<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:56:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6650" ref_strand="+" ref_description="SGN-M6650 C2_At1g18340 [cosii_markers]">
      <seq>ctacacctgaccggtgaattaaggtttattccaccggcggccatgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagtatcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagcttcttgcaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3714" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3414" g_stop="3342" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3238" g_stop="3141" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="171" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="415" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1656" g_stop="1619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="500" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1543" g_stop="1498" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="546" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1336" g_stop="1283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="600" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1178" g_stop="1110" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="669" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.225" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="276" g_stop="230" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="716" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-M6650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3414" e_stop="3342"/>
          <exon e_start="3238" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1656" e_stop="1619"/>
          <exon e_start="1543" e_stop="1498"/>
          <exon e_start="1336" e_stop="1283"/>
          <exon e_start="1178" e_stop="1110"/>
          <exon e_start="276" e_stop="230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCTGTAAGTGTTATTAAAATTATTAATACTAAGTTGTCTCTCTTTGTCAAAAAAAATACTAAGTTGTCTCTAGCTTAGCATTTTAACTTGTCAATAGCATGGATCCAACATTGAACATCTACGGTTGTCTCCAGTGCTGCCTTCAGACATTAGTTTCTATCTGATGTGTAAGCATGTTGAACAAGTCACTATACTTTGATTTGTTTAGTGTATGCAATTTTTGTTTCCAAGGAGCTTACACTAAAAAGACCTTCCAAAAGTTTGACCTATTTTAAATCTGGTATTAAATATTTAATATATGTACTACTATTGTTGGTGTTGGAGATACAGTGATCAACCAAAAGGCTATGACTGAAAGTACCAATGTACTCTTTGTGGACTTAGAAAATCTTCTCCAAATGTCTTCTGGACTGCCGCAGTCCGATGGCTTCTCCTTTTGCCCTCTATAGTGAACTTCTCATGCTTTGTCTCTGTGAGTAGGAGATAATAATATCATGAATGAAGATGTGATTGTTGTATGACCTTATTTTCAACATTTCGTTCACGTTTCATGGAATGCAATAGACCCATTGCTAAAACCACTTCCACGACTAGAATACAGTATCTACACCAGAAGTTATATTGAAATTGATTTCTTATTCAAGATGTTCTTTCACATCAACAAGTTGCATATTTCTGTCTGATGCGGTTGGTGTACTGTGCTTTCATTCACCTGGTGTGATCTGTAAGATGGTTAAATGCCTTGTTTTATTTTTGAGATGTTTTATTTGTAGAATGTCTTGTCTTGAGATCTAATTTTCCGTTTGAAAATACTGACAAGACTGTAATAAATACAGACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</genome_strand>
        <mrna_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6650-2" ref_strand="+" ref_description="SGN-M6650-2 C2_At1g18340-2 [cosii_markers]">
      <seq>atcggcgacactctctacactgaccggtgaattcaggtttattccaccggcggccatgactccggtttcatccaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaatactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaatcaagtggttgtgattgcaactggttacaattcatgtgattatgtatttgattcgtctacttcgtcaatgcaaagggctgagtgcttgttggagaaattggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttggattttcgctgctttctggttcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacagcctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagcgcaacgttcaatggtacccattgattcatgtgtaataggatctcatcattctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagtatcagatggactgtttcaatatctctctacagtttttgcgactgatttacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3728" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3428" g_stop="3342" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3238" g_stop="3141" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="184" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="428" r_length="244" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.288" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="475" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1656" g_stop="1619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="513" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1543" g_stop="1498" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="559" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1336" g_stop="1283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="613" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1178" g_stop="1110" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="682" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.225" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="276" g_stop="251" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="708" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-M6650-2" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6650-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3428" e_stop="3342"/>
          <exon e_start="3238" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1656" e_stop="1619"/>
          <exon e_start="1543" e_stop="1498"/>
          <exon e_start="1336" e_stop="1283"/>
          <exon e_start="1178" e_stop="1110"/>
          <exon e_start="276" e_stop="251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGCGACGCTCTCTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCTGTAAGTGTTATTAAAATTATTAATACTAAGTTGTCTCTCTTTGTCAAAAAAAATACTAAGTTGTCTCTAGCTTAGCATTTTAACTTGTCAATAGCATGGATCCAACATTGAACATCTACGGTTGTCTCCAGTGCTGCCTTCAGACATTAGTTTCTATCTGATGTGTAAGCATGTTGAACAAGTCACTATACTTTGATTTGTTTAGTGTATGCAATTTTTGTTTCCAAGGAGCTTACACTAAAAAGACCTTCCAAAAGTTTGACCTATTTTAAATCTGGTATTAAATATTTAATATATGTACTACTATTGTTGGTGTTGGAGATACAGTGATCAACCAAAAGGCTATGACTGAAAGTACCAATGTACTCTTTGTGGACTTAGAAAATCTTCTCCAAATGTCTTCTGGACTGCCGCAGTCCGATGGCTTCTCCTTTTGCCCTCTATAGTGAACTTCTCATGCTTTGTCTCTGTGAGTAGGAGATAATAATATCATGAATGAAGATGTGATTGTTGTATGACCTTATTTTCAACATTTCGTTCACGTTTCATGGAATGCAATAGACCCATTGCTAAAACCACTTCCACGACTAGAATACAGTATCTACACCAGAAGTTATATTGAAATTGATTTCTTATTCAAGATGTTCTTTCACATCAACAAGTTGCATATTTCTGTCTGATGCGGTTGGTGTACTGTGCTTTCATTCACCTGGTGTGATCTGTAAGATGGTTAAATGCCTTGTTTTATTTTTGAGATGTTTTATTTGTAGAATGTCTTGTCTTGAGATCTAATTTTCCGTTTGAAAATACTGACAAGACTGTAATAAATACAGACAGTTTTTGCGACTGATTTACATTC</genome_strand>
        <mrna_strand>ATCGGCGACACTCTCTACAC-TGACCGGTGAATTCAGGTTTATTCCACCGGCGGCCATGACTCCGGTTTCATCCAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAATACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAATCAAGTGGTTGTGATTGCAACTGGTTACAATTCATGTGATTATGTATTTGATTCGTCTACTTCGTCAATGCAAAGGGCTGAGTGCTTGTTGGAGAAATTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGATTTTCGCTGCTTTCTGGTTCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAGCCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCGCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCATCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTTGCGACTGATTTACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2093" ref_strand="+" ref_description="SGN-M2093 T1556 [cos_markers]">
      <seq>tggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaagatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtgtggaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttacgggatctccaggcatgtataggcgttcttttcttgagaggaaggggcttacaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9240" stop="10856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9540" g_stop="9605" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10556" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="270" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-M2093" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9540" e_stop="9605"/>
          <exon e_start="10353" e_stop="10556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGG</genome_strand>
        <mrna_strand>TGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAGATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTGTGGAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTACGGGATCTCCAGGCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7947-2" ref_strand="+" ref_description="SGN-M7947-2 C2_At3g48190-2 [cosii_markers]">
      <seq>ttttttgaggttgtccaatatccattcaataaagaaggcaacacagctcagtaacacacagagcagtagcccaggagagaacagatccagcaattctactgaaaataaaaaagcgagcgaggcgagataaaacacagggttctcaacaacagtcgttagcctctcgcataaatatcctaattaattagattcacaatttcaatgattactaaggaactacaacttttattatcaactacgacgaagaagaaccaaccatggtgcttaccttttccaagaagcctttcacctcgctttccaacttggcttttatctcgggggaaatattatcaccagccttctcaagcattgtggtcatcgactccagattctgttttatcacaaccagatcaggtccctcgccatttgaaggtactgctccagaaagtaaagctgcgggctgagaagttgaaacatgacggagacgataactgacaagggaaggtccaaacgggtttctgctttgtaaactctgcaaggcttccatagcatcactatcctttgcaaagaccacctgggcagtagaatcattaaggtacaaagttttggattcctccaacggaccaaaactggcaaaagtagcacagatatactctttagaaggcactggtgaacccggcgtaaagtatagcagaagagtgttgtgatctccattaggattgggtatcccaatggcagcagatttagtagctcttcttcttttttgcatgggtttagcttgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="27061" stop="28421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27357" g_stop="28121" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-M7947-2" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7947-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27357" e_stop="28121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTG</genome_strand>
        <mrna_strand>TTTTTTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCATGGGTTTAGCTTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8744" ref_strand="+" ref_description="SGN-M8744 C2_At5g17990 [cosii_markers]">
      <seq>cttctgttaccctttgagccaaacttgtttccccatatttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgtcagacctatcagaaaaaagctgaaagtaaagacggtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccataaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagcctacgaggtggaggtccagagtacaatgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctctcctggtaagtggacgcgttgataatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79367" stop="83299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79667" g_stop="79976" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="617" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81096" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="701" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81757" g_stop="81945" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="890" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82146" g_stop="82236" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="981" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82385" g_stop="82444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1041" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82694" g_stop="82812" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1160" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82946" g_stop="82999" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1214" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-M8744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79667" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81096"/>
          <exon e_start="81757" e_stop="81945"/>
          <exon e_start="82146" e_stop="82236"/>
          <exon e_start="82385" e_stop="82444"/>
          <exon e_start="82694" e_stop="82812"/>
          <exon e_start="82946" e_stop="82999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTTACCCTTTGAG-CAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</genome_strand>
        <mrna_strand>CTTCTGTTACCCTTTGAGCCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8744-2" ref_strand="+" ref_description="SGN-M8744-2 C2_At5g17990-2 [cosii_markers]">
      <seq>cacggactcaacttgtttgcccatatttattgcacccaaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcacctgttttattcttcatctgccaccaaaaatggctctgtttcagtgccgaattccattttcagcactatctccatctctttcaccaagaactgaatttacaaaattgtttcttggaaatagtagtaacccatttgctaaaactacccaaaagaagttttcatctctttgttatgctttgaatgattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgactgaatctgaatcagaagattctcttgattttttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacgagttgaaggtttaggtgacgcagttgatattgttgggacaggaggagatggagcaaacacggtgaatatctcaacaggtgcttcaattcttgctgcagcttgtggtgcaaaagtggccaagcaagggaatagatccagttcatccgcttgtgggagcgccgatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccaatctaccatcctgcgatgaagattgtcagacctatcaggaaaaagctgaaagtaaagacagtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccacaaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagccttcgaggtggaggtccagagtacaacgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctctcctggtaagtggatgcgttgataatctggctgaaggagtggaattagctcgtgagacactactctctggcaaagcggtgaaaacacttgatctatggatagaagtttccaataaggtgaaggaagcagtctgtgtgaactgatggaagacgccaagctgaccatgttatattctcggggctcaacagcattccctactgagtaatcgttaaaagattcaaaatcaaagaaagactggataacacaactcaacttgcaattttggtttgtggaaagattagaataaggggttgaaaaaagaacaaaaaaaaatgtaactttggcttgtgaaatttgtatggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacaataaccaagcaaagcaagtggctccttgtttaaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79387" stop="84871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79678" g_stop="79976" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="613" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81096" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="697" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81757" g_stop="81945" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="886" r_length="189" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82146" g_stop="82236" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="887" r_stop="977" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82385" g_stop="82444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="978" r_stop="1037" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82694" g_stop="82812" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1156" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82946" g_stop="83080" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1157" r_stop="1291" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="83081" i_stop="83158" i_length="78">
            <donor d_prob="0.127" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="83159" g_stop="83468" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1292" r_stop="1596" r_length="305" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1610" polyA_stop="1640"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-M8744-2" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>1593</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8744-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79678" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81096"/>
          <exon e_start="81757" e_stop="81945"/>
          <exon e_start="82146" e_stop="82236"/>
          <exon e_start="82385" e_stop="82444"/>
          <exon e_start="82694" e_stop="82812"/>
          <exon e_start="82946" e_stop="83080"/>
          <exon e_start="83159" e_stop="83468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGCAAACTTGTTTCCCCATATTTATTGCACCC-AAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTG---CC----ATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGCAAAGCGGTGAAGACACTTGATCTATGGATAGAAGTTTCCAATGTAAGAAGAAATTCTCAGTAAGTTCAGGGTAGAAACTCCATCACTTCAACTCATGCTTATGTCTTTGCTTACTTGCAGACGGTGAAGGAAGCAGTCTGCATGAACTGATGGAATACGCCAAGCTGACCACGTTATATTCTCGGGGCTCAACAGCTTTCCCTGCTCTGAGTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTG-AAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTT</genome_strand>
        <mrna_strand>CACGGACTCAACTTGTTTGCCCATATTTATTGCACCCAAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCACCTGTTTTATTCTTCATCTGCCACCAAAAATGGCTCTGTTTCAGTGCCGAATTCCATTTTCAGCACTATCTCCATCTCTTTCACCAAGAACTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGCTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGTTATGCTTTGAATGATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACTGAATCTGAATCAGAAGATTCTCTTGATTTTTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACGAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGAGATGGAGCAAACACGGTGAATATCTCAACAGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTGGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCCGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCAATCTACCATCCTGCGATGAAGATTGTCAGACCTATCAGGAAAAAGCTGAAAGTAAAGACAGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCACAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTTCGAGGTGGAGGTCCAGAGTACAACGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGATGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGTGAGACACTACTCTCTGGCAAAGCGGTGAAAACACTTGATCTATGGATAGAAGTTTCCAAT..............................................................................AAGGTGAAGGAAGCAGTCTGTGTGAACTGATGGAAGACGCCAAGCTGACCATGTTATATTCTCGGGGCTCAACAGCATTCCCT--ACTGAGTAATCGTTAAAAGATTCAAAATCAAAG--AAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTGGAAAGATTAGAATAAGGGGTTGAAAAAAGAACAAAAAA-AAATGT-AACTTTGGCTTGTGAAATTTGTATGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACAATAACCAAGCAAAGCAAGTGGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1688" ref_strand="+" ref_description="SGN-M1688 T0969 [cos_markers]">
      <seq>gcaatgataaagcattgcagacaagttgaaggtttatgtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="80478" stop="81215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80778" g_stop="80915" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-M1688" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>138</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80778" e_stop="80915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTA</genome_strand>
        <mrna_strand>GCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTATGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2981" ref_strand="+" ref_description="SGN-M2981 cLET-5-M3 [est_clones]">
      <seq>taaaattcatctttaccaatataaatgcgaataatccagatgatgagtactcttttactgttcgtcgtgagaatgatgcacatactttgattgattgtgatccacagctgaatgacgcaaaagaactgattattgagttaaataaaagcaatggaatgttcaagtttgtcaggactatgagaaagaagtttctagaagctgtagcacgtggattaacatcgcaagatcaagatacttcaatggtctctatgcctacggtgatgtcgtccatctcaattattagtagagatgaatcttcaccccagaaagcggagcctcagtctgatgaatataagagagcttncaggaagcttgcccttggtaaaagggataggtcagccattctctctcctgtatctgcattatctcttcgcagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="126628" stop="127951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126928" g_stop="127014" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127093" g_stop="127215" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="210" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127216" i_stop="127443" i_length="228">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127444" g_stop="127651" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="418" r_length="208" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-M2981" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126928" e_stop="127014"/>
          <exon e_start="127093" e_stop="127215"/>
          <exon e_start="127444" e_stop="127651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTTGTAAGTTTGGTCTTGGTCAACTTTAATAAATTGAAGGTAGTTCTGAATGATAATTCTTTCCTTTGTTTGAATTGTTAGTGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGACTATGAGAAAGAAGTTTCTAGAAGCTGTAGCACGTGGTATGCTCTGTGTCTTTCCTGTTTCTGTTTATTTTTCTTTTGAAAATAAAATAAATCATGGCAATATATTGATAGTTGTACAAGACATTCAAAAGTAATTTGTATACTTTGCAGACTTACCAGTATGATTGGAGTGTTTTCACCTTTCATGCAAGTGCAGTTACTGTTTCTGATTTTGGATATGTTTGATAAGCTGCTCTTAAGGGGTTGTTATTTGGTTTCTACCAGGATTAACATCGCAAGATCAAGATACTTCAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATC</genome_strand>
        <mrna_strand>TAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT..............................................................................TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGACTATGAGAAAGAAGTTTCTAGAAGCTGTAGCACGTG....................................................................................................................................................................................................................................GATTAACATCGCAAGATCAAGATACTTCAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTNCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3428" PGL_stop="230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3428" e_stop="3342"/>
            <exon e_start="3238" e_stop="3141"/>
            <exon e_start="3031" e_stop="2788"/>
            <exon e_start="2433" e_stop="2387"/>
            <exon e_start="1656" e_stop="1619"/>
            <exon e_start="1543" e_stop="1498"/>
            <exon e_start="1336" e_stop="1283"/>
            <exon e_start="1178" e_stop="1110"/>
            <exon e_start="276" e_stop="230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.288" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.708" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.225" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3428" e_stop="3342" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.741">
            <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3238" e_stop="3141" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.956">
            <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3031" e_stop="2788" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.288">
            <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2433" e_stop="2387" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1656" e_stop="1619" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.708" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1543" e_stop="1498" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1336" e_stop="1283" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1178" e_stop="1110" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.757" acc_prob="0.225">
            <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="276" e_stop="230" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3428" stop="3342"/>
              <exon start="3238" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1656" stop="1619"/>
              <exon start="1543" stop="1498"/>
              <exon start="1336" stop="1283"/>
              <exon start="1178" stop="1110"/>
              <exon start="276" stop="251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6650-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3414" stop="3342"/>
              <exon start="3238" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1656" stop="1619"/>
              <exon start="1543" stop="1498"/>
              <exon start="1336" stop="1283"/>
              <exon start="1178" stop="1110"/>
              <exon start="276" stop="230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGCGACGCTCTCTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG : ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC : GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT : ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG : ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA : ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG : GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG : GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT : ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</gDNA_template>
            <first_frame> I  G  D  A  L  Y  T  *  P  V  N  *  G  L  F  H  R  R  P  *  H  R  F  H  Q  S  F  T  Q  :  T  M  *  A  Y  *  W  F  W  L  I  Q  I  P  T  S  G  A  Q  *  R  T  L  P  S  H  S  L  N  S  Y  H  T :   F  L  L  S  *  I  R  Y  F  Y  *  I  R  *  T  K  *  L  *  L  Q  L  G  T  I  H  V  I  M  Y  S  I  R  L  P  R  Q  C  K  E  L  S  V  C  W  R  N  W  R  I  L  W  I  K  M  S  P  *  V  K  K  T  L  L  M  E  L  G  F  R  C  F  L  V  H  F  L  W  L  C  A  :  T  F  N  G  Y  F  V  Q  G  L  F  I  H  N  L  G :   Y  C  V  C  M  D  L  Q  M  G  R  D   : N  M  L  Q  S  *  I  Q  F  S  Q  L  N  V  Q  W :   Y  P  L  I  H  V  *  *  D  L  S  I  L  L  F  F  S  R :   L  L  T  *  L  V  V  Y  I  *  N  P  K  Y  Q  M  D  C  F  N  I  S  L :   Q  F  L  R  L  I  Y  I  L  G  A  S  C  N  F  </first_frame>
            <second_frame>  S  A  T  L  S  T  P  D  R  *  I  K  V  Y  S  T  G  G  H  D  T  G  F  I  K  A  L  R  R :   R  C  E  P  I  D  G  S  G  *  Y  K  S  L  L  L  E  L  N  E  E  H  C  L  H  I  P  *  I  H  I  T   : R  S  C  F  L  E  F  D  T  F  T  E  S  D  E  P  S  S  C  D  C  N  W  V  Q  F  M  *  L  C  I  R  F  V  Y  L  V  N  A  K  S  *  V  F  V  G  E  T  G  G  F  C  G  *  R  *  V  L  E  S  R  R  L  C  *  W  S  W  V  F  A  A  F  W  C  T  F  Y  G  F  V  L :   H  S  T  G  I  S  F  R  A  S  S  S  T  T  S   : D  I  V  S  A  W  I  S  R  W  A  G  T  :  I  C  C  S  H  E  F  N  F  L  S  S  T  F  N   : G  T  H  *  F  M  C  N  R  I  S  A  F  C  F  S  S  A   : G  F  L  H  N  W  W  C  I  F  E  T  P  S  I  R  W  T  V  S  I  S  L   : Y  S  F  C  D  *  F  T  F  S  E  L  L  A  T  S </second_frame>
            <third_frame>   R  R  R  S  L  H  L  T  G  E  L  R  F  I  P  P  A  A  M  T  P  V  S  S  K  L  Y  A   : D  D  V  S  L  L  M  V  L  V  D  T  N  P  Y  F  W  S  S  M  K  N  T  A  F  T  F  P  K  F  I  S  H  :  V  L  A  F  L  N  S  I  L  L  L  N  Q  M  N  Q  V  V  V  I  A  T  G  Y  N  S  C  D  Y  V  F  D  S  S  T  S  S  M  Q  R  A  E  C  L  L  E  K  L  E  D  F  V  D  K  D  E  S  L  S  Q  E  D  S  V  D  G  V  G  F  S  L  L  S  G  A  L  S  M  A  L  C   : Y  I  Q  R  V  F  R  S  G  P  L  H  P  Q  P  R  :  I  L  C  L  H  G  S  P  D  G  P  G  Q :   Y  V  A  V  M  N  S  I  F  S  A  Q  R  S  M  :  V  P  I  D  S  C  V  I  G  S  Q  H  S  A  F  L  Q  Q  :  A  S  Y  I  T  G  G  V  Y  L  K  P  Q  V  S  D  G  L  F  Q  Y  L  S  :  T  V  F  A  T  D  L  H  S  R  S  F  L  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3426" stop="3342"/>
                    <exon start="3238" stop="3141"/>
                    <exon start="3031" stop="2788"/>
                    <exon start="2433" stop="2387"/>
                    <exon start="1656" stop="1619"/>
                    <exon start="1543" stop="1498"/>
                    <exon start="1336" stop="1283"/>
                    <exon start="1178" stop="1110"/>
                    <exon start="276" stop="232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRSLHLTGELRFIPPAAMTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9540" PGL_stop="10556"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9540" e_stop="9605"/>
            <exon e_start="10353" e_stop="10556"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.469" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9540" e_stop="9605" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.469">
            <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="10353" e_stop="10556" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9540" stop="9605"/>
              <exon start="10353" stop="10556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGG</gDNA_template>
            <first_frame> W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R </first_frame>
            <second_frame>  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K   </second_frame>
            <third_frame>   D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9542" stop="9605"/>
                    <exon start="10353" stop="10555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNMASQSDSPPNSVNENTQNPASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27357" PGL_stop="28121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27357" e_stop="28121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="27357" e_stop="28121" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27357" stop="28121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7947-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTG</gDNA_template>
            <first_frame> G  I  E  V  V  Q  Y  P  F  N  K  E  G  N  T  A  Q  *  H  T  E  Q  *  P  R  R  E  Q  I  Q  Q  F  Y  *  K  *  K  S  E  R  G  E  I  K  H  R  V  L  N  N  S  R  *  P  L  A  *  I  S  *  L  I  R  F  T  I  S  M  I  T  K  E  L  Q  L  L  L  S  T  T  T  K  K  N  Q  P  W  C  L  P  F  P  R  S  L  S  P  R  F  P  T  W  L  L  S  R  G  K  Y  Y  H  Q  P  S  Q  A  L  W  S  S  T  P  D  S  V  L  S  Q  P  D  Q  V  P  R  H  L  K  V  L  L  Q  K  V  K  L  R  A  E  K  L  K  H  D  G  D  D  N  *  Q  G  K  V  Q  T  G  F  C  F  V  N  S  A  R  L  P  *  H  H  Y  P  L  Q  R  P  P  G  Q  *  N  H  *  G  T  K  F  W  I  P  P  T  D  Q  N  W  Q  K  *  H  R  Y  T  L  *  K  A  L  V  N  P  A  *  S  I  A  E  E  C  C  D  L  H  *  D  W  V  S  Q  W  Q  Q  I  *  *  L  F  F  F  F  A  W  V  *  L  D  L </first_frame>
            <second_frame>  A  L  R  L  S  N  I  H  S  I  K  K  A  T  Q  L  S  N  T  Q  S  S  S  P  G  E  N  R  S  S  N  S  T  E  N  K  K  A  S  E  A  R  *  N  T  G  F  S  T  T  V  V  S  L  S  H  K  Y  P  N  *  L  D  S  Q  F  Q  *  L  L  R  N  Y  N  F  Y  Y  Q  L  R  R  R  R  T  N  H  G  A  Y  L  F  Q  E  A  F  H  L  A  F  Q  L  G  F  Y  L  G  G  N  I  I  T  S  L  L  K  H  C  G  H  R  L  Q  I  L  F  Y  H  N  Q  I  R  S  L  A  I  *  R  Y  C  S  R  K  *  S  C  G  L  R  S  *  N  M  T  E  T  I  T  D  K  G  R  S  K  R  V  S  A  L  *  T  L  Q  G  F  H  S  I  T  I  L  C  K  D  H  L  G  S  R  I  I  K  V  Q  S  F  G  F  L  Q  R  T  K  T  G  K  S  S  T  D  I  L  F  R  R  H  W  *  T  R  R  K  V  *  Q  K  S  V  V  I  S  I  R  I  G  Y  P  N  G  S  R  F  S  S  S  S  S  F  L  L  G  F  S  L  T   </second_frame>
            <third_frame>   H  *  G  C  P  I  S  I  Q  *  R  R  Q  H  S  S  V  T  H  R  A  V  A  Q  E  R  T  D  P  A  I  L  L  K  I  K  K  R  A  R  R  D  K  T  Q  G  S  Q  Q  Q  S  L  A  S  R  I  N  I  L  I  N  *  I  H  N  F  N  D  Y  *  G  T  T  T  F  I  I  N  Y  D  E  E  E  P  T  M  V  L  T  F  S  K  K  P  F  T  S  L  S  N  L  A  F  I  S  G  E  I  L  S  P  A  F  S  S  I  V  V  I  D  S  R  F  C  F  I  T  T  R  S  G  P  S  P  F  E  G  T  A  P  E  S  K  A  A  G  *  E  V  E  T  *  R  R  R  *  L  T  R  E  G  P  N  G  F  L  L  C  K  L  C  K  A  S  I  A  S  L  S  F  A  K  T  T  W  A  V  E  S  L  R  Y  K  V  L  D  S  S  N  G  P  K  L  A  K  V  A  Q  I  Y  S  L  E  G  T  G  E  P  G  V  K  Y  S  R  R  V  L  *  S  P  L  G  L  G  I  P  M  A  A  D  L  V  A  L  L  L  F  C  L  G  L  A  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27537" stop="27830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRFTISMITKELQLLLSTTTKKNQPWCLPFPRSLSPRFPTWLLSRGKYYHQPSQALWSSTPDSVLSQPDQVPRHLKVLLQKVKLRAEKLKHDGDDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27569" stop="27799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTTTFIINYDEEEPTMVLTFSKKPFTSLSNLAFISGEILSPAFSSIVVIDSRFCFITTRSGPSPFEGTAPESKAAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27827" stop="28042"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTREGPNGFLLCKLCKASIASLSFAKTTWAVESLRYKVLDSSNGPKLAKVAQIYSLEGTGEPGVKYSRRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27562" stop="27765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRNYNFYYQLRRRRTNHGAYLFQEAFHLAFQLGFYLGGNIITSLLKHCGHRLQILFYHNQIRSLAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="79667" PGL_stop="83468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79667" e_stop="79976"/>
            <exon e_start="80098" e_stop="80241"/>
            <exon e_start="80760" e_stop="80921"/>
            <exon e_start="81013" e_stop="81096"/>
            <exon e_start="81757" e_stop="81945"/>
            <exon e_start="82146" e_stop="82236"/>
            <exon e_start="82385" e_stop="82444"/>
            <exon e_start="82694" e_stop="82812"/>
            <exon e_start="82946" e_stop="83080"/>
            <exon e_start="83159" e_stop="83468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.127" acc_prob="0.983" e_score="0.978"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="79667" e_stop="79976" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80098" e_stop="80241" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.877">
            <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80760" e_stop="80921" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81013" e_stop="81096" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81757" e_stop="81945" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.975">
            <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82146" e_stop="82236" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82385" e_stop="82444" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.735">
            <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82694" e_stop="82812" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="82946" e_stop="83080" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.127" acc_prob="0.983">
            <gDNA_intron_boundary i_start="83081" i_stop="83158" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.923">
            <gDNA_exon_boundary e_start="83159" e_stop="83468" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79667" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81096"/>
              <exon start="81757" stop="81945"/>
              <exon start="82146" stop="82236"/>
              <exon start="82385" stop="82444"/>
              <exon start="82694" stop="82812"/>
              <exon start="82946" stop="82999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79678" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81096"/>
              <exon start="81757" stop="81945"/>
              <exon start="82146" stop="82236"/>
              <exon start="82385" stop="82444"/>
              <exon start="82694" stop="82812"/>
              <exon start="82946" stop="83080"/>
              <exon start="83159" stop="83468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8744-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80778" stop="80915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTGTTACCCTTTGAGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG : TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA : GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG : CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG : GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG : GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG : GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT : TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT : GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGCAAAGCGGTGAAGACACTTGATCTATGGATAGAAGTTTCCAAT : ACGGTGAAGGAAGCAGTCTGCATGAACTGATGGAATACGCCAAGCTGACCACGTTATATTCTCGGGGCTCAACAGCTTTCCCTGCTCTGAGTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTT</gDNA_template>
            <first_frame> L  L  L  P  F  E  Q  T  C  F  P  I  F  I  A  P  K  N  P  F  F  S  F  T  S  L  N  W  V  T  E  S  S  V  L  F  F  L  C  H  G  S  V  S  V  S  N  S  I  F  S  G  I  S  I  C  F  S  K  N  *  I  Y  K  I  V  S  W  K  *  *  *  P  I  C  *  N  Y  P  K  E  V  F  I  S  L  L  C  F  E  K  F  Q  *  A  F  I  H  I  H  I  *  *   : V  D  *  G  F  N  *  W  E  R  F  D  G  I  *  I  R  R  F  S  *  F  L  V  G  W  C  *  *  S  F  D  *  C  F  S  C  S  F  E  S  *  R  R  N  L  *  R   : S  S  G  I  G  K  G  N  D  K  A  L  Q  T  S  *  R  F  R  *  R  S  *  Y  C  W  D  R  R  G  W  S  K  H  G  E  Y  L  N  R  C  L  N  S  C  C  S  L  W  C  K  S  S  Q   : A  R  E  *  I  Q  F  I  R  L  W  E  R  R  C  I  G  R  T  R  C  C  H  *  A  G  P  *   : G  G  E  R  V  C  K  S  S  W  N  W  F  H  D  V  S  D  L  P  S  G  N  E  D  R  Q  T  Y  Q  K  K  A  E  S  K  D  G  V  Q  H  L  G  T  Y  V  E  P  S  K  S  A  V  C  C  S  R  S  L  Q  R  R  P   : G  P  *  N  G  *  S  I  A  K  I  W  H  E  K  S  I  G  C  S  L  R  R  P  R  *  D  E  S  S  W :   P  W  I  S  P  *  R  H  T  R  *  Y  *  E  V  L  L  *  S  I :   G  L  W  H  P  S  L  H  S  *  K  P  T  R  W  R  S  R  V  Q  C  R  D  A  Q  T  C  A  V  R  R  K  R  V  N  C  *  C  I   : C  T  K  C  I  S  C  S  P  G  K  W  T  R  *  *  S  G  *  R  S  G  I  S  S  R  D  T  T  L  W  Q  S  G  E  D  T  *  S  M  D  R  S  F  Q   : Y  G  E  G  S  S  L  H  E  L  M  E  Y  A  K  L  T  T  L  Y  S  R  G  S  T  A  F  P  A  L  S  N  G  *  K  I  Q  N  Q  R  K  R  L  D  N  T  T  Q  L  A  I  L  V  C  K  R  I  R  I  K  G  *  K  R  T  K  N  K  C  K  L  W  L  V  K  F  A  R  Q  L  *  I  S  V  E  S  I  V  C  N  T  Y  L  *  R  *  P  S  K  A  S  G  S   </first_frame>
            <second_frame>  F  C  Y  P  L  S  K  L  V  S  P  Y  L  L  H  P  K  I  P  S  S  A  S  L  H  *  I  G  *  L  N  H  L  F  Y  S  S  S  A  M  A  L  F  Q  C  R  I  P  F  S  A  V  S  P  S  V  S  P  R  I  E  F  T  K  L  F  L  G  N  S  S  N  P  F  V  K  T  T  Q  K  K  F  S  S  L  C  Y  A  L  K  N  S  N  K  H  S  S  I  S  T  F  S  E  :  L  I  E  A  L  I  S  G  K  D  L  T  E  S  E  S  E  D  S  L  D  F  L  L  D  G  A  D  E  A  L  I  S  A  F  L  V  L  L  R  A  K  G  E  T  F  E  E  :  V  V  G  L  A  R  A  M  I  K  H  C  R  Q  V  E  G  L  G  D  A  V  D  I  V  G  T  G  G  D  G  A  N  T  V  N  I  S  T  G  A  S  I  L  A  A  A  C  G  A  K  V  A  K  :  Q  G  N  R  S  S  S  S  A  C  G  S  A  D  V  L  E  E  L  G  V  A  I  E  L  D  P  E  :  G  V  K  E  C  V  N  Q  A  G  I  G  F  M  M  S  P  I  Y  H  P  A  M  K  I  V  R  P  I  R  K  K  L  K  V  K  T  V  F  N  I  L  G  P  M  L  N  P  A  R  V  P  F  A  V  V  G  V  Y  K  E  D  L  :  V  H  K  M  A  K  A  L  Q  R  F  G  M  K  R  A  L  V  V  H  S  E  G  L  D  E  M  S  P  L   : G  P  G  L  V  L  D  V  T  P  D  N  I  E  K  F  S  F  D  P   : L  D  F  G  I  P  R  C  T  L  E  S  L  R  G  G  G  P  E  Y  N  A  E  M  L  R  R  V  L  S  G  E  K  G  S  I  A  D  A  F  :  A  L  N  A  S  A  A  L  L  V  S  G  R  V  D  N  L  A  E  G  V  E  L  A  R  E  T  L  L  S  G  K  A  V  K  T  L  D  L  W  I  E  V  S  N  :  T  V  K  E  A  V  C  M  N  *  W  N  T  P  S  *  P  R  Y  I  L  G  A  Q  Q  L  S  L  L  *  V  M  V  K  R  F  K  I  K  E  K  D  W  I  T  Q  L  N  L  Q  F  W  F  V  K  G  L  E  *  R  V  E  R  E  Q  K  I  N  V  N  F  G  L  *  N  L  Q  G  N  C  R  F  L  W  K  A  L  F  V  I  L  T  C  D  D  N  Q  A  K  Q  V  A  P  </second_frame>
            <third_frame>   S  V  T  L  *  A  N  L  F  P  H  I  Y  C  T  Q  K  S  L  L  Q  L  H  F  I  K  L  G  N  *  I  I  C  F  I  L  P  L  P  W  L  C  F  S  V  E  F  H  F  Q  R  Y  L  H  L  F  L  Q  E  L  N  L  Q  N  C  F  L  E  I  V  V  T  H  L  L  K  L  P  K  R  S  F  H  L  F  A  M  L  *  K  I  P  I  S  I  H  P  Y  P  H  L  V  S :   *  L  R  L  *  L  V  G  K  I  *  R  N  L  N  Q  K  I  L  L  I  S  C  W  M  V  L  M  K  L  *  L  V  L  F  L  F  F  *  E  L  K  E  K  P  L  K  K :   *  W  D  W  Q  G  Q  *  *  S  I  A  D  K  L  K  V  *  V  T  Q  L  I  L  L  G  Q  E  G  M  E  Q  T  R  *  I  S  Q  Q  V  P  Q  F  L  L  Q  L  V  V  Q  K  *  P  S :   K  G  I  D  P  V  H  P  L  V  G  A  Q  M  Y  W  K  N  *  V  L  P  L  S  W  T  L  R :   G  *  K  S  V  *  I  K  L  E  L  V  S  *  C  L  R  S  T  I  R  Q  *  R  S  S  D  L  S  E  K  S  *  K  *  R  R  C  S  T  S  W  D  L  C  *  T  Q  Q  E  C  R  L  L  *  *  E  F  T  K  K  T  W :   S  I  K  W  L  K  H  C  K  D  L  A  *  K  E  H  W  L  F  T  Q  K  A  *  M  R  *  V  L  L  :  A  L  D  *  S  L  T  S  H  Q  I  I  L  R  S  S  P  L  I  H  :  W  T  L  A  S  L  V  A  L  L  K  A  Y  E  V  E  V  Q  S  T  M  P  R  C  S  D  V  C  C  Q  E  K  K  G  Q  L  L  M  H  L :   H  *  M  H  Q  L  L  S  W  *  V  D  A  L  I  I  W  L  K  E  W  N  *  L  A  R  H  Y  S  L  A  K  R  *  R  H  L  I  Y  G  *  K  F  P  I :   R  *  R  K  Q  S  A  *  T  D  G  I  R  Q  A  D  H  V  I  F  S  G  L  N  S  F  P  C  S  E  *  W  L  K  D  S  K  S  K  K  K  T  G  *  H  N  S  T  C  N  F  G  L  *  K  D  *  N  K  G  L  K  E  N  K  K  *  M  *  T  L  A  C  E  I  C  K  A  T  V  D  F  C  G  K  H  C  L  *  Y  L  L  V  T  I  T  K  Q  S  K  W  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79755" stop="79976"/>
                    <exon start="80098" stop="80241"/>
                    <exon start="80760" stop="80921"/>
                    <exon start="81013" stop="81096"/>
                    <exon start="81757" stop="81945"/>
                    <exon start="82146" stop="82236"/>
                    <exon start="82385" stop="82444"/>
                    <exon start="82694" stop="82812"/>
                    <exon start="82946" stop="83080"/>
                    <exon start="83159" stop="83188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNHLFYSSSAMALFQCRIPFSAVSPSVSPRIEFTKLFLGNSSNPFVKTTQKKFSSLCYALKNSNKHSSISTFSELIEALISGKDLTESESEDSLDFLLDGADEALISAFLVLLRAKGETFEEVVGLARAMIKHCRQVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEELGVAIELDPEGVKECVNQAGIGFMMSPIYHPAMKIVRPIRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDLVHKMAKALQRFGMKRALVVHSEGLDEMSPLGPGLVLDVTPDNIEKFSFDPLDFGIPRCTLESLRGGGPEYNAEMLRRVLSGEKGSIADAFALNASAALLVSGRVDNLAEGVELARETLLSGKAVKTLDLWIEVSNTVKEAVCMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="126928" PGL_stop="127651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126928" e_stop="127014"/>
            <exon e_start="127093" e_stop="127215"/>
            <exon e_start="127444" e_stop="127651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.927" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126928" e_stop="127014" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127093" e_stop="127215" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.927">
            <gDNA_intron_boundary i_start="127216" i_stop="127443" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="127444" e_stop="127651" e_length="208"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126928" stop="127014"/>
              <exon start="127093" stop="127215"/>
              <exon start="127444" stop="127651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT : TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGACTATGAGAAAGAAGTTTCTAGAAGCTGTAGCACGTG : GATTAACATCGCAAGATCAAGATACTTCAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATC</gDNA_template>
            <first_frame> *  N  S  S  L  P  I  *  M  R  I  I  Q  M  M  S  T  L  L  L  F  V  V  R  M  M  H  I  L  :  *  L  I  V  I  H  S  *  M  T  Q  K  N  *  L  L  S  *  I  K  A  M  E  C  S  S  L  S  G  L  *  E  R  S  F  *  K  L  *  H  V  :  D  *  H  R  K  I  K  I  L  Q  W  S  L  C  L  R  *  C  R  P  S  Q  L  L  V  E  M  N  L  H  P  R  K  R  S  L  S  L  M  N  I  R  E  L  P  G  S  L  P  L  V  K  G  I  G  Q  P  F  S  L  L  Y  L  H  Y  L  F  A  D  </first_frame>
            <second_frame>  K  I  H  L  Y  Q  Y  K  C  E  *  S  R  *  *  V  L  F  Y  C  S  S  *  E  *  C  T  Y  F :   D  *  L  *  S  T  A  E  *  R  K  R  T  D  Y  *  V  K  *  K  Q  W  N  V  Q  V  C  Q  D  Y  E  K  E  V  S  R  S  C  S  T  W :   I  N  I  A  R  S  R  Y  F  N  G  L  Y  A  Y  G  D  V  V  H  L  N  Y  *  *  R  *  I  F  T  P  E  S  G  A  S  V  *  *  I  *  E  S  F  Q  E  A  C  P  W  *  K  G  *  V  S  H  S  L  S  C  I  C  I  I  S  S  Q  I </second_frame>
            <third_frame>   K  F  I  F  T  N  I  N  A  N  N  P  D  D  E  Y  S  F  T  V  R  R  E  N  D  A  H  T   : L  I  D  C  D  P  Q  L  N  D  A  K  E  L  I  I  E  L  N  K  S  N  G  M  F  K  F  V  R  T  M  R  K  K  F  L  E  A  V  A  R   : G  L  T  S  Q  D  Q  D  T  S  M  V  S  M  P  T  V  M  S  S  I  S  I  I  S  R  D  E  S  S  P  Q  K  A  E  P  Q  S  D  E  Y  K  R  A  S  R  K  L  A  L  G  K  R  D  R  S  A  I  L  S  P  V  S  A  L  S  L  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126930" stop="127014"/>
                    <exon start="127093" stop="127215"/>
                    <exon start="127444" stop="127649"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFIFTNINANNPDDEYSFTVRRENDAHTLIDCDPQLNDAKELIIELNKSNGMFKFVRTMRKKFLEAVARGLTSQDQDTSMVSMPTVMSSISIISRDESSPQKAEPQSDEYKRASRKLALGKRDRSAILSPVSALSLRR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 17504 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2188 bytes was the average size of a spliced alignment
$ 10872 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2174 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:56:53
-->
