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92586" stop="90049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92286" g_stop="92212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="669" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90059" g_stop="90049" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="680" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E486868" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92286" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90351"/>
          <exon e_start="90059" e_stop="90049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTGGTAAGCTCCGTCATATCTACTGTTTTGTGTGTTAGAGGCTTGTATAAAGCCGTTTGAAGCTTTTTGTTCTTCTGTATTCTCTCATTTTTAAATTATAATCTCTTTCAGGCAAAGGATGTTAATTTCTTCTTTAAAATTAATATTCCTTTTGCCTTTTGTGTCATATTATTGCGGAAAACATCCCCCTCTTCTCAGAAGCAGTATTTTTTATGACACTATCGAACAGTTCTCTACTTCTCTCGGTGCTCTTTTTCTCATATTCATCATGTATGGTTTATATGGTTATCGCAGATGGACCGTAT</genome_strand>
        <mrna_strand>CGTTCTTCTTCAGTCTTACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACTCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTAGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG...................................................................................................................................................................................................................................................................................................ATGGACCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439000" ref_strand="+" ref_description="SGN-E439000 [cSTA-10-D19]">
      <seq>attttatcttgtttctctgttgaggatatcagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaactcttccagaagataaagcagttgatttatatgtactagaacgtgctttactctctatgcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91432" stop="90066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91132" g_stop="90984" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="428" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90464" g_stop="90366" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="527" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E439000" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91132" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCT</genome_strand>
        <mrna_strand>ATTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACTCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTAGAACGTGCTTTACTCTCTATGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327626" ref_strand="+" ref_description="SGN-E327626 [cTOC-20-N11]">
      <seq>ttcttcactcatactgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcgaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtacaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacgggtgaatgcggaagcaaggcgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgagagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacgacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactatggactaagctttacttcaacgcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92581" stop="90124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92281" g_stop="92212" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="133" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="250" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="529" r_length="279" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90424" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="570" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E327626" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92281" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCC</genome_strand>
        <mrna_strand>TTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTACAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGGTGAATGCG...................................................................................GAAGCAAGGCGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAGAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACGACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTATGGACTAAGCTTTACTTCAACGCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306133" ref_strand="+" ref_description="SGN-E306133 [cLEY-13-J2]">
      <seq>ctgtccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaagctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaagaacggttttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtagttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaagagtcttcggtgaaagatatattgcttggctttggactagttggagttgacgaagaacgaatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92568" stop="90128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92268" g_stop="92212" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="120" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="237" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="517" r_length="280" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90428" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="554" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E306133" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92268" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGT-GTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGC</genome_strand>
        <mrna_strand>CTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAAGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAAGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTAGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGAGTCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476238" ref_strand="+" ref_description="SGN-E476238 [cSTB-43-F8]">
      <seq>cattgtcgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaacttcacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttacttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92590" stop="90130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92292" g_stop="92212" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="165" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="561" r_length="279" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90429" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="597" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E476238" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92292" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACG</genome_strand>
        <mrna_strand>CATTGTCGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTTCACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464438" ref_strand="+" ref_description="SGN-E464438 [cPRO-18-C1]">
      <seq>cgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaacttcacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaagctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92586" stop="90136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92286" g_stop="92212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90436" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="584" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E464438" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92286" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTTAC</genome_strand>
        <mrna_strand>CGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTTCACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485713" ref_strand="+" ref_description="SGN-E485713 [cSTE-19-O15]">
      <seq>cgttcttcttcagtcttactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaatcggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacaacacagattggtaatgctattggaaaactacacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgaggagttctgccaatcagctggtgctgattgactttggtctaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92586" stop="90138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92286" g_stop="92212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="555" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90438" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="582" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E485713" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92286" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTAAGCTTT</genome_strand>
        <mrna_strand>CGTTCTTCTTCAGTCTTACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486084" ref_strand="+" ref_description="SGN-E486084 [cSTE-21-A5]">
      <seq>cttcattgtcgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaacttcacgatggtggcctagtccatggcgatttgacaacatcaaacatgttactgangagttctgccaatcagctggtgctgattgactttggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92590" stop="90144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92296" g_stop="92212" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="168" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="285" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90622" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="564" r_length="279" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90464" g_stop="90444" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="585" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E486084" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92296" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90622"/>
          <exon e_start="90464" e_stop="90444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTGGTGAACTTTTTCTCTCTTTTCGAAGCTCCTGTAGCTCTCATGATTGATTTGTCTTCAATTTCATTCTTTATTTGCCTTTTTCTCGTGGTTTTGGAGGATGAAGTTCTAAGGTCACCTCAATGCGTTTATTTGTCTCTCTCTGGTACTTTTTCTCCAGGTGCTGATTGACTTTGGTCTA</genome_strand>
        <mrna_strand>CTTC-ATTGTCGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTTCACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGANGAGTTCTGCCAATCAGCTG.............................................................................................................................................................GTGCTGATTGACTTTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482116" ref_strand="+" ref_description="SGN-E482116 [cSTD-21-A5]">
      <seq>cttcattgtcgttcttcttcactcatactgtccgaagctgtgcggtttgtggtggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactanttggagttgacgaagaacagatggctgatattacagcacagattggtaatgctattggaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92590" stop="90395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92296" g_stop="92212" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="168" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="285" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90694" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="492" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E482116" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92296" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTA</genome_strand>
        <mrna_strand>CTTC-ATTGTCGTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGTGGTGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTANTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCACAGATTGGTAATGCTATTGGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244393" ref_strand="+" ref_description="SGN-E244393 [cLEF-3-J13]">
      <seq>aatcttctatatcctaactgcggtcgtccttcttcttcactcatactgtccaaagctgtgcggtctgcggtggcggagctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggcgtattatcaaggaacggttttcaaagaaatacacgcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcatgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgttgacactgttatgcacactctcacctttgaatatgttgaaggtccttcggtgaaagatatattgcttggctgtggactagttggagttgaccaataacgaatggctgatattacaacacagattgggaatgctattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92613" stop="90399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92313" g_stop="92212" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="165" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90699" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="484" r_length="202" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E244393" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92313" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAA</genome_strand>
        <mrna_strand>AATCTTCTATATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCAAAGCTGTGCGGTCTGCGGTGGCGGAGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGCGTATTATCAAGGAACGGTTTTCAAAGAAATACACGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTGTGGACTAGTTGGAGTTGACCAATAACGAATGGCTGATATTACAACACAGATTGGGAATGCTATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444373" ref_strand="+" ref_description="SGN-E444373 [cSTA-42-P3]">
      <seq>tggcggcgctgcttatcttcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgttgaaggtccttctgtgaaagatatattgcttggctttggactagttggagttgacgaagaacagatggctgatattacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92543" stop="90420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92243" g_stop="92212" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="116" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="233" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90720" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="414" r_length="181" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E444373" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92243" e_stop="92212"/>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACAC</genome_strand>
        <mrna_strand>TGGCGGCGCTGCTTATCTTCAACGGCAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTTGAAGGTCCTTCTGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACAGATGGCTGATATTACAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297090" ref_strand="+" ref_description="SGN-E297090 [cLEW-2-M20]">
      <seq>aaatttatcacttctctaaaacttttggggaccaaattcccaaatcttctaaatcctaactgcggtcgtccttcttcttcactcatactgcccgaagctgtgcggtttgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcattggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggcgttcaaagaaatacaggcatccgattttggactcaaagctcactcttaaacggttgaatgcggaagcaaggtgcgtgacaaaagctagacggcttggtgttgtcactccagtgttgtatgctgctgacactgttatgcacactctcacctctgaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92655" stop="90501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92355" g_stop="92212" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91323" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="207" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="324" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90900" g_stop="90801" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="424" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E297090" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92355" e_stop="92212"/>
          <exon e_start="91385" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATCACTTCTCTAAAACTTTTGGGGACCAAATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTG</genome_strand>
        <mrna_strand>AAATTTATCACTTCTCTAAAACTTTTGGGGACCAAATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGCCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGCGTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAAGCAAGGTGCGTGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGCTGACACTGTTATGCACACTCTCACCTCTGAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444377" ref_strand="+" ref_description="SGN-E444377 [cSTA-42-P15]">
      <seq>tcaacggcaaaaagttaattggagatctcacttagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaacggttttcaaagaaatacaggcatccaactttggactcaaagctcactcttaaacggttgaatgcggaggcaaggtgcatgacaaaagctagacggcttggtgttgttactccagtgttgtatgctgttgacactgttatgcatactctcaccttcgaatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91709" stop="90502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91406" g_stop="91323" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="98" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.031" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91100" g_stop="90984" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="215" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90900" g_stop="90802" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="314" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E444377" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91406" e_stop="91323"/>
          <exon e_start="91100" e_stop="90984"/>
          <exon e_start="90900" e_stop="90802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCGGTCGGTGTAAATGATACCTACTCTTTCCTTTAATCTTTCTTAAAACTTGTGTTTCTTAAAGAAATATTGGAATCCTGTCACAGGAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTT</genome_strand>
        <mrna_strand>TTAATTGGAGATCTCACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCT..............................................................................................................................................................................................................................AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCAACTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG...................................................................................GAGGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTTACTCCAGTGTTGTATGCTGTTGACACTGTTATGCATACTCTCACCTTCGAATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358879" ref_strand="+" ref_description="SGN-E358879 [cLHT-24-K11]">
      <seq>aattcccaaatcttctaaatcctaactgcgacattgtcgtccttcttcttcactcatactgtccgaagctgtgcggttcgcggtggcggcgctgctcatcttcaacggcaaaaagatggaaatcaaggcagatggaagtgatggatcgttggttttaatcaagcaaggagctgaggctgtgagtttatatttagttcatataaaactttcctgtaatatttctgatctttttccctcacttttttgggaaagaaattgtgttcgcatgtgtcttttgtttagtttatgagttaataataatttatactactgtttctgccaatgttaatttgatggcaagtagttgttgactctagaatttctgtaacactttatcttgtttctctgttgaggatatcagagggtatttgagtcaacatttgtgggtagtagaaggtgtattatcaaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92621" stop="90749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92321" g_stop="92212" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91385" g_stop="91049" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="452" r_length="337" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E358879" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92321" e_stop="92212"/>
          <exon e_start="91385" e_stop="91049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCCAAATCTTCTAAATCCTAACTGCG-----GTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAGGTGTCTTTCACTATTCTTAAAACTCACAAATTGCTCTTCAGTTTTCATAATCGTTTATGGTTGTTTTTTGCTCTTCTTTTTTCCCCCACGTTTTTATCTCCAAATTCTGCTGCTACTGCTTTGGTGATGCTACAAATTGGGTTTTATACTTGTAAAAATTGAAGCTTTCCTTTAGCTACAATAAACAACTCTTCAACAAAAAATATTCTCCCTCTATTTTAAGCTGTAATTTTAGCTTAGTATCTTTTCTTGATAAAAAAAATTATGTAGAAGAGGTATAGTAAATAAACAATGAAGAACAAAGAAAATATGTGATTCCTAAATATGATTACAAATAAGGAGAAACAGAGGGGAGGCTTGATAGCATTCGATTCGACTAGCTACTAACCTTCTGCCTTAACCCTCCACTAAGAAAATAGAAAATCACAGAAAAACCTTTGTATAAATCAAAGAATTTATTTTCTTCAATAATTATGGTGTCCAAAGCACAGACCTCCATTGATTCATGGGGTATCTGCTACCCCACTAGCATAGGTATTGGGTAACTCTATCCATCAAGGCTTGGATAGATGCACAGGATTCAATTAGTGTTTTTCCCTTTGATTGGATTTGAACCTAAGACCTTATGGTTTTCAACGTAAGCGAACCCCCATGGATGCCAAAGAATTTCCTAAGTGTTCATCTGCATGCACTCTTCATGTTGTACTTGAATTGTTGGAAGAGCTGAAGAACTTTGTTTCGTGGAAGCCTAAAGTTTTGTTATCCCTTTTTTTTAATTTACTTATTTATTATTTTGCCCCTGAAGTTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</genome_strand>
        <mrna_strand>AATTCCCAAATCTTCTAAATCCTAACTGCGACATTGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTCGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATCAAGGCAGATGGAAGTGATGGATCGTTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCCCTCACTTTTTTGGGAAAGAAATTGTGTTCGCATGTGTCTTTTGTTTAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTAATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGTAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318097" ref_strand="+" ref_description="SGN-E318097 [cTOA-29-D5]">
      <seq>ttttcggtgtaaccattagagtttgctaacacaattggtggatggctcctctaaagaaatccaagaaagattctaacaagttgaagaaaatcaaagccaaaaacaagaaaaacaacattgttcctgctgagaacaaaggaactgaatgcgattggtgggatagtttctggcacaagaataaaacatcaaccccaggttctggtgtacctagtgatgaagaggaaggtttcaagtattttttccgtgtttccaacaagacttttgattacatatgttcacttgtaagggaggaccttatctcaagacctccttcaggtctgataaacattgagggaagacttcttagtgttgagaagcaagttgcgattgcattgagaagattggcttctggtgaatcccaagtttcagttggggcatcatttgggggtgggcagtccactgtggctcaaggtacctggagaatcattgaaggactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92978" stop="94827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93278" g_stop="93472" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93473" i_stop="94244" i_length="772">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94245" g_stop="94527" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="478" r_length="283" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E318097" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93278" e_stop="93472"/>
          <exon e_start="94245" e_stop="94527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAGGTCCCTCTCTGCTCAAATTTACATTCTTTAACAACATTTTCTCAAATTCTATTGTTTTTTCGATTCCATTTCACTTATTAATTCGATTGGGGTGTTGGTAAGTGTCAAGATTGGAGCTTTGAAGTCTGATTTCTGCAAATATAGTTCGTTATTTTAACCCTTATTTGTTAAATTCGCAAAGCATTCAAGGGGATTCACGTATATAGAATATGTGCATAAAAGAATTGTTTTTGACAGCCCTTGTAGACAAGATGGCTCCACTCCCTGTAGGTTGAAGGGTTGTGTGAAAAATAATCTAATTATTCATGTTGTTGACTCTAACTAGCTAAATTGATTGACTTACTGCATTTACTTGAAGTCAGGTCTCTAAAATAGGAAGAGAAGAGGTTACTTAAGACTCCTGTTATAAATGATCTCTCTTAATAGTCTAATTTATTCTAGTGAAATCCAAGGCGTTGTAGATATTGTCAAAGGCGGAACGTCTTGTTATTGTTCTAGTTAGCATAATAATTAAAAAAAATCATTCTTAGGTTTGTAATGTGGTTGTTGTCCACTTGTCCTTAGAAAGATGAAGGTTTTCCCACATAAGCAAGTTTGAGAGATGCCAATAGAATGGAGTTGTCTGCTAGGATATTTTATGTAACAACAGTCTCGGAACCCGTCTTATTTCTTTTTAATCTTTGCAACTTTTTCCTGTAAGGTCATTTTGGATCTTTATTTTTTTTCTTTTTGTTGCAGGAATTAACTCACTCTTATACTTTTTATCTTGCAGGTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGA</genome_strand>
        <mrna_strand>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGGTGGGCAGTCCACTGTGGCTCAAGGTACCTGGAGAATCATTGAAGGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698300" ref_strand="+" ref_description="SGN-E698300 [FA05DE06]">
      <seq>ccgttttgctaacacaattggtggatggctcctctaaagaaatccaagaaagattctaacaagttgaagaaaatcaaagccaaaaacaagaaaaacaacattgttcctgctgagaacaaaggaactgaatgcgattggtgggatagtttctggcacaagaataaaacatcaaccccaggttctggtgtacctagtgatgaagaggaaggtttcaagtattttttccgtgtttccaacaagacttttgattacatatgttcacttgtaagggaggaccttatctcaagacctccttcaggtctgataaacattgagggaagacttcttagtgttgagaagcaagttgcgattgcattgagaagattggcttctggtgaatcccaagtttcagttggggcatcatttggggttgggcagtccactgtgtctcaggttacctggagattcattgaggcactggaagaacgtgcaaagcaccatcttaagtggccagaacctagtaagatggatataatcaagtctgagtttgaacaatcatttggtttgcctaactgttgtggagcaattgatgcaactcacatcataatgactcttcctgctattcaaacctcagatgattggtgtgatcaagaaagcaattacagcatgcttttgcaaggtattgtggacagcgagatgcgttttttagacataatgacaggatggcctggggggcatgaccacttcaaggctgttcaagtgctctggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92999" stop="95117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93295" g_stop="93472" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93473" i_stop="94244" i_length="772">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94245" g_stop="94818" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="753" r_length="575" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E698300" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93295" e_stop="93472"/>
          <exon e_start="94245" e_stop="94818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAGGTCCCTCTCTGCTCAAATTTACATTCTTTAACAACATTTTCTCAAATTCTATTGTTTTTTCGATTCCATTTCACTTATTAATTCGATTGGGGTGTTGGTAAGTGTCAAGATTGGAGCTTTGAAGTCTGATTTCTGCAAATATAGTTCGTTATTTTAACCCTTATTTGTTAAATTCGCAAAGCATTCAAGGGGATTCACGTATATAGAATATGTGCATAAAAGAATTGTTTTTGACAGCCCTTGTAGACAAGATGGCTCCACTCCCTGTAGGTTGAAGGGTTGTGTGAAAAATAATCTAATTATTCATGTTGTTGACTCTAACTAGCTAAATTGATTGACTTACTGCATTTACTTGAAGTCAGGTCTCTAAAATAGGAAGAGAAGAGGTTACTTAAGACTCCTGTTATAAATGATCTCTCTTAATAGTCTAATTTATTCTAGTGAAATCCAAGGCGTTGTAGATATTGTCAAAGGCGGAACGTCTTGTTATTGTTCTAGTTAGCATAATAATTAAAAAAAATCATTCTTAGGTTTGTAATGTGGTTGTTGTCCACTTGTCCTTAGAAAGATGAAGGTTTTCCCACATAAGCAAGTTTGAGAGATGCCAATAGAATGGAGTTGTCTGCTAGGATATTTTATGTAACAACAGTCTCGGAACCCGTCTTATTTCTTTTTAATCTTTGCAACTTTTTCCTGTAAGGTCATTTTGGATCTTTATTTTTTTTCTTTTTGTTGCAGGAATTAACTCACTCTTATACTTTTTATCTTGCAGGTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAGGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAGTGACAGGATGGCCT-GGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTA</genome_strand>
        <mrna_strand>CCGTTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAAGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAATGACAGGATGGCCTGGGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702647" ref_strand="+" ref_description="SGN-E702647 [FA19BC02]">
      <seq>gcgccattgacgtctgtcatattgggaacgattctcgtttatataacgcatgctgaaaaacacggtgttgctgtgattggagagctgaagaaagggataaatccaccatcaataatggatctgtcgtttggatcgaaatatatgacaacggctatcaaaactggcatagtcacgggtgtcattgcccttgctgaaggaatagcagtaggtcgaagttttgcaatgttcaagaattaccatatagatggtaacaaagagatgattgcttttgggatgatgaacattgttggctcatgcacttcttgttacctcactactgggccattctcgcgatcagcagtgaacttcaatgctggatgcaaaacagcagtatcaaacattgtcatggcgttggctgtgatggtgacgttgctattgctaacgccattgttccacttcactcctctcgtcgtgttgtcatccattattattgctgccatgctcggactcatcgactataatgctgccattcatctctggcatgtcgacaaattcgacttcctcgtttgcatgagtgcatacattggtgttgtctttggcaacattgaaattggcttagtcatggctgttggcttatcgttgctaagggtattactttctgtagcaaggccaaggactttagtacttggtaatattcccaattctatgatctacagaaatgtggagcaatatccaaatacaaacaacgttccaggcgttctcatacttgacattggagctcctattttcttcactaactcaagctatttaagagagaggatctcaaggtggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99554" stop="97292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99254" g_stop="99180" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99179" i_stop="98870" i_length="310">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98869" g_stop="98753" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="192" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98752" i_stop="98627" i_length="126">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98626" g_stop="98500" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="319" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98499" i_stop="98279" i_length="221">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98278" g_stop="97992" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="606" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97991" i_stop="97910" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97909" g_stop="97719" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="797" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97718" i_stop="97610" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97609" g_stop="97592" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="815" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E702647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99254" e_stop="99180"/>
          <exon e_start="98869" e_stop="98753"/>
          <exon e_start="98626" e_stop="98500"/>
          <exon e_start="98278" e_stop="97992"/>
          <exon e_start="97909" e_stop="97719"/>
          <exon e_start="97609" e_stop="97592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTGGTAACAATTTTTAATTCTATTAGTTAAGTTATGGTTACATTTTAGGAGCTACATTATCAAATACATAACATAAATAAAACATGAACATGAACAAGAGACTTGTCAATTAGTTATCCGTAGCTGTAGTTTTGGTCGCACTCAATGACAAAAAAACGACAACAAATTAAGTGAGTTCAAATTTGTGTCTGTCATGTCACTCACGGGTAGAGCATTGCGGCTTGTGTAGGGATTATTTTATTCCTTAATAATCCGAAAATGCTCAAAATAATATGTCACCCATTTTGTGGAATAATATAATGTAATATTACAGATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCTGTAAGCTGCTTTGTTTCCATCTGCGTTTTTCACTACAAACATACACATATTTTAAAAAGCTTATTTAAATGGTCTTTTTTAGGAAGGCAATGTTATTCGATAAGTAATAAAAATACTTGTGTACAGGAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTGGTATACTCAAATATCCTTGGGCCGAAAGTTCATTTATTTTGATTTGGACTAGCTAGTATCAATGTCACTTGGGCCCATATACCATGTGATTGATTAATCCACAATTTGTCCACTAAAATAAGATATTGGAAAAGAGAACCACACTTACTTGTCAAAATGTTTGATAGCGTATACAAGTTAAACTCGTAGGCTGAAAAATAAATGAATGTGCGTGCGTGCAGGGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCTGTAACTACTACTACTACTACTTCCTAATGTATATGTCACTTAAAAGAAGATAAAGTTAAAACTTTTTGTATTGTAAATGCAGGTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAGGTAATAATTTAACTAATGTATTATATATACTACCAAGTTGTAAGTATACAATACCAACAGTCTCTTTCTACAAATACTAACTATTCGCTAATTCAATTTCCTGTTATAGGATCTCAAGGTGGATTGA</genome_strand>
        <mrna_strand>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTG......................................................................................................................................................................................................................................................................................................................ATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCT..............................................................................................................................GAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTG.............................................................................................................................................................................................................................GGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCT..................................................................................GTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAG.............................................................................................................GATCTCAAGGTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745294" ref_strand="+" ref_description="SGN-E745294 [GI|47105784]">
      <seq>gattgtaagatgtggcagcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgtgcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatctattgtataaatcaataattttttttattacgaaactcgttgttagtatttgtaaggttgatggatatgtgagtgaccaaaagttgatagctgaaatattatattgtataaaggggttatatctgcaaaacatttgccctttggggcaaagttgaaatatatagtagccgcaaaaaagaagtttgagtgaatcagccctacttttcggcctaaatccaaatttggttgctgttttggcaacaattttacttgaagcaaaactcatattgggctttgtcacccatgccttggaaagtcagatcttgggcttcaactagcaggtgtacttgggaaaaatcccaaagtttgtgggtgtactatagttcgacttcatatatagacagattgagaatgaacgttttctttgaaaaaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112792" stop="110753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112493" g_stop="112223" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112222" i_stop="112144" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112143" g_stop="112030" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="385" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112029" i_stop="111961" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111960" g_stop="111803" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="543" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111802" i_stop="111726" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111725" g_stop="111054" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="1215" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1241"/>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E745294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112493" e_stop="112223"/>
          <exon e_start="112143" e_stop="112030"/>
          <exon e_start="111960" e_stop="111803"/>
          <exon e_start="111725" e_stop="111054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</genome_strand>
        <mrna_strand>GATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGTGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACCCATGCCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392098" ref_strand="+" ref_description="SGN-E392098 [TUS-24-D16](-)">
      <seq>gggggctggattagctctctatattctttttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttatgatacggatagtttaatcaagcgctacacttacgatgagtacatctgggctgctgtcggactgtatctggacgttatcaatctattcttatctatattgactatttttagagctgctgaatagtttccttgacaaataaataacaaaaatgttacatttgctctataaagaacattgtttatttattgtataaatcaataatttttatttattacgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112571" stop="111127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112272" g_stop="112223" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112222" i_stop="112144" i_length="79">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112143" g_stop="112030" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="164" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112029" i_stop="111961" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111960" g_stop="111803" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="322" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111802" i_stop="111726" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111725" g_stop="111427" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="622" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E392098" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112272" e_stop="112223"/>
          <exon e_start="112143" e_stop="112030"/>
          <exon e_start="111960" e_stop="111803"/>
          <exon e_start="111725" e_stop="111427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTT-TTTATTACGAAA</genome_strand>
        <mrna_strand>GGGGGCTGGATTAGCTCTCTATATTCTTTTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATTTATTGTATAAATCAATAATTTTTATTTATTACGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392099" ref_strand="+" ref_description="SGN-E392099 [TUS-24-D16]">
      <seq>cagcatacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtacgattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccgcgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgtccattttgttctgcgcatatataatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112778" stop="111345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112478" g_stop="112223" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112222" i_stop="112144" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112143" g_stop="112030" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="370" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112029" i_stop="111961" i_length="69">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111960" g_stop="111803" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="528" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111802" i_stop="111726" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111725" g_stop="111645" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="609" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E392099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112478" e_stop="112223"/>
          <exon e_start="112143" e_stop="112030"/>
          <exon e_start="111960" e_stop="111803"/>
          <exon e_start="111725" e_stop="111645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTAT</genome_strand>
        <mrna_strand>CAGCATACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTACGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCGCGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247658" ref_strand="+" ref_description="SGN-E247658 [cLEF-42-C21]">
      <seq>agcagacgtggaatacgccttaccggaaagatgacgtggaaggcggagcaaggccgttgtatccggcgatgttggagaatccacaactccgttggggttttattcggaaagtttactcaattttgtctctacagttgcttataacaattgcagtgggcgctgttgttgttacggttcacccaattgcacatttttttgtgtcaactggggctggattagctctctatattcttcttatcatcgctcccttcatcacattgagcccgttgtattactatcaccagaaacatccggtgaatttcttgcttcttgggttgtttacagttactctggccttcgctgtaggattaacttgtgccttcaccagtgggaaagtaatattggagtccgtcatattaaccgcagcagttgtgcttagtttgaccatatacacattttgggcagcaaggagaggccacgattttaatttccttggaccattcttatttggtgcccttatggttctcatgttgtttgcctttattcagttactgtttcctctgggtaggctctctgtgatgatctatggctgtttagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112777" stop="111374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112477" g_stop="112223" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112222" i_stop="112144" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112143" g_stop="112030" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="369" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112029" i_stop="111961" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111960" g_stop="111803" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="527" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111802" i_stop="111726" i_length="77">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111725" g_stop="111674" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="579" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E247658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112477" e_stop="112223"/>
          <exon e_start="112143" e_stop="112030"/>
          <exon e_start="111960" e_stop="111803"/>
          <exon e_start="111725" e_stop="111674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCAGTATGTACTCTAAAAATTATATATTTGTTTCATCTTAATTTAGTTGTGCATAAACTGATATATTTGTAACATGTGGCAGCATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTGGTAAGTCTAATTTTTTTTATCTTCTGCTTAATTATTGCTTTATTAAATAGGTCTACTTTGATTTGTCAGGGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAGGTTCAATATTATTACTCGATCCAAGTAATTTACATATATTACTCTCTGTTTGTTTATTTATTTATTTATTGTTGCAGTTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGT</genome_strand>
        <mrna_strand>AGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA...............................................................................CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG.....................................................................GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG.............................................................................TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418342" ref_strand="+" ref_description="SGN-E418342 [STM-27-E24]">
      <seq>aacaacttcatcagctagcttggatatctatttaagtgatcgaattgggactcgtacgccaagtgactatgcaagtggggctgatctttgcttcacaccccacattacacctacaggaagtggtcctatacaagacaatattcagatgaatcccactttttctagtgatctcaatgacagaggtgatgttgtttacaacctccctattttagtggtcataatactttcaaacgttctacataacttttttttttccttttgcttctttaatgagtctgtgcaggatgtagggaactgttattgactaaaaacttttcaacatctaggaaataagagaatattgcttctcaaaagttaaatactcattgttttcaataagtaaccagattaatcacaaactttgtgttttaacctttgactctgttctttctaagctcctaaatgattcttgctgcaattgtattttaagatagcatcagattcctgcatcactggaaccaactatcctcccccgggacacattcataaggtgccatggttcataaattgagtgatttattataagtgattacatgatgaatccattgcgtttatttccccttgtttgtttatcctataacatgtctcatttgttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118275" stop="119452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118575" g_stop="119222" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E418342" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118575" e_stop="119222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAAC-TTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTC-T--TGC-ATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCT-CCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTGAATACAGCAGTGAATCCATTGCGTTTATTTCCCCTTGTTTGCTTATCCTATAGCATATCTTTTTTTGTTTTTCGCT</genome_strand>
        <mrna_strand>AACAACTTCATCAGCTAGCTTGGATATCTATTTAAGTGATCGAATTGGGACTCGTACGCCAAGTGACTATGCAAGTGGGGCTGATCTTTGCTTCACACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAATATTCAGATGAATCCCACTTTTTCTAGTGATCTCAATGACAGAGGTGATGTTGTTTACAACCTCCCTATTTTAGTGGTCATAATACTTTCAAACGTTCTACATAACTTTTTTTTTTCCTTTTGCTTCTTTAATGAGTCTGTGCAGGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAGGAAATAAGAGAATATTGCTTCTCAAAAGTTAAATACTCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGACTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCTGCAATTGTATTTTAAGATAGCATCAGATTCCTGCATCACTGGAACCAACTATCCTCCCCCGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATTTATTATAAGTGA-T---TA---CAT---G-A-TGAATCCATTGCGTTTATTTCCCCTTGTTTGTTTATCCTATAACATGTC-TCATTTGTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441087" ref_strand="+" ref_description="SGN-E441087 [cSTA-29-K5]">
      <seq>aacaacttcttcagctagcttttatatctatttaagtgatcgaattgggactcgtacgccaagtgactatgcaagtggggctgatctttgcttcacaccccacattacacctacaggaagtggtcctatacaagacaatattcagatgaatcccactttttctagtgatctcaatgacagaggtgatgttgtttacaacctccctattttagtggtcataatactttcaaacgttctacataacttttttttttccttttgcttctttaatgagtctgtgcaggatgtagggaactgttattgactaaaaacttttcaacatctaggaaataagagaatattgcttctcaaaagttaaatactcattgttttcaataagtaaccagattaatcacaaactttgtgttttaacctttgactctgttctttctaagctcctaaatgattcttgctgcaattgtattttaagatagcatcagattcctgcatcactggaaccaactatcctcccccgggacacattcataaggtgccatggttcataaattgagtgatttattataagtgattacatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118275" stop="119446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118575" g_stop="119146" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E441087" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118575" e_stop="119146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAAC-TTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTC-T--TGC-ATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCT-CCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTG</genome_strand>
        <mrna_strand>AACAACTTCTTCAGCTAGCTTTTATATCTATTTAAGTGATCGAATTGGGACTCGTACGCCAAGTGACTATGCAAGTGGGGCTGATCTTTGCTTCACACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAATATTCAGATGAATCCCACTTTTTCTAGTGATCTCAATGACAGAGGTGATGTTGTTTACAACCTCCCTATTTTAGTGGTCATAATACTTTCAAACGTTCTACATAACTTTTTTTTTTCCTTTTGCTTCTTTAATGAGTCTGTGCAGGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAGGAAATAAGAGAATATTGCTTCTCAAAAGTTAAATACTCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGACTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCTGCAATTGTATTTTAAGATAGCATCAGATTCCTGCATCACTGGAACCAACTATCCTCCCCCGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATTTATTATAAGTGATTACATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340840" ref_strand="+" ref_description="SGN-E340840 [cTOF-5-P5]">
      <seq>tcggaaactgaggttggggatgcgcaccagatttctgcttatgtcttgaaatgttcggaggccacatcatgttgtagtgtacggatagttgcatgaagtgtgatgatggtagcacttgggacaatatctgtgaaactgccttatctatctaggtttgtctgtaatgtaaatgaagatagaattagtgagaaatagtggtcaagtcatgaaaccttttttgcttttcgtataacagctagtcgccctcttcaatattgattttaggctgcagcatttccctgttgatggaaccattctcaatgatcttgcttacttggaattatacgtccaattttgttgctgggagctggagacaaaccagcggaactgcatgacatagaatgtgaatgggtcatgctctctgatgatccttgacgtttaaaataagctttcctgttccgttgtttgatcgaaataacgtgattgaaggcttaatttcttcttcaagtttgtcatttcagctatttattgactaggactgcattgcaggatactgcacatgcgaagaagtattgggaaagaattgncttctcctctacttatgtttctttccctttatataatacctacctttctnctgtaaaatcttaagttcaagatcatgatagcacatgtatgattatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="+" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119197" stop="120461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119497" g_stop="120161" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="+" ref_id="SGN-E340840" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119497" e_stop="120161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</genome_strand>
        <mrna_strand>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGNCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTNCTGTAAAATCTTAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560270" ref_strand="+" ref_description="SGN-E560270 [19898]">
      <seq>catctcgtgcgggtctgcagtttccagtgggaagaattcaccgtcagctcaagaccagaacctctgcccatggcagggttggagcaacagcagctgtttactctgctgcaattctggagtacctgactgcagaggttcttgaattagctggtaatgcaagcaaggatcttaaagtgaagagaatcactcccaggcacttgcaactggccattcgtggagatgaggaacttgacacccttatcaaaggtaccattgctggtggtggtgtcatccctcacattcacaagtccctcataaacaaaaccaccaaagagtgaaattctcctgtgttatcttagatgtatcttgactaataacatcgcctgtgcttatgtttttttcctctttatctgggttgactaatgacagcactgttggttgtgtttgattagaataacttatctgatgtaatgaacttatgaacatattagtttgatgttttcattttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0021K07-fziac/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0021K07.1" temp_strand="-" temp_description="C06HBa0021K07.1  AC209507.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0021K07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="127433" stop="126351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127120" g_stop="126651" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="490" r_length="470" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0021K07.1" gen_strand="-" ref_id="SGN-E560270" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0021K07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127120" e_stop="126651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATG-TTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAA-TTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTT</genome_strand>
        <mrna_strand>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAATTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACCATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAAGAGTGAAATTCTCCTGTGTTATCTTAGATGTATCTTGACTAATAACATCGCCTGTGCTTATGTTTTTTTCCTCTTTATCTGGGTTGACTAATGACA--GCACTGTTGGTTGTGTTTGATTAGAATAACTTATCTGATGTAATGAACTTATGAACATATTAGTTTGATGTTTTCATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>147</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6311" PGL_stop="1162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6311" e_stop="5872"/>
            <exon e_start="4763" e_stop="4514"/>
            <exon e_start="2636" e_stop="2545"/>
            <exon e_start="1602" e_stop="1162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.887" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6311" e_stop="5872" e_length="440"/>
          </exon>
          <intron i_serial="1" don_prob="0.887" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5871" i_stop="4764" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4763" e_stop="4514" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.801">
            <gDNA_intron_boundary i_start="4513" i_stop="2637" i_length="1877"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2636" e_stop="2545" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.779" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2544" i_stop="1603" i_length="942"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="1602" e_stop="1162" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6311" stop="5872"/>
              <exon start="4763" stop="4514"/>
              <exon start="2636" stop="2545"/>
              <exon start="1602" stop="1281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6289" stop="5872"/>
              <exon start="4763" stop="4514"/>
              <exon start="2636" stop="2557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6289" stop="5872"/>
              <exon start="4763" stop="4561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6286" stop="5872"/>
              <exon start="4763" stop="4655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6274" stop="5872"/>
              <exon start="4763" stop="4514"/>
              <exon start="2636" stop="2545"/>
              <exon start="1602" stop="1517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6238" stop="5872"/>
              <exon start="4763" stop="4514"/>
              <exon start="2636" stop="2545"/>
              <exon start="1602" stop="1509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6238" stop="6036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6236" stop="5872"/>
              <exon start="4763" stop="4514"/>
              <exon start="2636" stop="2545"/>
              <exon start="1602" stop="1498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4695" stop="4514"/>
              <exon start="2636" stop="2545"/>
              <exon start="1602" stop="1162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2573" stop="2545"/>
              <exon start="1602" stop="1234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1575" stop="1234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACGCTCAAACCATAGTAAATAAAAAATAAAAAATGGCTTCTCTTCGTTTTCCATTCTTGTTTCCTCAGCCCCACAAGACTCCGTCTTCCGCCACTTCAGATGCTCCATCTCGCTCCTTCTCCACCGTCGCTGTCGCCGTCGCGTCCGGAGGTTCAGCCCTCGCTGCCGCCGGAGCGATCATTGCCATAACTCAAAGCCCCAAAAATCCGTTTCTGGAAAATGCTATGAATTTTCTACTTTCCAATTTCTCACCTAACAAAAATCATTCATCCCCTTTGTGGGGTTCTGTTTCTCTAGCAGATAACTCAGCTCCGGTCACTGAATCGAGGACCGGAATGGCATTCCCCTCAATTCTGAAAGATACTCAGCGACTCCTTGGAATTGGGCTGCGTAAAAAGGCGGTTTTTGGATTGAAAAACATTGATGTCTATGCTTATG : GTGTGTATGCTGATGATGTTGATGTAAAGAGGTATCTGGCTGAGAAGCATGGACGGCGCTCTGTTTCTGAACTGCAGCAAAAGGAAGAGTTGAGAAATCATCTCATGGAAAACAATATACGCATGACTATCAGGCTTCAAATAGTCTATGGCAGGCTAAGCATTAATTCTGTGCGCAGTGCTTTCGAAGAATCTGTTGGCAGCAGATTACATAAGTTTGGGGGATGTGATAATAAGGAATTGCTTCAAAG : GTTCACTTCCCAGTTTAAGGATGAAATTAAATTACCTCGGGGATCTATCATTGAACTCTCCAGAGATCATGACTACATACTCCACACAACAA : TTGATGGAAAGGAAGTGGGAAGCATACAAAGCAAACTCTTATGCAGATCAATCCTAGACCTATATATTGGTGATGAGTCATTTGATCACAAAGCCAATGAAGATGTCGAGTCGAACTTGGCTTCTCTACTTCACAAGTAGCTACTTCTTTAGCATAAAGAGAATTTTATCAACACGAGGAATCAAGTTGTGGTGATTTATACTTAACGCATGTTAGCTTCTATTGGTTGGATGATTCTCTTTAAATAGTTGAACTAGAGAATTAATCTCTTGCAAACTGAACTTAGATCTATGTTTTATATGCTGATGAGTGGTTTTCTCTACTCCTGTAATATTTTGCTTTGCAATTTTTATAGCATGATTGAAATAAGTATGTTGGCTTGGTTACCAAATTTCTTTTATTTACCTCATTGAAATGCATCTTGGAGTGTTTACTGCTAAG</gDNA_template>
            <first_frame> I  R  S  N  H  S  K  *  K  I  K  N  G  F  S  S  F  S  I  L  V  S  S  A  P  Q  D  S  V  F  R  H  F  R  C  S  I  S  L  L  L  H  R  R  C  R  R  R  V  R  R  F  S  P  R  C  R  R  S  D  H  C  H  N  S  K  P  Q  K  S  V  S  G  K  C  Y  E  F  S  T  F  Q  F  L  T  *  Q  K  S  F  I  P  F  V  G  F  C  F  S  S  R  *  L  S  S  G  H  *  I  E  D  R  N  G  I  P  L  N  S  E  R  Y  S  A  T  P  W  N  W  A  A  *  K  G  G  F  W  I  E  K  H  *  C  L  C  L  W :   C  V  C  *  *  C  *  C  K  E  V  S  G  *  E  A  W  T  A  L  C  F  *  T  A  A  K  G  R  V  E  K  S  S  H  G  K  Q  Y  T  H  D  Y  Q  A  S  N  S  L  W  Q  A  K  H  *  F  C  A  Q  C  F  R  R  I  C  W  Q  Q  I  T  *  V  W  G  M  *  *  *  G  I  A  S  K  :  V  H  F  P  V  *  G  *  N  *  I  T  S  G  I  Y  H  *  T  L  Q  R  S  *  L  H  T  P  H  N  N :   *  W  K  G  S  G  K  H  T  K  Q  T  L  M  Q  I  N  P  R  P  I  Y  W  *  *  V  I  *  S  Q  S  Q  *  R  C  R  V  E  L  G  F  S  T  S  Q  V  A  T  S  L  A  *  R  E  F  Y  Q  H  E  E  S  S  C  G  D  L  Y  L  T  H  V  S  F  Y  W  L  D  D  S  L  *  I  V  E  L  E  N  *  S  L  A  N  *  T  *  I  Y  V  L  Y  A  D  E  W  F  S  L  L  L  *  Y  F  A  L  Q  F  L  *  H  D  *  N  K  Y  V  G  L  V  T  K  F  L  L  F  T  S  L  K  C  I  L  E  C  L  L  L   </first_frame>
            <second_frame>  Y  A  Q  T  I  V  N  K  K  *  K  M  A  S  L  R  F  P  F  L  F  P  Q  P  H  K  T  P  S  S  A  T  S  D  A  P  S  R  S  F  S  T  V  A  V  A  V  A  S  G  G  S  A  L  A  A  A  G  A  I  I  A  I  T  Q  S  P  K  N  P  F  L  E  N  A  M  N  F  L  L  S  N  F  S  P  N  K  N  H  S  S  P  L  W  G  S  V  S  L  A  D  N  S  A  P  V  T  E  S  R  T  G  M  A  F  P  S  I  L  K  D  T  Q  R  L  L  G  I  G  L  R  K  K  A  V  F  G  L  K  N  I  D  V  Y  A  Y   : G  V  Y  A  D  D  V  D  V  K  R  Y  L  A  E  K  H  G  R  R  S  V  S  E  L  Q  Q  K  E  E  L  R  N  H  L  M  E  N  N  I  R  M  T  I  R  L  Q  I  V  Y  G  R  L  S  I  N  S  V  R  S  A  F  E  E  S  V  G  S  R  L  H  K  F  G  G  C  D  N  K  E  L  L  Q  R :   F  T  S  Q  F  K  D  E  I  K  L  P  R  G  S  I  I  E  L  S  R  D  H  D  Y  I  L  H  T  T   : I  D  G  K  E  V  G  S  I  Q  S  K  L  L  C  R  S  I  L  D  L  Y  I  G  D  E  S  F  D  H  K  A  N  E  D  V  E  S  N  L  A  S  L  L  H  K  *  L  L  L  *  H  K  E  N  F  I  N  T  R  N  Q  V  V  V  I  Y  T  *  R  M  L  A  S  I  G  W  M  I  L  F  K  *  L  N  *  R  I  N  L  L  Q  T  E  L  R  S  M  F  Y  M  L  M  S  G  F  L  Y  S  C  N  I  L  L  C  N  F  Y  S  M  I  E  I  S  M  L  A  W  L  P  N  F  F  Y  L  P  H  *  N  A  S  W  S  V  Y  C  *  </second_frame>
            <third_frame>   T  L  K  P  *  *  I  K  N  K  K  W  L  L  F  V  F  H  S  C  F  L  S  P  T  R  L  R  L  P  P  L  Q  M  L  H  L  A  P  S  P  P  S  L  S  P  S  R  P  E  V  Q  P  S  L  P  P  E  R  S  L  P  *  L  K  A  P  K  I  R  F  W  K  M  L  *  I  F  Y  F  P  I  S  H  L  T  K  I  I  H  P  L  C  G  V  L  F  L  *  Q  I  T  Q  L  R  S  L  N  R  G  P  E  W  H  S  P  Q  F  *  K  I  L  S  D  S  L  E  L  G  C  V  K  R  R  F  L  D  *  K  T  L  M  S  M  L  M  :  V  C  M  L  M  M  L  M  *  R  G  I  W  L  R  S  M  D  G  A  L  F  L  N  C  S  K  R  K  S  *  E  I  I  S  W  K  T  I  Y  A  *  L  S  G  F  K  *  S  M  A  G  *  A  L  I  L  C  A  V  L  S  K  N  L  L  A  A  D  Y  I  S  L  G  D  V  I  I  R  N  C  F  K   : G  S  L  P  S  L  R  M  K  L  N  Y  L  G  D  L  S  L  N  S  P  E  I  M  T  T  Y  S  T  Q  Q  :  L  M  E  R  K  W  E  A  Y  K  A  N  S  Y  A  D  Q  S  *  T  Y  I  L  V  M  S  H  L  I  T  K  P  M  K  M  S  S  R  T  W  L  L  Y  F  T  S  S  Y  F  F  S  I  K  R  I  L  S  T  R  G  I  K  L  W  *  F  I  L  N  A  C  *  L  L  L  V  G  *  F  S  L  N  S  *  T  R  E  L  I  S  C  K  L  N  L  D  L  C  F  I  C  *  *  V  V  F  S  T  P  V  I  F  C  F  A  I  F  I  A  *  L  K  *  V  C  W  L  G  Y  Q  I  S  F  I  Y  L  I  E  M  H  L  G  V  F  T  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6280" stop="5872"/>
                    <exon start="4763" stop="4514"/>
                    <exon start="2636" stop="2545"/>
                    <exon start="1602" stop="1463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMASLRFPFLFPQPHKTPSSATSDAPSRSFSTVAVAVASGGSALAAAGAIIAITQSPKNPFLENAMNFLLSNFSPNKNHSSPLWGSVSLADNSAPVTESRTGMAFPSILKDTQRLLGIGLRKKAVFGLKNIDVYAYGVYADDVDVKRYLAEKHGRRSVSELQQKEELRNHLMENNIRMTIRLQIVYGRLSINSVRSAFEESVGSRLHKFGGCDNKELLQRFTSQFKDEIKLPRGSIIELSRDHDYILHTTIDGKEVGSIQSKLLCRSILDLYIGDESFDHKANEDVESNLASLLHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10505" PGL_stop="7872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10505" e_stop="10486"/>
            <exon e_start="9361" e_stop="9298"/>
            <exon e_start="9216" e_stop="9137"/>
            <exon e_start="8715" e_stop="8651"/>
            <exon e_start="8567" e_stop="8450"/>
            <exon e_start="8373" e_stop="8249"/>
            <exon e_start="8141" e_stop="7872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.030" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.184" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10505" e_stop="10486" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10485" i_stop="9362" i_length="1124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9361" e_stop="9298" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.030" acc_prob="0.981">
            <gDNA_intron_boundary i_start="9297" i_stop="9217" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9216" e_stop="9137" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9136" i_stop="8716" i_length="421"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8715" e_stop="8651" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.731" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8650" i_stop="8568" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8567" e_stop="8450" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.184" acc_prob="0.908">
            <gDNA_intron_boundary i_start="8449" i_stop="8374" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8373" e_stop="8249" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.857" acc_prob="0.968">
            <gDNA_intron_boundary i_start="8248" i_stop="8142" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8141" e_stop="7872" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10505" stop="10486"/>
              <exon start="9361" stop="9298"/>
              <exon start="9216" stop="9137"/>
              <exon start="8715" stop="8651"/>
              <exon start="8567" stop="8450"/>
              <exon start="8373" stop="8249"/>
              <exon start="8141" stop="7872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8552" stop="8450"/>
              <exon start="8373" stop="8249"/>
              <exon start="8141" stop="7952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCATCTCCTACACCTCAG : GTCTATCTGGGTGAGCTGTATGTAAATAATTCTACGCTATCTGATGTGACATTTTTAGTCGAAG : GCAAACGGTTTTATGCCCACAGAATTTGTTTACTTGCTTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGCTACAGG : GAGAGAGATGCCAAAGATATAGAGATTCCCAACATTCCATGGGATGTTTTTGAGTTGATGATGAG : GTACATATACACGGGATCTGTTGATGTTAATATGGGTGTTGCAAAGGATCTTCTAAGGGTTGCTGATCAATATCTTCTTGAGGGCCTTAAGCGTCTGTGCGAGTATGCAATTGCCCAG : GATATCTCAGTGGAAAATGTCTCTCTGATGTTTGAGTTATCAGAGGCTTTCAATGCATTGTCATTAAGAAATGCTTGCATTGTATTCACATTGGAGAAGTTCGACAAATTAAGTGTCATGCCATG : GTATTCGCAATTGATTCAACTTATATTACCTGAGACACGTGCGTACTTTGCTAGGGTGCTGAGCAGGCCAATTCAAGCTGACCTCTGATTTAGGTTCATTTTTATTCTTTGATTAGATGTAGTATATGATGTAAATTGTACAGGAAGTGGGTTTTATTCCACTCGTCTCTAATTGCAAGAGTTATGTGTCATTTCTCATCGCTTGCAATTCCATATTTGTTGTGACGTTTAATGTAGCGTATGAAGTTCAGTTGCAACGCCTGCCATGCT</gDNA_template>
            <first_frame> L  H  L  L  H  L  R :   S  I  W  V  S  C  M  *  I  I  L  R  Y  L  M  *  H  F  *  S  K  :  A  N  G  F  M  P  T  E  F  V  Y  L  L  L  L  M  H  F  A  Q  C  L  M  V  A  T  G :   R  E  M  P  K  I  *  R  F  P  T  F  H  G  M  F  L  S  *  *  *   : G  T  Y  T  R  D  L  L  M  L  I  W  V  L  Q  R  I  F  *  G  L  L  I  N  I  F  L  R  A  L  S  V  C  A  S  M  Q  L  P  R :   I  S  Q  W  K  M  S  L  *  C  L  S  Y  Q  R  L  S  M  H  C  H  *  E  M  L  A  L  Y  S  H  W  R  S  S  T  N  *  V  S  C  H   : G  I  R  N  *  F  N  L  Y  Y  L  R  H  V  R  T  L  L  G  C  *  A  G  Q  F  K  L  T  S  D  L  G  S  F  L  F  F  D  *  M  *  Y  M  M  *  I  V  Q  E  V  G  F  I  P  L  V  S  N  C  K  S  Y  V  S  F  L  I  A  C  N  S  I  F  V  V  T  F  N  V  A  Y  E  V  Q  L  Q  R  L  P  C  </first_frame>
            <second_frame>  S  I  S  Y  T  S   : G  L  S  G  *  A  V  C  K  *  F  Y  A  I  *  C  D  I  F  S  R  R :   Q  T  V  L  C  P  Q  N  L  F  T  C  F  F  *  C  I  S  R  N  V  *  W  W  L  Q   : G  E  R  C  Q  R  Y  R  D  S  Q  H  S  M  G  C  F  *  V  D  D  E  :  V  H  I  H  G  I  C  *  C  *  Y  G  C  C  K  G  S  S  K  G  C  *  S  I  S  S  *  G  P  *  A  S  V  R  V  C  N  C  P   : G  Y  L  S  G  K  C  L  S  D  V  *  V  I  R  G  F  Q  C  I  V  I  K  K  C  L  H  C  I  H  I  G  E  V  R  Q  I  K  C  H  A  M  :  V  F  A  I  D  S  T  Y  I  T  *  D  T  C  V  L  C  *  G  A  E  Q  A  N  S  S  *  P  L  I  *  V  H  F  Y  S  L  I  R  C  S  I  *  C  K  L  Y  R  K  W  V  L  F  H  S  S  L  I  A  R  V  M  C  H  F  S  S  L  A  I  P  Y  L  L  *  R  L  M  *  R  M  K  F  S  C  N  A  C  H  A </second_frame>
            <third_frame>   P  S  P  T  P  Q  :  V  Y  L  G  E  L  Y  V  N  N  S  T  L  S  D  V  T  F  L  V  E   : G  K  R  F  Y  A  H  R  I  C  L  L  A  S  S  D  A  F  R  A  M  F  D  G  G  Y  R  :  E  R  D  A  K  D  I  E  I  P  N  I  P  W  D  V  F  E  L  M  M  R :   Y  I  Y  T  G  S  V  D  V  N  M  G  V  A  K  D  L  L  R  V  A  D  Q  Y  L  L  E  G  L  K  R  L  C  E  Y  A  I  A  Q  :  D  I  S  V  E  N  V  S  L  M  F  E  L  S  E  A  F  N  A  L  S  L  R  N  A  C  I  V  F  T  L  E  K  F  D  K  L  S  V  M  P  W :   Y  S  Q  L  I  Q  L  I  L  P  E  T  R  A  Y  F  A  R  V  L  S  R  P  I  Q  A  D  L  *  F  R  F  I  F  I  L  *  L  D  V  V  Y  D  V  N  C  T  G  S  G  F  Y  S  T  R  L  *  L  Q  E  L  C  V  I  S  H  R  L  Q  F  H  I  C  C  D  V  *  C  S  V  *  S  S  V  A  T  P  A  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10503" stop="10486"/>
                    <exon start="9361" stop="9298"/>
                    <exon start="9216" stop="9137"/>
                    <exon start="8715" stop="8651"/>
                    <exon start="8567" stop="8450"/>
                    <exon start="8373" stop="8249"/>
                    <exon start="8141" stop="8054"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPTPQVYLGELYVNNSTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYRERDAKDIEIPNIPWDVFELMMRYIYTGSVDVNMGVAKDLLRVADQYLLEGLKRLCEYAIAQDISVENVSLMFELSEAFNALSLRNACIVFTLEKFDKLSVMPWYSQLIQLILPETRAYFARVLSRPIQADL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19293" PGL_stop="20104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19293" e_stop="19886"/>
            <exon e_start="19985" e_stop="20104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.921"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="19293" e_stop="19886" e_length="594"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="19887" i_stop="19984" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="19985" e_stop="20104" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19293" stop="19886"/>
              <exon start="19985" stop="20104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315124" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGTCGCGACAACTCGAAAAATAATTAATTGATTCAATTTTAACAAAATTAAAAAATAAACGAGTTTTAAAAAAGAGTCGCCACCTAATTTTTTAGGAAAACTAGGAAACCAATTATTAATCTACGAAACCAAATTGATTCTTAGGTAAGGGGTTCAAGTTATTCCGAAGGGAAGGGGTTAGGCACCCTTCGGAATCCACAAATGTGGTTCCCGACTGAATTCATTTTTTTTTCAAATTGAGGAAAGATATAAAATAAACACATATAATAAACACACAATATACACAATAAAGCAATAATTATCGGCCTAAAGTTTGTCTAACGTCAATATTCACAAAATAATGAATGAAATACAATTCGAACTTTTCGAATAATTTCAATGAGAAGCACCTCCGGGTACCTGTAAAGACACTTAGTAAAAGAGTTATTGTCAAAATAATATAAATAAAAATAAATAACTCAAATAATAACTAAAATAAAAATCCGTCTTATTAACATGGGAGGCCTTGGAAATCGACGGTTATTTCTTCATCGGCCACTTTCAACATATAAAATATATAAACTTGAATTGAAATTCCGTCCTTTTAAAATG : GGAAGACCTCTAAACCCGACGGATAGATTTTTCATCGGCCTTTCAACATATAAAATATATAAACTTGAATTAAAATTCCGTCTTTTTAAAATGGGGAGGCCTCTAAGCCCGACGGATAGA</gDNA_template>
            <first_frame> K  R  R  D  N  S  K  N  N  *  L  I  Q  F  *  Q  N  *  K  I  N  E  F  *  K  R  V  A  T  *  F  F  R  K  T  R  K  P  I  I  N  L  R  N  Q  I  D  S  *  V  R  G  S  S  Y  S  E  G  K  G  L  G  T  L  R  N  P  Q  M  W  F  P  T  E  F  I  F  F  S  N  *  G  K  I  *  N  K  H  I  *  *  T  H  N  I  H  N  K  A  I  I  I  G  L  K  F  V  *  R  Q  Y  S  Q  N  N  E  *  N  T  I  R  T  F  R  I  I  S  M  R  S  T  S  G  Y  L  *  R  H  L  V  K  E  L  L  S  K  *  Y  K  *  K  *  I  T  Q  I  I  T  K  I  K  I  R  L  I  N  M  G  G  L  G  N  R  R  L  F  L  H  R  P  L  S  T  Y  K  I  Y  K  L  E  L  K  F  R  P  F  K  M  :  G  R  P  L  N  P  T  D  R  F  F  I  G  L  S  T  Y  K  I  Y  K  L  E  L  K  F  R  L  F  K  M  G  R  P  L  S  P  T  D  R </first_frame>
            <second_frame>  N  V  A  T  T  R  K  I  I  N  *  F  N  F  N  K  I  K  K  *  T  S  F  K  K  E  S  P  P  N  F  L  G  K  L  G  N  Q  L  L  I  Y  E  T  K  L  I  L  R  *  G  V  Q  V  I  P  K  G  R  G  *  A  P  F  G  I  H  K  C  G  S  R  L  N  S  F  F  F  Q  I  E  E  R  Y  K  I  N  T  Y  N  K  H  T  I  Y  T  I  K  Q  *  L  S  A  *  S  L  S  N  V  N  I  H  K  I  M  N  E  I  Q  F  E  L  F  E  *  F  Q  *  E  A  P  P  G  T  C  K  D  T  *  *  K  S  Y  C  Q  N  N  I  N  K  N  K  *  L  K  *  *  L  K  *  K  S  V  L  L  T  W  E  A  L  E  I  D  G  Y  F  F  I  G  H  F  Q  H  I  K  Y  I  N  L  N  *  N  S  V  L  L  K  W :   E  D  L  *  T  R  R  I  D  F  S  S  A  F  Q  H  I  K  Y  I  N  L  N  *  N  S  V  F  L  K  W  G  G  L  *  A  R  R  I   </second_frame>
            <third_frame>   T  S  R  Q  L  E  K  *  L  I  D  S  I  L  T  K  L  K  N  K  R  V  L  K  K  S  R  H  L  I  F  *  E  N  *  E  T  N  Y  *  S  T  K  P  N  *  F  L  G  K  G  F  K  L  F  R  R  E  G  V  R  H  P  S  E  S  T  N  V  V  P  D  *  I  H  F  F  F  K  L  R  K  D  I  K  *  T  H  I  I  N  T  Q  Y  T  Q  *  S  N  N  Y  R  P  K  V  C  L  T  S  I  F  T  K  *  *  M  K  Y  N  S  N  F  S  N  N  F  N  E  K  H  L  R  V  P  V  K  T  L  S  K  R  V  I  V  K  I  I  *  I  K  I  N  N  S  N  N  N  *  N  K  N  P  S  Y  *  H  G  R  P  W  K  S  T  V  I  S  S  S  A  T  F  N  I  *  N  I  *  T  *  I  E  I  P  S  F  *  N   : G  K  T  S  K  P  D  G  *  I  F  H  R  P  F  N  I  *  N  I  *  T  *  I  K  I  P  S  F  *  N  G  E  A  S  K  P  D  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19749" stop="19886"/>
                    <exon start="19985" stop="20104"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITQIITKIKIRLINMGGLGNRRLFLHRPLSTYKIYKLELKFRPFKMGRPLNPTDRFFIGLSTYKIYKLELKFRLFKMGRPLSPTDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41056" PGL_stop="45956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41056" e_stop="41155"/>
            <exon e_start="41495" e_stop="41563"/>
            <exon e_start="41653" e_stop="41741"/>
            <exon e_start="41856" e_stop="42159"/>
            <exon e_start="42234" e_stop="42417"/>
            <exon e_start="42770" e_stop="42984"/>
            <exon e_start="43063" e_stop="43183"/>
            <exon e_start="43329" e_stop="43441"/>
            <exon e_start="43635" e_stop="43861"/>
            <exon e_start="43946" e_stop="44061"/>
            <exon e_start="44614" e_stop="44712"/>
            <exon e_start="44823" e_stop="45059"/>
            <exon e_start="45129" e_stop="45240"/>
            <exon e_start="45352" e_stop="45540"/>
            <exon e_start="45729" e_stop="45956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.986" e_score="0.978"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="0.967"/>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.983" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41056" e_stop="41155" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="41156" i_stop="41494" i_length="339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41495" e_stop="41563" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.833">
            <gDNA_intron_boundary i_start="41564" i_stop="41652" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="41653" e_stop="41741" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.875" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41742" i_stop="41855" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="41856" e_stop="42159" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42160" i_stop="42233" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42234" e_stop="42417" e_length="184"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="42418" i_stop="42769" i_length="352"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42770" e_stop="42984" e_length="215"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="42985" i_stop="43062" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="0.967">
            <gDNA_exon_boundary e_start="43063" e_stop="43183" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="43184" i_stop="43328" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43329" e_stop="43441" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="43442" i_stop="43634" i_length="193"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="43635" e_stop="43861" e_length="227"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43862" i_stop="43945" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43946" e_stop="44061" e_length="116"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44062" i_stop="44613" i_length="552"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44614" e_stop="44712" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44713" i_stop="44822" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="0.996">
            <gDNA_exon_boundary e_start="44823" e_stop="45059" e_length="237"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.983">
            <gDNA_intron_boundary i_start="45060" i_stop="45128" i_length="69"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45129" e_stop="45240" e_length="112"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45241" i_stop="45351" i_length="111"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45352" e_stop="45540" e_length="189"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45541" i_stop="45728" i_length="188"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="45729" e_stop="45956" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41056" stop="41155"/>
              <exon start="41495" stop="41563"/>
              <exon start="41653" stop="41741"/>
              <exon start="41856" stop="42159"/>
              <exon start="42234" stop="42417"/>
              <exon start="42770" stop="42984"/>
              <exon start="43063" stop="43183"/>
              <exon start="43329" stop="43441"/>
              <exon start="43635" stop="43861"/>
              <exon start="43946" stop="44061"/>
              <exon start="44614" stop="44712"/>
              <exon start="44823" stop="45059"/>
              <exon start="45129" stop="45240"/>
              <exon start="45352" stop="45540"/>
              <exon start="45729" stop="45956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCGATCTCAGCTTCTTTTTTAAGATTTAGCCTCACTGCTCACTATCAACCTTCTCCTTCTTCTTCTCCACCAAATCAACCTTTCAAATTCCTTAAAA : GCAACAGAGAACATGTTGAATTCAATCGAATTTTGCAATGTCATGCTGTTTCTAGACGTCGTACAAAAG : ATTACAAAGAGGTGCAAAGTGGTTCGTTGCCGGTTATCAAGTGGGACGACATCGCAGAGGAAGTGGACGTGGAAACACACACACTTGAG : GTGTACGATCCATCCTCCAACGAGGACCATATCGATGCTATTCGATCGATGCTAGGATCAATGGGAGACGGAGAAATAAGCGTCTCGGCCTATGACACAGCATGGGTTGCCATGGTGAAAGATGTGAAGGGAACTGAAACTCCTCAGTTCCCTTCAAGCCTTGAGTGGATTGCGAACAATCAGTTGGCTGATGGTTCATGGGGTGACAACTCCATTTTCTTGGTTTATGATCGTGTCATCAACACATTGGCTTGTGTTATTGCCTTGAAGTCATGGAACTTGCATCCTGACAAGATTCTACTTG : GAATGTCGTTTATGAGAGAGAATTTGAGCAGGATTGGTGATGAGAATGCAGAGCACATGCCTATAGGCTTCGAAGTGGCATTTCCTTCACTCATTGAGATTGCTAAAAAGTTAGGCTTAGATTTTCCTTATGATTCTCCCGTCTTGCAAGACATCTATGCCAGTAGACAACTAAAGCTTACAAG : GATACCAAAGGACATCATGCACAAAGTCCCCACAACTTTACTCCACAGTTTGGAAGGAATGACAGATTTGGACTGGCAAAAGTTGCTTCAATTTCAGTGCACTGATGGCTCTTTTCTCTTCTCTCCATCTTCCACCGCATATGCACTTATGCAAACTCAAGATCATAATTGTCTCAATTATCTCAAAAATGCTGTCCACAAATTCAACGGCGGAG : TTCCAAATGTGTATCCAGTGGACCTATTTGAACATATTTGGACCGTTGATCGGTTGCAAAGGCTTGGAATTTCTCGGTATTTTGAGCTAGAAATAAAAGAGTGCATTGATTACGTTAGCAG : ATATTGGACAAATAAAGGAATCTGCTGGGCTAGAAATTCCCCAGTTCAAGACATTGATGACACGGCTATGGCTTTTAGACTTTTGCGCTTGCATGGCTACGCTGTTTCTGCTG : ACGTATTCAAACATTTTGAGAGCAAAGGCGAATTTTTCTGCTTCGTGGGGCAATCAAATCAAGCAGTGACAGGAATGTATAATCTTTATAGGGCATCTCATGTAATGTTCTCAGGAGAGAAAATACTTGAAAATGCAAAAATATTCACTTCTAATTATCTAAGAGAAAAACGAGCTCAAAATCAACTGCTAGACAAGTGGATCATTACTAAAGATTTACCTGGAGAG : GTGGGATATGCATTAGATGTGCCATGGTATGCTAGCCTACCCCGCCTAGAAACAAGGTTCTTTTTAGAACATTATGGTGGTGAAGATGACGTGTGGATTGGCAAAACATTGTACAG : GATGCCATTGGTTAACAATAGCCTATACCTAGAGCTAGCGAAATCGGACTATAACAATTGCCAAGCTTTGCACCAGTTCGAGTGGAGAAGAATTCGCAA : GTGGTACTACGAATGCGGGCTAGGAGAGTTTGGATTAAGTGAAAAAAGGTTGTTGGTTACGTACTATTTAGGCAGTGCTAGTATATTTGAGGCACAAAGGTCGACCGAGCGAATGGCTTGGGTCAAAACCGCAGCTCTTATGGACTGTGTGAGGTCTTGTTTTGGCTCCCCACAAGTATCTGCAGCTGCATTTCTTTGCGAATTCGCACACTACTCTAGCACCGCTCTGAATTCGAG : GTACAACACAGAAGATAGGCTCGTTGGGGTCATTCTTGGAACCCTAAATCATCTCTCACTGAGTGCCTTATTAACACATGGCAGAGACATCCATCACTACTTGCGTCATGCT : TGGGAAAATTGGCTACTGACGGTAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTGCTGAACTCATAATTCGCACCTTAAATTTGTGCAGTGTTCATTGGATATCGGAGGAGATATTGTTGTCCCATCCAACTTACCAAAAGCTATTGGAAATTACCAATAGAGTTTCTCACCGACTCCGTCTCTACAAG : GGACACAGTGAAAAGCAGGTAGGAATGTTGACTTTTAGTGAAGAAATAGAAGGTGACATGCAACAGCTAGCAGAGCTCGTGCTATCTCATTCAGATGCTTCCGAATTGGATGCCAATATCAAAGACACTTTTCTCACTGTTGCCAAAAGTTTTTACTACTCAGCTTATTGTGATGATCGAACAATTAACTTTCACATAGCCAAAGTGCTATTTGAAAGAGTAGTTTAA</gDNA_template>
            <first_frame> M  S  I  S  A  S  F  L  R  F  S  L  T  A  H  Y  Q  P  S  P  S  S  S  P  P  N  Q  P  F  K  F  L  K   : S  N  R  E  H  V  E  F  N  R  I  L  Q  C  H  A  V  S  R  R  R  T  K   : D  Y  K  E  V  Q  S  G  S  L  P  V  I  K  W  D  D  I  A  E  E  V  D  V  E  T  H  T  L  E  :  V  Y  D  P  S  S  N  E  D  H  I  D  A  I  R  S  M  L  G  S  M  G  D  G  E  I  S  V  S  A  Y  D  T  A  W  V  A  M  V  K  D  V  K  G  T  E  T  P  Q  F  P  S  S  L  E  W  I  A  N  N  Q  L  A  D  G  S  W  G  D  N  S  I  F  L  V  Y  D  R  V  I  N  T  L  A  C  V  I  A  L  K  S  W  N  L  H  P  D  K  I  L  L   : G  M  S  F  M  R  E  N  L  S  R  I  G  D  E  N  A  E  H  M  P  I  G  F  E  V  A  F  P  S  L  I  E  I  A  K  K  L  G  L  D  F  P  Y  D  S  P  V  L  Q  D  I  Y  A  S  R  Q  L  K  L  T  R :   I  P  K  D  I  M  H  K  V  P  T  T  L  L  H  S  L  E  G  M  T  D  L  D  W  Q  K  L  L  Q  F  Q  C  T  D  G  S  F  L  F  S  P  S  S  T  A  Y  A  L  M  Q  T  Q  D  H  N  C  L  N  Y  L  K  N  A  V  H  K  F  N  G  G   : V  P  N  V  Y  P  V  D  L  F  E  H  I  W  T  V  D  R  L  Q  R  L  G  I  S  R  Y  F  E  L  E  I  K  E  C  I  D  Y  V  S  R :   Y  W  T  N  K  G  I  C  W  A  R  N  S  P  V  Q  D  I  D  D  T  A  M  A  F  R  L  L  R  L  H  G  Y  A  V  S  A   : D  V  F  K  H  F  E  S  K  G  E  F  F  C  F  V  G  Q  S  N  Q  A  V  T  G  M  Y  N  L  Y  R  A  S  H  V  M  F  S  G  E  K  I  L  E  N  A  K  I  F  T  S  N  Y  L  R  E  K  R  A  Q  N  Q  L  L  D  K  W  I  I  T  K  D  L  P  G  E  :  V  G  Y  A  L  D  V  P  W  Y  A  S  L  P  R  L  E  T  R  F  F  L  E  H  Y  G  G  E  D  D  V  W  I  G  K  T  L  Y  R :   M  P  L  V  N  N  S  L  Y  L  E  L  A  K  S  D  Y  N  N  C  Q  A  L  H  Q  F  E  W  R  R  I  R  K :   W  Y  Y  E  C  G  L  G  E  F  G  L  S  E  K  R  L  L  V  T  Y  Y  L  G  S  A  S  I  F  E  A  Q  R  S  T  E  R  M  A  W  V  K  T  A  A  L  M  D  C  V  R  S  C  F  G  S  P  Q  V  S  A  A  A  F  L  C  E  F  A  H  Y  S  S  T  A  L  N  S  R :   Y  N  T  E  D  R  L  V  G  V  I  L  G  T  L  N  H  L  S  L  S  A  L  L  T  H  G  R  D  I  H  H  Y  L  R  H  A  :  W  E  N  W  L  L  T  V  G  E  G  E  G  E  G  E  G  G  A  E  L  I  I  R  T  L  N  L  C  S  V  H  W  I  S  E  E  I  L  L  S  H  P  T  Y  Q  K  L  L  E  I  T  N  R  V  S  H  R  L  R  L  Y  K  :  G  H  S  E  K  Q  V  G  M  L  T  F  S  E  E  I  E  G  D  M  Q  Q  L  A  E  L  V  L  S  H  S  D  A  S  E  L  D  A  N  I  K  D  T  F  L  T  V  A  K  S  F  Y  Y  S  A  Y  C  D  D  R  T  I  N  F  H  I  A  K  V  L  F  E  R  V  V  * </first_frame>
            <second_frame>  C  R  S  Q  L  L  F  *  D  L  A  S  L  L  T  I  N  L  L  L  L  L  L  H  Q  I  N  L  S  N  S  L  K  :  A  T  E  N  M  L  N  S  I  E  F  C  N  V  M  L  F  L  D  V  V  Q  K  :  I  T  K  R  C  K  V  V  R  C  R  L  S  S  G  T  T  S  Q  R  K  W  T  W  K  H  T  H  L  R :   C  T  I  H  P  P  T  R  T  I  S  M  L  F  D  R  C  *  D  Q  W  E  T  E  K  *  A  S  R  P  M  T  Q  H  G  L  P  W  *  K  M  *  R  E  L  K  L  L  S  S  L  Q  A  L  S  G  L  R  T  I  S  W  L  M  V  H  G  V  T  T  P  F  S  W  F  M  I  V  S  S  T  H  W  L  V  L  L  P  *  S  H  G  T  C  I  L  T  R  F  Y  L  :  E  C  R  L  *  E  R  I  *  A  G  L  V  M  R  M  Q  S  T  C  L  *  A  S  K  W  H  F  L  H  S  L  R  L  L  K  S  *  A  *  I  F  L  M  I  L  P  S  C  K  T  S  M  P  V  D  N  *  S  L  Q   : G  Y  Q  R  T  S  C  T  K  S  P  Q  L  Y  S  T  V  W  K  E  *  Q  I  W  T  G  K  S  C  F  N  F  S  A  L  M  A  L  F  S  S  L  H  L  P  P  H  M  H  L  C  K  L  K  I  I  I  V  S  I  I  S  K  M  L  S  T  N  S  T  A  E  :  F  Q  M  C  I  Q  W  T  Y  L  N  I  F  G  P  L  I  G  C  K  G  L  E  F  L  G  I  L  S  *  K  *  K  S  A  L  I  T  L  A   : D  I  G  Q  I  K  E  S  A  G  L  E  I  P  Q  F  K  T  L  M  T  R  L  W  L  L  D  F  C  A  C  M  A  T  L  F  L  L  :  T  Y  S  N  I  L  R  A  K  A  N  F  S  A  S  W  G  N  Q  I  K  Q  *  Q  E  C  I  I  F  I  G  H  L  M  *  C  S  Q  E  R  K  Y  L  K  M  Q  K  Y  S  L  L  I  I  *  E  K  N  E  L  K  I  N  C  *  T  S  G  S  L  L  K  I  Y  L  E  R :   W  D  M  H  *  M  C  H  G  M  L  A  Y  P  A  *  K  Q  G  S  F  *  N  I  M  V  V  K  M  T  C  G  L  A  K  H  C  T   : G  C  H  W  L  T  I  A  Y  T  *  S  *  R  N  R  T  I  T  I  A  K  L  C  T  S  S  S  G  E  E  F  A   : S  G  T  T  N  A  G  *  E  S  L  D  *  V  K  K  G  C  W  L  R  T  I  *  A  V  L  V  Y  L  R  H  K  G  R  P  S  E  W  L  G  S  K  P  Q  L  L  W  T  V  *  G  L  V  L  A  P  H  K  Y  L  Q  L  H  F  F  A  N  S  H  T  T  L  A  P  L  *  I  R   : G  T  T  Q  K  I  G  S  L  G  S  F  L  E  P  *  I  I  S  H  *  V  P  Y  *  H  M  A  E  T  S  I  T  T  C  V  M  L :   G  K  I  G  Y  *  R  *  E  K  E  K  E  K  E  K  E  V  L  N  S  *  F  A  P  *  I  C  A  V  F  I  G  Y  R  R  R  Y  C  C  P  I  Q  L  T  K  S  Y  W  K  L  P  I  E  F  L  T  D  S  V  S  T  R :   D  T  V  K  S  R  *  E  C  *  L  L  V  K  K  *  K  V  T  C  N  S  *  Q  S  S  C  Y  L  I  Q  M  L  P  N  W  M  P  I  S  K  T  L  F  S  L  L  P  K  V  F  T  T  Q  L  I  V  M  I  E  Q  L  T  F  T  *  P  K  C  Y  L  K  E  *  F   </second_frame>
            <third_frame>   V  D  L  S  F  F  F  K  I  *  P  H  C  S  L  S  T  F  S  F  F  F  S  T  K  S  T  F  Q  I  P  *  K :   Q  Q  R  T  C  *  I  Q  S  N  F  A  M  S  C  C  F  *  T  S  Y  K  R :   L  Q  R  G  A  K  W  F  V  A  G  Y  Q  V  G  R  H  R  R  G  S  G  R  G  N  T  H  T  *   : G  V  R  S  I  L  Q  R  G  P  Y  R  C  Y  S  I  D  A  R  I  N  G  R  R  R  N  K  R  L  G  L  *  H  S  M  G  C  H  G  E  R  C  E  G  N  *  N  S  S  V  P  F  K  P  *  V  D  C  E  Q  S  V  G  *  W  F  M  G  *  Q  L  H  F  L  G  L  *  S  C  H  Q  H  I  G  L  C  Y  C  L  E  V  M  E  L  A  S  *  Q  D  S  T  W :   N  V  V  Y  E  R  E  F  E  Q  D  W  *  *  E  C  R  A  H  A  Y  R  L  R  S  G  I  S  F  T  H  *  D  C  *  K  V  R  L  R  F  S  L  *  F  S  R  L  A  R  H  L  C  Q  *  T  T  K  A  Y  K  :  D  T  K  G  H  H  A  Q  S  P  H  N  F  T  P  Q  F  G  R  N  D  R  F  G  L  A  K  V  A  S  I  S  V  H  *  W  L  F  S  L  L  S  I  F  H  R  I  C  T  Y  A  N  S  R  S  *  L  S  Q  L  S  Q  K  C  C  P  Q  I  Q  R  R  S :   S  K  C  V  S  S  G  P  I  *  T  Y  L  D  R  *  S  V  A  K  A  W  N  F  S  V  F  *  A  R  N  K  R  V  H  *  L  R  *  Q  :  I  L  D  K  *  R  N  L  L  G  *  K  F  P  S  S  R  H  *  *  H  G  Y  G  F  *  T  F  A  L  A  W  L  R  C  F  C  * :   R  I  Q  T  F  *  E  Q  R  R  I  F  L  L  R  G  A  I  K  S  S  S  D  R  N  V  *  S  L  *  G  I  S  C  N  V  L  R  R  E  N  T  *  K  C  K  N  I  H  F  *  L  S  K  R  K  T  S  S  K  S  T  A  R  Q  V  D  H  Y  *  R  F  T  W  R   : G  G  I  C  I  R  C  A  M  V  C  *  P  T  P  P  R  N  K  V  L  F  R  T  L  W  W  *  R  *  R  V  D  W  Q  N  I  V  Q  :  D  A  I  G  *  Q  *  P  I  P  R  A  S  E  I  G  L  *  Q  L  P  S  F  A  P  V  R  V  E  K  N  S  Q  :  V  V  L  R  M  R  A  R  R  V  W  I  K  *  K  K  V  V  G  Y  V  L  F  R  Q  C  *  Y  I  *  G  T  K  V  D  R  A  N  G  L  G  Q  N  R  S  S  Y  G  L  C  E  V  L  F  W  L  P  T  S  I  C  S  C  I  S  L  R  I  R  T  L  L  *  H  R  S  E  F  E  :  V  Q  H  R  R  *  A  R  W  G  H  S  W  N  P  K  S  S  L  T  E  C  L  I  N  T  W  Q  R  H  P  S  L  L  A  S  C   : L  G  K  L  A  T  D  G  R  R  R  R  R  R  R  R  R  R  C  *  T  H  N  S  H  L  K  F  V  Q  C  S  L  D  I  G  G  D  I  V  V  P  S  N  L  P  K  A  I  G  N  Y  Q  *  S  F  S  P  T  P  S  L  Q   : G  T  Q  *  K  A  G  R  N  V  D  F  *  *  R  N  R  R  *  H  A  T  A  S  R  A  R  A  I  S  F  R  C  F  R  I  G  C  Q  Y  Q  R  H  F  S  H  C  C  Q  K  F  L  L  L  S  L  L  *  *  S  N  N  *  L  S  H  S  Q  S  A  I  *  K  S  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41056" stop="41155"/>
                    <exon start="41495" stop="41563"/>
                    <exon start="41653" stop="41741"/>
                    <exon start="41856" stop="42159"/>
                    <exon start="42234" stop="42417"/>
                    <exon start="42770" stop="42984"/>
                    <exon start="43063" stop="43183"/>
                    <exon start="43329" stop="43441"/>
                    <exon start="43635" stop="43861"/>
                    <exon start="43946" stop="44061"/>
                    <exon start="44614" stop="44712"/>
                    <exon start="44823" stop="45059"/>
                    <exon start="45129" stop="45240"/>
                    <exon start="45352" stop="45540"/>
                    <exon start="45729" stop="45956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2400</number_coding_nucleotides>
                  <number_encoded_amino_acids>800</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSISASFLRFSLTAHYQPSPSSSPPNQPFKFLKSNREHVEFNRILQCHAVSRRRTKDYKEVQSGSLPVIKWDDIAEEVDVETHTLEVYDPSSNEDHIDAIRSMLGSMGDGEISVSAYDTAWVAMVKDVKGTETPQFPSSLEWIANNQLADGSWGDNSIFLVYDRVINTLACVIALKSWNLHPDKILLGMSFMRENLSRIGDENAEHMPIGFEVAFPSLIEIAKKLGLDFPYDSPVLQDIYASRQLKLTRIPKDIMHKVPTTLLHSLEGMTDLDWQKLLQFQCTDGSFLFSPSSTAYALMQTQDHNCLNYLKNAVHKFNGGVPNVYPVDLFEHIWTVDRLQRLGISRYFELEIKECIDYVSRYWTNKGICWARNSPVQDIDDTAMAFRLLRLHGYAVSADVFKHFESKGEFFCFVGQSNQAVTGMYNLYRASHVMFSGEKILENAKIFTSNYLREKRAQNQLLDKWIITKDLPGEVGYALDVPWYASLPRLETRFFLEHYGGEDDVWIGKTLYRMPLVNNSLYLELAKSDYNNCQALHQFEWRRIRKWYYECGLGEFGLSEKRLLVTYYLGSASIFEAQRSTERMAWVKTAALMDCVRSCFGSPQVSAAAFLCEFAHYSSTALNSRYNTEDRLVGVILGTLNHLSLSALLTHGRDIHHYLRHAWENWLLTVGEGEGEGEGGAELIIRTLNLCSVHWISEEILLSHPTYQKLLEITNRVSHRLRLYKGHSEKQVGMLTFSEEIEGDMQQLAELVLSHSDASELDANIKDTFLTVAKSFYYSAYCDDRTINFHIAKVLFERVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49956" PGL_stop="54744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49956" e_stop="50055"/>
            <exon e_start="50165" e_stop="50239"/>
            <exon e_start="50357" e_stop="50398"/>
            <exon e_start="51228" e_stop="51398"/>
            <exon e_start="52407" e_stop="52493"/>
            <exon e_start="52601" e_stop="52899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49956" e_stop="50055" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50165" e_stop="50239" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50357" e_stop="50398" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51228" e_stop="51398" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52407" e_stop="52493" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="52601" e_stop="52899" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49956" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49979" stop="50055"/>
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              <exon start="52407" stop="52450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49981" stop="50055"/>
              <exon start="50165" stop="50239"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49982" stop="50055"/>
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              <exon start="52601" stop="52867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49983" stop="50055"/>
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              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49983" stop="50055"/>
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              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49988" stop="50055"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49989" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392937" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49989" stop="50055"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49991" stop="50055"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49991" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49993" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49993" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49994" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49995" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49996" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50165" stop="50239"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49999" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50001" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50002" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50011" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50012" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50017" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50018" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50036" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50046" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
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              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50049" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50193" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393968" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51248" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202322" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51294" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51308" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51308" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51355" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51368" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52421" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52455" stop="52493"/>
              <exon start="52601" stop="52860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCCTAGAACAAAGCCTCCATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA : AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC : ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG : GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG : AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG : ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTGTTAATGGTACTGCTGTAGTTGATAGTTTTCAC</gDNA_template>
            <first_frame> K  N  P  R  T  K  P  P  F  L  Q  R  K  E  Q  G  L  *  R  R  V  *  I  Q  S  G  G  A  G  V  F  C  R   : K  N  G  G  Q  G  S  Y  H  *  N  K  E  V  H  D  Q  S  S  T  C  K  E  T  I   : H  Y  R  C  F  A  S  W  K  G  Q  R  F  K   : G  R  V  E  R  E  I  V  K  D  V  R  G  E  R  S  Q  C  N  L  C  V  *  V  Q  D  P  F  W  R  R  Q  I  Y  W  F  W  L  D  L  *  F  C  *  E  R  K  E  I  *  A  K  V  Q  A  D  Q   : E  W  I  R  H  K  G  *  E  I  *  E  A  D  E  G  E  E  E  *  S  Q  E  N  T  R  C  Q  E   : D  *  G  R  R  C  Q  E  E  M  I  C  W  *  *  F  L  *  A  K  C  R  K  R  F  P  C  Y  L  C  F  S  G  N  S  C  R  I  L  S  I  L  V  E  S  L  K  L  Y  L  H  V  Y  V  L  V  L  R  N  L  V  N  L  G  V  Y  R  F  S  Q  H  S  P  Y  F  I  I  T  I  S  S  A  A  T  R  I  I  T  F  V  N  G  T  A  V  V  D  S  F  H </first_frame>
            <second_frame>  K  T  L  E  Q  S  L  H  F  C  R  E  K  S  K  V  S  E  E  E  C  E  F  R  A  E  A  P  E  C  F  A  E  :  K  M  A  D  K  A  V  T  I  R  T  R  K  F  M  T  N  R  L  L  A  R  K  Q  F  :  I  I  D  V  L  H  P  G  R  A  N  V  S  K  :  A  E  L  K  E  K  L  S  R  M  Y  E  V  K  D  P  N  A  I  F  V  F  K  F  R  T  H  F  G  G  G  K  S  T  G  F  G  L  I  Y  D  S  V  E  N  A  K  K  Y  E  P  K  Y  R  L  I  R  :  N  G  L  D  T  K  V  E  K  S  R  K  Q  M  K  E  R  K  N  R  A  K  K  I  R  G  V  K  K  :  T  K  A  G  D  A  K  K  K  *  S  A  G  D  S  S  F  K  P  N  A  E  N  V  F  H  V  I  Y  V  S  L  A  T  H  A  E  S  F  Q  F  W  L  S  H  S  N  Y  I  C  M  F  M  C  *  Y  S  E  T  *  *  I  W  E  C  T  V  F  L  N  I  L  L  I  L  *  S  P  F  Q  V  L  R  Q  G  S  *  L  L  L  M  V  L  L  *  L  I  V  F   </second_frame>
            <third_frame>   K  P  *  N  K  A  S  I  F  A  E  K  R  A  R  S  L  K  K  S  V  N  S  E  R  R  R  R  S  V  L  Q  K :   K  W  R  T  R  Q  L  P  L  E  Q  G  S  S  *  P  I  V  Y  L  Q  G  N  N  S :   L  S  M  F  C  I  L  E  G  P  T  F  Q  R :   P  S  *  K  R  N  C  Q  G  C  T  R  *  K  I  P  M  Q  S  L  C  L  S  S  G  P  I  L  E  E  A  N  L  L  V  L  A  *  S  M  I  L  L  R  T  Q  R  N  M  S  Q  S  T  G  *  S  G :   M  D  *  T  Q  R  L  R  N  L  G  S  R  *  R  R  G  R  I  E  P  R  K  Y  A  V  S  R  R :   L  R  Q  E  M  P  R  R  N  D  L  L  V  I  V  P  L  S  Q  M  Q  K  T  F  S  M  L  F  M  F  L  W  Q  L  M  Q  N  P  F  N  F  G  *  V  T  Q  I  I  F  A  C  L  C  V  S  T  Q  K  L  S  E  F  G  S  V  P  F  F  S  T  F  S  L  F  Y  N  H  H  F  K  C  C  D  K  D  H  N  F  C  *  W  Y  C  C  S  *  *  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49957" stop="50055"/>
                    <exon start="50165" stop="50239"/>
                    <exon start="50357" stop="50398"/>
                    <exon start="51228" stop="51398"/>
                    <exon start="52407" stop="52493"/>
                    <exon start="52601" stop="52630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTLEQSLHFCREKSKVSEEECEFRAEAPECFAEKMADKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLSRMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAKKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52654" stop="52899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKCRKRFPCYLCFSGNSCRILSILVESLKLYLHVYVLVLRNLVNLGVYRFSQHSPYFIITISSAATRIITFVNGTAVVDSFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49981" e_stop="50055"/>
            <exon e_start="50157" e_stop="50239"/>
            <exon e_start="50357" e_stop="50398"/>
            <exon e_start="51228" e_stop="51398"/>
            <exon e_start="52407" e_stop="52493"/>
            <exon e_start="52601" e_stop="52899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="0.879"/>
          <exon-intron don_prob="0.824" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="49981" e_stop="50055" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50056" i_stop="50156" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50157" e_stop="50239" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50357" e_stop="50398" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51228" e_stop="51398" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52407" e_stop="52493" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="52601" e_stop="52899" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49981" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616300" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49990" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49990" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49990" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49997" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49997" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49999" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50001" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50003" stop="50055"/>
              <exon start="50157" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50193" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393968" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51248" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202322" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51294" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51308" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51308" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51355" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51368" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52421" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52455" stop="52493"/>
              <exon start="52601" stop="52860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA : GTTAACAGAAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC : ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG : GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG : AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG : ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTGTTAATGGTACTGCTGTAGTTGATAGTTTTCAC</gDNA_template>
            <first_frame> F  C  R  E  K  S  K  V  S  E  E  E  C  E  F  R  A  E  A  P  E  C  F  A  E  :  V  N  R  K  W  R  T  R  Q  L  P  L  E  Q  G  S  S  *  P  I  V  Y  L  Q  G  N  N  S :   L  S  M  F  C  I  L  E  G  P  T  F  Q  R :   P  S  *  K  R  N  C  Q  G  C  T  R  *  K  I  P  M  Q  S  L  C  L  S  S  G  P  I  L  E  E  A  N  L  L  V  L  A  *  S  M  I  L  L  R  T  Q  R  N  M  S  Q  S  T  G  *  S  G :   M  D  *  T  Q  R  L  R  N  L  G  S  R  *  R  R  G  R  I  E  P  R  K  Y  A  V  S  R  R :   L  R  Q  E  M  P  R  R  N  D  L  L  V  I  V  P  L  S  Q  M  Q  K  T  F  S  M  L  F  M  F  L  W  Q  L  M  Q  N  P  F  N  F  G  *  V  T  Q  I  I  F  A  C  L  C  V  S  T  Q  K  L  S  E  F  G  S  V  P  F  F  S  T  F  S  L  F  Y  N  H  H  F  K  C  C  D  K  D  H  N  F  C  *  W  Y  C  C  S  *  *  F  S  </first_frame>
            <second_frame>  F  A  E  K  R  A  R  S  L  K  K  S  V  N  S  E  R  R  R  R  S  V  L  Q  K :   L  T  E  N  G  G  Q  G  S  Y  H  *  N  K  E  V  H  D  Q  S  S  T  C  K  E  T  I   : H  Y  R  C  F  A  S  W  K  G  Q  R  F  K   : G  R  V  E  R  E  I  V  K  D  V  R  G  E  R  S  Q  C  N  L  C  V  *  V  Q  D  P  F  W  R  R  Q  I  Y  W  F  W  L  D  L  *  F  C  *  E  R  K  E  I  *  A  K  V  Q  A  D  Q   : E  W  I  R  H  K  G  *  E  I  *  E  A  D  E  G  E  E  E  *  S  Q  E  N  T  R  C  Q  E   : D  *  G  R  R  C  Q  E  E  M  I  C  W  *  *  F  L  *  A  K  C  R  K  R  F  P  C  Y  L  C  F  S  G  N  S  C  R  I  L  S  I  L  V  E  S  L  K  L  Y  L  H  V  Y  V  L  V  L  R  N  L  V  N  L  G  V  Y  R  F  S  Q  H  S  P  Y  F  I  I  T  I  S  S  A  A  T  R  I  I  T  F  V  N  G  T  A  V  V  D  S  F  H </second_frame>
            <third_frame>   L  Q  R  K  E  Q  G  L  *  R  R  V  *  I  Q  S  G  G  A  G  V  F  C  R   : S  *  Q  K  M  A  D  K  A  V  T  I  R  T  R  K  F  M  T  N  R  L  L  A  R  K  Q  F  :  I  I  D  V  L  H  P  G  R  A  N  V  S  K  :  A  E  L  K  E  K  L  S  R  M  Y  E  V  K  D  P  N  A  I  F  V  F  K  F  R  T  H  F  G  G  G  K  S  T  G  F  G  L  I  Y  D  S  V  E  N  A  K  K  Y  E  P  K  Y  R  L  I  R  :  N  G  L  D  T  K  V  E  K  S  R  K  Q  M  K  E  R  K  N  R  A  K  K  I  R  G  V  K  K  :  T  K  A  G  D  A  K  K  K  *  S  A  G  D  S  S  F  K  P  N  A  E  N  V  F  H  V  I  Y  V  S  L  A  T  H  A  E  S  F  Q  F  W  L  S  H  S  N  Y  I  C  M  F  M  C  *  Y  S  E  T  *  *  I  W  E  C  T  V  F  L  N  I  L  L  I  L  *  S  P  F  Q  V  L  R  Q  G  S  *  L  L  L  M  V  L  L  *  L  I  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50162" stop="50239"/>
                    <exon start="50357" stop="50398"/>
                    <exon start="51228" stop="51398"/>
                    <exon start="52407" stop="52493"/>
                    <exon start="52601" stop="52630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMADKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLSRMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAKKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52654" stop="52899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKCRKRFPCYLCFSGNSCRILSILVESLKLYLHVYVLVLRNLVNLGVYRFSQHSPYFIITISSAATRIITFVNGTAVVDSFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="49979" e_stop="50055"/>
            <exon e_start="50165" e_stop="50239"/>
            <exon e_start="50357" e_stop="50398"/>
            <exon e_start="51228" e_stop="51398"/>
            <exon e_start="52407" e_stop="52493"/>
            <exon e_start="52601" e_stop="52810"/>
            <exon e_start="54705" e_stop="54744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49979" e_stop="50055" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50056" i_stop="50164" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50165" e_stop="50239" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50357" e_stop="50398" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51228" e_stop="51398" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52407" e_stop="52493" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52601" e_stop="52810" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52811" i_stop="54704" i_length="1894"/>
          </intron>
          <exon e_serial="7" e_score="0.700">
            <gDNA_exon_boundary e_start="54705" e_stop="54744" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49979" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49981" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49989" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49991" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49993" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49995" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49996" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49998" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50002" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50011" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50012" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50017" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50036" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50049" stop="50055"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51326" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52810"/>
              <exon start="54705" stop="54744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51368" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52421" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAA : AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC : ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG : GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG : AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG : ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAAC : ATAAATAAACATAAAAGGAAAATGAAATAAATATAAAACA</gDNA_template>
            <first_frame> I  F  A  E  K  R  A  R  S  L  K  K  S  V  N  S  E  R  R  R  R  S  V  L  Q  K :   K  W  R  T  R  Q  L  P  L  E  Q  G  S  S  *  P  I  V  Y  L  Q  G  N  N  S :   L  S  M  F  C  I  L  E  G  P  T  F  Q  R :   P  S  *  K  R  N  C  Q  G  C  T  R  *  K  I  P  M  Q  S  L  C  L  S  S  G  P  I  L  E  E  A  N  L  L  V  L  A  *  S  M  I  L  L  R  T  Q  R  N  M  S  Q  S  T  G  *  S  G :   M  D  *  T  Q  R  L  R  N  L  G  S  R  *  R  R  G  R  I  E  P  R  K  Y  A  V  S  R  R :   L  R  Q  E  M  P  R  R  N  D  L  L  V  I  V  P  L  S  Q  M  Q  K  T  F  S  M  L  F  M  F  L  W  Q  L  M  Q  N  P  F  N  F  G  *  V  T  Q  I  I  F  A  C  L  C  V  S  T  Q  K  L  S  E  F  G  S  V  P  F  F  S  T :   *  I  N  I  K  G  K  *  N  K  Y  K  T </first_frame>
            <second_frame>  F  L  Q  R  K  E  Q  G  L  *  R  R  V  *  I  Q  S  G  G  A  G  V  F  C  R   : K  N  G  G  Q  G  S  Y  H  *  N  K  E  V  H  D  Q  S  S  T  C  K  E  T  I   : H  Y  R  C  F  A  S  W  K  G  Q  R  F  K   : G  R  V  E  R  E  I  V  K  D  V  R  G  E  R  S  Q  C  N  L  C  V  *  V  Q  D  P  F  W  R  R  Q  I  Y  W  F  W  L  D  L  *  F  C  *  E  R  K  E  I  *  A  K  V  Q  A  D  Q   : E  W  I  R  H  K  G  *  E  I  *  E  A  D  E  G  E  E  E  *  S  Q  E  N  T  R  C  Q  E   : D  *  G  R  R  C  Q  E  E  M  I  C  W  *  *  F  L  *  A  K  C  R  K  R  F  P  C  Y  L  C  F  S  G  N  S  C  R  I  L  S  I  L  V  E  S  L  K  L  Y  L  H  V  Y  V  L  V  L  R  N  L  V  N  L  G  V  Y  R  F  S  Q   : H  K  *  T  *  K  E  N  E  I  N  I  K   </second_frame>
            <third_frame>   F  C  R  E  K  S  K  V  S  E  E  E  C  E  F  R  A  E  A  P  E  C  F  A  E  :  K  M  A  D  K  A  V  T  I  R  T  R  K  F  M  T  N  R  L  L  A  R  K  Q  F  :  I  I  D  V  L  H  P  G  R  A  N  V  S  K  :  A  E  L  K  E  K  L  S  R  M  Y  E  V  K  D  P  N  A  I  F  V  F  K  F  R  T  H  F  G  G  G  K  S  T  G  F  G  L  I  Y  D  S  V  E  N  A  K  K  Y  E  P  K  Y  R  L  I  R  :  N  G  L  D  T  K  V  E  K  S  R  K  Q  M  K  E  R  K  N  R  A  K  K  I  R  G  V  K  K  :  T  K  A  G  D  A  K  K  K  *  S  A  G  D  S  S  F  K  P  N  A  E  N  V  F  H  V  I  Y  V  S  L  A  T  H  A  E  S  F  Q  F  W  L  S  H  S  N  Y  I  C  M  F  M  C  *  Y  S  E  T  *  *  I  W  E  C  T  V  F  L  N  :  I  N  K  H  K  R  K  M  K  *  I  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49981" stop="50055"/>
                    <exon start="50165" stop="50239"/>
                    <exon start="50357" stop="50398"/>
                    <exon start="51228" stop="51398"/>
                    <exon start="52407" stop="52493"/>
                    <exon start="52601" stop="52630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCREKSKVSEEECEFRAEAPECFAEKMADKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLSRMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="49975" e_stop="50063"/>
            <exon e_start="50165" e_stop="50239"/>
            <exon e_start="50357" e_stop="50398"/>
            <exon e_start="51228" e_stop="51398"/>
            <exon e_start="52407" e_stop="52493"/>
            <exon e_start="52601" e_stop="52899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.831"/>
          <exon-intron don_prob="0.824" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.831">
            <gDNA_exon_boundary e_start="49975" e_stop="50063" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50064" i_stop="50164" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50165" e_stop="50239" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.824" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50240" i_stop="50356" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50357" e_stop="50398" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50399" i_stop="51227" i_length="829"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51228" e_stop="51398" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51399" i_stop="52406" i_length="1008"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52407" e_stop="52493" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52494" i_stop="52600" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="52601" e_stop="52899" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49975" stop="50063"/>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50193" stop="50239"/>
              <exon start="50357" stop="50398"/>
              <exon start="51228" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393968" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51248" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202322" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51294" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51308" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51308" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51355" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51356" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51368" stop="51398"/>
              <exon start="52407" stop="52493"/>
              <exon start="52601" stop="52779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52421" stop="52493"/>
              <exon start="52601" stop="52810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52455" stop="52493"/>
              <exon start="52601" stop="52860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCGCCGGAGTGTTTTGCAGAAGTATAACA : AAAATGGCGGACAAGGCAGTTACCATTAGAACAAGGAAGTTCATGACCAATCGTCTACTTGCAAGGAAACAATTC : ATTATCGATGTTTTGCATCCTGGAAGGGCCAACGTTTCAAAG : GCCGAGTTGAAAGAGAAATTGTCAAGGATGTACGAGGTGAAAGATCCCAATGCAATCTTTGTGTTTAAGTTCAGGACCCATTTTGGAGGAGGCAAATCTACTGGTTTTGGCTTGATCTATGATTCTGTTGAGAACGCAAAGAAATATGAGCCAAAGTACAGGCTGATCAGG : AATGGATTAGACACAAAGGTTGAGAAATCTAGGAAGCAGATGAAGGAGAGGAAGAATAGAGCCAAGAAAATACGCGGTGTCAAGAAG : ACTAAGGCAGGAGATGCCAAGAAGAAATGATCTGCTGGTGATAGTTCCTTTAAGCCAAATGCAGAAAACGTTTTCCATGTTATTTATGTTTCTCTGGCAACTCATGCAGAATCCTTTCAATTTTGGTTGAGTCACTCAAATTATATTTGCATGTTTATGTGTTAGTACTCAGAAACTTAGTGAATTTGGGAGTGTACCGTTTTTCTCAACATTCTCCTTATTTTATAATCACCATTTCAAGTGCTGCGACAAGGATCATAACTTTTGTTAATGGTACTGCTGTAGTTGATAGTTTTCAC</gDNA_template>
            <first_frame> L  H  F  C  R  E  K  S  K  V  S  E  E  E  C  E  F  R  A  E  A  P  E  C  F  A  E  V  *  Q :   K  W  R  T  R  Q  L  P  L  E  Q  G  S  S  *  P  I  V  Y  L  Q  G  N  N  S :   L  S  M  F  C  I  L  E  G  P  T  F  Q  R :   P  S  *  K  R  N  C  Q  G  C  T  R  *  K  I  P  M  Q  S  L  C  L  S  S  G  P  I  L  E  E  A  N  L  L  V  L  A  *  S  M  I  L  L  R  T  Q  R  N  M  S  Q  S  T  G  *  S  G :   M  D  *  T  Q  R  L  R  N  L  G  S  R  *  R  R  G  R  I  E  P  R  K  Y  A  V  S  R  R :   L  R  Q  E  M  P  R  R  N  D  L  L  V  I  V  P  L  S  Q  M  Q  K  T  F  S  M  L  F  M  F  L  W  Q  L  M  Q  N  P  F  N  F  G  *  V  T  Q  I  I  F  A  C  L  C  V  S  T  Q  K  L  S  E  F  G  S  V  P  F  F  S  T  F  S  L  F  Y  N  H  H  F  K  C  C  D  K  D  H  N  F  C  *  W  Y  C  C  S  *  *  F  S  </first_frame>
            <second_frame>  S  I  F  A  E  K  R  A  R  S  L  K  K  S  V  N  S  E  R  R  R  R  S  V  L  Q  K  Y  N   : K  N  G  G  Q  G  S  Y  H  *  N  K  E  V  H  D  Q  S  S  T  C  K  E  T  I   : H  Y  R  C  F  A  S  W  K  G  Q  R  F  K   : G  R  V  E  R  E  I  V  K  D  V  R  G  E  R  S  Q  C  N  L  C  V  *  V  Q  D  P  F  W  R  R  Q  I  Y  W  F  W  L  D  L  *  F  C  *  E  R  K  E  I  *  A  K  V  Q  A  D  Q   : E  W  I  R  H  K  G  *  E  I  *  E  A  D  E  G  E  E  E  *  S  Q  E  N  T  R  C  Q  E   : D  *  G  R  R  C  Q  E  E  M  I  C  W  *  *  F  L  *  A  K  C  R  K  R  F  P  C  Y  L  C  F  S  G  N  S  C  R  I  L  S  I  L  V  E  S  L  K  L  Y  L  H  V  Y  V  L  V  L  R  N  L  V  N  L  G  V  Y  R  F  S  Q  H  S  P  Y  F  I  I  T  I  S  S  A  A  T  R  I  I  T  F  V  N  G  T  A  V  V  D  S  F  H </second_frame>
            <third_frame>   P  F  L  Q  R  K  E  Q  G  L  *  R  R  V  *  I  Q  S  G  G  A  G  V  F  C  R  S  I  T  :  K  M  A  D  K  A  V  T  I  R  T  R  K  F  M  T  N  R  L  L  A  R  K  Q  F  :  I  I  D  V  L  H  P  G  R  A  N  V  S  K  :  A  E  L  K  E  K  L  S  R  M  Y  E  V  K  D  P  N  A  I  F  V  F  K  F  R  T  H  F  G  G  G  K  S  T  G  F  G  L  I  Y  D  S  V  E  N  A  K  K  Y  E  P  K  Y  R  L  I  R  :  N  G  L  D  T  K  V  E  K  S  R  K  Q  M  K  E  R  K  N  R  A  K  K  I  R  G  V  K  K  :  T  K  A  G  D  A  K  K  K  *  S  A  G  D  S  S  F  K  P  N  A  E  N  V  F  H  V  I  Y  V  S  L  A  T  H  A  E  S  F  Q  F  W  L  S  H  S  N  Y  I  C  M  F  M  C  *  Y  S  E  T  *  *  I  W  E  C  T  V  F  L  N  I  L  L  I  L  *  S  P  F  Q  V  L  R  Q  G  S  *  L  L  L  M  V  L  L  *  L  I  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50022" stop="50063"/>
                    <exon start="50165" stop="50239"/>
                    <exon start="50357" stop="50398"/>
                    <exon start="51228" stop="51398"/>
                    <exon start="52407" stop="52493"/>
                    <exon start="52601" stop="52630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQSGGAGVFCRSITKMADKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLSRMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAKKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52654" stop="52899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKCRKRFPCYLCFSGNSCRILSILVESLKLYLHVYVLVLRNLVNLGVYRFSQHSPYFIITISSAATRIITFVNGTAVVDSFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54582" PGL_stop="53631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54582" e_stop="53631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="54582" e_stop="53631" e_length="952"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54582" stop="54078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54582" stop="54277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54388" stop="53648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54136" stop="53631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGATTCCCACTACAGTTGAGTCCTATAACTCTCTCTCTCTCTGCGCACAACTATTTCGGTTCGGGTTTAATTCTTTCACCATGAAGGTTCATCCAGTAACAAGTAACGTTTTGTCTCCGGCTAACGGCTCAGTTTGCCGGAAAAAGAAGCTCCGGAGACTACCTCATATTTTTGCCAAGGTTCTAGAACTTCCTTTTCATTCCGATTCTGATGTTTCAATCCACGAAACTTCTGATTCGTTGCGATTTGTCATCCCAACAGATGATGTCGGCGATAATATTAGAGCTCACATAGTTGAGATCTATCCGGGTGTTACTAAGATTGTTATCCGAGCTGATAACGTTTTTGATTCTTCATTGGACCTCGACTTGTGGCGATTTCGGCTTCCGGCCACAACTCTGCCGGAACTGGCTAGTGCCCGTTTTAGTGACGGTGAATTGGTGGTCACGGTGCCCAAAGGGGAGGAGGAAGACGACGGCGATATCGTCCGAGCAGGTGGTTTTGTTCTCGTACAATAATCCTCTTTTGTCTCACTCGATTGTTTTTCCAAGTTTTAGTTTTTTTTTAGTTAATTGTGGCTGGTCCTGCCAATGGGATATAATTTGAATGTTTGAATTGAATGTTAGTTTCTCTTTAGATGTATATATGATCATACATAGTTTTCAATTTATGTGTTAATGTTAGTAGGCACTTTATTTTGACTTGTTGCAATTAGAAAGCAGGTTTCCAAGAAAATTTTACAACCAACAACAAATTAATGACTCTTGTTGCTTTTCAAGTAACTAACTAGTTGGCCACCCCAGAAGAAGCTTTTTGTAAAACCTTGTCTTTTAATTTATTGAGTTTATAGTTCCTCATTCTTAGTCTCTTTAGGCTGTACAATAGCTGGATTGTGTTTCCCGTTCATACATTATTGAAATAAAAAGGATACCCAGCAGCATATTTTACCA</gDNA_template>
            <first_frame> Q  D  S  H  Y  S  *  V  L  *  L  S  L  S  L  R  T  T  I  S  V  R  V  *  F  F  H  H  E  G  S  S  S  N  K  *  R  F  V  S  G  *  R  L  S  L  P  E  K  E  A  P  E  T  T  S  Y  F  C  Q  G  S  R  T  S  F  S  F  R  F  *  C  F  N  P  R  N  F  *  F  V  A  I  C  H  P  N  R  *  C  R  R  *  Y  *  S  S  H  S  *  D  L  S  G  C  Y  *  D  C  Y  P  S  *  *  R  F  *  F  F  I  G  P  R  L  V  A  I  S  A  S  G  H  N  S  A  G  T  G  *  C  P  F  *  *  R  *  I  G  G  H  G  A  Q  R  G  G  G  R  R  R  R  Y  R  P  S  R  W  F  C  S  R  T  I  I  L  F  C  L  T  R  L  F  F  Q  V  L  V  F  F  *  L  I  V  A  G  P  A  N  G  I  *  F  E  C  L  N  *  M  L  V  S  L  *  M  Y  I  *  S  Y  I  V  F  N  L  C  V  N  V  S  R  H  F  I  L  T  C  C  N  *  K  A  G  F  Q  E  N  F  T  T  N  N  K  L  M  T  L  V  A  F  Q  V  T  N  *  L  A  T  P  E  E  A  F  C  K  T  L  S  F  N  L  L  S  L  *  F  L  I  L  S  L  F  R  L  Y  N  S  W  I  V  F  P  V  H  T  L  L  K  *  K  G  Y  P  A  A  Y  F  T  </first_frame>
            <second_frame>  R  I  P  T  T  V  E  S  Y  N  S  L  S  L  C  A  Q  L  F  R  F  G  F  N  S  F  T  M  K  V  H  P  V  T  S  N  V  L  S  P  A  N  G  S  V  C  R  K  K  K  L  R  R  L  P  H  I  F  A  K  V  L  E  L  P  F  H  S  D  S  D  V  S  I  H  E  T  S  D  S  L  R  F  V  I  P  T  D  D  V  G  D  N  I  R  A  H  I  V  E  I  Y  P  G  V  T  K  I  V  I  R  A  D  N  V  F  D  S  S  L  D  L  D  L  W  R  F  R  L  P  A  T  T  L  P  E  L  A  S  A  R  F  S  D  G  E  L  V  V  T  V  P  K  G  E  E  E  D  D  G  D  I  V  R  A  G  G  F  V  L  V  Q  *  S  S  F  V  S  L  D  C  F  S  K  F  *  F  F  F  S  *  L  W  L  V  L  P  M  G  Y  N  L  N  V  *  I  E  C  *  F  L  F  R  C  I  Y  D  H  T  *  F  S  I  Y  V  L  M  L  V  G  T  L  F  *  L  V  A  I  R  K  Q  V  S  K  K  I  L  Q  P  T  T  N  *  *  L  L  L  L  F  K  *  L  T  S  W  P  P  Q  K  K  L  F  V  K  P  C  L  L  I  Y  *  V  Y  S  S  S  F  L  V  S  L  G  C  T  I  A  G  L  C  F  P  F  I  H  Y  *  N  K  K  D  T  Q  Q  H  I  L  P </second_frame>
            <third_frame>   G  F  P  L  Q  L  S  P  I  T  L  S  L  S  A  H  N  Y  F  G  S  G  L  I  L  S  P  *  R  F  I  Q  *  Q  V  T  F  C  L  R  L  T  A  Q  F  A  G  K  R  S  S  G  D  Y  L  I  F  L  P  R  F  *  N  F  L  F  I  P  I  L  M  F  Q  S  T  K  L  L  I  R  C  D  L  S  S  Q  Q  M  M  S  A  I  I  L  E  L  T  *  L  R  S  I  R  V  L  L  R  L  L  S  E  L  I  T  F  L  I  L  H  W  T  S  T  C  G  D  F  G  F  R  P  Q  L  C  R  N  W  L  V  P  V  L  V  T  V  N  W  W  S  R  C  P  K  G  R  R  K  T  T  A  I  S  S  E  Q  V  V  L  F  S  Y  N  N  P  L  L  S  H  S  I  V  F  P  S  F  S  F  F  L  V  N  C  G  W  S  C  Q  W  D  I  I  *  M  F  E  L  N  V  S  F  S  L  D  V  Y  M  I  I  H  S  F  Q  F  M  C  *  C  *  *  A  L  Y  F  D  L  L  Q  L  E  S  R  F  P  R  K  F  Y  N  Q  Q  Q  I  N  D  S  C  C  F  S  S  N  *  L  V  G  H  P  R  R  S  F  L  *  N  L  V  F  *  F  I  E  F  I  V  P  H  S  *  S  L  *  A  V  Q  *  L  D  C  V  S  R  S  Y  I  I  E  I  K  R  I  P  S  S  I  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54581" stop="54063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPTTVESYNSLSLCAQLFRFGFNSFTMKVHPVTSNVLSPANGSVCRKKKLRRLPHIFAKVLELPFHSDSDVSIHETSDSLRFVIPTDDVGDNIRAHIVEIYPGVTKIVIRADNVFDSSLDLDLWRFRLPATTLPELASARFSDGELVVTVPKGEEEDDGDIVRAGGFVLVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="67582" PGL_stop="56129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67582" e_stop="67514"/>
            <exon e_start="67179" e_stop="67052"/>
            <exon e_start="66741" e_stop="66622"/>
            <exon e_start="65428" e_stop="65348"/>
            <exon e_start="64584" e_stop="64507"/>
            <exon e_start="64397" e_stop="64305"/>
            <exon e_start="63596" e_stop="63542"/>
            <exon e_start="62989" e_stop="62913"/>
            <exon e_start="62108" e_stop="62037"/>
            <exon e_start="61909" e_stop="61826"/>
            <exon e_start="61652" e_stop="61533"/>
            <exon e_start="61436" e_stop="61368"/>
            <exon e_start="60827" e_stop="60750"/>
            <exon e_start="60582" e_stop="60444"/>
            <exon e_start="59819" e_stop="59655"/>
            <exon e_start="57839" e_stop="57694"/>
            <exon e_start="57546" e_stop="57367"/>
            <exon e_start="56903" e_stop="56815"/>
            <exon e_start="56673" e_stop="56642"/>
            <exon e_start="56483" e_stop="56129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.489" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.519" acc_prob="0.598" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.948" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="67582" e_stop="67514" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67513" i_stop="67180" i_length="334"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="67179" e_stop="67052" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.489" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67051" i_stop="66742" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66741" e_stop="66622" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66621" i_stop="65429" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65428" e_stop="65348" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="65347" i_stop="64585" i_length="763"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64584" e_stop="64507" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64506" i_stop="64398" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64397" e_stop="64305" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64304" i_stop="63597" i_length="708"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63596" e_stop="63542" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.679" acc_prob="0.940">
            <gDNA_intron_boundary i_start="63541" i_stop="62990" i_length="552"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62989" e_stop="62913" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="62912" i_stop="62109" i_length="804"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62108" e_stop="62037" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.977">
            <gDNA_intron_boundary i_start="62036" i_stop="61910" i_length="127"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61909" e_stop="61826" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.519" acc_prob="0.598">
            <gDNA_intron_boundary i_start="61825" i_stop="61653" i_length="173"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61652" e_stop="61533" e_length="120"/>
          </exon>
          <intron i_serial="11" don_prob="0.988" acc_prob="0.876">
            <gDNA_intron_boundary i_start="61532" i_stop="61437" i_length="96"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61436" e_stop="61368" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61367" i_stop="60828" i_length="540"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="60827" e_stop="60750" e_length="78"/>
          </exon>
          <intron i_serial="13" don_prob="0.992" acc_prob="0.799">
            <gDNA_intron_boundary i_start="60749" i_stop="60583" i_length="167"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="60582" e_stop="60444" e_length="139"/>
          </exon>
          <intron i_serial="14" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60443" i_stop="59820" i_length="624"/>
          </intron>
          <exon e_serial="15" e_score="0.994">
            <gDNA_exon_boundary e_start="59819" e_stop="59655" e_length="165"/>
          </exon>
          <intron i_serial="15" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59654" i_stop="57840" i_length="1815"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="57839" e_stop="57694" e_length="146"/>
          </exon>
          <intron i_serial="16" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57693" i_stop="57547" i_length="147"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="57546" e_stop="57367" e_length="180"/>
          </exon>
          <intron i_serial="17" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="57366" i_stop="56904" i_length="463"/>
          </intron>
          <exon e_serial="18" e_score="0.977">
            <gDNA_exon_boundary e_start="56903" e_stop="56815" e_length="89"/>
          </exon>
          <intron i_serial="18" don_prob="0.985" acc_prob="0.948">
            <gDNA_intron_boundary i_start="56814" i_stop="56674" i_length="141"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="56673" e_stop="56642" e_length="32"/>
          </exon>
          <intron i_serial="19" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56641" i_stop="56484" i_length="158"/>
          </intron>
          <exon e_serial="20" e_score="0.955">
            <gDNA_exon_boundary e_start="56483" e_stop="56129" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67582" stop="67514"/>
              <exon start="67179" stop="67052"/>
              <exon start="66741" stop="66622"/>
              <exon start="65428" stop="65348"/>
              <exon start="64584" stop="64507"/>
              <exon start="64397" stop="64305"/>
              <exon start="63596" stop="63542"/>
              <exon start="62989" stop="62963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67088" stop="67052"/>
              <exon start="66741" stop="66622"/>
              <exon start="65428" stop="65348"/>
              <exon start="64584" stop="64507"/>
              <exon start="64397" stop="64305"/>
              <exon start="63596" stop="63542"/>
              <exon start="62989" stop="62913"/>
              <exon start="62108" stop="62037"/>
              <exon start="61909" stop="61844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67078" stop="67052"/>
              <exon start="66741" stop="66622"/>
              <exon start="65428" stop="65348"/>
              <exon start="64584" stop="64507"/>
              <exon start="64397" stop="64305"/>
              <exon start="63596" stop="63542"/>
              <exon start="62989" stop="62915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65428" stop="65348"/>
              <exon start="64584" stop="64507"/>
              <exon start="64397" stop="64305"/>
              <exon start="63596" stop="63542"/>
              <exon start="62989" stop="62913"/>
              <exon start="62108" stop="62037"/>
              <exon start="61909" stop="61873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62066" stop="62037"/>
              <exon start="61909" stop="61826"/>
              <exon start="61652" stop="61533"/>
              <exon start="61436" stop="61368"/>
              <exon start="60827" stop="60750"/>
              <exon start="60582" stop="60444"/>
              <exon start="59819" stop="59655"/>
              <exon start="57839" stop="57783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61890" stop="61826"/>
              <exon start="61652" stop="61533"/>
              <exon start="61436" stop="61368"/>
              <exon start="60827" stop="60750"/>
              <exon start="60582" stop="60444"/>
              <exon start="59819" stop="59741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61612" stop="61533"/>
              <exon start="61436" stop="61368"/>
              <exon start="60827" stop="60750"/>
              <exon start="60582" stop="60444"/>
              <exon start="59819" stop="59729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59731" stop="59655"/>
              <exon start="57839" stop="57694"/>
              <exon start="57546" stop="57367"/>
              <exon start="56903" stop="56817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57465" stop="57367"/>
              <exon start="56903" stop="56815"/>
              <exon start="56673" stop="56642"/>
              <exon start="56483" stop="56457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597707" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56868" stop="56815"/>
              <exon start="56673" stop="56642"/>
              <exon start="56483" stop="56129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422998" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGGCTATATAAATCCTTTCGTGAAGTTCATTGATCAGGGAAGACGATTCATCTGTAACTTGTGTG : GACATACTGATGAAACTCCACGTGACTATCAGTGCAACTTAGGTCCAGATGGCAGGCGTAGGGATGCTGATGAAAGGCCTGAACTATGCCGAGGAACCGTTGAGTTTGTCGCTACCAAGGAGTATATG : GTGCGAGATCCAATGCCTGCTGTGTATTTCTTCCTGATAGACGTTTCCATGAATGCCATACAGACTGGTGCAACTGCAGCTGCTTGCAGTGCAATCAGCCAAGTTATTTCTGATCTCCCT : GACGGTCCTCGGACATTGGTCGGAGTTGCTACATTTGACTCAACTATCCACTTCTACAATCTCAAGCGTGCATTGCAGCAG : CCATTGATGCTTATAGTCCCTGATGTCCAAGATGTTTACACCCCCCTACAGACTGATGTTATCGTGCAGCTCTCGGAG : TGCCGTCAACACCTAGAGCTTCTTCTAGAAAGCATCCCAACAATGTTCCAGAACAACAGGATTGCTGATTCAGCTTTTGGAGCTGCAGTCAAG : GCTGCTTTCTTGGCAATGAAAAGCACTGGAGGCAAACTTCTTGTGTTTCAATCAG : TCCTGCCATCTACTGGTATTGGGGCCCTTTCTGCAAGAGAGGCTGAAGGAAGAACCAATGTATCAGCTGCAGAAAAG : GAGGCCAACAAGTTGCTCCAGCCGGCTGACAAAACTCTGAAGACAATGGCTATTGAGTTTGCGGAGTATCAG : GTCTGTGTTGACGTGTTTCTCACAACACAATCTTATGTAGACATTGCCTCCATCTCGGTCATTCCTAGGACGACTGGTGGGCAG : GTGTACTACTATTTCCCTTTCTCTGCTCTTGCTGATACTGCCAAGCTATACAATGATCTTCGATGGAATATCACTAGGCCCCAAGGGTTTGAGGCAGTAATGCGTGTAAGATGTAGTCAG : GGCCTTCAAGTTCAAGAGTATTCTGGAAATTACTGTAAAAGAATTCCTACAGATGTTGATCTACCTGCG : ATTGACTGTGACAAAACAATTATGGTTACATTGAAACATGATGACAAATTGCAGGATGGTTCAGAATGTTCTTTTCAG : TCTGCTGTTCTTTACACTACCATTGATGGCCAAAGAAGAATCCGAGTGTCAACTTTGGCTCTGCCTTGCACAACTATGTTGAGTAATCTATTTCGATCAGCTGACTTGGACACCCAGTTTGCTTGCATCTTAAAGCAAG : CTGCCAGTGAAGTACCAACTGCTCCTCTCTCACGGATAAGAGAACAAGTGACAAACCTTTGCATCAATATTCTGCACTCTTACCGTAAATTCTGTGCGACAGTGTCATCCTCAGGGCAACTTATCCTTCCTGAGGCACTTAAACTTCTTCCTCTTTACACATTGG : CTTTGGTTAAAAGCACTGGACTTAGAGCAGATGGACAGATCGATAGTAGGTCCTTCTGGATAAATTATGTTTCCCCACTCTCTACTCCATTGGCAATCCCTCTGGTCTACCCTAGATTGATAGCAATTCATGAATTTGATACTAAG : GAGAATGATGATTCTCTTATTCCCCCTTCTATTCCACTTTCCAGTGAACACATTACTGACAATGGTATCTATCTTCTCGAGAACGGTGAGGACTGTTTGATATATGTTGGGAACTCTGCAGATCCTAATGTTATCCGTCAGCTGCTAGGCATTTCATCTGTCGAGGAAATTCCTGCTCAG : TTTGTCCTGCAGCAGTATGACAATCCACTCTCTAAGAAGCTCAACGACATCATTAATGATATTAGACGCCAAAGGTGTAACTATCTCCG : CTTAAAATTATGCAAAAAGGGAGATTCATCAG : GCATGTTATTTCTCTCGCACATGGTAGAAGACAAGACACAAAATGGGCTTTCATATGTCGAGTTTCTAGTACATATCCATCGACATATTCAAAATAAAATGGCTTGAGAAAATATCCAGTTTTGTTCATGAATTTTGATTATAGAGAAGGGGGGGGGGGGGTACAGATGTTTTCAGTATGAAGAGATGCAGATGAGCTTTCCAGGTGTGGCCCCATCCATGGCTTCAGAGCTATCTTAGTTTTTTTGAGGTGCAGCGCATACTCAAAATGAACGGACAAAAAGTAATGTTTTTATGTATTTTCACAGTGATAGTGTTATTTATTATGATTATTTTTCTTGACGTGAAAATGTAGA</gDNA_template>
            <first_frame> A  K  A  I  *  I  L  S  *  S  S  L  I  R  E  D  D  S  S  V  T  C  V  :  D  I  L  M  K  L  H  V  T  I  S  A  T  *  V  Q  M  A  G  V  G  M  L  M  K  G  L  N  Y  A  E  E  P  L  S  L  S  L  P  R  S  I  W :   C  E  I  Q  C  L  L  C  I  S  S  *  *  T  F  P  *  M  P  Y  R  L  V  Q  L  Q  L  L  A  V  Q  S  A  K  L  F  L  I  S  L :   T  V  L  G  H  W  S  E  L  L  H  L  T  Q  L  S  T  S  T  I  S  S  V  H  C  S  S :   H  *  C  L  *  S  L  M  S  K  M  F  T  P  P  Y  R  L  M  L  S  C  S  S  R  S :   A  V  N  T  *  S  F  F  *  K  A  S  Q  Q  C  S  R  T  T  G  L  L  I  Q  L  L  E  L  Q  S  R :   L  L  S  W  Q  *  K  A  L  E  A  N  F  L  C  F  N  Q  :  S  C  H  L  L  V  L  G  P  F  L  Q  E  R  L  K  E  E  P  M  Y  Q  L  Q  K  R :   R  P  T  S  C  S  S  R  L  T  K  L  *  R  Q  W  L  L  S  L  R  S  I  R :   S  V  L  T  C  F  S  Q  H  N  L  M  *  T  L  P  P  S  R  S  F  L  G  R  L  V  G  R :   C  T  T  I  S  L  S  L  L  L  L  I  L  P  S  Y  T  M  I  F  D  G  I  S  L  G  P  K  G  L  R  Q  *  C  V  *  D  V  V  R :   A  F  K  F  K  S  I  L  E  I  T  V  K  E  F  L  Q  M  L  I  Y  L  R :   L  T  V  T  K  Q  L  W  L  H  *  N  M  M  T  N  C  R  M  V  Q  N  V  L  F  S :   L  L  F  F  T  L  P  L  M  A  K  E  E  S  E  C  Q  L  W  L  C  L  A  Q  L  C  *  V  I  Y  F  D  Q  L  T  W  T  P  S  L  L  A  S  *  S  K  :  L  P  V  K  Y  Q  L  L  L  S  H  G  *  E  N  K  *  Q  T  F  A  S  I  F  C  T  L  T  V  N  S  V  R  Q  C  H  P  Q  G  N  L  S  F  L  R  H  L  N  F  F  L  F  T  H  W  :  L  W  L  K  A  L  D  L  E  Q  M  D  R  S  I  V  G  P  S  G  *  I  M  F  P  H  S  L  L  H  W  Q  S  L  W  S  T  L  D  *  *  Q  F  M  N  L  I  L  R :   R  M  M  I  L  L  F  P  L  L  F  H  F  P  V  N  T  L  L  T  M  V  S  I  F  S  R  T  V  R  T  V  *  Y  M  L  G  T  L  Q  I  L  M  L  S  V  S  C  *  A  F  H  L  S  R  K  F  L  L  S :   L  S  C  S  S  M  T  I  H  S  L  R  S  S  T  T  S  L  M  I  L  D  A  K  G  V  T  I  S   : A  *  N  Y  A  K  R  E  I  H  Q  :  A  C  Y  F  S  R  T  W  *  K  T  R  H  K  M  G  F  H  M  S  S  F  *  Y  I  S  I  D  I  F  K  I  K  W  L  E  K  I  S  S  F  V  H  E  F  *  L  *  R  R  G  G  G  G  T  D  V  F  S  M  K  R  C  R  *  A  F  Q  V  W  P  H  P  W  L  Q  S  Y  L  S  F  F  E  V  Q  R  I  L  K  M  N  G  Q  K  V  M  F  L  C  I  F  T  V  I  V  L  F  I  M  I  I  F  L  D  V  K  M  *  </first_frame>
            <second_frame>  Q  R  L  Y  K  S  F  R  E  V  H  *  S  G  K  T  I  H  L  *  L  V  W :   T  Y  *  *  N  S  T  *  L  S  V  Q  L  R  S  R  W  Q  A  *  G  C  *  *  K  A  *  T  M  P  R  N  R  *  V  C  R  Y  Q  G  V  Y   : G  A  R  S  N  A  C  C  V  F  L  P  D  R  R  F  H  E  C  H  T  D  W  C  N  C  S  C  L  Q  C  N  Q  P  S  Y  F  *  S  P   : *  R  S  S  D  I  G  R  S  C  Y  I  *  L  N  Y  P  L  L  Q  S  Q  A  C  I  A  A   : A  I  D  A  Y  S  P  *  C  P  R  C  L  H  P  P  T  D  *  C  Y  R  A  A  L  G   : V  P  S  T  P  R  A  S  S  R  K  H  P  N  N  V  P  E  Q  Q  D  C  *  F  S  F  W  S  C  S  Q   : G  C  F  L  G  N  E  K  H  W  R  Q  T  S  C  V  S  I  S :   P  A  I  Y  W  Y  W  G  P  F  C  K  R  G  *  R  K  N  Q  C  I  S  C  R  K   : G  G  Q  Q  V  A  P  A  G  *  Q  N  S  E  D  N  G  Y  *  V  C  G  V  S   : G  L  C  *  R  V  S  H  N  T  I  L  C  R  H  C  L  H  L  G  H  S  *  D  D  W  W  A   : G  V  L  L  F  P  F  L  C  S  C  *  Y  C  Q  A  I  Q  *  S  S  M  E  Y  H  *  A  P  R  V  *  G  S  N  A  C  K  M  *  S   : G  P  S  S  S  R  V  F  W  K  L  L  *  K  N  S  Y  R  C  *  S  T  C   : D  *  L  *  Q  N  N  Y  G  Y  I  E  T  *  *  Q  I  A  G  W  F  R  M  F  F  S   : V  C  C  S  L  H  Y  H  *  W  P  K  K  N  P  S  V  N  F  G  S  A  L  H  N  Y  V  E  *  S  I  S  I  S  *  L  G  H  P  V  C  L  H  L  K  A  S :   C  Q  *  S  T  N  C  S  S  L  T  D  K  R  T  S  D  K  P  L  H  Q  Y  S  A  L  L  P  *  I  L  C  D  S  V  I  L  R  A  T  Y  P  S  *  G  T  *  T  S  S  S  L  H  I  G :   F  G  *  K  H  W  T  *  S  R  W  T  D  R  *  *  V  L  L  D  K  L  C  F  P  T  L  Y  S  I  G  N  P  S  G  L  P  *  I  D  S  N  S  *  I  *  Y  *   : G  E  *  *  F  S  Y  S  P  F  Y  S  T  F  Q  *  T  H  Y  *  Q  W  Y  L  S  S  R  E  R  *  G  L  F  D  I  C  W  E  L  C  R  S  *  C  Y  P  S  A  A  R  H  F  I  C  R  G  N  S  C  S   : V  C  P  A  A  V  *  Q  S  T  L  *  E  A  Q  R  H  H  *  *  Y  *  T  P  K  V  *  L  S  P  :  L  K  I  M  Q  K  G  R  F  I  R :   H  V  I  S  L  A  H  G  R  R  Q  D  T  K  W  A  F  I  C  R  V  S  S  T  Y  P  S  T  Y  S  K  *  N  G  L  R  K  Y  P  V  L  F  M  N  F  D  Y  R  E  G  G  G  G  V  Q  M  F  S  V  *  R  D  A  D  E  L  S  R  C  G  P  I  H  G  F  R  A  I  L  V  F  L  R  C  S  A  Y  S  K  *  T  D  K  K  *  C  F  Y  V  F  S  Q  *  *  C  Y  L  L  *  L  F  F  L  T  *  K  C  R </second_frame>
            <third_frame>   K  G  Y  I  N  P  F  V  K  F  I  D  Q  G  R  R  F  I  C  N  L  C   : G  H  T  D  E  T  P  R  D  Y  Q  C  N  L  G  P  D  G  R  R  R  D  A  D  E  R  P  E  L  C  R  G  T  V  E  F  V  A  T  K  E  Y  M  :  V  R  D  P  M  P  A  V  Y  F  F  L  I  D  V  S  M  N  A  I  Q  T  G  A  T  A  A  A  C  S  A  I  S  Q  V  I  S  D  L  P  :  D  G  P  R  T  L  V  G  V  A  T  F  D  S  T  I  H  F  Y  N  L  K  R  A  L  Q  Q  :  P  L  M  L  I  V  P  D  V  Q  D  V  Y  T  P  L  Q  T  D  V  I  V  Q  L  S  E  :  C  R  Q  H  L  E  L  L  L  E  S  I  P  T  M  F  Q  N  N  R  I  A  D  S  A  F  G  A  A  V  K  :  A  A  F  L  A  M  K  S  T  G  G  K  L  L  V  F  Q  S   : V  L  P  S  T  G  I  G  A  L  S  A  R  E  A  E  G  R  T  N  V  S  A  A  E  K  :  E  A  N  K  L  L  Q  P  A  D  K  T  L  K  T  M  A  I  E  F  A  E  Y  Q  :  V  C  V  D  V  F  L  T  T  Q  S  Y  V  D  I  A  S  I  S  V  I  P  R  T  T  G  G  Q  :  V  Y  Y  Y  F  P  F  S  A  L  A  D  T  A  K  L  Y  N  D  L  R  W  N  I  T  R  P  Q  G  F  E  A  V  M  R  V  R  C  S  Q  :  G  L  Q  V  Q  E  Y  S  G  N  Y  C  K  R  I  P  T  D  V  D  L  P  A  :  I  D  C  D  K  T  I  M  V  T  L  K  H  D  D  K  L  Q  D  G  S  E  C  S  F  Q  :  S  A  V  L  Y  T  T  I  D  G  Q  R  R  I  R  V  S  T  L  A  L  P  C  T  T  M  L  S  N  L  F  R  S  A  D  L  D  T  Q  F  A  C  I  L  K  Q   : A  A  S  E  V  P  T  A  P  L  S  R  I  R  E  Q  V  T  N  L  C  I  N  I  L  H  S  Y  R  K  F  C  A  T  V  S  S  S  G  Q  L  I  L  P  E  A  L  K  L  L  P  L  Y  T  L   : A  L  V  K  S  T  G  L  R  A  D  G  Q  I  D  S  R  S  F  W  I  N  Y  V  S  P  L  S  T  P  L  A  I  P  L  V  Y  P  R  L  I  A  I  H  E  F  D  T  K  :  E  N  D  D  S  L  I  P  P  S  I  P  L  S  S  E  H  I  T  D  N  G  I  Y  L  L  E  N  G  E  D  C  L  I  Y  V  G  N  S  A  D  P  N  V  I  R  Q  L  L  G  I  S  S  V  E  E  I  P  A  Q  :  F  V  L  Q  Q  Y  D  N  P  L  S  K  K  L  N  D  I  I  N  D  I  R  R  Q  R  C  N  Y  L  R :   L  K  L  C  K  K  G  D  S  S   : G  M  L  F  L  S  H  M  V  E  D  K  T  Q  N  G  L  S  Y  V  E  F  L  V  H  I  H  R  H  I  Q  N  K  M  A  *  E  N  I  Q  F  C  S  *  I  L  I  I  E  K  G  G  G  G  Y  R  C  F  Q  Y  E  E  M  Q  M  S  F  P  G  V  A  P  S  M  A  S  E  L  S  *  F  F  *  G  A  A  H  T  Q  N  E  R  T  K  S  N  V  F  M  Y  F  H  S  D  S  V  I  Y  Y  D  Y  F  S  *  R  E  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67580" stop="67514"/>
                    <exon start="67179" stop="67052"/>
                    <exon start="66741" stop="66622"/>
                    <exon start="65428" stop="65348"/>
                    <exon start="64584" stop="64507"/>
                    <exon start="64397" stop="64305"/>
                    <exon start="63596" stop="63542"/>
                    <exon start="62989" stop="62913"/>
                    <exon start="62108" stop="62037"/>
                    <exon start="61909" stop="61826"/>
                    <exon start="61652" stop="61533"/>
                    <exon start="61436" stop="61368"/>
                    <exon start="60827" stop="60750"/>
                    <exon start="60582" stop="60444"/>
                    <exon start="59819" stop="59655"/>
                    <exon start="57839" stop="57694"/>
                    <exon start="57546" stop="57367"/>
                    <exon start="56903" stop="56815"/>
                    <exon start="56673" stop="56642"/>
                    <exon start="56483" stop="56377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1977</number_coding_nucleotides>
                  <number_encoded_amino_acids>659</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGYINPFVKFIDQGRRFICNLCGHTDETPRDYQCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACSAISQVISDLPDGPRTLVGVATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLSECRQHLELLLESIPTMFQNNRIADSAFGAAVKAAFLAMKSTGGKLLVFQSVLPSTGIGALSAREAEGRTNVSAAEKEANKLLQPADKTLKTMAIEFAEYQVCVDVFLTTQSYVDIASISVIPRTTGGQVYYYFPFSALADTAKLYNDLRWNITRPQGFEAVMRVRCSQGLQVQEYSGNYCKRIPTDVDLPAIDCDKTIMVTLKHDDKLQDGSECSFQSAVLYTTIDGQRRIRVSTLALPCTTMLSNLFRSADLDTQFACILKQAASEVPTAPLSRIREQVTNLCINILHSYRKFCATVSSSGQLILPEALKLLPLYTLALVKSTGLRADGQIDSRSFWINYVSPLSTPLAIPLVYPRLIAIHEFDTKENDDSLIPPSIPLSSEHITDNGIYLLENGEDCLIYVGNSADPNVIRQLLGISSVEEIPAQFVLQQYDNPLSKKLNDIINDIRRQRCNYLRLKLCKKGDSSGMLFLSHMVEDKTQNGLSYVEFLVHIHRHIQNKMA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="78019" PGL_stop="79058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78025" e_stop="78154"/>
            <exon e_start="78393" e_stop="79058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78025" e_stop="78154" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78393" e_stop="79058" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78025" stop="78154"/>
              <exon start="78393" stop="78684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78030" stop="78154"/>
              <exon start="78393" stop="79058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78030" stop="78154"/>
              <exon start="78393" stop="78827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78031" stop="78154"/>
              <exon start="78393" stop="78446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG : AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTGGTAACCTATTGTTTGAGAAAATTTTTAGGATCTACAGTCATTCAGCAGTATGGATCTTTGAACACTGTTGTTTCTGCTTAGATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACTGTCAAGTCTCATTCTGAAGATCAAAAGAAATCAGGAAAAACAGCCCAAAATTTCATGGTTTCGATACCATTTAACCTCAAAGTGGATGTAGGTTCTAGGAATGAGGGTTCCTTGAATGATGAGTTACCGTTTTCTGAACTATGGGCTGGGCCAGCGTATTCAAAT</gDNA_template>
            <first_frame> N  H  K  N  Q  V  Q  *  Y  L  L  R  I  S  F  L  C  L  L  E  *  G  E  K  S  H  H  K  S  P  F  S  A  L  C  F  S  I  Y  F  L  T  S   : E  T  E  G  W  S  G  D  C  G  Y  I  F  H  R  R  A  C  *  R  I  V  W  I  Q  *  *  L  F  *  F  P  G  N  L  L  F  E  K  I  F  R  I  Y  S  H  S  A  V  W  I  F  E  H  C  C  F  C  L  D  F  Q  A  C  R  S  D  S  E  L  *  W  N  L  I  E  S  V  I  G  S  V  E  N  D  C  C  S  S  A  S  G  S  K  L  F  G  K  *  G  T  W  P  Y  S  I  W  V  I  W  F  T  S  L  W  W  V  H  G  G  K  L  S  G  F  *  V  Q  G  R  F  I  S  Y  Q  I  E  V  L  Q  E  T  C  H  Q  T  G  P  H  G  F  L  I  S  Q  N  A  T  T  F  N  I  T  A  C  *  Y  C  Q  V  S  F  *  R  S  K  E  I  R  K  N  S  P  K  F  H  G  F  D  T  I  *  P  Q  S  G  C  R  F  *  E  *  G  F  L  E  *  *  V  T  V  F  *  T  M  G  W  A  S  V  F  K  </first_frame>
            <second_frame>  T  I  K  T  K  Y  S  N  I  Y  C  A  F  R  F  F  A  Y  *  N  K  E  K  N  L  I  I  N  H  P  F  Q  H  S  A  S  V  Y  T  F  *  H  Q  :  K  L  K  G  G  V  V  I  V  D  I  F  F  I  D  V  R  V  E  E  *  F  G  F  S  D  S  Y  F  D  F  L  V  T  Y  C  L  R  K  F  L  G  S  T  V  I  Q  Q  Y  G  S  L  N  T  V  V  S  A  *  I  F  R  L  V  D  Q  I  V  S  Y  S  G  I  *  S  N  R  L  L  A  L  L  K  M  I  V  V  P  Q  H  R  D  Q  N  Y  L  E  S  R  A  H  G  P  T  R  F  G  S  F  G  S  P  P  S  G  G  F  M  E  V  N  C  R  A  F  E  S  R  A  G  L  Y  H  T  K  S  K  S  C  K  K  P  V  I  K  R  A  L  T  G  S  L  S  P  K  T  R  P  P  L  T  S  L  P  V  N  T  V  K  S  H  S  E  D  Q  K  K  S  G  K  T  A  Q  N  F  M  V  S  I  P  F  N  L  K  V  D  V  G  S  R  N  E  G  S  L  N  D  E  L  P  F  S  E  L  W  A  G  P  A  Y  S  N </second_frame>
            <third_frame>   P  *  K  P  S  T  V  I  S  T  A  H  F  V  S  L  L  I  R  I  R  R  K  I  S  S  *  I  T  L  F  S  T  L  L  Q  Y  I  L  S  D  I  R :   N  *  R  V  E  W  *  L  W  I  Y  F  S  *  T  C  V  L  K  N  S  L  D  S  V  I  V  I  L  I  S  W  *  P  I  V  *  E  N  F  *  D  L  Q  S  F  S  S  M  D  L  *  T  L  L  F  L  L  R  F  S  G  L  S  I  R  *  *  V  I  V  E  F  D  R  I  G  Y  W  L  C  *  K  *  L  L  F  L  S  I  G  I  K  T  I  W  K  V  G  H  M  A  L  L  D  L  G  H  L  V  H  L  P  L  V  G  S  W  R  *  I  V  G  L  L  S  P  G  Q  V  Y  I  I  P  N  R  S  L  A  R  N  L  S  S  N  G  P  S  R  V  P  Y  L  P  K  R  D  H  L  *  H  H  C  L  L  I  L  S  S  L  I  L  K  I  K  R  N  Q  E  K  Q  P  K  I  S  W  F  R  Y  H  L  T  S  K  W  M  *  V  L  G  M  R  V  P  *  M  M  S  Y  R  F  L  N  Y  G  L  G  Q  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78615" stop="79058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRLLALLKMIVVPQHRDQNYLESRAHGPTRFGSFGSPPSGGFMEVNCRAFESRAGLYHTKSKSCKKPVIKRALTGSLSPKTRPPLTSLPVNTVKSHSEDQKKSGKTAQNFMVSIPFNLKVDVGSRNEGSLNDELPFSELWAGPAYSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78019" e_stop="78154"/>
            <exon e_start="78393" e_stop="78488"/>
            <exon e_start="78570" e_stop="78893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.664" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78019" e_stop="78154" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="78155" i_stop="78392" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78393" e_stop="78488" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.664">
            <gDNA_intron_boundary i_start="78489" i_stop="78569" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78570" e_stop="78893" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78019" stop="78154"/>
              <exon start="78393" stop="78488"/>
              <exon start="78570" stop="78893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78031" stop="78154"/>
              <exon start="78393" stop="78446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGACAACCATAAAAACCAAGTACAGTAATATCTACTGCGCATTTCGTTTCTTTGCTTATTAGAATAAGGAGAAAAATCTCATCATAAATCACCCTTTTCAGCACTCTGCTTCAGTATATACTTTCTGACATCAG : AAACTGAAGGGTGGAGTGGTGATTGTGGATATATTTTTCATAGACGTGCGTGTTGAAGAATAGTTTGGATTCAGTGATAGTTATTTTGATTTCCTG : ATTTTCAGGCTTGTCGATCAGATAGTGAGTTATAGTGGAATTTGATCGAATCGGTTATTGGCTCTGTTGAAAATGATTGTTGTTCCTCAGCATCGGGATCAAAACTATTTGGAAAGTAGGGCACATGGCCCTACTCGATTTGGGTCATTTGGTTCACCTCCCTCTGGTGGGTTCATGGAGGTAAATTGTCGGGCTTTTGAGTCCAGGGCAGGTTTATATCATACCAAATCGAAGTCTTGCAAGAAACCTGTCATCAAACGGGCCCTCACGGGTTCCTTATCTCCCAAAACGCGACCACCTTTAACATCACTGCCTGTTAATACT</gDNA_template>
            <first_frame> T  D  N  H  K  N  Q  V  Q  *  Y  L  L  R  I  S  F  L  C  L  L  E  *  G  E  K  S  H  H  K  S  P  F  S  A  L  C  F  S  I  Y  F  L  T  S   : E  T  E  G  W  S  G  D  C  G  Y  I  F  H  R  R  A  C  *  R  I  V  W  I  Q  *  *  L  F  *  F  P   : D  F  Q  A  C  R  S  D  S  E  L  *  W  N  L  I  E  S  V  I  G  S  V  E  N  D  C  C  S  S  A  S  G  S  K  L  F  G  K  *  G  T  W  P  Y  S  I  W  V  I  W  F  T  S  L  W  W  V  H  G  G  K  L  S  G  F  *  V  Q  G  R  F  I  S  Y  Q  I  E  V  L  Q  E  T  C  H  Q  T  G  P  H  G  F  L  I  S  Q  N  A  T  T  F  N  I  T  A  C  *  Y  </first_frame>
            <second_frame>  L  T  T  I  K  T  K  Y  S  N  I  Y  C  A  F  R  F  F  A  Y  *  N  K  E  K  N  L  I  I  N  H  P  F  Q  H  S  A  S  V  Y  T  F  *  H  Q  :  K  L  K  G  G  V  V  I  V  D  I  F  F  I  D  V  R  V  E  E  *  F  G  F  S  D  S  Y  F  D  F  L  :  I  F  R  L  V  D  Q  I  V  S  Y  S  G  I  *  S  N  R  L  L  A  L  L  K  M  I  V  V  P  Q  H  R  D  Q  N  Y  L  E  S  R  A  H  G  P  T  R  F  G  S  F  G  S  P  P  S  G  G  F  M  E  V  N  C  R  A  F  E  S  R  A  G  L  Y  H  T  K  S  K  S  C  K  K  P  V  I  K  R  A  L  T  G  S  L  S  P  K  T  R  P  P  L  T  S  L  P  V  N  T </second_frame>
            <third_frame>   *  Q  P  *  K  P  S  T  V  I  S  T  A  H  F  V  S  L  L  I  R  I  R  R  K  I  S  S  *  I  T  L  F  S  T  L  L  Q  Y  I  L  S  D  I  R :   N  *  R  V  E  W  *  L  W  I  Y  F  S  *  T  C  V  L  K  N  S  L  D  S  V  I  V  I  L  I  S  * :   F  S  G  L  S  I  R  *  *  V  I  V  E  F  D  R  I  G  Y  W  L  C  *  K  *  L  L  F  L  S  I  G  I  K  T  I  W  K  V  G  H  M  A  L  L  D  L  G  H  L  V  H  L  P  L  V  G  S  W  R  *  I  V  G  L  L  S  P  G  Q  V  Y  I  I  P  N  R  S  L  A  R  N  L  S  S  N  G  P  S  R  V  P  Y  L  P  K  R  D  H  L  *  H  H  C  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78615" stop="78893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRLLALLKMIVVPQHRDQNYLESRAHGPTRFGSFGSPPSGGFMEVNCRAFESRAGLYHTKSKSCKKPVIKRALTGSLSPKTRPPLTSLPVNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="79092" PGL_stop="81375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79092" e_stop="80322"/>
            <exon e_start="80444" e_stop="80703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79092" e_stop="80322" e_length="1231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80323" i_stop="80443" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80444" e_stop="80703" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79092" stop="79777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79118" stop="79554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79256" stop="79746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79588" stop="80244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79815" stop="80322"/>
              <exon start="80444" stop="80703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80106" stop="80322"/>
              <exon start="80444" stop="80685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80218" stop="80322"/>
              <exon start="80444" stop="80701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80455" stop="80688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG : CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTATGTTCC</gDNA_template>
            <first_frame> F  F  L  R  P  K  R  N  A  S  L  E  F  P  T  S  A  C  D  I  H  L  R  P  I  A  K  S  A  P  A  S  P  T  R  E  S  S  L  S  P  G  I  V  F  D  N  T  D  S  V  T  Q  T  L  R  R  M  L  N  L  E  T  N  A  Q  I  L  L  E  T  N  D  G  *  M  C  G  G  S  S  E  *  Q  L  T  R  V  L  F  S  F  R  I  G  *  *  *  I  V  R  M  V  N  N  S  V  F  S  *  *  V  T  V  S  L  S  V  C  H  G  R  S  V  V  K  L  Q  H  L  S  R  L  V  I  L  R  G  I  Q  Y  E  Q  W  L  V  D  R  Y  S  P  G  I  F  K  V  R  A  V  M  V  R  L  *  G  V  Q  Q  M  E  Y  V  C  A  S  N  S  G  R  R  I  *  V  M  S  E  M  L  L  L  H  Y  S  N  R  *  L  V  V  L  C  R  G  C  V  T  C  C  S  T  I  F  A  A  L  E  M  N  L  L  *  P  S  I  V  I  L  D  S  S  V  V  G  L  F  I  A  S  S  C  S  F  D  V  L  *  I  G  D  I  V  Y  I  L  D  P  T  R  L  A  S  L  *  T  S  G  L  F  S  Y  *  I  L  A  F  S  S  N  S  A  S  *  P  S  L  F  L  S  R  F  K  F  L  T  R  K  *  D  I  W  Y  I  *  V  L  A  I  P  *  M  P  E  W  A  G  H  H  H  N  F  V  C  I  L  F  S  T  L  N  R  I  Y  V  L  L  L  P  L  E  V  V  S  P  *  P  I  F  C  F  L  G  M  K  I  G  *  G  N  Y  *  S  V  V  S  F  S  V  P  G  I  R  I  F  P  F  S  F  P  F  A  S  P  I  M  L  V  K  R  F  I  P  S  P  K  R  K  S  S  C  L  R  R  L  V  I  T  S  Y  *  *   : A  L  L  V  G  A  V  G  R  R  L  L  S  G  C  S  P  Y  S  L  L  S  P  W  *  H  Y  S  L  Y  V  I  S  V  S  L  *  D  V  V  C  R  S  F  D  Q  T  G  S  Y  Y  C  S  N  Y  L  V  M  S  C  F  R  F  W  S  F  T  F  V  V  E  L  V  D  F  K  V  A  F  *  L  R  L  Q  L  C  S </first_frame>
            <second_frame>  F  F  S  G  L  K  G  M  P  L  L  S  F  L  L  Q  H  V  I  F  I  Y  V  P  L  P  S  L  H  Q  H  L  Q  P  G  R  A  V  F  L  R  E  L  C  L  T  I  L  T  Q  *  H  R  L  F  V  A  C  S  T  L  K  L  M  P  K  F  S  L  K  L  M  M  D  E  C  V  V  G  V  L  N  S  S  *  L  G  Y  Y  L  V  F  V  L  G  N  S  R  *  F  V  W  *  I  I  Q  F  L  V  S  K  L  L  F  R  L  V  F  V  M  V  D  Q  *  *  S  C  N  I  C  Q  D  W  L  F  *  G  E  F  N  M  N  N  G  *  L  I  D  T  L  L  V  Y  S  K  F  V  Q  S  W  L  D  Y  E  G  F  N  K  W  S  M  F  V  H  R  T  V  E  E  E  S  E  *  *  V  R  C  S  Y  Y  I  T  V  I  D  S  L  *  F  F  V  E  V  A  *  L  V  A  Q  L  S  L  L  P  W  R  *  I  C  Y  N  H  Q  L  S  F  L  I  P  V  S  W  D  C  L  L  P  L  H  V  L  L  M  F  C  K  S  E  I  L  Y  I  S  *  T  L  P  D  *  H  P  F  R  L  L  V  Y  S  V  T  R  S  *  P  F  H  P  I  L  H  P  N  H  L  Y  F  L  V  D  S  N  S  *  L  G  N  R  T  F  G  I  S  K  S  L  L  F  L  E  C  L  N  G  L  V  I  I  I  T  L  Y  V  F  S  S  Q  L  *  I  G  Y  M  S  Y  F  F  L  L  K  L  F  P  L  D  Q  F  S  V  F  W  E  *  K  L  G  R  E  I  I  S  Q  L  Y  P  F  L  F  L  V  F  V  S  S  L  L  A  F  L  L  P  V  Q  L  C  *  L  R  G  L  F  L  H  Q  K  E  N  H  L  A  *  G  D  W  *  S  L  A  T  D  K  :  R  F  *  L  E  L  L  E  E  D  C  *  A  V  V  L  P  T  L  Y  S  R  H  G  S  T  T  R  Y  M  S  F  Q  C  L  Y  K  M  L  S  V  G  H  S  T  K  L  V  V  T  T  A  V  I  I  *  L  C  H  V  L  G  F  G  V  L  L  L  L  L  N  L  L  I  L  R  W  H  F  D  Y  D  F  N  Y  V   </second_frame>
            <third_frame>   F  S  Q  A  *  K  E  C  L  S  *  V  S  Y  F  S  M  *  Y  S  F  T  S  H  C  Q  V  C  T  S  I  S  N  Q  G  E  Q  S  F  S  G  N  C  V  *  Q  Y  *  L  S  D  T  D  S  S  S  H  A  Q  P  *  N  *  C  P  N  S  P  *  N  *  *  W  M  N  V  W  W  E  F  *  I  A  V  N  *  G  I  I  *  F  S  Y  W  V  I  V  D  S  S  Y  G  E  *  F  S  F  *  L  V  S  Y  C  F  A  *  C  L  S  W  *  I  S  S  E  V  A  T  S  V  K  I  G  Y  F  K  G  N  S  I  *  T  M  A  S  *  S  I  L  S  W  Y  I  Q  S  S  C  S  H  G  *  T  M  R  G  S  T  N  G  V  C  L  C  I  E  Q  W  K  K  N  L  S  D  E  *  D  A  P  I  T  L  Q  *  *  I  A  C  S  S  L  *  R  L  R  N  L  L  L  N  Y  L  C  C  P  G  D  E  F  V  I  T  I  N  C  H  S  *  F  Q  C  R  G  I  V  Y  C  L  F  M  F  F  *  C  S  V  N  R  R  Y  C  I  Y  L  R  P  Y  Q  I  S  I  P  L  D  F  W  F  I  Q  L  L  D  L  S  L  F  I  Q  F  C  I  L  T  I  S  I  S  *  *  I  Q  I  L  D  *  E  I  G  H  L  V  Y  L  S  P  C  Y  S  L  N  A  *  M  G  W  S  S  S  *  L  C  M  Y  S  L  L  N  S  E  *  D  I  C  P  T  S  S  S  *  S  C  F  P  L  T  N  F  L  F  F  G  N  E  N  W  V  G  K  L  L  V  S  C  I  L  F  C  S  W  Y  S  Y  L  P  F  *  L  S  F  C  Q  S  N  Y  A  S  *  E  V  Y  S  F  T  K  K  K  I  I  L  P  K  E  I  G  D  H  *  L  L  I  S :   A  F  S  W  S  C  W  K  K  I  V  E  R  L  F  S  L  L  S  T  L  A  M  V  A  L  L  V  I  C  H  F  S  V  S  I  R  C  C  L  *  V  I  R  P  N  W  *  L  L  L  Q  *  L  S  S  Y  V  M  F  *  V  L  E  F  Y  F  C  C  *  T  C  *  F  *  G  G  I  L  I  T  T  S  I  M  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79092" stop="79316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLRPKRNASLEFPTSACDIHLRPIAKSAPASPTRESSLSPGIVFDNTDSVTQTLRRMLNLETNAQILLETNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79092" e_stop="80322"/>
            <exon e_start="80444" e_stop="80697"/>
            <exon e_start="81350" e_stop="81375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.415" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79092" e_stop="80322" e_length="1231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80323" i_stop="80443" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80444" e_stop="80697" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.415">
            <gDNA_intron_boundary i_start="80698" i_stop="81349" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="81350" e_stop="81375" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79092" stop="79777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79118" stop="79554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79256" stop="79746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79588" stop="80244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79806" stop="80322"/>
              <exon start="80444" stop="80697"/>
              <exon start="81350" stop="81375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80106" stop="80322"/>
              <exon start="80444" stop="80685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80455" stop="80688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTCAGGCCTAAAAGGAATGCCTCTCTTGAGTTTCCTACTTCAGCATGTGATATTCATTTACGTCCCATTGCCAAGTCTGCACCAGCATCTCCAACCAGGGAGAGCAGTCTTTCTCCGGGAATTGTGTTTGACAATACTGACTCAGTGACACAGACTCTTCGTCGCATGCTCAACCTTGAAACTAATGCCCAAATTCTCCTTGAAACTAATGATGGATGAATGTGTGGTGGGAGTTCTGAATAGCAGTTAACTAGGGTATTATTTAGTTTTCGTATTGGGTAATAGTAGATAGTTCGTATGGTGAATAATTCAGTTTTTAGTTAGTAAGTTACTGTTTCGCTTAGTGTTTGTCATGGTAGATCAGTAGTGAAGTTGCAACATCTGTCAAGATTGGTTATTTTAAGGGGAATTCAATATGAACAATGGCTAGTTGATCGATACTCTCCTGGTATATTCAAAGTTCGTGCAGTCATGGTTAGACTATGAGGGGTTCAACAAATGGAGTATGTTTGTGCATCGAACAGTGGAAGAAGAATCTGAGTGATGAGTGAGATGCTCCTATTACATTACAGTAATAGATAGCTTGTAGTTCTTTGTAGAGGTTGCGTAACTTGTTGCTCAACTATCTTTGCTGCCCTGGAGATGAATTTGTTATAACCATCAATTGTCATTCTTGATTCCAGTGTCGTGGGATTGTTTATTGCCTCTTCATGTTCTTTTGATGTTCTGTAAATCGGAGATATTGTATATATCTTAGACCCTACCAGATTAGCATCCCTTTAGACTTCTGGTTTATTCAGTTACTAGATCTTAGCCTTTTCATCCAATTCTGCATCCTAACCATCTCTATTTCTTAGTAGATTCAAATTCTTGACTAGGAAATAGGACATTTGGTATATCTAAGTCCTTGCTATTCCTTGAATGCCTGAATGGGCTGGTCATCATCATAACTTTGTATGTATTCTCTTCTCAACTCTGAATAGGATATATGTCCTACTTCTTCCTCTTGAAGTTGTTTCCCCTTGACCAATTTTCTGTTTTTTGGGAATGAAAATTGGGTAGGGAAATTATTAGTCAGTTGTATCCTTTTCTGTTCCTGGTATTCGTATCTTCCCTTTTAGCTTTCCTTTTGCCAGTCCAATTATGCTAGTTAAGAGGTTTATTCCTTCACCAAAAAGAAAATCATCTTGCCTAAGGAGATTGGTGATCACTAGCTACTGATAAG : CGCTTTTAGTTGGAGCTGTTGGAAGAAGATTGTTGAGCGGTTGTTCTCCCTACTCTCTACTCTCGCCATGGTAGCACTACTCGTTATATGTCATTTCAGTGTCTCTATAAGATGTTGTCTGTAGGTCATTCGACCAAACTGGTAGTTACTACTGCAGTAATTATCTAGTTATGTCATGTTTTAGGTTTTGGAGTTTTACTTTTGTTGTTGAACTTGTTGATTTTAAGGTGGCATTTTGATTACGACTTCAATTA : AATTAACACAACCACCTGATTGTCGA</gDNA_template>
            <first_frame> F  F  L  R  P  K  R  N  A  S  L  E  F  P  T  S  A  C  D  I  H  L  R  P  I  A  K  S  A  P  A  S  P  T  R  E  S  S  L  S  P  G  I  V  F  D  N  T  D  S  V  T  Q  T  L  R  R  M  L  N  L  E  T  N  A  Q  I  L  L  E  T  N  D  G  *  M  C  G  G  S  S  E  *  Q  L  T  R  V  L  F  S  F  R  I  G  *  *  *  I  V  R  M  V  N  N  S  V  F  S  *  *  V  T  V  S  L  S  V  C  H  G  R  S  V  V  K  L  Q  H  L  S  R  L  V  I  L  R  G  I  Q  Y  E  Q  W  L  V  D  R  Y  S  P  G  I  F  K  V  R  A  V  M  V  R  L  *  G  V  Q  Q  M  E  Y  V  C  A  S  N  S  G  R  R  I  *  V  M  S  E  M  L  L  L  H  Y  S  N  R  *  L  V  V  L  C  R  G  C  V  T  C  C  S  T  I  F  A  A  L  E  M  N  L  L  *  P  S  I  V  I  L  D  S  S  V  V  G  L  F  I  A  S  S  C  S  F  D  V  L  *  I  G  D  I  V  Y  I  L  D  P  T  R  L  A  S  L  *  T  S  G  L  F  S  Y  *  I  L  A  F  S  S  N  S  A  S  *  P  S  L  F  L  S  R  F  K  F  L  T  R  K  *  D  I  W  Y  I  *  V  L  A  I  P  *  M  P  E  W  A  G  H  H  H  N  F  V  C  I  L  F  S  T  L  N  R  I  Y  V  L  L  L  P  L  E  V  V  S  P  *  P  I  F  C  F  L  G  M  K  I  G  *  G  N  Y  *  S  V  V  S  F  S  V  P  G  I  R  I  F  P  F  S  F  P  F  A  S  P  I  M  L  V  K  R  F  I  P  S  P  K  R  K  S  S  C  L  R  R  L  V  I  T  S  Y  *  *   : A  L  L  V  G  A  V  G  R  R  L  L  S  G  C  S  P  Y  S  L  L  S  P  W  *  H  Y  S  L  Y  V  I  S  V  S  L  *  D  V  V  C  R  S  F  D  Q  T  G  S  Y  Y  C  S  N  Y  L  V  M  S  C  F  R  F  W  S  F  T  F  V  V  E  L  V  D  F  K  V  A  F  *  L  R  L  Q  L  :  N  *  H  N  H  L  I  V   </first_frame>
            <second_frame>  F  F  S  G  L  K  G  M  P  L  L  S  F  L  L  Q  H  V  I  F  I  Y  V  P  L  P  S  L  H  Q  H  L  Q  P  G  R  A  V  F  L  R  E  L  C  L  T  I  L  T  Q  *  H  R  L  F  V  A  C  S  T  L  K  L  M  P  K  F  S  L  K  L  M  M  D  E  C  V  V  G  V  L  N  S  S  *  L  G  Y  Y  L  V  F  V  L  G  N  S  R  *  F  V  W  *  I  I  Q  F  L  V  S  K  L  L  F  R  L  V  F  V  M  V  D  Q  *  *  S  C  N  I  C  Q  D  W  L  F  *  G  E  F  N  M  N  N  G  *  L  I  D  T  L  L  V  Y  S  K  F  V  Q  S  W  L  D  Y  E  G  F  N  K  W  S  M  F  V  H  R  T  V  E  E  E  S  E  *  *  V  R  C  S  Y  Y  I  T  V  I  D  S  L  *  F  F  V  E  V  A  *  L  V  A  Q  L  S  L  L  P  W  R  *  I  C  Y  N  H  Q  L  S  F  L  I  P  V  S  W  D  C  L  L  P  L  H  V  L  L  M  F  C  K  S  E  I  L  Y  I  S  *  T  L  P  D  *  H  P  F  R  L  L  V  Y  S  V  T  R  S  *  P  F  H  P  I  L  H  P  N  H  L  Y  F  L  V  D  S  N  S  *  L  G  N  R  T  F  G  I  S  K  S  L  L  F  L  E  C  L  N  G  L  V  I  I  I  T  L  Y  V  F  S  S  Q  L  *  I  G  Y  M  S  Y  F  F  L  L  K  L  F  P  L  D  Q  F  S  V  F  W  E  *  K  L  G  R  E  I  I  S  Q  L  Y  P  F  L  F  L  V  F  V  S  S  L  L  A  F  L  L  P  V  Q  L  C  *  L  R  G  L  F  L  H  Q  K  E  N  H  L  A  *  G  D  W  *  S  L  A  T  D  K  :  R  F  *  L  E  L  L  E  E  D  C  *  A  V  V  L  P  T  L  Y  S  R  H  G  S  T  T  R  Y  M  S  F  Q  C  L  Y  K  M  L  S  V  G  H  S  T  K  L  V  V  T  T  A  V  I  I  *  L  C  H  V  L  G  F  G  V  L  L  L  L  L  N  L  L  I  L  R  W  H  F  D  Y  D  F  N  * :   I  N  T  T  T  *  L  S  </second_frame>
            <third_frame>   F  S  Q  A  *  K  E  C  L  S  *  V  S  Y  F  S  M  *  Y  S  F  T  S  H  C  Q  V  C  T  S  I  S  N  Q  G  E  Q  S  F  S  G  N  C  V  *  Q  Y  *  L  S  D  T  D  S  S  S  H  A  Q  P  *  N  *  C  P  N  S  P  *  N  *  *  W  M  N  V  W  W  E  F  *  I  A  V  N  *  G  I  I  *  F  S  Y  W  V  I  V  D  S  S  Y  G  E  *  F  S  F  *  L  V  S  Y  C  F  A  *  C  L  S  W  *  I  S  S  E  V  A  T  S  V  K  I  G  Y  F  K  G  N  S  I  *  T  M  A  S  *  S  I  L  S  W  Y  I  Q  S  S  C  S  H  G  *  T  M  R  G  S  T  N  G  V  C  L  C  I  E  Q  W  K  K  N  L  S  D  E  *  D  A  P  I  T  L  Q  *  *  I  A  C  S  S  L  *  R  L  R  N  L  L  L  N  Y  L  C  C  P  G  D  E  F  V  I  T  I  N  C  H  S  *  F  Q  C  R  G  I  V  Y  C  L  F  M  F  F  *  C  S  V  N  R  R  Y  C  I  Y  L  R  P  Y  Q  I  S  I  P  L  D  F  W  F  I  Q  L  L  D  L  S  L  F  I  Q  F  C  I  L  T  I  S  I  S  *  *  I  Q  I  L  D  *  E  I  G  H  L  V  Y  L  S  P  C  Y  S  L  N  A  *  M  G  W  S  S  S  *  L  C  M  Y  S  L  L  N  S  E  *  D  I  C  P  T  S  S  S  *  S  C  F  P  L  T  N  F  L  F  F  G  N  E  N  W  V  G  K  L  L  V  S  C  I  L  F  C  S  W  Y  S  Y  L  P  F  *  L  S  F  C  Q  S  N  Y  A  S  *  E  V  Y  S  F  T  K  K  K  I  I  L  P  K  E  I  G  D  H  *  L  L  I  S :   A  F  S  W  S  C  W  K  K  I  V  E  R  L  F  S  L  L  S  T  L  A  M  V  A  L  L  V  I  C  H  F  S  V  S  I  R  C  C  L  *  V  I  R  P  N  W  *  L  L  L  Q  *  L  S  S  Y  V  M  F  *  V  L  E  F  Y  F  C  C  *  T  C  *  F  *  G  G  I  L  I  T  T  S  I   : K  L  T  Q  P  P  D  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79092" stop="79316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLRPKRNASLEFPTSACDIHLRPIAKSAPASPTRESSLSPGIVFDNTDSVTQTLRRMLNLETNAQILLETNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="83832" PGL_stop="82968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83832" e_stop="83631"/>
            <exon e_start="82984" e_stop="82968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.654" e_score="0.926"/>
          <exon-only e_score="0.647"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="83832" e_stop="83631" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.654">
            <gDNA_intron_boundary i_start="83630" i_stop="82985" i_length="646"/>
          </intron>
          <exon e_serial="2" e_score="0.647">
            <gDNA_exon_boundary e_start="82984" e_stop="82968" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83832" stop="83631"/>
              <exon start="82984" stop="82968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCACACTTCATCTCACAAAAGGTATAACCTTGTCCTTGTTTAGCTGTGCATTCATCGTGACATGTGTGATAGCAATCCTGATACTCTTCTTCTGTGGCTTCACACACAGCTGTAAATACAACCATGCACATAAGAAACACTGCAACAAACTTTTGACCTTCCATTTTTATTTCTTTTAACAATTACTATTGCTTTACAGT : AGCTTTGCCTTGATTAA</gDNA_template>
            <first_frame> H  H  T  S  S  H  K  R  Y  N  L  V  L  V  *  L  C  I  H  R  D  M  C  D  S  N  P  D  T  L  L  L  W  L  H  T  Q  L  *  I  Q  P  C  T  *  E  T  L  Q  Q  T  F  D  L  P  F  L  F  L  L  T  I  T  I  A  L  Q   : *  L  C  L  D  * </first_frame>
            <second_frame>  I  T  L  H  L  T  K  G  I  T  L  S  L  F  S  C  A  F  I  V  T  C  V  I  A  I  L  I  L  F  F  C  G  F  T  H  S  C  K  Y  N  H  A  H  K  K  H  C  N  K  L  L  T  F  H  F  Y  F  F  *  Q  L  L  L  L  Y  S  :  S  F  A  L  I   </second_frame>
            <third_frame>   S  H  F  I  S  Q  K  V  *  P  C  P  C  L  A  V  H  S  S  *  H  V  *  *  Q  S  *  Y  S  S  S  V  A  S  H  T  A  V  N  T  T  M  H  I  R  N  T  A  T  N  F  *  P  S  I  F  I  S  F  N  N  Y  Y  C  F  T  V :   A  L  P  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0021K07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="83506" PGL_stop="84000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83506" e_stop="83547"/>
            <exon e_start="83659" e_stop="83859"/>
            <exon e_start="83931" e_stop="84000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.643"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.970"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.643">
            <gDNA_exon_boundary e_start="83506" e_stop="83547" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83548" i_stop="83658" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="83659" e_stop="83859" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83860" i_stop="83930" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="0.871">
            <gDNA_exon_boundary e_start="83931" e_stop="84000" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83506" stop="83547"/>
              <exon start="83659" stop="83859"/>
              <exon start="83931" stop="84000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATGAGAAGCCTTACCTTAATTTAAGCAAAACAAATAGAT : AAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTG : CTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACATAATAAAAGCAGTCGGATTAATTAAT</gDNA_template>
            <first_frame> F  M  R  S  L  T  L  I  *  A  K  Q  I  D  :  K  *  K  W  K  V  K  S  L  L  Q  C  F  L  C  A  W  L  Y  L  Q  L  C  V  K  P  Q  K  K  S  I  R  I  A  I  T  H  V  T  M  N  A  Q  L  N  K  D  K  V  I  P  F  V  R  *  S  V  M  Q  T  A  Q  R  R  I  S  L  :  L  N  S  L  N  S  R  L  N  E  E  D  Q  R  H  N  K  S  S  R  I  N  *  </first_frame>
            <second_frame>  L  *  E  A  L  P  *  F  K  Q  N  K  *  I :   N  K  N  G  R  S  K  V  C  C  S  V  S  Y  V  H  G  C  I  Y  S  C  V  *  S  H  R  R  R  V  S  G  L  L  S  H  M  S  R  *  M  H  S  *  T  R  T  R  L  Y  L  L  *  D  E  V  *  C  R  L  L  K  E  G  F  R  C :   S  I  P  *  I  Q  G  L  M  R  R  T  K  D  I  I  K  A  V  G  L  I  N </second_frame>
            <third_frame>   Y  E  K  P  Y  L  N  L  S  K  T  N  R   : *  I  K  M  E  G  Q  K  F  V  A  V  F  L  M  C  M  V  V  F  T  A  V  C  E  A  T  E  E  E  Y  Q  D  C  Y  H  T  C  H  D  E  C  T  A  K  Q  G  Q  G  Y  T  F  C  E  M  K  C  D  A  D  C  S  K  K  D  F  V   : A  Q  F  P  K  F  K  A  *  *  G  G  P  K  T  *  *  K  Q  S  D  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83661" stop="83859"/>
                    <exon start="83931" stop="83956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKMEGQKFVAVFLMCMVVFTAVCEATEEEYQDCYHTCHDECTAKQGQGYTFCEMKCDADCSKKDFVAQFPKFKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83647" e_stop="83859"/>
            <exon e_start="83931" e_stop="84000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.967"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="83647" e_stop="83859" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83860" i_stop="83930" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="83931" e_stop="84000" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83647" stop="83859"/>
              <exon start="83931" stop="84000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGTTAAAAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTG : CTCAATTCCCTAAATTCAAGGCTTAATGAGGAGGACCAAAGACATAATAAAAGCAGTCGGATTAATTAAT</gDNA_template>
            <first_frame> N  C  *  K  K  *  K  W  K  V  K  S  L  L  Q  C  F  L  C  A  W  L  Y  L  Q  L  C  V  K  P  Q  K  K  S  I  R  I  A  I  T  H  V  T  M  N  A  Q  L  N  K  D  K  V  I  P  F  V  R  *  S  V  M  Q  T  A  Q  R  R  I  S  L  :  L  N  S  L  N  S  R  L  N  E  E  D  Q  R  H  N  K  S  S  R  I  N  *  </first_frame>
            <second_frame>  I  V  K  R  N  K  N  G  R  S  K  V  C  C  S  V  S  Y  V  H  G  C  I  Y  S  C  V  *  S  H  R  R  R  V  S  G  L  L  S  H  M  S  R  *  M  H  S  *  T  R  T  R  L  Y  L  L  *  D  E  V  *  C  R  L  L  K  E  G  F  R  C :   S  I  P  *  I  Q  G  L  M  R  R  T  K  D  I  I  K  A  V  G  L  I  N </second_frame>
            <third_frame>   L  L  K  E  I  K  M  E  G  Q  K  F  V  A  V  F  L  M  C  M  V  V  F  T  A  V  C  E  A  T  E  E  E  Y  Q  D  C  Y  H  T  C  H  D  E  C  T  A  K  Q  G  Q  G  Y  T  F  C  E  M  K  C  D  A  D  C  S  K  K  D  F  V   : A  Q  F  P  K  F  K  A  *  *  G  G  P  K  T  *  *  K  Q  S  D  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83649" stop="83859"/>
                    <exon start="83931" stop="83956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKEIKMEGQKFVAVFLMCMVVFTAVCEATEEEYQDCYHTCHDECTAKQGQGYTFCEMKCDADCSKKDFVAQFPKFKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83557" e_stop="83594"/>
            <exon e_start="83656" e_stop="83859"/>
            <exon e_start="83931" e_stop="83963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.553"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.990"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.553">
            <gDNA_exon_boundary e_start="83557" e_stop="83594" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83595" i_stop="83655" i_length="61"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="83656" e_stop="83859" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83860" i_stop="83930" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="83931" e_stop="83963" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83557" stop="83594"/>
              <exon start="83656" stop="83859"/>
              <exon start="83931" stop="83963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGGAAATCCACATACATTTTTATTGTATAAATAGG : AAGAAATAAAAATGGAAGGTCAAAAGTTTGTTGCAGTGTTTCTTATGTGCATGGTTGTATTTACAGCTGTGTGTGAAGCCACAGAAGAAGAGTATCAGGATTGCTATCACACATGTCACGATGAATGCACAGCTAAACAAGGACAAGGTTATACCTTTTGTGAGATGAAGTGTGATGCAGACTGCTCAAAGAAGGATTTCGTTG : CTCAATTCCCTAAATTCAAGGCTTAATGAGGAG</gDNA_template>
            <first_frame> R  R  K  S  T  Y  I  F  I  V  *  I  G :   R  N  K  N  G  R  S  K  V  C  C  S  V  S  Y  V  H  G  C  I  Y  S  C  V  *  S  H  R  R  R  V  S  G  L  L  S  H  M  S  R  *  M  H  S  *  T  R  T  R  L  Y  L  L  *  D  E  V  *  C  R  L  L  K  E  G  F  R  C :   S  I  P  *  I  Q  G  L  M  R   </first_frame>
            <second_frame>  E  G  N  P  H  T  F  L  L  Y  K  *   : E  E  I  K  M  E  G  Q  K  F  V  A  V  F  L  M  C  M  V  V  F  T  A  V  C  E  A  T  E  E  E  Y  Q  D  C  Y  H  T  C  H  D  E  C  T  A  K  Q  G  Q  G  Y  T  F  C  E  M  K  C  D  A  D  C  S  K  K  D  F  V   : A  Q  F  P  K  F  K  A  *  *  G  </second_frame>
            <third_frame>   K  E  I  H  I  H  F  Y  C  I  N  R  :  K  K  *  K  W  K  V  K  S  L  L  Q  C  F  L  C  A  W  L  Y  L  Q  L  C  V  K  P  Q  K  K  S  I  R  I  A  I  T  H  V  T  M  N  A  Q  L  N  K  D  K  V  I  P  F  V  R  *  S  V  M  Q  T  A  Q  R  R  I  S  L  :  L  N  S  L  N  S  R  L  N  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83594" stop="83859"/>
                    <exon start="83931" stop="83956"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEIKMEGQKFVAVFLMCMVVFTAVCEATEEEYQDCYHTCHDECTAKQGQGYTFCEMKCDADCSKKDFVAQFPKFKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="85291" PGL_stop="84221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85291" e_stop="85132"/>
            <exon e_start="84410" e_stop="84221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85291" e_stop="85132" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="85131" i_stop="84411" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84410" e_stop="84221" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85291" stop="85132"/>
              <exon start="84410" stop="84221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCCAAATTATATATTTGGTGTGACCAAAAAACATAAACAAGTACTCTTGTAGATTTATCTGTCCTCTTAAAAACTGCTTTTTTTGTTTTGTTTTCAGAAAGAAATTATATGGCAAATATTTCTACTTGCTCCCTTCTCGTTGCTGCTGTTTTTCTAG : TTGGAATATTGATGATCCCATCGGAAATATTGGGAGAAACATGCTATCAAATACACCCAGAGATATTGTGTGATGAAGGCAAAGTTGAAGGGGAATGTTTACCTTTCTGCAATGACAAATTTGGATCCTCTGCTGGTGGACAATGCATTGAGCAAATTGGCTTTGATGGTCCTTTTTGTGCATGTGATTA</gDNA_template>
            <first_frame> S  S  K  L  Y  I  W  C  D  Q  K  T  *  T  S  T  L  V  D  L  S  V  L  L  K  T  A  F  F  V  L  F  S  E  R  N  Y  M  A  N  I  S  T  C  S  L  L  V  A  A  V  F  L   : V  G  I  L  M  I  P  S  E  I  L  G  E  T  C  Y  Q  I  H  P  E  I  L  C  D  E  G  K  V  E  G  E  C  L  P  F  C  N  D  K  F  G  S  S  A  G  G  Q  C  I  E  Q  I  G  F  D  G  P  F  C  A  C  D   </first_frame>
            <second_frame>  H  P  N  Y  I  F  G  V  T  K  K  H  K  Q  V  L  L  *  I  Y  L  S  S  *  K  L  L  F  L  F  C  F  Q  K  E  I  I  W  Q  I  F  L  L  A  P  F  S  L  L  L  F  F  *  :  L  E  Y  *  *  S  H  R  K  Y  W  E  K  H  A  I  K  Y  T  Q  R  Y  C  V  M  K  A  K  L  K  G  N  V  Y  L  S  A  M  T  N  L  D  P  L  L  V  D  N  A  L  S  K  L  A  L  M  V  L  F  V  H  V  I  </second_frame>
            <third_frame>   I  Q  I  I  Y  L  V  *  P  K  N  I  N  K  Y  S  C  R  F  I  C  P  L  K  N  C  F  F  C  F  V  F  R  K  K  L  Y  G  K  Y  F  Y  L  L  P  S  R  C  C  C  F  S  S :   W  N  I  D  D  P  I  G  N  I  G  R  N  M  L  S  N  T  P  R  D  I  V  *  *  R  Q  S  *  R  G  M  F  T  F  L  Q  *  Q  I  W  I  L  C  W  W  T  M  H  *  A  N  W  L  *  W  S  F  L  C  M  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85252" stop="85132"/>
                    <exon start="84410" stop="84223"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSTLVDLSVLLKTAFFVLFSERNYMANISTCSLLVAAVFLVGILMIPSEILGETCYQIHPEILCDEGKVEGECLPFCNDKFGSSAGGQCIEQIGFDGPFCACD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="92355" PGL_stop="88999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92355" e_stop="92212"/>
            <exon e_start="91385" e_stop="91323"/>
            <exon e_start="91100" e_stop="90984"/>
            <exon e_start="90900" e_stop="90622"/>
            <exon e_start="90464" e_stop="90351"/>
            <exon e_start="90059" e_stop="89987"/>
            <exon e_start="89854" e_stop="89788"/>
            <exon e_start="89257" e_stop="88999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.031" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="92355" e_stop="92212" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91385" e_stop="91323" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.031">
            <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91100" e_stop="90984" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90900" e_stop="90622" e_length="279"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90464" e_stop="90351" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90059" e_stop="89987" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89854" e_stop="89788" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="89257" e_stop="88999" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92355" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92315" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92313" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92285" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92285" stop="92212"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92281" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92268" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92261" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92259" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92256" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92245" stop="92212"/>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="90032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="90036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91046" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90988" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556509" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90702" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90658" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTATCACTTCTCTAAAACTTTTGGGGACCAAATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT : AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> K  F  I  T  S  L  K  L  L  G  T  K  F  P  N  L  L  N  P  N  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  :  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </first_frame>
            <second_frame>  N  L  S  L  L  *  N  F  W  G  P  N  S  Q  I  F  *  I  L  T  A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  R :   W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L :   G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </second_frame>
            <third_frame>   I  Y  H  F  S  K  T  F  G  D  Q  I  P  K  S  S  K  S  *  L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G   : *  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92355" stop="92212"/>
                    <exon start="91385" stop="91323"/>
                    <exon start="91100" stop="90984"/>
                    <exon start="90900" stop="90622"/>
                    <exon start="90464" stop="90351"/>
                    <exon start="90059" stop="89987"/>
                    <exon start="89854" stop="89817"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFITSLKLLGTKFPNLLNPNCGRPSSSLILSEAVRFAVAALLIFNGKKMEIKADGSDGSLVLIKQGAEARVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89251" stop="89000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92296" e_stop="92212"/>
            <exon e_start="91406" e_stop="91323"/>
            <exon e_start="91100" e_stop="90984"/>
            <exon e_start="90900" e_stop="90622"/>
            <exon e_start="90464" e_stop="90351"/>
            <exon e_start="90059" e_stop="89987"/>
            <exon e_start="89854" e_stop="89788"/>
            <exon e_start="89257" e_stop="88999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.934" e_score="0.960"/>
          <exon-intron don_prob="0.993" acc_prob="0.031" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="92296" e_stop="92212" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.934">
            <gDNA_intron_boundary i_start="92211" i_stop="91407" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91406" e_stop="91323" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.031">
            <gDNA_intron_boundary i_start="91322" i_stop="91101" i_length="222"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91100" e_stop="90984" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90900" e_stop="90622" e_length="279"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90464" e_stop="90351" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90059" e_stop="89987" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89854" e_stop="89788" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="89257" e_stop="88999" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92296" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92296" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92288" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="90032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92286" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="90049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92286" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92286" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92243" stop="92212"/>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91406" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="90032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91385" stop="91323"/>
              <exon start="91100" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="90036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91046" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90988" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556509" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90702" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90658" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : TTAATTGGAAATTTTACTTAGATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCT : AGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : V  N  W  K  F  Y  L  D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G   : *  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </first_frame>
            <second_frame>  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  L  I  G  N  F  T  *  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  :  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </second_frame>
            <third_frame>   A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  S :   *  L  E  I  L  L  R  W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L :   G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91385" stop="91323"/>
                    <exon start="91100" stop="90984"/>
                    <exon start="90900" stop="90622"/>
                    <exon start="90464" stop="90351"/>
                    <exon start="90059" stop="89987"/>
                    <exon start="89854" stop="89817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEIKADGSDGSLVLIKQGAEARVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89251" stop="89000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="92321" e_stop="92212"/>
            <exon e_start="91385" e_stop="90984"/>
            <exon e_start="90900" e_stop="90622"/>
            <exon e_start="90464" e_stop="90351"/>
            <exon e_start="90059" e_stop="89987"/>
            <exon e_start="89854" e_stop="89788"/>
            <exon e_start="89257" e_stop="88999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.900"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="0.973"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="92321" e_stop="92212" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="92211" i_stop="91386" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="91385" e_stop="90984" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90983" i_stop="90901" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90900" e_stop="90622" e_length="279"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="90621" i_stop="90465" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90464" e_stop="90351" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.633" acc_prob="0.987">
            <gDNA_intron_boundary i_start="90350" i_stop="90060" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90059" e_stop="89987" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.994">
            <gDNA_intron_boundary i_start="89986" i_stop="89855" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89854" e_stop="89788" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89787" i_stop="89258" i_length="530"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="89257" e_stop="88999" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92321" stop="92212"/>
              <exon start="91385" stop="91049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91132" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91046" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90988" stop="90984"/>
              <exon start="90900" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556509" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90702" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90658" stop="90622"/>
              <exon start="90464" stop="90351"/>
              <exon start="90059" stop="89987"/>
              <exon start="89854" stop="89788"/>
              <exon start="89257" stop="89002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCCCAAATCTTCTAAATCCTAACTGCGGTCGTCCTTCTTCTTCACTCATACTGTCCGAAGCTGTGCGGTTTGCGGTGGCGGCGCTGCTCATCTTCAACGGCAAAAAG : ATGGAAATCAAGGCAGATGGAAGTGATGGATCATTGGTTTTAATCAAGCAAGGAGCTGAGGCTGTGAGTTTATATTTAGTTCATATAAAACTTTCCTGTAATATTTCTGATCTTTTTCTCTCACTTTTTTGGGAAAGATTTTGTGTGCACATGTGTCTTTTGTATAGTTTATGAGTTAATAATAATTTATACTACTGTTTCTGCCAATGTTCATTTGATGGCAAGTAGTTGTTGACTCTAGAATTTCTGAAACACTTTATCTTGTTTCTCTGTTGAGGATATCAGAGGGTATTTGAGTCAACATTTGTGGGTAGTAGAAGGTGTATTATCAAGGAACGGTTTTCAAAGAAATACAGGCATCCGATTTTGGACTCAAAGCTCACTCTTAAACGGTTGAATGCG : GAAGCAAGGTGCATGACAAAAGCTAGACGGCTTGGTGTTGTCACTCCAGTGTTGTATGCTGTTGACACTGTTATGCACACTCTCACCTTTGAATATGTTGAAGGTCCTTCGGTGAAAGATATATTGCTTGGCTTTGGACTAGTTGGAGTTGACGAAGAACGAATGGCTGATATTACAACACAGATTGGTAATGCTATTGGAAAACTACACGATGGTGGCCTAGTCCATGGCGATTTGACAACATCAAACATGTTACTGAGGAGTTCTGCCAATCAGCTG : GTGCTGATTGACTTTGGTCTAAGCTTTACTTCAACGCTTCCAGAAGATAAAGCAGTTGATTTATATGTACTGGAACGTGCTTTACTCTCTATGCACTCTTCTTGTGGAAATGTG : ATGGACCGTATACTTGCTGCATATAGGAAGTCCTCAAAGCAATGGTCATCAACCTTGAACAAGCTAGCGGAAG : TGAGGCAAAGAGGAAGAAAGCGCACAATGGTTGGTTGAGTTTCTGCAGTTCTGCACTCCACGTGGAG : TGATGACATGGGGCAGGAGAAAGCTTAAGACTGCAAAGACCAATCTGTATTCTTGATTATTGTAGTGTGGGTGATGCTACTCATGTTAATTGTTTGAATTTGCCTTGTATCTACTATTATCTGCATTCTTATTCAACCCGTAGAAGAAACTGCTGCCTTGGTAATTGGATTATTTGTAGACGAATCTCTGTTAAGGTTGATCCAAACGACAACGTTTACACATTTTACAACTCATCATGCATGTTCTTCAAATCCCAAT</gDNA_template>
            <first_frame> N  S  Q  I  F  *  I  L  T  A  V  V  L  L  L  H  S  Y  C  P  K  L  C  G  L  R  W  R  R  C  S  S  S  T  A  K  R :   W  K  S  R  Q  M  E  V  M  D  H  W  F  *  S  S  K  E  L  R  L  *  V  Y  I  *  F  I  *  N  F  P  V  I  F  L  I  F  F  S  H  F  F  G  K  D  F  V  C  T  C  V  F  C  I  V  Y  E  L  I  I  I  Y  T  T  V  S  A  N  V  H  L  M  A  S  S  C  *  L  *  N  F  *  N  T  L  S  C  F  S  V  E  D  I  R  G  Y  L  S  Q  H  L  W  V  V  E  G  V  L  S  R  N  G  F  Q  R  N  T  G  I  R  F  W  T  Q  S  S  L  L  N  G  *  M  R :   K  Q  G  A  *  Q  K  L  D  G  L  V  L  S  L  Q  C  C  M  L  L  T  L  L  C  T  L  S  P  L  N  M  L  K  V  L  R  *  K  I  Y  C  L  A  L  D  *  L  E  L  T  K  N  E  W  L  I  L  Q  H  R  L  V  M  L  L  E  N  Y  T  M  V  A  *  S  M  A  I  *  Q  H  Q  T  C  Y  *  G  V  L  P  I  S  W :   C  *  L  T  L  V  *  A  L  L  Q  R  F  Q  K  I  K  Q  L  I  Y  M  Y  W  N  V  L  Y  S  L  C  T  L  L  V  E  M  * :   W  T  V  Y  L  L  H  I  G  S  P  Q  S  N  G  H  Q  P  *  T  S  *  R  K  :  *  G  K  E  E  E  S  A  Q  W  L  V  E  F  L  Q  F  C  T  P  R  G   : V  M  T  W  G  R  R  K  L  K  T  A  K  T  N  L  Y  S  *  L  L  *  C  G  *  C  Y  S  C  *  L  F  E  F  A  L  Y  L  L  L  S  A  F  L  F  N  P  *  K  K  L  L  P  W  *  L  D  Y  L  *  T  N  L  C  *  G  *  S  K  R  Q  R  L  H  I  L  Q  L  I  M  H  V  L  Q  I  P   </first_frame>
            <second_frame>  I  P  K  S  S  K  S  *  L  R  S  S  F  F  F  T  H  T  V  R  S  C  A  V  C  G  G  G  A  A  H  L  Q  R  Q  K   : D  G  N  Q  G  R  W  K  *  W  I  I  G  F  N  Q  A  R  S  *  G  C  E  F  I  F  S  S  Y  K  T  F  L  *  Y  F  *  S  F  S  L  T  F  L  G  K  I  L  C  A  H  V  S  F  V  *  F  M  S  *  *  *  F  I  L  L  F  L  P  M  F  I  *  W  Q  V  V  V  D  S  R  I  S  E  T  L  Y  L  V  S  L  L  R  I  S  E  G  I  *  V  N  I  C  G  *  *  K  V  Y  Y  Q  G  T  V  F  K  E  I  Q  A  S  D  F  G  L  K  A  H  S  *  T  V  E  C   : G  S  K  V  H  D  K  S  *  T  A  W  C  C  H  S  S  V  V  C  C  *  H  C  Y  A  H  S  H  L  *  I  C  *  R  S  F  G  E  R  Y  I  A  W  L  W  T  S  W  S  *  R  R  T  N  G  *  Y  Y  N  T  D  W  *  C  Y  W  K  T  T  R  W  W  P  S  P  W  R  F  D  N  I  K  H  V  T  E  E  F  C  Q  S  A   : G  A  D  *  L  W  S  K  L  Y  F  N  A  S  R  R  *  S  S  *  F  I  C  T  G  T  C  F  T  L  Y  A  L  F  L  W  K  C   : D  G  P  Y  T  C  C  I  *  E  V  L  K  A  M  V  I  N  L  E  Q  A  S  G  S :   E  A  K  R  K  K  A  H  N  G  W  L  S  F  C  S  S  A  L  H  V  E  :  *  *  H  G  A  G  E  S  L  R  L  Q  R  P  I  C  I  L  D  Y  C  S  V  G  D  A  T  H  V  N  C  L  N  L  P  C  I  Y  Y  Y  L  H  S  Y  S  T  R  R  R  N  C  C  L  G  N  W  I  I  C  R  R  I  S  V  K  V  D  P  N  D  N  V  Y  T  F  Y  N  S  S  C  M  F  F  K  S  Q  </second_frame>
            <third_frame>   F  P  N  L  L  N  P  N  C  G  R  P  S  S  S  L  I  L  S  E  A  V  R  F  A  V  A  A  L  L  I  F  N  G  K  K  :  M  E  I  K  A  D  G  S  D  G  S  L  V  L  I  K  Q  G  A  E  A  V  S  L  Y  L  V  H  I  K  L  S  C  N  I  S  D  L  F  L  S  L  F  W  E  R  F  C  V  H  M  C  L  L  Y  S  L  *  V  N  N  N  L  Y  Y  C  F  C  Q  C  S  F  D  G  K  *  L  L  T  L  E  F  L  K  H  F  I  L  F  L  C  *  G  Y  Q  R  V  F  E  S  T  F  V  G  S  R  R  C  I  I  K  E  R  F  S  K  K  Y  R  H  P  I  L  D  S  K  L  T  L  K  R  L  N  A  :  E  A  R  C  M  T  K  A  R  R  L  G  V  V  T  P  V  L  Y  A  V  D  T  V  M  H  T  L  T  F  E  Y  V  E  G  P  S  V  K  D  I  L  L  G  F  G  L  V  G  V  D  E  E  R  M  A  D  I  T  T  Q  I  G  N  A  I  G  K  L  H  D  G  G  L  V  H  G  D  L  T  T  S  N  M  L  L  R  S  S  A  N  Q  L  :  V  L  I  D  F  G  L  S  F  T  S  T  L  P  E  D  K  A  V  D  L  Y  V  L  E  R  A  L  L  S  M  H  S  S  C  G  N  V  :  M  D  R  I  L  A  A  Y  R  K  S  S  K  Q  W  S  S  T  L  N  K  L  A  E   : V  R  Q  R  G  R  K  R  T  M  V  G  *  V  S  A  V  L  H  S  T  W  S :   D  D  M  G  Q  E  K  A  *  D  C  K  D  Q  S  V  F  L  I  I  V  V  W  V  M  L  L  M  L  I  V  *  I  C  L  V  S  T  I  I  C  I  L  I  Q  P  V  E  E  T  A  A  L  V  I  G  L  F  V  D  E  S  L  L  R  L  I  Q  T  T  T  F  T  H  F  T  T  H  H  A  C  S  S  N  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91109" stop="90984"/>
                    <exon start="90900" stop="90622"/>
                    <exon start="90464" stop="90351"/>
                    <exon start="90059" stop="89987"/>
                    <exon start="89854" stop="89817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYQRVFESTFVGSRRCIIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVVTPVLYAVDTVMHTLTFEYVEGPSVKDILLGFGLVGVDEERMADITTQIGNAIGKLHDGGLVHGDLTTSNMLLRSSANQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92319" stop="92212"/>
                    <exon start="91385" stop="91212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPNLLNPNCGRPSSSLILSEAVRFAVAALLIFNGKKMEIKADGSDGSLVLIKQGAEAVSLYLVHIKLSCNISDLFLSLFWERFCVHMCLLYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89251" stop="89000"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGAGESLRLQRPICILDYCSVGDATHVNCLNLPCIYYYLHSYSTRRRNCCLGNWIICRRISVKVDPNDNVYTFYNSSCMFFKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="93278" PGL_stop="94818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93278" e_stop="93472"/>
            <exon e_start="94245" e_stop="94818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93278" e_stop="93472" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93473" i_stop="94244" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="94245" e_stop="94818" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93278" stop="93472"/>
              <exon start="94245" stop="94527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93295" stop="93472"/>
              <exon start="94245" stop="94818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCGGTGTAACCATTAGAGTTTGCTAACACAATTGGTGGATGGCTCCTCTAAAGAAATCCAAGAAAGATTCTAACAAGTTGAAGAAAATCAAAGCCAAAAACAAGAAAAACAACATTGTTCCTGCTGAGAACAAAGGAACTGAATGCGATTGGTGGGATAGTTTCTGGCACAAGAATAAAACATCAACCCCAG : GTTCTGGTGTACCTAGTGATGAAGAGGAAGGTTTCAAGTATTTTTTCCGTGTTTCCAACAAGACTTTTGATTACATATGTTCACTTGTAAGGGAGGACCTTATCTCAAGACCTCCTTCAGGTCTGATAAACATTGAGGGAAGACTTCTTAGTGTTGAGAAGCAAGTTGCGATTGCATTGAGAAGATTGGCTTCTGGTGAATCCCAAGTTTCAGTTGGGGCATCATTTGGGGTTGGGCAGTCCACTGTGTCTCAGGTTACCTGGAGATTCATTGAGGCACTGGAAGAACGTGCAAAGCACCATCTTAAGTGGCCAGAACCTAGTAAGATGGATATAATCAAGTCTGAGTTTGAACAATCATTTGGTTTGCCTAACTGTTGTGGAGCAATTGATGCAACTCACATCATAATGACTCTTCCTGCTATTCAAACCTCAGATGATTGGTGTGATCAGGAAAGCAATTACAGCATGCTTTTGCAAGGTATTGTGGACAGCGAGATGCGTTTTTTAGACATAGTGACAGGATGGCCTGGGGGCATGACCACTTCAAGGCTGTTCAAGTGCTCTGGATTTTA</gDNA_template>
            <first_frame> F  S  V  *  P  L  E  F  A  N  T  I  G  G  W  L  L  *  R  N  P  R  K  I  L  T  S  *  R  K  S  K  P  K  T  R  K  T  T  L  F  L  L  R  T  K  E  L  N  A  I  G  G  I  V  S  G  T  R  I  K  H  Q  P  Q  :  V  L  V  Y  L  V  M  K  R  K  V  S  S  I  F  S  V  F  P  T  R  L  L  I  T  Y  V  H  L  *  G  R  T  L  S  Q  D  L  L  Q  V  *  *  T  L  R  E  D  F  L  V  L  R  S  K  L  R  L  H  *  E  D  W  L  L  V  N  P  K  F  Q  L  G  H  H  L  G  L  G  S  P  L  C  L  R  L  P  G  D  S  L  R  H  W  K  N  V  Q  S  T  I  L  S  G  Q  N  L  V  R  W  I  *  S  S  L  S  L  N  N  H  L  V  C  L  T  V  V  E  Q  L  M  Q  L  T  S  *  *  L  F  L  L  F  K  P  Q  M  I  G  V  I  R  K  A  I  T  A  C  F  C  K  V  L  W  T  A  R  C  V  F  *  T  *  *  Q  D  G  L  G  A  *  P  L  Q  G  C  S  S  A  L  D  F  </first_frame>
            <second_frame>  F  R  C  N  H  *  S  L  L  T  Q  L  V  D  G  S  S  K  E  I  Q  E  R  F  *  Q  V  E  E  N  Q  S  Q  K  Q  E  K  Q  H  C  S  C  *  E  Q  R  N  *  M  R  L  V  G  *  F  L  A  Q  E  *  N  I  N  P  R :   F  W  C  T  *  *  *  R  G  R  F  Q  V  F  F  P  C  F  Q  Q  D  F  *  L  H  M  F  T  C  K  G  G  P  Y  L  K  T  S  F  R  S  D  K  H  *  G  K  T  S  *  C  *  E  A  S  C  D  C  I  E  K  I  G  F  W  *  I  P  S  F  S  W  G  I  I  W  G  W  A  V  H  C  V  S  G  Y  L  E  I  H  *  G  T  G  R  T  C  K  A  P  S  *  V  A  R  T  *  *  D  G  Y  N  Q  V  *  V  *  T  I  I  W  F  A  *  L  L  W  S  N  *  C  N  S  H  H  N  D  S  S  C  Y  S  N  L  R  *  L  V  *  S  G  K  Q  L  Q  H  A  F  A  R  Y  C  G  Q  R  D  A  F  F  R  H  S  D  R  M  A  W  G  H  D  H  F  K  A  V  Q  V  L  W  I  L </second_frame>
            <third_frame>   F  G  V  T  I  R  V  C  *  H  N  W  W  M  A  P  L  K  K  S  K  K  D  S  N  K  L  K  K  I  K  A  K  N  K  K  N  N  I  V  P  A  E  N  K  G  T  E  C  D  W  W  D  S  F  W  H  K  N  K  T  S  T  P   : G  S  G  V  P  S  D  E  E  E  G  F  K  Y  F  F  R  V  S  N  K  T  F  D  Y  I  C  S  L  V  R  E  D  L  I  S  R  P  P  S  G  L  I  N  I  E  G  R  L  L  S  V  E  K  Q  V  A  I  A  L  R  R  L  A  S  G  E  S  Q  V  S  V  G  A  S  F  G  V  G  Q  S  T  V  S  Q  V  T  W  R  F  I  E  A  L  E  E  R  A  K  H  H  L  K  W  P  E  P  S  K  M  D  I  I  K  S  E  F  E  Q  S  F  G  L  P  N  C  C  G  A  I  D  A  T  H  I  I  M  T  L  P  A  I  Q  T  S  D  D  W  C  D  Q  E  S  N  Y  S  M  L  L  Q  G  I  V  D  S  E  M  R  F  L  D  I  V  T  G  W  P  G  G  M  T  T  S  R  L  F  K  C  S  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93307" stop="93472"/>
                    <exon start="94245" stop="94816"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNWWMAPLKKSKKDSNKLKKIKAKNKKNNIVPAENKGTECDWWDSFWHKNKTSTPGSGVPSDEEEGFKYFFRVSNKTFDYICSLVREDLISRPPSGLINIEGRLLSVEKQVAIALRRLASGESQVSVGASFGVGQSTVSQVTWRFIEALEERAKHHLKWPEPSKMDIIKSEFEQSFGLPNCCGAIDATHIIMTLPAIQTSDDWCDQESNYSMLLQGIVDSEMRFLDIVTGWPGGMTTSRLFKCSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="99254" PGL_stop="97592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99254" e_stop="99180"/>
            <exon e_start="98869" e_stop="98753"/>
            <exon e_start="98626" e_stop="98500"/>
            <exon e_start="98278" e_stop="97992"/>
            <exon e_start="97909" e_stop="97719"/>
            <exon e_start="97609" e_stop="97592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99254" e_stop="99180" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99179" i_stop="98870" i_length="310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98869" e_stop="98753" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="98752" i_stop="98627" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98626" e_stop="98500" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.913" acc_prob="0.992">
            <gDNA_intron_boundary i_start="98499" i_stop="98279" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98278" e_stop="97992" e_length="287"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97991" i_stop="97910" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97909" e_stop="97719" e_length="191"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97718" i_stop="97610" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97609" e_stop="97592" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99180"/>
              <exon start="98869" stop="98753"/>
              <exon start="98626" stop="98500"/>
              <exon start="98278" stop="97992"/>
              <exon start="97909" stop="97719"/>
              <exon start="97609" stop="97592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGCCATTGACGTCTGTCATATTGGGAACGATTCTCGTTTATATAACGCATGCTGAAAAACACGGTGTTGCTGTG : ATTGGAGAGCTGAAGAAAGGGATAAATCCACCATCAATAATGGATCTGTCGTTTGGATCGAAATATATGACAACGGCTATCAAAACTGGCATAGTCACGGGTGTCATTGCCCTTGCT : GAAGGAATAGCAGTAGGTCGAAGTTTTGCAATGTTCAAGAATTACCATATAGATGGTAACAAAGAGATGATTGCTTTTGGGATGATGAACATTGTTGGCTCATGCACTTCTTGTTACCTCACTACTG : GGCCATTCTCGCGATCAGCAGTGAACTTCAATGCTGGATGCAAAACAGCAGTATCAAACATTGTCATGGCGTTGGCTGTGATGGTGACGTTGCTATTGCTAACGCCATTGTTCCACTTCACTCCTCTCGTCGTGTTGTCATCCATTATTATTGCTGCCATGCTCGGACTCATCGACTATAATGCTGCCATTCATCTCTGGCATGTCGACAAATTCGACTTCCTCGTTTGCATGAGTGCATACATTGGTGTTGTCTTTGGCAACATTGAAATTGGCTTAGTCATGGCT : GTTGGCTTATCGTTGCTAAGGGTATTACTTTCTGTAGCAAGGCCAAGGACTTTAGTACTTGGTAATATTCCCAATTCTATGATCTACAGAAATGTGGAGCAATATCCAAATACAAACAACGTTCCAGGCGTTCTCATACTTGACATTGGAGCTCCTATTTTCTTCACTAACTCAAGCTATTTAAGAGAGAG : GATCTCAAGGTGGATTGA</gDNA_template>
            <first_frame> A  P  L  T  S  V  I  L  G  T  I  L  V  Y  I  T  H  A  E  K  H  G  V  A  V  :  I  G  E  L  K  K  G  I  N  P  P  S  I  M  D  L  S  F  G  S  K  Y  M  T  T  A  I  K  T  G  I  V  T  G  V  I  A  L  A  :  E  G  I  A  V  G  R  S  F  A  M  F  K  N  Y  H  I  D  G  N  K  E  M  I  A  F  G  M  M  N  I  V  G  S  C  T  S  C  Y  L  T  T   : G  P  F  S  R  S  A  V  N  F  N  A  G  C  K  T  A  V  S  N  I  V  M  A  L  A  V  M  V  T  L  L  L  L  T  P  L  F  H  F  T  P  L  V  V  L  S  S  I  I  I  A  A  M  L  G  L  I  D  Y  N  A  A  I  H  L  W  H  V  D  K  F  D  F  L  V  C  M  S  A  Y  I  G  V  V  F  G  N  I  E  I  G  L  V  M  A  :  V  G  L  S  L  L  R  V  L  L  S  V  A  R  P  R  T  L  V  L  G  N  I  P  N  S  M  I  Y  R  N  V  E  Q  Y  P  N  T  N  N  V  P  G  V  L  I  L  D  I  G  A  P  I  F  F  T  N  S  S  Y  L  R  E  R :   I  S  R  W  I   </first_frame>
            <second_frame>  R  H  *  R  L  S  Y  W  E  R  F  S  F  I  *  R  M  L  K  N  T  V  L  L  * :   L  E  S  *  R  K  G  *  I  H  H  Q  *  W  I  C  R  L  D  R  N  I  *  Q  R  L  S  K  L  A  *  S  R  V  S  L  P  L  L :   K  E  *  Q  *  V  E  V  L  Q  C  S  R  I  T  I  *  M  V  T  K  R  *  L  L  L  G  *  *  T  L  L  A  H  A  L  L  V  T  S  L  L  :  G  H  S  R  D  Q  Q  *  T  S  M  L  D  A  K  Q  Q  Y  Q  T  L  S  W  R  W  L  *  W  *  R  C  Y  C  *  R  H  C  S  T  S  L  L  S  S  C  C  H  P  L  L  L  L  P  C  S  D  S  S  T  I  M  L  P  F  I  S  G  M  S  T  N  S  T  S  S  F  A  *  V  H  T  L  V  L  S  L  A  T  L  K  L  A  *  S  W  L :   L  A  Y  R  C  *  G  Y  Y  F  L  *  Q  G  Q  G  L  *  Y  L  V  I  F  P  I  L  *  S  T  E  M  W  S  N  I  Q  I  Q  T  T  F  Q  A  F  S  Y  L  T  L  E  L  L  F  S  S  L  T  Q  A  I  *  E  R   : G  S  Q  G  G  L  </second_frame>
            <third_frame>   A  I  D  V  C  H  I  G  N  D  S  R  L  Y  N  A  C  *  K  T  R  C  C  C   : D  W  R  A  E  E  R  D  K  S  T  I  N  N  G  S  V  V  W  I  E  I  Y  D  N  G  Y  Q  N  W  H  S  H  G  C  H  C  P  C   : *  R  N  S  S  R  S  K  F  C  N  V  Q  E  L  P  Y  R  W  *  Q  R  D  D  C  F  W  D  D  E  H  C  W  L  M  H  F  L  L  P  H  Y  W :   A  I  L  A  I  S  S  E  L  Q  C  W  M  Q  N  S  S  I  K  H  C  H  G  V  G  C  D  G  D  V  A  I  A  N  A  I  V  P  L  H  S  S  R  R  V  V  I  H  Y  Y  C  C  H  A  R  T  H  R  L  *  C  C  H  S  S  L  A  C  R  Q  I  R  L  P  R  L  H  E  C  I  H  W  C  C  L  W  Q  H  *  N  W  L  S  H  G   : C  W  L  I  V  A  K  G  I  T  F  C  S  K  A  K  D  F  S  T  W  *  Y  S  Q  F  Y  D  L  Q  K  C  G  A  I  S  K  Y  K  Q  R  S  R  R  S  H  T  *  H  W  S  S  Y  F  L  H  *  L  K  L  F  K  R  E  :  D  L  K  V  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99254" stop="99180"/>
                    <exon start="98869" stop="98753"/>
                    <exon start="98626" stop="98500"/>
                    <exon start="98278" stop="97992"/>
                    <exon start="97909" stop="97719"/>
                    <exon start="97609" stop="97594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLTSVILGTILVYITHAEKHGVAVIGELKKGINPPSIMDLSFGSKYMTTAIKTGIVTGVIALAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMALAVMVTLLLLTPLFHFTPLVVLSSIIIAAMLGLIDYNAAIHLWHVDKFDFLVCMSAYIGVVFGNIEIGLVMAVGLSLLRVLLSVARPRTLVLGNIPNSMIYRNVEQYPNTNNVPGVLILDIGAPIFFTNSSYLRERISRWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="112493" PGL_stop="111054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112493" e_stop="112223"/>
            <exon e_start="112143" e_stop="112030"/>
            <exon e_start="111960" e_stop="111803"/>
            <exon e_start="111725" e_stop="111054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112493" e_stop="112223" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112222" i_stop="112144" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112143" e_stop="112030" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="112029" i_stop="111961" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111960" e_stop="111803" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.992">
            <gDNA_intron_boundary i_start="111802" i_stop="111726" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="111725" e_stop="111054" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112493" stop="112223"/>
              <exon start="112143" stop="112030"/>
              <exon start="111960" stop="111803"/>
              <exon start="111725" stop="111054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112478" stop="112223"/>
              <exon start="112143" stop="112030"/>
              <exon start="111960" stop="111803"/>
              <exon start="111725" stop="111645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112477" stop="112223"/>
              <exon start="112143" stop="112030"/>
              <exon start="111960" stop="111803"/>
              <exon start="111725" stop="111674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112272" stop="112223"/>
              <exon start="112143" stop="112030"/>
              <exon start="111960" stop="111803"/>
              <exon start="111725" stop="111427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAAGATGTGGCAGCAGACGTGGAATACGCCTTACCGGAAAGATGACGTGGAAGGCGGAGCAAGGCCGTTGTATCCGGCGATGTTGGAGAATCCACAACTCCGTTGGGGTTTTATTCGGAAAGTTTACTCAATTTTGTCTCTACAGTTGCTTATAACAATTGCAGTGGGCGCTGTTGTTGTTACGGTTCACCCAATTGCACATTTTTTTGTGTCAACTGGGGCTGGATTAGCTCTCTATATTCTTCTTATCATCGCTCCCTTCATCA : CATTGAGCCCGTTGTATTACTATCACCAGAAACATCCGGTGAATTTCTTGCTTCTTGGGTTGTTTACAGTTACTCTGGCCTTCGCTGTAGGATTAACTTGTGCCTTCACCAGTG : GGAAAGTAATATTGGAGTCCGTCATATTAACCGCAGCAGTTGTGCTTAGTTTGACCATATACACATTTTGGGCAGCAAGGAGAGGCCACGATTTTAATTTCCTTGGACCATTCTTATTTGGTGCCCTTATGGTTCTCATGTTGTTTGCCTTTATTCAG : TTACTGTTTCCTCTGGGTAGGCTCTCTGTGATGATCTATGGCTGTTTAGCGTCCATTTTGTTCTGCGCATATATAATTTATGATACGGATAGTTTAATCAAGCGCTACACTTACGATGAGTACATCTGGGCTGCTGTCGGACTGTATCTGGACGTTATCAATCTATTCTTATCTATATTGACTATTTTTAGAGCTGCTGAATAGTTTCCTTGACAAATAAATAACAAAAATGTTACATTTGCTCTATAAAGAACATTGTTTATCTATTGTATAAATCAATAATTTTTTTTATTACGAAACTCGTTGTTAGTATTTGTAAGGTTGATGGATATGTGAGTGACCAAAAGTTGATAGCTGAAATATTATATTGTATAAAGGGGTTATATCTGCAAAACATTTGCCCTTTGGGGCAAAGTTGAAATATATAGTAGCCGCAAAAAAGAAGTTTGAGTGAATCAGCCCTACTTTTCGGCCTAAATCCAAATTTGGTTGCTGTTTTGGCAACAATTTTACTTGAAGCAAAACTCATATTGGGCTTTGTCACTCATGTCTTGGAAAGTCAGATCTTGGGCTTCAACTAGCAGGTGTACTTGGGAAAAATCCCAAAGTTTGTGGGTGTACTATAGTTCGACTTCATATATAGACAGATTGAGAATGAACGTTTTCTTTGAA</gDNA_template>
            <first_frame> Y  C  K  M  W  Q  Q  T  W  N  T  P  Y  R  K  D  D  V  E  G  G  A  R  P  L  Y  P  A  M  L  E  N  P  Q  L  R  W  G  F  I  R  K  V  Y  S  I  L  S  L  Q  L  L  I  T  I  A  V  G  A  V  V  V  T  V  H  P  I  A  H  F  F  V  S  T  G  A  G  L  A  L  Y  I  L  L  I  I  A  P  F  I   : T  L  S  P  L  Y  Y  Y  H  Q  K  H  P  V  N  F  L  L  L  G  L  F  T  V  T  L  A  F  A  V  G  L  T  C  A  F  T  S   : G  K  V  I  L  E  S  V  I  L  T  A  A  V  V  L  S  L  T  I  Y  T  F  W  A  A  R  R  G  H  D  F  N  F  L  G  P  F  L  F  G  A  L  M  V  L  M  L  F  A  F  I  Q  :  L  L  F  P  L  G  R  L  S  V  M  I  Y  G  C  L  A  S  I  L  F  C  A  Y  I  I  Y  D  T  D  S  L  I  K  R  Y  T  Y  D  E  Y  I  W  A  A  V  G  L  Y  L  D  V  I  N  L  F  L  S  I  L  T  I  F  R  A  A  E  *  F  P  *  Q  I  N  N  K  N  V  T  F  A  L  *  R  T  L  F  I  Y  C  I  N  Q  *  F  F  L  L  R  N  S  L  L  V  F  V  R  L  M  D  M  *  V  T  K  S  *  *  L  K  Y  Y  I  V  *  R  G  Y  I  C  K  T  F  A  L  W  G  K  V  E  I  Y  S  S  R  K  K  E  V  *  V  N  Q  P  Y  F  S  A  *  I  Q  I  W  L  L  F  W  Q  Q  F  Y  L  K  Q  N  S  Y  W  A  L  S  L  M  S  W  K  V  R  S  W  A  S  T  S  R  C  T  W  E  K  S  Q  S  L  W  V  Y  Y  S  S  T  S  Y  I  D  R  L  R  M  N  V  F  F  E </first_frame>
            <second_frame>  I  V  R  C  G  S  R  R  G  I  R  L  T  G  K  M  T  W  K  A  E  Q  G  R  C  I  R  R  C  W  R  I  H  N  S  V  G  V  L  F  G  K  F  T  Q  F  C  L  Y  S  C  L  *  Q  L  Q  W  A  L  L  L  L  R  F  T  Q  L  H  I  F  L  C  Q  L  G  L  D  *  L  S  I  F  F  L  S  S  L  P  S  S  :  H  *  A  R  C  I  T  I  T  R  N  I  R  *  I  S  C  F  L  G  C  L  Q  L  L  W  P  S  L  *  D  *  L  V  P  S  P  V  :  G  K  *  Y  W  S  P  S  Y  *  P  Q  Q  L  C  L  V  *  P  Y  T  H  F  G  Q  Q  G  E  A  T  I  L  I  S  L  D  H  S  Y  L  V  P  L  W  F  S  C  C  L  P  L  F  S :   Y  C  F  L  W  V  G  S  L  *  *  S  M  A  V  *  R  P  F  C  S  A  H  I  *  F  M  I  R  I  V  *  S  S  A  T  L  T  M  S  T  S  G  L  L  S  D  C  I  W  T  L  S  I  Y  S  Y  L  Y  *  L  F  L  E  L  L  N  S  F  L  D  K  *  I  T  K  M  L  H  L  L  Y  K  E  H  C  L  S  I  V  *  I  N  N  F  F  Y  Y  E  T  R  C  *  Y  L  *  G  *  W  I  C  E  *  P  K  V  D  S  *  N  I  I  L  Y  K  G  V  I  S  A  K  H  L  P  F  G  A  K  L  K  Y  I  V  A  A  K  K  K  F  E  *  I  S  P  T  F  R  P  K  S  K  F  G  C  C  F  G  N  N  F  T  *  S  K  T  H  I  G  L  C  H  S  C  L  G  K  S  D  L  G  L  Q  L  A  G  V  L  G  K  N  P  K  V  C  G  C  T  I  V  R  L  H  I  *  T  D  *  E  *  T  F  S  L   </second_frame>
            <third_frame>   L  *  D  V  A  A  D  V  E  Y  A  L  P  E  R  *  R  G  R  R  S  K  A  V  V  S  G  D  V  G  E  S  T  T  P  L  G  F  Y  S  E  S  L  L  N  F  V  S  T  V  A  Y  N  N  C  S  G  R  C  C  C  Y  G  S  P  N  C  T  F  F  C  V  N  W  G  W  I  S  S  L  Y  S  S  Y  H  R  S  L  H  H :   I  E  P  V  V  L  L  S  P  E  T  S  G  E  F  L  A  S  W  V  V  Y  S  Y  S  G  L  R  C  R  I  N  L  C  L  H  Q  W :   E  S  N  I  G  V  R  H  I  N  R  S  S  C  A  *  F  D  H  I  H  I  L  G  S  K  E  R  P  R  F  *  F  P  W  T  I  L  I  W  C  P  Y  G  S  H  V  V  C  L  Y  S   : V  T  V  S  S  G  *  A  L  C  D  D  L  W  L  F  S  V  H  F  V  L  R  I  Y  N  L  *  Y  G  *  F  N  Q  A  L  H  L  R  *  V  H  L  G  C  C  R  T  V  S  G  R  Y  Q  S  I  L  I  Y  I  D  Y  F  *  S  C  *  I  V  S  L  T  N  K  *  Q  K  C  Y  I  C  S  I  K  N  I  V  Y  L  L  Y  K  S  I  I  F  F  I  T  K  L  V  V  S  I  C  K  V  D  G  Y  V  S  D  Q  K  L  I  A  E  I  L  Y  C  I  K  G  L  Y  L  Q  N  I  C  P  L  G  Q  S  *  N  I  *  *  P  Q  K  R  S  L  S  E  S  A  L  L  F  G  L  N  P  N  L  V  A  V  L  A  T  I  L  L  E  A  K  L  I  L  G  F  V  T  H  V  L  E  S  Q  I  L  G  F  N  *  Q  V  Y  L  G  K  I  P  K  F  V  G  V  L  *  F  D  F  I  Y  R  Q  I  E  N  E  R  F  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112493" stop="112223"/>
                    <exon start="112143" stop="112030"/>
                    <exon start="111960" stop="111803"/>
                    <exon start="111725" stop="111522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCKMWQQTWNTPYRKDDVEGGARPLYPAMLENPQLRWGFIRKVYSILSLQLLITIAVGAVVVTVHPIAHFFVSTGAGLALYILLIIAPFITLSPLYYYHQKHPVNFLLLGLFTVTLAFAVGLTCAFTSGKVILESVILTAAVVLSLTIYTFWAARRGHDFNFLGPFLFGALMVLMLFAFIQLLFPLGRLSVMIYGCLASILFCAYIIYDTDSLIKRYTYDEYIWAAVGLYLDVINLFLSILTIFRAAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111248" stop="111054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLLFWQQFYLKQNSYWALSLMSWKVRSWASTSRCTWEKSQSLWVYYSSTSYIDRLRMNVFFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111501" stop="111307"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKCYICSIKNIVYLLYKSIIFFITKLVVSICKVDGYVSDQKLIAEILYCIKGLYLQNICPLGQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="118575" PGL_stop="119222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118575" e_stop="119222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="118575" e_stop="119222" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118575" stop="119222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118575" stop="119146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACTTCATCAGCTAACTTGGATATCTATTTAAGCGATCGAATTGGGACTTGTTCACCAAGTGACTATGCAAGTGGGGCTGATCTTAGCTTCCCACCCCACATTACACCTACAGGAAGTGGTCCTATACAAGACAACATTCAGATGAATCCCACCTTTTCTAGTGGTCTCAATGACAGAGGTGATGTTGTTTACAACCTCCTTATTTTAGCGGTCACAATACTTTCAAATGTTCCAGATAACTTTTTTTTTCCTTATGCTTCTTTAATGAGTCTGTGCATGATGTAGGGAACTGTTATTGACTAAAAACTTTTCAACATCTAAGAAATTAGTGAACATTGCTTCTCAAAAATTAAATAATCATTGTTTTCAATAAGTAACCAGATTAATCACAAACTTTGTGTTTTAACCTTTGAGTCTGTTCTTTCTAAGCTCCTAAATGATTCTTGCATTGTATTATAAGATAGCATCAGATTCCTGCGTCACTGGAACCAACCATCCTCCCTGGGACACATTCATAAGGTGCCATGGTTCATAAATTGAGTGATGTATTATAAGTGATTAAATAGTGAATACAGCAGTGAATCCATTGCGTTTATTTCCCCTTGTTTGCTTATCCTATAGCATATCTTTTTTTGTTTTTCGCT</gDNA_template>
            <first_frame> N  N  F  I  S  *  L  G  Y  L  F  K  R  S  N  W  D  L  F  T  K  *  L  C  K  W  G  *  S  *  L  P  T  P  H  Y  T  Y  R  K  W  S  Y  T  R  Q  H  S  D  E  S  H  L  F  *  W  S  Q  *  Q  R  *  C  C  L  Q  P  P  Y  F  S  G  H  N  T  F  K  C  S  R  *  L  F  F  S  L  C  F  F  N  E  S  V  H  D  V  G  N  C  Y  *  L  K  T  F  Q  H  L  R  N  *  *  T  L  L  L  K  N  *  I  I  I  V  F  N  K  *  P  D  *  S  Q  T  L  C  F  N  L  *  V  C  S  F  *  A  P  K  *  F  L  H  C  I  I  R  *  H  Q  I  P  A  S  L  E  P  T  I  L  P  G  T  H  S  *  G  A  M  V  H  K  L  S  D  V  L  *  V  I  K  *  *  I  Q  Q  *  I  H  C  V  Y  F  P  L  F  A  Y  P  I  A  Y  L  F  L  F  F  A </first_frame>
            <second_frame>  T  T  S  S  A  N  L  D  I  Y  L  S  D  R  I  G  T  C  S  P  S  D  Y  A  S  G  A  D  L  S  F  P  P  H  I  T  P  T  G  S  G  P  I  Q  D  N  I  Q  M  N  P  T  F  S  S  G  L  N  D  R  G  D  V  V  Y  N  L  L  I  L  A  V  T  I  L  S  N  V  P  D  N  F  F  F  P  Y  A  S  L  M  S  L  C  M  M  *  G  T  V  I  D  *  K  L  F  N  I  *  E  I  S  E  H  C  F  S  K  I  K  *  S  L  F  S  I  S  N  Q  I  N  H  K  L  C  V  L  T  F  E  S  V  L  S  K  L  L  N  D  S  C  I  V  L  *  D  S  I  R  F  L  R  H  W  N  Q  P  S  S  L  G  H  I  H  K  V  P  W  F  I  N  *  V  M  Y  Y  K  *  L  N  S  E  Y  S  S  E  S  I  A  F  I  S  P  C  L  L  I  L  *  H  I  F  F  C  F  S   </second_frame>
            <third_frame>   Q  L  H  Q  L  T  W  I  S  I  *  A  I  E  L  G  L  V  H  Q  V  T  M  Q  V  G  L  I  L  A  S  H  P  T  L  H  L  Q  E  V  V  L  Y  K  T  T  F  R  *  I  P  P  F  L  V  V  S  M  T  E  V  M  L  F  T  T  S  L  F  *  R  S  Q  Y  F  Q  M  F  Q  I  T  F  F  F  L  M  L  L  *  *  V  C  A  *  C  R  E  L  L  L  T  K  N  F  S  T  S  K  K  L  V  N  I  A  S  Q  K  L  N  N  H  C  F  Q  *  V  T  R  L  I  T  N  F  V  F  *  P  L  S  L  F  F  L  S  S  *  M  I  L  A  L  Y  Y  K  I  A  S  D  S  C  V  T  G  T  N  H  P  P  W  D  T  F  I  R  C  H  G  S  *  I  E  *  C  I  I  S  D  *  I  V  N  T  A  V  N  P  L  R  L  F  P  L  V  C  L  S  Y  S  I  S  F  F  V  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118576" stop="118863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSSANLDIYLSDRIGTCSPSDYASGADLSFPPHITPTGSGPIQDNIQMNPTFSSGLNDRGDVVYNLLILAVTILSNVPDNFFFPYASLMSLCMM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="119497" PGL_stop="120161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119497" e_stop="120161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="119497" e_stop="120161" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119497" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGAAACTGAGGTTGGGGATGCGCACCAGATTTCTGCTTATGTCTTGAAATGTTCGGAGGCCACATCATGTTGTAGTGTACGGATAGTTGCATGAAGTGTGATGATGGTAGCACTTGGGACAATATCTGTGAAACTGCCTTATCTATCTAGGTTTGTCTGTAATGTAAATGAAGATAGAATTAGTGAGAAATAGTGGTCAAGTCATGAAACCTTTTTTGCTTTTCGTATAACAGCTAGTCGCCCTCTTCAATATTGATTTTAGGCTGCAGCATTTCCCTGTTGATGGAACCATTCTCAATGATCTTGCTTACTTGGAATTATACGTCCAATTTTGTTGCTGGGAGCTGGAGACAAACCAGCGGAACTGCATGACATAGAATGTGAATGGGTCATGCTCTCTGATGATCCTTGACGTTTAAAATAAGCTTTCCTGTTCCGTTGTTTGATCGAAATAACGTGATTGAAGGCTTAATTTCTTCTTCAAGTTTGTCATTTCAGCTATTTATTGACTAGGACTGCATTGCAGGATACTGCACATGCGAAGAAGTATTGGGAAAGAATTGTCTTCTCCTCTACTTATGTTTCTTTCCCTTTATATAATACCTACCTTTCTCCTGTAAAATCTGAAGTTCAAGATCATGATAGCACATGTATGATTATCTA</gDNA_template>
            <first_frame> S  E  T  E  V  G  D  A  H  Q  I  S  A  Y  V  L  K  C  S  E  A  T  S  C  C  S  V  R  I  V  A  *  S  V  M  M  V  A  L  G  T  I  S  V  K  L  P  Y  L  S  R  F  V  C  N  V  N  E  D  R  I  S  E  K  *  W  S  S  H  E  T  F  F  A  F  R  I  T  A  S  R  P  L  Q  Y  *  F  *  A  A  A  F  P  C  *  W  N  H  S  Q  *  S  C  L  L  G  I  I  R  P  I  L  L  L  G  A  G  D  K  P  A  E  L  H  D  I  E  C  E  W  V  M  L  S  D  D  P  *  R  L  K  *  A  F  L  F  R  C  L  I  E  I  T  *  L  K  A  *  F  L  L  Q  V  C  H  F  S  Y  L  L  T  R  T  A  L  Q  D  T  A  H  A  K  K  Y  W  E  R  I  V  F  S  S  T  Y  V  S  F  P  L  Y  N  T  Y  L  S  P  V  K  S  E  V  Q  D  H  D  S  T  C  M  I  I   </first_frame>
            <second_frame>  R  K  L  R  L  G  M  R  T  R  F  L  L  M  S  *  N  V  R  R  P  H  H  V  V  V  Y  G  *  L  H  E  V  *  *  W  *  H  L  G  Q  Y  L  *  N  C  L  I  Y  L  G  L  S  V  M  *  M  K  I  E  L  V  R  N  S  G  Q  V  M  K  P  F  L  L  F  V  *  Q  L  V  A  L  F  N  I  D  F  R  L  Q  H  F  P  V  D  G  T  I  L  N  D  L  A  Y  L  E  L  Y  V  Q  F  C  C  W  E  L  E  T  N  Q  R  N  C  M  T  *  N  V  N  G  S  C  S  L  M  I  L  D  V  *  N  K  L  S  C  S  V  V  *  S  K  *  R  D  *  R  L  N  F  F  F  K  F  V  I  S  A  I  Y  *  L  G  L  H  C  R  I  L  H  M  R  R  S  I  G  K  E  L  S  S  P  L  L  M  F  L  S  L  Y  I  I  P  T  F  L  L  *  N  L  K  F  K  I  M  I  A  H  V  *  L  S  </second_frame>
            <third_frame>   G  N  *  G  W  G  C  A  P  D  F  C  L  C  L  E  M  F  G  G  H  I  M  L  *  C  T  D  S  C  M  K  C  D  D  G  S  T  W  D  N  I  C  E  T  A  L  S  I  *  V  C  L  *  C  K  *  R  *  N  *  *  E  I  V  V  K  S  *  N  L  F  C  F  S  Y  N  S  *  S  P  S  S  I  L  I  L  G  C  S  I  S  L  L  M  E  P  F  S  M  I  L  L  T  W  N  Y  T  S  N  F  V  A  G  S  W  R  Q  T  S  G  T  A  *  H  R  M  *  M  G  H  A  L  *  *  S  L  T  F  K  I  S  F  P  V  P  L  F  D  R  N  N  V  I  E  G  L  I  S  S  S  S  L  S  F  Q  L  F  I  D  *  D  C  I  A  G  Y  C  T  C  E  E  V  L  G  K  N  C  L  L  L  Y  L  C  F  F  P  F  I  *  Y  L  P  F  S  C  K  I  *  S  S  R  S  *  *  H  M  Y  D  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0021K07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="127120" PGL_stop="126651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127120" e_stop="126651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="127120" e_stop="126651" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127120" stop="126651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCAGTGGGAAGAATTCACCGTCAGCTCAAGACCAGAACCTCTGCCCATGGCAGGGTTGGAGCAACAGCAGCTGTTTACTCTGCTGCAATTCTGGAGTACCTGACTGCAGAGGTTCTTGAGTTAGCTGGTAATGCAAGCAAGGATCTTAAAGTGAAGAGAATCACTCCCAGGCACTTGCAACTGGCCATTCGTGGAGATGAGGAACTTGACACCCTTATCAAAGGTACTATTGCTGGTGGTGGTGTCATCCCTCACATTCACAAGTCCCTCATAAACAAAACCACCAAGGAGTGAAATTCTCTTGTGTTATCTTAGATGTATCTTGACTAATGACATTGCCTGTGCTTATGTTTTTTCCGCTTTATCTGGGTTAGCTAATGACAGGGCACTGTTGGTTGTGTTTGATTAGAATAATTATCTGATGTAATGAACTTCTGAACATATTAGTTTGATGTTTTCATATTGTT</gDNA_template>
            <first_frame> F  P  V  G  R  I  H  R  Q  L  K  T  R  T  S  A  H  G  R  V  G  A  T  A  A  V  Y  S  A  A  I  L  E  Y  L  T  A  E  V  L  E  L  A  G  N  A  S  K  D  L  K  V  K  R  I  T  P  R  H  L  Q  L  A  I  R  G  D  E  E  L  D  T  L  I  K  G  T  I  A  G  G  G  V  I  P  H  I  H  K  S  L  I  N  K  T  T  K  E  *  N  S  L  V  L  S  *  M  Y  L  D  *  *  H  C  L  C  L  C  F  F  R  F  I  W  V  S  *  *  Q  G  T  V  G  C  V  *  L  E  *  L  S  D  V  M  N  F  *  T  Y  *  F  D  V  F  I  L   </first_frame>
            <second_frame>  F  Q  W  E  E  F  T  V  S  S  R  P  E  P  L  P  M  A  G  L  E  Q  Q  Q  L  F  T  L  L  Q  F  W  S  T  *  L  Q  R  F  L  S  *  L  V  M  Q  A  R  I  L  K  *  R  E  S  L  P  G  T  C  N  W  P  F  V  E  M  R  N  L  T  P  L  S  K  V  L  L  L  V  V  V  S  S  L  T  F  T  S  P  S  *  T  K  P  P  R  S  E  I  L  L  C  Y  L  R  C  I  L  T  N  D  I  A  C  A  Y  V  F  S  A  L  S  G  L  A  N  D  R  A  L  L  V  V  F  D  *  N  N  Y  L  M  *  *  T  S  E  H  I  S  L  M  F  S  Y  C  </second_frame>
            <third_frame>   S  S  G  K  N  S  P  S  A  Q  D  Q  N  L  C  P  W  Q  G  W  S  N  S  S  C  L  L  C  C  N  S  G  V  P  D  C  R  G  S  *  V  S  W  *  C  K  Q  G  S  *  S  E  E  N  H  S  Q  A  L  A  T  G  H  S  W  R  *  G  T  *  H  P  Y  Q  R  Y  Y  C  W  W  W  C  H  P  S  H  S  Q  V  P  H  K  Q  N  H  Q  G  V  K  F  S  C  V  I  L  D  V  S  *  L  M  T  L  P  V  L  M  F  F  P  L  Y  L  G  *  L  M  T  G  H  C  W  L  C  L  I  R  I  I  I  *  C  N  E  L  L  N  I  L  V  *  C  F  H  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0021K07.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127120" stop="126824"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPVGRIHRQLKTRTSAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 467 chains have been computed
$ 
$ memory statistics:
$ 586408 bytes spliced alignments in total
$ 147 spliced alignments have been stored
$ 3989 bytes was the average size of a spliced alignment
$ 32224 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1696 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 551 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:45:47
-->
