<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:37:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263039" ref_strand="+" ref_description="SGN-E263039 [cLEG-59-B7]">
      <seq>tacacctgaccggtgaattaaggtttattccaccggcggccatgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagtatcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagcttcttgcaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3713" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3413" g_stop="3342" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3238" g_stop="3141" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="170" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="414" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="461" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1656" g_stop="1619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="499" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1543" g_stop="1498" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="545" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1336" g_stop="1283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="599" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1178" g_stop="1110" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="668" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.225" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="276" g_stop="230" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="715" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E263039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3413" e_stop="3342"/>
          <exon e_start="3238" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1656" e_stop="1619"/>
          <exon e_start="1543" e_stop="1498"/>
          <exon e_start="1336" e_stop="1283"/>
          <exon e_start="1178" e_stop="1110"/>
          <exon e_start="276" e_stop="230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCTGTAAGTGTTATTAAAATTATTAATACTAAGTTGTCTCTCTTTGTCAAAAAAAATACTAAGTTGTCTCTAGCTTAGCATTTTAACTTGTCAATAGCATGGATCCAACATTGAACATCTACGGTTGTCTCCAGTGCTGCCTTCAGACATTAGTTTCTATCTGATGTGTAAGCATGTTGAACAAGTCACTATACTTTGATTTGTTTAGTGTATGCAATTTTTGTTTCCAAGGAGCTTACACTAAAAAGACCTTCCAAAAGTTTGACCTATTTTAAATCTGGTATTAAATATTTAATATATGTACTACTATTGTTGGTGTTGGAGATACAGTGATCAACCAAAAGGCTATGACTGAAAGTACCAATGTACTCTTTGTGGACTTAGAAAATCTTCTCCAAATGTCTTCTGGACTGCCGCAGTCCGATGGCTTCTCCTTTTGCCCTCTATAGTGAACTTCTCATGCTTTGTCTCTGTGAGTAGGAGATAATAATATCATGAATGAAGATGTGATTGTTGTATGACCTTATTTTCAACATTTCGTTCACGTTTCATGGAATGCAATAGACCCATTGCTAAAACCACTTCCACGACTAGAATACAGTATCTACACCAGAAGTTATATTGAAATTGATTTCTTATTCAAGATGTTCTTTCACATCAACAAGTTGCATATTTCTGTCTGATGCGGTTGGTGTACTGTGCTTTCATTCACCTGGTGTGATCTGTAAGATGGTTAAATGCCTTGTTTTATTTTTGAGATGTTTTATTTGTAGAATGTCTTGTCTTGAGATCTAATTTTCCGTTTGAAAATACTGACAAGACTGTAATAAATACAGACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</genome_strand>
        <mrna_strand>TACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281610" ref_strand="+" ref_description="SGN-E281610 [cLER-14-C19]">
      <seq>tcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagtatcagatggactgtttcaatatctctctacagtttttgcgactgatttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3466" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3166" g_stop="3141" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="270" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="317" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2386" i_stop="1327" i_length="1060">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1326" g_stop="1283" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="361" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1178" g_stop="1110" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="430" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.225" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="276" g_stop="253" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="454" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E281610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3166" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1326" e_stop="1283"/>
          <exon e_start="1178" e_stop="1110"/>
          <exon e_start="276" e_stop="253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCTGTAAGTGTTATTAAAATTATTAATACTAAGTTGTCTCTCTTTGTCAAAAAAAATACTAAGTTGTCTCTAGCTTAGCATTTTAACTTGTCAATAGCATGGATCCAACATTGAACATCTACGGTTGTCTCCAGTGCTGCCTTCAGACATTAGTTTCTATCTGATGTGTAAGCATGTTGAACAAGTCACTATACTTTGATTTGTTTAGTGTATGCAATTTTTGTTTCCAAGGAGCTTACACTAAAAAGACCTTCCAAAAGTTTGACCTATTTTAAATCTGGTATTAAATATTTAATATATGTACTACTATTGTTGGTGTTGGAGATACAGTGATCAACCAAAAGGCTATGACTGAAAGTACCAATGTACTCTTTGTGGACTTAGAAAATCTTCTCCAAATGTCTTCTGGACTGCCGCAGTCCGATGGCTTCTCCTTTTGCCCTCTATAGTGAACTTCTCATGCTTTGTCTCTGTGAGTAGGAGATAATAATATCATGAATGAAGATGTGATTGTTGTATGACCTTATTTTCAACATTTCGTTCACGTTTCATGGAATGCAATAGACCCATTGCTAAAACCACTTCCACGACTAGAATACAGTATCTACACCAGAAGTTATATTGAAATTGATTTCTTATTCAAGATGTTCTTTCACATCAACAAGTTGCATATTTCTGTCTGATGCGGTTGGTGTACTGTGCTTTCATTCACCTGGTGTGATCTGTAAGATGGTTAAATGCCTTGTTTTATTTTTGAGATGTTTTATTTGTAGAATGTCTTGTCTTGAGATCTAATTTTCCGTTTGAAAATACTGACAAGACTGTAATAAATACAGACAGTTTTTGCGACTGATTTACAT</genome_strand>
        <mrna_strand>TCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTTGCGACTGATTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551145" ref_strand="+" ref_description="SGN-E551145 [TUS-55-H6]">
      <seq>ctacacctgaccggtgaattaaggtttattccaccggcggccatgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3714" stop="863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3414" g_stop="3342" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3238" g_stop="3141" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="171" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="415" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1656" g_stop="1619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="500" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1543" g_stop="1498" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="546" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1336" g_stop="1283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="600" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1178" g_stop="1163" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="616" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E551145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3414" e_stop="3342"/>
          <exon e_start="3238" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1656" e_stop="1619"/>
          <exon e_start="1543" e_stop="1498"/>
          <exon e_start="1336" e_stop="1283"/>
          <exon e_start="1178" e_stop="1163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTG</genome_strand>
        <mrna_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688944" ref_strand="+" ref_description="SGN-E688944 [t3_tus_55_H06]">
      <seq>ctacacctgaccggtgaattaaggtttattccaccggcggccatgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3714" stop="863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3414" g_stop="3342" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3238" g_stop="3141" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="171" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="415" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1656" g_stop="1619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="500" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1543" g_stop="1498" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="546" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1336" g_stop="1283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="600" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1178" g_stop="1163" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="616" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E688944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3414" e_stop="3342"/>
          <exon e_start="3238" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1656" e_stop="1619"/>
          <exon e_start="1543" e_stop="1498"/>
          <exon e_start="1336" e_stop="1283"/>
          <exon e_start="1178" e_stop="1163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTG</genome_strand>
        <mrna_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717029" ref_strand="+" ref_description="SGN-E717029 [FB18CH10]">
      <seq>gtttgtcacggatgctgctgagctcaccaacatgtccagttcttgaaggtcttggaaagaagctagcttttgagatagctgttggtttaaacggccgtgtgtgggtaaatgctgagcaccaatcgtcaatcatccttgctgcgaatgcaataatgaactctgagtccttgacctcagtgcaacaaaagattatggtggagaagctgcttgacagagtaaattgaactggatttagcatttcgaccacatagcctctagcagccaaatgatgtgatggataatgtgattgtaaccagaccgcggaacataaatgttacacaagcttcttcctcatggacttttagcctgcggctttccagttcatcactcatgaaaccgtcctgcttgtttatgtgattcttgtgagagtatagagaaaagatgtaacattattagcagaattgattgtccatgcaaacattttgtccatggtgttgtatttattcttcaaatcaatcttctgtccctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="7905" stop="9133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8040" g_stop="8052" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8053" i_stop="8216" i_length="164">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8217" g_stop="8307" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="104" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8308" i_stop="8421" i_length="114">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8422" g_stop="8837" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="520" r_length="416" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E717029" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8040" e_stop="8052"/>
          <exon e_start="8217" e_stop="8307"/>
          <exon e_start="8422" e_stop="8837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTCACGGATGTAAGTTTCTATTTTGGCTTTCACTTGCAACAGTGAAATCTTTGGTTTAGATTTTACTGTAACCTTAACTTGCTCATCAGAATAGAAACAAGAAAAAGGGTTGAAGGTCTTGTTGCATGCTATTCCCTTAGCTACATGTTCATCTTTTTGTATTTTTTTCCTAGGCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGGGTATATATAAATCTGTTCATTCTCTATTTATTGTGGTTGATCCGTCCATCTCTTTCTAAGTCTCAAATACTTTTGCCTCTATTCTCAATTTAGATACTTGTTCTGCTGTAATAGGTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAACAGATTTA</genome_strand>
        <mrna_strand>GTTTGTCACGGAT....................................................................................................................................................................GCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGG..................................................................................................................GTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347532" ref_strand="+" ref_description="SGN-E347532 [cTOF-26-G17]">
      <seq>tcgagatgagcaaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcaacagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9047" stop="11981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9347" g_stop="9411" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10346" i_length="741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10347" g_stop="10588" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="385" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="619" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11654" g_stop="11681" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="647" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E347532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9347" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10347" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTT</genome_strand>
        <mrna_strand>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738271" ref_strand="+" ref_description="SGN-E738271 [LC13AB09]">
      <seq>cgatatgagcaaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9048" stop="12381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9348" g_stop="9411" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="378" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="427" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="612" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="802" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12018" g_stop="12081" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="866" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E738271" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9348" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAAT</genome_strand>
        <mrna_strand>CGATATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306959" ref_strand="+" ref_description="SGN-E306959 [cLEY-11-D1]">
      <seq>cgagatgagcaaaatccacttgtgggttctgacatactagcatcaatggtcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9048" stop="11175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9348" g_stop="9411" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="378" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="427" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="10875" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="457" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E306959" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9348" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="10875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTA</genome_strand>
        <mrna_strand>CGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTAGCATCAATGGTCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703637" ref_strand="+" ref_description="SGN-E703637 [FA22AC02]">
      <seq>gcaaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcaacagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacnagtgctatagagaaactggaagaattaagtactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9056" stop="12407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9356" g_stop="9411" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10346" i_length="741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10347" g_stop="10588" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="376" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="425" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="610" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="800" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="890" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E703637" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9356" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10347" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG</genome_strand>
        <mrna_strand>GCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACNAGTGCTATAGAGAAACTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212127" ref_strand="+" ref_description="SGN-E212127 [cLEC-75-H11]">
      <seq>aaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9058" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9358" g_stop="9411" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="368" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="417" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="10967" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E212127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9358" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="10967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACT</genome_strand>
        <mrna_strand>AAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210285" ref_strand="+" ref_description="SGN-E210285 [cLEC-35-O1]">
      <seq>aaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9058" stop="10827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9358" g_stop="9411" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10527" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="307" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E210285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9358" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10353" e_stop="10527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTC</genome_strand>
        <mrna_strand>AAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205331" ref_strand="+" ref_description="SGN-E205331 [cLEC-25-J11]">
      <seq>aatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggaggacatggcgtctcaatcagagtctccacccaactccgtaaacgagaatacccataatccagcaacagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9060" stop="11271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9360" g_stop="9411" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10346" i_length="741">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10347" g_stop="10588" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="372" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="421" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="10971" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="547" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E205331" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9360" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10347" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="10971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATG</genome_strand>
        <mrna_strand>AATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGAGGACATGGCGTCTCAATCAGAGTCTCCACCCAACTCCGTAAACGAGAATACCCATAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706314" ref_strand="+" ref_description="SGN-E706314 [FA29CE04]">
      <seq>ctttttcttgtactgttcttgaaattcagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatngtgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaaaggcaaagtactacttctggaagaatacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9199" stop="13658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9499" g_stop="9605" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="343" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="392" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="577" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="767" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="857" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13328" g_stop="13358" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="888" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E706314" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9499" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGT</genome_strand>
        <mrna_strand>CTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATNGTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706339" ref_strand="+" ref_description="SGN-E706339 [FA29CG06]">
      <seq>ctttttcttgtactgttcttgaaattcagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9199" stop="12350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9499" g_stop="9605" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="343" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="392" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="577" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="767" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12018" g_stop="12050" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="800" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E706339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9499" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGC</genome_strand>
        <mrna_strand>CTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708640" ref_strand="+" ref_description="SGN-E708640 [FA36BC10]">
      <seq>ccttttatatgagttggataacatggcgtctcaatcagattctcctcccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcaagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9228" stop="11041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="80" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="316" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="365" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10846" g_stop="10852" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="372" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E708640" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="10852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGAC</genome_strand>
        <mrna_strand>TTTTATATGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCTCCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCAAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367595" ref_strand="+" ref_description="SGN-E367595 [cLPT-7-P4]">
      <seq>tggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaagatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtgtggaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttacgggatctccaggcatgtataggcgttcttttcttgagaggaaggggcttacaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9240" stop="10856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9540" g_stop="9605" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10556" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="270" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E367595" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9540" e_stop="9605"/>
          <exon e_start="10353" e_stop="10556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGG</genome_strand>
        <mrna_strand>TGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAGATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTGTGGAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTACGGGATCTCCAGGCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257364" ref_strand="+" ref_description="SGN-E257364 [cLEG-45-M11]">
      <seq>gaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="10151" stop="13677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10451" g_stop="10588" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="187" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="372" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="562" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="652" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13328" g_stop="13377" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="702" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E257364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10451" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGA</genome_strand>
        <mrna_strand>GAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334015" ref_strand="+" ref_description="SGN-E334015 [cTOD-24-A10]">
      <seq>taagtttggccttttattcttttcttgagattgatactgtttggagcctatgcttgtcatgttgtcctgatatattgatgacagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaagtcttatatggagattatggctatggttcaaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="10462" stop="14006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10762" g_stop="11030" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="459" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="549" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="623" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="666" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="733" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E334015" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10762" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG</genome_strand>
        <mrna_strand>TAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCC-AAGTCTTATATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337374" ref_strand="+" ref_description="SGN-E337374 [cTOE-18-J18]">
      <seq>gccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgcttggaggtctactccctgcttcaagagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="10559" stop="11984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10859" g_stop="11030" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.362" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11654" g_stop="11684" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="204" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E337374" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10859" e_stop="11030"/>
          <exon e_start="11654" e_stop="11684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCT-GTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGA</genome_strand>
        <mrna_strand>GCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTTGGAGGTCTACTCCCTGCTTCAAGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701196" ref_strand="+" ref_description="SGN-E701196 [FA15BB11]">
      <seq>atcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcaccagttcaggaacgaccaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="10565" stop="15741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10865" g_stop="11030" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11654" g_stop="11717" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11718" i_stop="12017" i_length="300">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="319" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="393" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="436" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="504" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="549" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="615" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15228" g_stop="15441" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="829" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E701196" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10865" e_stop="11030"/>
          <exon e_start="11654" e_stop="11717"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
          <exon e_start="15228" e_stop="15441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAGGTTTGTCTTGTCCTTCTGTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTC</genome_strand>
        <mrna_strand>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATG............................................................................................................................................................................................................................................................................................................A-AAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211211" ref_strand="+" ref_description="SGN-E211211 [cLEC-70-J7]">
      <seq>ttgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="10678" stop="15075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10978" g_stop="11030" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="243" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="333" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="407" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="450" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="518" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="563" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14718" g_stop="14775" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="621" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E211211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10978" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAA</genome_strand>
        <mrna_strand>TTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204102" ref_strand="+" ref_description="SGN-E204102 [cLEC-27-C9]">
      <seq>agatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="11413" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11713" g_stop="11843" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="221" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="295" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="338" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="406" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="451" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="517" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E204102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11713" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</genome_strand>
        <mrna_strand>AGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245369" ref_strand="+" ref_description="SGN-E245369 [cLEF-53-D16]">
      <seq>tgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="11503" stop="13959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11803" g_stop="11843" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="131" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="205" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="248" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13635" g_stop="13659" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="273" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E245369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11803" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATC</genome_strand>
        <mrna_strand>TGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300722" ref_strand="+" ref_description="SGN-E300722 [cLEW-8-M10]">
      <seq>ttttgaggagctgacaagcctgctgaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="11728" stop="15720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12028" g_stop="12107" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="154" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="197" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="265" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="310" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="376" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15228" g_stop="15420" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="569" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E300722" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12028" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
          <exon e_start="15228" e_stop="15420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAGGTTTGTCTTGTCCTTCTGTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCAC</genome_strand>
        <mrna_strand>TTTTGAGGAGCTGACAAGCCTGCTGAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274115" ref_strand="+" ref_description="SGN-E274115 [cLEN-8-I21]">
      <seq>aactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="11753" stop="14933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12053" g_stop="12107" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="129" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="172" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="240" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="285" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14718" g_stop="14731" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="299" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E274115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12053" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCA</genome_strand>
        <mrna_strand>AACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700318" ref_strand="+" ref_description="SGN-E700318 [FA12DB06]">
      <seq>gaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="13076" stop="16176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13376" g_stop="13401" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="69" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="182" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="248" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15228" g_stop="15876" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="897" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E700318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13376" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
          <exon e_start="15228" e_stop="15876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAGGTTTGTCTTGTCCTTCTGTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTG</genome_strand>
        <mrna_strand>GAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699204" ref_strand="+" ref_description="SGN-E699204 [FA09AC02]">
      <seq>cgccttttctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcaccacttcaggaacgaccaattcagacatcatgggttcctccccagcctcctccagtcgcaatggcacacgcacctgcacccatccgccaacctaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="13190" stop="15819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13389" g_stop="13401" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="56" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="124" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="235" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15228" g_stop="15519" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="527" r_length="292" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E699204" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13389" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
          <exon e_start="15228" e_stop="15519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAGGTTTGTCTTGTCCTTCTGTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGT</genome_strand>
        <mrna_strand>CGCCTTTTCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCACTTCAGGAACGACCAATTCAGACATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCACACGCACCTGCACCCATCCGCCAACCTAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206672" ref_strand="+" ref_description="SGN-E206672 [cLEC-31-N10]">
      <seq>atggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="13208" stop="15088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13508" g_stop="13537" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="98" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="143" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="209" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E206672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13508" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</genome_strand>
        <mrna_strand>ATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249987" ref_strand="+" ref_description="SGN-E249987 [cLEG-4-O18]">
      <seq>gtttcttctaccaacaatgttgcaattgggtcaaatttgaaggttggattgggtcaatttaagaattgtctctgcatgattgacttttaaaaagaaccttagccacattctggcagctagacgtgaaaaatacgatttactaatcgaatctataatcctatttaagtacttcttttgatgaattaatcactgcaactaggatatttcaggaatattgtatggattaagttctatgaacacctgtcactttggtttggatacaagagttatggtttactagatagaactttctattcaatacattcggctttttttcttggattgtctggacgagaggtgggattggagacgggccatatgcagttcacatgtaagatttactcgaagtggcaatgataaccatttaataatctgtgcttgtgaacagccttgggaagttggccagagtcaaaataattccaatttccttcaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="14501" stop="15576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14801" g_stop="15276" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E249987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14801" e_stop="15276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</genome_strand>
        <mrna_strand>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369169" ref_strand="+" ref_description="SGN-E369169 [TUS-23-E18]">
      <seq>tacattcggctttttttcttggattgtctggacgagaggtgggattggagacgggccatatgcagttcacatgtaagatttactcgaagtggcaatgataaccatttaataatctgtgcttgtgaacagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="14799" stop="16072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15099" g_stop="15772" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E369169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15099" e_stop="15772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTA</genome_strand>
        <mrna_strand>TACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379122" ref_strand="+" ref_description="SGN-E379122 [TUS-1-K14](-)">
      <seq>aacaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacaaaaagtattctaataaatcaaagtgtggcctagtgtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15094" stop="16312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15394" g_stop="16012" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E379122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15394" e_stop="16012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAA</genome_strand>
        <mrna_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGT-GTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394085" ref_strand="+" ref_description="SGN-E394085 [TUS-14-O14]">
      <seq>aacaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacaaaaagtattctaataaatcaaagtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15094" stop="16298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15394" g_stop="15998" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E394085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15394" e_stop="15998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTG</genome_strand>
        <mrna_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394378" ref_strand="+" ref_description="SGN-E394378 [TUS-14-O12]">
      <seq>aactatactttggatctccagctgcaccatttcatgaacgacatattcataaatcatgggatcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcatcacctgacatttcttttaatttccttgaaaaaaaatgctgggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15094" stop="16040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15394" g_stop="15740" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E394378" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15394" e_stop="15740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATT</genome_strand>
        <mrna_strand>AACTATACTTTGGATCTCCAGCTGCACCATTTCATGAACGACATATTCATAAATCATGGGATCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCATCACCTGACATTTCTTTTAATTTCCTTGAAAAAAAATGCTGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378242" ref_strand="+" ref_description="SGN-E378242 [TUS-14-O14]">
      <seq>acaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacaaaaagtattctaataaatcaaagtgtggcctagtggtcaaatgtagtcggttgagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15095" stop="16330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15395" g_stop="16039" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E378242" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15395" e_stop="16039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</genome_strand>
        <mrna_strand>ACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378911" ref_strand="+" ref_description="SGN-E378911 [TUS-1-K14]">
      <seq>acaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacnaaaagtattctaataaatcaaagtgtggcctagtggtcaaatgtagtcggttgagaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15095" stop="16330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15395" g_stop="16037" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E378911" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15395" e_stop="16037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTC</genome_strand>
        <mrna_strand>ACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACNAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202220" ref_strand="+" ref_description="SGN-E202220 [cLEC-7-L8]">
      <seq>acaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccattcgcaatggcagatgcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacaacactctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15095" stop="16171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15395" g_stop="15871" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E202220" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15395" e_stop="15871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTAC-ACACTCTAAACT</genome_strand>
        <mrna_strand>ACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCATTCGCAATGGCAGATGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACAACACTCTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393935" ref_strand="+" ref_description="SGN-E393935 [TUS-14-O14](-)">
      <seq>gcatctcagaacgaacagttgactgatgatcagttgttagctcgctcctcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacaaaaagtattctaataaatcaaagtgtggcctagtggtcaaatgtagtcggttgagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15222" stop="16330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15522" g_stop="16039" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E393935" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15522" e_stop="16039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</genome_strand>
        <mrna_strand>GCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGCTCCTCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689621" ref_strand="+" ref_description="SGN-E689621 [LH_Ea01G03]">
      <seq>ccttagagtctccatctgatcaattgcataagaagagtaactctactggctcctcttctaagaggtggaagttacgtgacttcactcaccggagtaacagtgagggtaaagatactttcgtgtttttgacaactccgttcaaaaaaagagaagagaaaacagagactacgagaaccgactctggaataatcaccggaaaagttcccgccgttgaagattttccggcgttgcgttgttcgataagcggaaaagataaacgcaagtcatatttaccatacaggcaagatttattaagctttctgggtaatgtgaatgggctaaatcgaaattttcagcatttctgaggctaattacagtgaacggaatcttcagatagttaaacagttaatcagtgattaagcatgggtaaataatatctaatggattatgaatgaaatattgaattaatttaacaagttatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="21930" stop="20868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21634" g_stop="21163" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E689621" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21634" e_stop="21163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTATGTATATATTTAG</genome_strand>
        <mrna_strand>CCTTAGAGTCTCCATCTGATCAATTGCATAAGAAGAGTAACTCTACTGGCTCCTCTTCTAAGAGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACTTTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGACTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGTTCGATAAGCGGAAAAGATAAACGCAAGTCATATTTACCATACAGGCAAGATTTATTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTTCAGCATTTCTGAGGCTAATTACAGTGAACGGAATCTTCAGATAGTTAAACAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAAGTTATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691634" ref_strand="+" ref_description="SGN-E691634 [LH_Ea06J24]">
      <seq>ccattataaggtgagggnaaagatactttcgggtttttgacacctttgagggaaaaaagagaagagaaaacagagactacgagaaccgactctggaataatcaccggaaaagttcccgccgttgaagattttccggcgttgcgttgttcgataagcggaaaagataaacgcaagtcatatttaccatacaggcaagatttattaagctttctgggtaatgtgaatgggctaaatcgaaattttcagcatttctgaggctaattacagtgaacggaatcttcagatagttaaacagttaatcagtgattaagcatgggtaaataatatctaatggattatgaatgaaatattgaattaatttacaaaaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="21793" stop="20881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21546" g_stop="21174" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E691634" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21546" e_stop="21174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTATG</genome_strand>
        <mrna_strand>CCATTATAA-GGTGAGGGNAAAGATACTTTCGGGTTTTTGACACCTTTGAGGGAAAAAAGAGAAGAGAAAACAGAGACTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGTTCGATAAGCGGAAAAGATAAACGCAAGTCATATTTACCATACAGGCAAGATTTATTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTTCAGCATTTCTGAGGCTAATTACAGTGAACGGAATCTTCAGATAGTTAAACAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTACAAAAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693461" ref_strand="+" ref_description="SGN-E693461 [LH_Ea01G03](-)">
      <seq>agagtctccatctgatcaattgcataagaagagtaactccactggctcctcttctaagaggtggaagttacgtgacttcactcaccggagtaacagtgagggtaaagatactttcgtgtttttgacaactccgttcaaaaaaagagaagagaaaacagagactacgagaaccgactctggaataatcaccggaaaagttcccgccgttgaagattttccggcgttgcgttgttcgataagcggaaaagataaacgcaagtcatatttaccatccaggcaagatttattaagctttctgggtaatgtgaatgggctaaatcgaaattttcagcatttctgaggctaattacagtgaacggaatcttcagatagttaaccagttaatcagtgattaagcatgggtaaataatatctaatggattaagagtgaaatattgaattaatttaccaagttatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="21930" stop="20868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21630" g_stop="21175" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="473"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E693461" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21630" e_stop="21175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTAT</genome_strand>
        <mrna_strand>AGAGTCTCCATCTGATCAATTGCATAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGAGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACTTTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGACTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGTTCGATAAGCGGAAAAGATAAACGCAAGTCATATTTACCATCCAGGCAAGATTTATTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTTCAGCATTTCTGAGGCTAATTACAGTGAACGGAATCTTCAGATAGTTAACCAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTAAGAGTGAAATATTGAATTAATTTACCAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695474" ref_strand="+" ref_description="SGN-E695474 [LH_Ea06J24](-)">
      <seq>gtaacagtgagggtaaagatactttcgtgtttttgacaactccgttcaaaaaaagagaagagaaaacagagactacgagaaccgactctggaataatcaccggaaaagttcccgccgttgaagattttccggcgttgcgttgttcgataagcggaaaagataaacgcaagtcatatttaccatacaggcaagatttattaagctttctgggtaatgtgaatgggctaaatcgaaattttcagcatttctgaggctaattacagtgaacggaatcttcagttaaggggacagttaatcagtgattaagcatgggtaaattttcatgggtggattatgaatgaaatattgaattaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="21841" stop="20881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21541" g_stop="21180" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E695474" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21541" e_stop="21180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAG</genome_strand>
        <mrna_strand>GTAACAGTGAGGGTAAAGATACTTTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGACTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGTTCGATAAGCGGAAAAGATAAACGCAAGTCATATTTACCATACAGGCAAGATTTATTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTTCAGCATTTCTGAGGCTAATTACAGTGAACGGAATCTTCAGTTAAGGGGACAGTTAATCAGTGATTAAGCATGGGTAAATTTTCATGGGTGGATTATGAATGAAATATTGAATTAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317029" ref_strand="+" ref_description="SGN-E317029 [cTOA-27-K23]">
      <seq>ttttttgaggttgtccaatatccattcaataaagaaggcaacacagctcagtaacacacagagcagtagcccaggagagaacagatccagcaattctactgaaaataaaaaagcgagcgaggcgagataaaacacagggttctcaacaacagtcgttagcctctcgcataaatatcctaattaattagattcacaatttcaatgattactaaggaactacaacttttattatcaactacgacgaagaagaaccaaccatggtgcttaccttttccaagaagcctttcacctcgctttccaacttggcttttatctcgggggaaatattatcaccagccttctcaagcattgtggtcatcgactccagattctgttttatcacaaccagatcaggtccctcgccatttgaaggtactgctccagaaagtaaagctgcgggctgagaagttgaaacatgacggagacgataactgacaagggaaggtccaaacgggtttctgctttgtaaactctgcaaggcttccatagcatcactatcctttgcaaagaccacctgggcagtagaatcattaaggtacaaagttttggattcctccaacggaccaaaactggcaaaagtagcacagatatactctttagaaggcactggtgaacccggcgtaaagtatagcagaagagtgttgtgatctccattaggattgggtatcccaatggcagcagatttagtagctcttcttcttttttgcatgggtttagcttgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="27061" stop="28421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27357" g_stop="28121" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E317029" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27357" e_stop="28121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTG</genome_strand>
        <mrna_strand>TTTTTTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCATGGGTTTAGCTTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316927" ref_strand="+" ref_description="SGN-E316927 [cTOA-27-H21]">
      <seq>ttttttgaggttgtccaatatccattcaataaagaaggcaacacagctcagtaacacacagagcagtagcccaggagagaacagatccagcaattctactgaaaataaaaaagcgagcgaggcgagataaaacacagggttctcaacaacagtcgttagcctctcgcataaatatcctaattaattagattcacaatttcaatgattactaaggaactacaacttttattatcaactacgacgaagaagaaccaaccatggtgcttaccttttccaagaagcctttcacctcgctttccaacttggcttttatctcgggggaaatattatcaccagccttctcaagcattgtggtcatcgactccagattctgttttatcacaaccagatcaggtccctcgccatttgaaggtactgctccagaaagtaaagctgcgggctgagaagttgaaacatgacggagacgataactgacaagggaaggtccaaacgggtttctgctttgtaaactctgcaaggcttccatagcatcactatcctttgcaaagaccacctgggcagtagaatcattaaggtacaaagttttggattcctccaacggaccaaaactggcaaaagtagcacagatatactctttagaaggcactggtgaacccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="27061" stop="28315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27357" g_stop="28015" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E316927" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27357" e_stop="28015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGC</genome_strand>
        <mrna_strand>TTTTTTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711715" ref_strand="+" ref_description="SGN-E711715 [FB02DA12]">
      <seq>ccgcttagctctaccagatttgaatggacaggtcaccgatcccaatttgaagggaaaggaggtcacagaaatgagttctgtctcaggtcaagctaaacccaagcaaaaaagaagaagagctactaaatctgctgccattgggatacccaatcctaatggagatcacaacactcttctgctatactttacgccgggttcaccagtgccttctaaagagtatatctgtgctacttttgccagttttggtccgttggaggaatccaaaactttgtaccttaatgattctactgcccaggtggtctttgcaaaggatagtgatgctatggaagccttgcagagtttacaaagcagaaacccgtttggaccttcccttgtcagttatcgtctccgtcatgtttcaacttctcagcccgcagctttactttctggagcagtaccttcaaatggcgagggacctgatctggttgtgataaaacagaatctggagtcgatgaccacaatgcttgagaaggctggtgataatatttcccccgagataaaagccaagttggaaagcgaggtgaaaggcttcttggaaaaggtaagcaccatggttggttcttcttcgtcgtagttgataataaaagttgtagttccttagtaatcattgaaattgtgaatctaattaattaggatatttatgcgagaggctaacgactgttgttgagaaccctgtgttttatctcgcctcgctcgcttttttattttcagtagaattgctggatctgttctctcctgggctactgctctgtgtgttactgagctgtgttgccttcttttatgaatggatattggacaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="28502" stop="27064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28205" g_stop="27364" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E711715" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28205" e_stop="27364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAACAGAATCTGGAGTCGATGACCACAATGCTTGAGAAGGCTGGTGATAATATTTCCCCCGAGATAAAAGCCAAGTTGGAAAGCGAGGTGAAAGGCTTCTTGGAAAAGGTAAGCACCATGGTTGGTTCTTCTTCGTCGTAGTTGATAATAAAAGTTGTAGTTCCTTAGTAATCATTGAAATTGTGAATCTAATTAATTAGGATATTTATGCGAGAGGCTAACGACTGTTGTTGAGAACCCTGTGTTTTATCTCGCCTCGCTCGCTTTTTTATTTTCAGTAGAATTGCTGGATCTGTTCTCTCCTGGGCTACTGCTCTGTGTGTTACTGAGCTGTGTTGCCTTCTTTATTGAATGGATATTGGACAACCT</genome_strand>
        <mrna_strand>CCGCTT-AGCTCTACCAGATTTGAATGGACAGGTCACCGATCCCAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAACAGAATCTGGAGTCGATGACCACAATGCTTGAGAAGGCTGGTGATAATATTTCCCCCGAGATAAAAGCCAAGTTGGAAAGCGAGGTGAAAGGCTTCTTGGAAAAGGTAAGCACCATGGTTGGTTCTTCTTCGTCGTAGTTGATAATAAAAGTTGTAGTTCCTTAGTAATCATTGAAATTGTGAATCTAATTAATTAGGATATTTATGCGAGAGGCTAACGACTGTTGTTGAGAACCCTGTGTTTTATCTCGCCTCGCTCGCTTTTTTATTTTCAGTAGAATTGCTGGATCTGTTCTCTCCTGGGCTACTGCTCTGTGTGTTACTGAGCTGTGTTGCCTTCTTTTATGAATGGATATTGGACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699128" ref_strand="+" ref_description="SGN-E699128 [FA08DA07]">
      <seq>acttgaatggaaacaacgcgggcttgtcagttgaaaatatgcaggttataggtcctgctcctactcaaggtaaacttgagcctaagaggaggaggaggaagaaggaagagttggtttccgagaatctgccagatctgagcaaagggaacacccagttcattccaatgctgaaaagtgtggaagtcaccggctcgttacccttggaaggtggtcctcaaccagataacatgttgggggtacagggggcgtcttccctcccgaatgctgaactttttgctggacaaccaaatgccaatggaattcatgctgcaggtagctcattaccaaatatttcacagatcaccggtctggtttcgtctgcaaaaggagaaggcaagaaacggaaaaggaaggagaaagcattaattattcagaatacttcttcagctctaccagatttgaatggacaggtcaccgatccgaatttgaagggaaaggaggtcacagaaatgagttctgtctcaggtcaagctaaacccaagcaaaaaagaagaagagctactaaatctgctgccattgggatacctaatcctaatggagatcacaacactcttctgctatactttacgccgggttcaccagtgccttctaaagagtatatctgtgctacttttgccagttttggtccgttggaggaatccaaaactttgtaccttaatgattctactgcccaggtggtctttgcaaaggatagtgatgctatggaagccttgcagagtttacaaagcagaaacccgtttggaccttcccttgtcagttatcgtctccgtcatgtttcaacttctcagcccgcagctttactttctggagcagtaccttcaaatggcgagggacctgatctggttgtgataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="28922" stop="27430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28622" g_stop="27730" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="893" r_length="893" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E699128" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28622" e_stop="27730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAATGGAAACAACGCGGGCTTGTCAGTTGAAAATATGCAGGTTATAGGTCCTGCTCCTACTCAAGGTAAACTTGAGCCTAAGAGGAGGAGGAGGAAGAAGGAAGAGTTGGTTTCCGAGAATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAA</genome_strand>
        <mrna_strand>ACTTGAATGGAAACAACGCGGGCTTGTCAGTTGAAAATATGCAGGTTATAGGTCCTGCTCCTACTCAAGGTAAACTTGAGCCTAAGAGGAGGAGGAGGAAGAAGGAAGAGTTGGTTTCCGAGAATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCTAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249682" ref_strand="+" ref_description="SGN-E249682 [cLEF-56-N21]">
      <seq>ctgatggaagcagggactttgaaacatgaaactcaagaatcgggtgctgaatttaatgagtctcttgataatagggttgagaaaattggtgtggctgatgctgtggaagatatggacaggtcaaaggtgcacataaatgattctcctacaaagatagaagtttctggagatggtatttctctgacagtggatgtatttggtccagattgcacattttacatggaaactgacaaccctatgggtgtcaatggtaatgaagcagaaggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="30717" stop="29847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30417" g_stop="30147" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E249682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30417" e_stop="30147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</genome_strand>
        <mrna_strand>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="38976" stop="40182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39278" g_stop="39886" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="654" r_length="595" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39278" e_stop="39886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAAATTCTTAGTCTCAGTGTTTATCTTCTTCCCCCATCATTCTAAAGGTTTCAAAATTCTTAATATTTTGTTTCATTTAAAAATTTTTTCGGAGAGATGTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAAATAATAAAAAAGCTGAT-AAAAAAAAA-TTGTTGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGGAGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGGGCAGGGAAGTGGGTGTTTAAGTTTTA-TTTTTTTTTCATTTTTTTTTACTTTAAAATAATTTTTTAAATTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTTAATAGGTAGTACATCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGACCGCATATGACTTTGGCCTTTTTTTTCCCAT</genome_strand>
        <mrna_strand>ATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAA-TTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTAC----A-GGGAGGGG-GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAA--GGCAGGG-A---GGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAA-TTTTT-ATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGCTATTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="42202" stop="41368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41902" g_stop="41668" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41902" e_stop="41668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTC-TCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="42760" stop="41458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42460" g_stop="42375" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42374" i_stop="42301" i_length="74">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42300" g_stop="42098" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="289" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="41984" i_length="114">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41983" g_stop="41758" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42460" e_stop="42375"/>
          <exon e_start="42300" e_stop="42098"/>
          <exon e_start="41983" e_stop="41758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTAAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCGAGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCAC..........................................................................GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG..................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315257" ref_strand="+" ref_description="SGN-E315257 [cTOA-24-C6]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50699" stop="52006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50999" g_stop="51706" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E315257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50999" e_stop="51706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCT</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315184" ref_strand="+" ref_description="SGN-E315184 [cTOA-24-B6]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggactcgctacattcgagattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgcttgccctttgttcttgttgaagtgcattatggtggcaacttgtattctctttataacatggaatggatctagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50699" stop="51886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50999" g_stop="51586" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E315184" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50999" e_stop="51586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAG</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGACTCGCTACATTCGAGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGCTTGCCCTTTGTTCTTGTTGAAGTGCATTATGGTGGCAACTTGTATTCTCTTTATA-ACATGGAATGGATCTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315253" ref_strand="+" ref_description="SGN-E315253 [cTOA-24-A6]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttggcaccaaatagctttatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50699" stop="51767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50999" g_stop="51467" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E315253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50999" e_stop="51467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAG</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGGCACCAAATAGCTTTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317999" ref_strand="+" ref_description="SGN-E317999 [cTOA-30-N19]">
      <seq>catagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaatangcttgtttgacatatctctagacatatatagtattcattgctaactgattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50770" stop="52081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51070" g_stop="51781" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E317999" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51070" e_stop="51781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTT</genome_strand>
        <mrna_strand>CATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATANGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330226" ref_strand="+" ref_description="SGN-E330226 [cTOD-4-C20]">
      <seq>atagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgattgccctttgatcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50771" stop="51900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51071" g_stop="51600" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E330226" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51071" e_stop="51600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAA</genome_strand>
        <mrna_strand>ATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGATTGCCCTTTGATCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314210" ref_strand="+" ref_description="SGN-E314210 [cTOA-21-I21]">
      <seq>gaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50776" stop="51871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51076" g_stop="51571" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E314210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51076" e_stop="51571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACAT</genome_strand>
        <mrna_strand>GAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307999" ref_strand="+" ref_description="SGN-E307999 [cLEY-14-K19]">
      <seq>aagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50777" stop="51964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51077" g_stop="51664" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E307999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51077" e_stop="51664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTT</genome_strand>
        <mrna_strand>AAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740431" ref_strand="+" ref_description="SGN-E740431 [LC21BF06]">
      <seq>cttacttccatcagaaactcacccatctctcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgataaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccacaaaaaatcaactttttctataaatgggagtctcgctcaattcgtgattcttggtatttttgtcaccacataactttatcagataatattgaagttctgacttgtaactgaaaattaaatctctgcttgcactttgttcttgttgaagtgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50780" stop="51840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51080" g_stop="51540" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E740431" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51080" e_stop="51540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGG-GTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTT</genome_strand>
        <mrna_strand>CTTACTTCCATCAGAAACTCACCCATCTCTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGATAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACAAAAAATCAACTTTTTCTATAAATGGGAGTCTCGCTCAATTCGTGATTCTTGGTATTTTTGTCACCACATAACTTTATCAGATAATATTGAAGTTCTGACTTGTAACTGAAAATTAAATCTCTGCTTGCACTTTGTTCTTGTTGAAGTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329875" ref_strand="+" ref_description="SGN-E329875 [cTOD-3-H16]">
      <seq>cttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaataggcttgtttgacatatctctagacatatatagtattcattgctaactgattcttttgttctatactaacttgtattctttgtaaatctgttaatatgtagagttagatatatataacatcttatttttatggaccttaatgaaggtcagtatacagttaaattaaatgaatcagccaataatctgttttatccaaaacactctagtcatggtcaagtaagtgttgttgtcttcctgcccaaagttttttttcctttgcctatgcaagtctagttgagtttgatattggcctctcgagtcctttcgattctgtgttagtttgttgtcctttgagttttcttatctgtcaaaacgaaacaaaaaaagaacaaaatttccacccttcatttcgaacaaattttgagtgatcatggaagaaacatttgttcccctacgtggaatcaagaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="51287" stop="52477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51587" g_stop="52177" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E329875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51587" e_stop="52177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</genome_strand>
        <mrna_strand>CTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331489" ref_strand="+" ref_description="SGN-E331489 [cTOD-9-O11]">
      <seq>ttaattcgagatctttgtagatggagtacttcatttccggtcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaataggcttgtttgacatatctctagacatatatagtattcattgctaactgattcttttgttctatactaacttgtattctttgtaaatctgttaatatgtagagttagatatatataacatcttatttttatggaccttaatgaaggtcagtatacagttaaattaaatgaatcagccaataatctgttttatccaaaacactctagtcatggtcaagtaagtgttgttgtcttcctgcccaaagttttttttcctttgcctatgcaagtctagttgagtttgatattggcctctcgagtcctttcgattctgtgttagtttgttgtcctttgagttttcttatctgtcaaaacgaaacaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="51304" stop="52391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51604" g_stop="52091" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E331489" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51604" e_stop="52091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAG</genome_strand>
        <mrna_strand>TTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCGGTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687911" ref_strand="+" ref_description="SGN-E687911 [T3_tus_81_J19]">
      <seq>cttacataccagcacgtgatgttccacaagggataccacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacggttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcgtttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacagaaagagttcaatctaaagaaaccttcctcatatcattacgacctccttcttttgggcttcttggtcattatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcctcaacagcgaaaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaacgagatgcagactccccttgtgtatcaaactccttctggcctgggattgaaagagctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="53589" stop="55546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53889" g_stop="53989" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53990" i_stop="54109" i_length="120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54110" g_stop="54283" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="275" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54284" i_stop="54367" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54368" g_stop="54463" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54464" i_stop="54764" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54765" g_stop="54902" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="509" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54903" i_stop="54978" i_length="76">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54979" g_stop="55246" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="777" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E687911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53889" e_stop="53989"/>
          <exon e_start="54110" e_stop="54283"/>
          <exon e_start="54368" e_stop="54463"/>
          <exon e_start="54765" e_stop="54902"/>
          <exon e_start="54979" e_stop="55246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATC</genome_strand>
        <mrna_strand>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328191" ref_strand="+" ref_description="SGN-E328191 [cTOC-21-C24]">
      <seq>ttacataccagcacgtgatgttccacaagggataccacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacggttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcgtttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacagaaagagttcaatctaaagaaaccttcctcatatcattacgacctccttcttttgggcttcttggtcattatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcctcaacagcgaaaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaacgagatgcagactccccttgtgtatcaaactccttctggcctgngattgaaagagctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="53590" stop="55524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53890" g_stop="53989" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53990" i_stop="54109" i_length="120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54110" g_stop="54283" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="274" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54284" i_stop="54367" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54368" g_stop="54463" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="370" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54464" i_stop="54764" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54765" g_stop="54902" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="508" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54903" i_stop="54978" i_length="76">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54979" g_stop="55224" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="754" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E328191" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53890" e_stop="53989"/>
          <exon e_start="54110" e_stop="54283"/>
          <exon e_start="54368" e_stop="54463"/>
          <exon e_start="54765" e_stop="54902"/>
          <exon e_start="54979" e_stop="55224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCA</genome_strand>
        <mrna_strand>TTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................NGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704853" ref_strand="+" ref_description="SGN-E704853 [FA25BH01]">
      <seq>gctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatcagttttgggagaggatattattgcttttcactgcaccaagtagaagatacaaggtcttggaagataatcatgcaacatttgtcgagacagtacctttcaagacaattgcctggttcaccttgtttcagacattttatttgctcctttgtttcggcatcacatggataccaatagctggtgttcttttccctttgttgatcatgcttctagtcccagtgcgccagtatttgcttcccaagttcttcaaaggagcacatttacaagatctagacgctgcagaatatgaagaagcccctgcaatagcatacaacatgtcctatggagatcaagatcctcagggaagaccagcctgcattgatagtggtgaggttcttgatgatatgatcacaagaagccgtggggagattaggcgttcatgcagcccaagagtaactagttcaactcctacctctcttgatgaaatcaagtcaacacacagcccacagttatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagattcaatggcaagggacttgaaataaacaaactccccgccctcagccatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="54690" stop="56702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54990" g_stop="55298" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55299" i_stop="55644" i_length="346">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55645" g_stop="55915" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="580" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55916" i_stop="56126" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56127" g_stop="56402" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="855" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E704853" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54990" e_stop="55298"/>
          <exon e_start="55645" e_stop="55915"/>
          <exon e_start="56127" e_stop="56402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAAGTAAGTCACTGCCCAATGCTCCGATCATATCTCAGTCCCTACTCTACTTCCCATCTATTTTATTCTAATATTGTTTCGTAAGTTACAAGTGTGCCTGTCAGATCACATCCCAGAGAGAGGTCTAAAGTAATTAAGACTGATTAGAATCTTTAAAAAAGAGATGACTTCTTAAGTGAACTAAAAACTTTCTTTTCTGAAAGACCTTAAAGAGTTAGAATCAATCCTCATTTTCACCATAACCTCTTACAGTTACCCACGAGGTTCTTACATTATACAAATAGAATGTAGTCGGTTTTGTCTCTGATATCGCTTCTGCTATACCTTTCCTAATCTGCACATTTGTCAGGGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAA</genome_strand>
        <mrna_strand>GCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA..........................................................................................................................................................................................................................................................................................................................................................GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA...................................................................................................................................................................................................................GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAAT-AAACAAACTCCCCGCCCTCAGCCATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703113" ref_strand="+" ref_description="SGN-E703113 [FA20CD05]">
      <seq>tcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatcagttttgggagaggatattattgcttttcactgcaccaagtagaagatacaaggtcttggaagataatcatgcaacatttgtcgagacagtacctttcaagacaattgcctggttcaccttgtttcagacattttatttgctcctttgtttcggcatcacatggataccaatagctggtgttcttttccctttgttgatcatgcttctagtcccagtgcgccagtatttgcttcccaagttcttcaaaggagcacatttacaagatctagacgctgcagaatatgaagaagcccctgcaatagcatacaacatgtcctatggagatcaagatcctcagggaagaccagcctgcattgatagtggtgaggttcttgatgatatgatcacaagaagccgtggggagattaggcgttcatgcagcccaagagtaactagttcaactcctacctctcttgatgaaatcaagtcaacacacagcccacagttatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagattcaatggcaagggacttgaaataaaacaaactcccagccctcagccatctaaacttggtcaaaatgatcgcggtccgtcttccatctagtatcaacaaatattttttgtgaaattagagtctctagttgttctcgagaggtcttgtctaagtcttaagtatgtgattaatcttttcctaggcatctgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="54788" stop="56841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55088" g_stop="55298" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55299" i_stop="55644" i_length="346">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55645" g_stop="55915" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="482" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55916" i_stop="56126" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56127" g_stop="56541" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="897" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E703113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55088" e_stop="55298"/>
          <exon e_start="55645" e_stop="55915"/>
          <exon e_start="56127" e_stop="56541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAAGTAAGTCACTGCCCAATGCTCCGATCATATCTCAGTCCCTACTCTACTTCCCATCTATTTTATTCTAATATTGTTTCGTAAGTTACAAGTGTGCCTGTCAGATCACATCCCAGAGAGAGGTCTAAAGTAATTAAGACTGATTAGAATCTTTAAAAAAGAGATGACTTCTTAAGTGAACTAAAAACTTTCTTTTCTGAAAGACCTTAAAGAGTTAGAATCAATCCTCATTTTCACCATAACCTCTTACAGTTACCCACGAGGTTCTTACATTATACAAATAGAATGTAGTCGGTTTTGTCTCTGATATCGCTTCTGCTATACCTTTCCTAATCTGCACATTTGTCAGGGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</genome_strand>
        <mrna_strand>TCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA..........................................................................................................................................................................................................................................................................................................................................................GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA...................................................................................................................................................................................................................GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540892" ref_strand="-" ref_description="SGN-E540892 [TUS-61-G12](-)">
      <seq>gggcccccctcgagactagttctctcgtctcattgtgcaaagaaaaaacaggaaaaacaaaaacatcgaagaatttagtttaagtgaatgaggccacaaatagtaatatttggagactccattactcaacaatcctttaagttaggtggttggggtgctgctcttgctgatacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccattgaacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttattgctgataactccaccaccaattgatgaagcatgacggcttgaatatgcaaggtcccagtatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="59906" stop="64667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60214" g_stop="60373" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="186" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60459" g_stop="60536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="264" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61439" g_stop="61579" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="405" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63209" g_stop="63285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="482" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64182" g_stop="64346" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="647" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64606" g_stop="64625" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="667" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E540892" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60214" e_stop="60373"/>
          <exon e_start="60459" e_stop="60536"/>
          <exon e_start="61439" e_stop="61579"/>
          <exon e_start="63209" e_stop="63285"/>
          <exon e_start="64182" e_stop="64346"/>
          <exon e_start="64606" e_stop="64625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACAC</genome_strand>
        <mrna_strand>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCATGACGGCTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547201" ref_strand="+" ref_description="SGN-E547201 [TUS-70-P9]">
      <seq>cagatagtaatatttggagactccattactcaacaatccttcaagttaggtggttggggtgctgctcttgctgacacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccattggacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttgttgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaataatcgatgggaaacaacccgagaaggccttccagctacaatgccctgctacctaaccgtatattctatccttaatatattgatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="59984" stop="65113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60284" g_stop="60373" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60459" g_stop="60536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="168" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61439" g_stop="61579" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="309" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63209" g_stop="63285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="386" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64182" g_stop="64346" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="551" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64606" g_stop="64813" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="759" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E547201" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60284" e_stop="60373"/>
          <exon e_start="60459" e_stop="60536"/>
          <exon e_start="61439" e_stop="61579"/>
          <exon e_start="63209" e_stop="63285"/>
          <exon e_start="64182" e_stop="64346"/>
          <exon e_start="64606" e_stop="64813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAA</genome_strand>
        <mrna_strand>CAGATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTCAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGACACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGGAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCTGCTACCTAACCGTATATTCTATCCTTAATATATTGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360420" ref_strand="+" ref_description="SGN-E360420 [cLPP-8-P8]">
      <seq>agatagtaatatttggagactccattactcaacaatccttcaagttaagtggttggggtgctgctcttgctgacacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccataggacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataacgaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcagtgctgttgttgctgataactccaccaccaattgatgaagcatgacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtatccggagagtatgcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="59987" stop="64552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60285" g_stop="60373" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60459" g_stop="60536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="167" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61439" g_stop="61579" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="308" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63209" g_stop="63285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="385" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64182" g_stop="64252" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="456" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E360420" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60285" e_stop="60373"/>
          <exon e_start="60459" e_stop="60536"/>
          <exon e_start="61439" e_stop="61579"/>
          <exon e_start="63209" e_stop="63285"/>
          <exon e_start="64182" e_stop="64252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAAC</genome_strand>
        <mrna_strand>AGATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTCAAGTTAAGTGGTTGGGGTGCTGCTCTTGCTGACACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAACGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCAGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCATGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTATCCGGAGAGTATGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547200" ref_strand="+" ref_description="SGN-E547200 [TUS-70-P9](-)">
      <seq>gccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttgttgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaataatcgatgggaaacaacccgagaaggccttccagctacaatgccctgctacctaaccgtatattctatccttaatatattgatgtgaaaacagcaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagacaccttcactagcaatagattgtagacaaatgacagttgaatcatcaaaagaatgcctttcagattgaaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="61181" stop="71036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61481" g_stop="61579" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63209" g_stop="63285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="176" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64182" g_stop="64346" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="341" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64606" g_stop="64946" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="681" r_length="340" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="728"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E547200" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61481" e_stop="61579"/>
          <exon e_start="63209" e_stop="63285"/>
          <exon e_start="64182" e_stop="64346"/>
          <exon e_start="64606" e_stop="64946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGA</genome_strand>
        <mrna_strand>GCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGGAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCTGCTACCTAACCGTATATTCTATCCTTAATATATTGATGTGAAAACAGC-AAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGACACCTTCACTAGCAATAGATTGTAGACAAATGACAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541374" ref_strand="+" ref_description="SGN-E541374 [TUS-62-C3]">
      <seq>gacgtgcagattctggcattctgcctaatttgttgttcatactcttgctaaaatggtcgatttctagcgtaagtgagtgacttcacttaaaacccaaattatttgcaaaggaaataaaagatcattcagatttgcaggatatctaactttaccgactattcattaccacaaataatgaaaaaattacaatgcaggaaaatgtgaatgttaaattggcataagcaggtatgttaccagtttcaaaaaaaaattggcataagcaggctgagtatttcctactttttcttttcaagacttccattccagttttacttttggacgtgcttgttcagaagatataaaagacgtaaattcctagaacatattcatttcccaagtatatagtgatcttgatacaacctgctgacgagttttatgtagtttgatgttcactcttctagtaatatctatcatcttatgacaaatgaaatcaatcccatccaattgctcaattcctgagttgtttagagtagaacaggatacactaggcccttgtcttctattatgctatatatatgttaataaatctgggttgagctctgctctcttttgtatatctcattcattttgtcctaacacagaaatgctccccatcggtgctgttattgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccagtatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="62289" stop="64583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62589" g_stop="63285" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64182" g_stop="64283" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="799" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E541374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62589" e_stop="63285"/>
          <exon e_start="64182" e_stop="64283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</genome_strand>
        <mrna_strand>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295947" ref_strand="+" ref_description="SGN-E295947 [cLET-27-P17]">
      <seq>acgtgcagattctggcattctgcctaatttgttgttcatactcttgctaaaatggtcgatttctagcgtaagtgagtgacttcacttaaaacccaaattatttgcaaaggaaataaaagatcattcagatttgcaggatatctaactttaccgactattcattaccacaaataatgaaaaaattacaatgcaggaaaatgtgaatgttaaattggcataagcaggtatgttaccagtttcaaaaaaaaattggcataagcaggctgagtatttcctactttttcttttcaagacttccattccagttttacttttggacgtgcttgttcagaagatataaaagacgtaaattcctagaacatattcatttcccaagtatatagtgatcttgatacaacctgctgacgagttttatgtagtttgatgttcactcttctagtaatatctatcatcttatgacaaatgaaatcaatcccatccaattgctcaattcctgagttgtttagagtagaacaggatacactaggcccttgtcttctattatgctatatatatggtaataaatctgggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="62290" stop="63463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62590" g_stop="63163" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E295947" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62590" e_stop="63163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGA</genome_strand>
        <mrna_strand>ACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGGTAATAAATCTGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541371" ref_strand="+" ref_description="SGN-E541371 [TUS-62-C3](-)">
      <seq>acaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacnnggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttnnccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="63922" stop="65296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64222" g_stop="64346" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64606" g_stop="64990" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="514" r_length="389" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E541371" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64222" e_stop="64346"/>
          <exon e_start="64606" e_stop="64990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGAC--GGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTT--CCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAG</genome_strand>
        <mrna_strand>ACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACNNGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTNNCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715067" ref_strand="+" ref_description="SGN-E715067 [FB13BA01]">
      <seq>gcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagatttgattttagtacctaaaaacctttaattgccttgatgaacataaaatgtgtgatgttttggattgtgtacacaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="63946" stop="71023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64246" g_stop="64346" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64606" g_stop="65067" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="563" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65068" i_stop="66362" i_length="1295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66363" g_stop="66386" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="587" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E715067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64246" e_stop="64346"/>
          <exon e_start="64606" e_stop="65067"/>
          <exon e_start="66363" e_stop="66386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTTATGCCTTCAATAGTGTCAACAGATTCGAAATGCTCAGCTAATGTTTTGTAGTAAAAAAATTGCTTTTACTACCAAAAGTGAGGTGAAAGATTGTAAGAGTTGTACATGTCCTTTCATCTTTTTCTCTCCTATGATGAAAAAAAAATCAGCCTTAATATCAACTGAGTGTGCTTGCCAATATTGTCACACCCCATTTTACGTCGGTTGTTCATCCGGTGTTTAATATCAATATTGGAATCTGACTAAATTCGAATTCGCTCTGGAAAATTCTACATTAGGGCAGGTGTTTTATCTTTTGATTTTCTAATTGAATGTCTGATATCCACATTGAGGGATGTAACAAGTATCACCCTTTTTTGATAGTTTTTTCATAGTAATGTGAGAGTTGATATCATATCGCTCACTTAATATAGTTATCTTCTAATAAAATTTGACCAATAGGGCTTTAAATTATTTTTATTTTTATTTCAAATAATAAGAAAAAATTACTACAGGTAGCTGCTGGATTAATTCATTATAATGTAATCTATGATAATTTTCTTACTATTAATAACACTTAAATGTCTTTTTTTTAATAACACTTTAATGTGATAGGTATTAATTTCAGAATTTACTTCTGCGCAAAAAGCCTATTTGTAGGTACTAAGAAAAACATTCTAATTGTCCAATTAAATGGTCAACGTATTTATTGGTAGACTATAATGGTAAAAAAAATCTTTATTACATTTAAAGACTATAAAAATATAATACTAAACTAAAACACGAAACATGTTTCTTTTTTTACCAATGGTAAATTTATCTTTTCTATAAATTAAAATGGGTTTTCAACATAAATTCTCACATATCACTACATCAATATTTTGACCAAAAAAAAAATCCATTTTCAAAAAACTTGATCATATTATTGTATTTTAAATATATAGAAAAACATCTGGTCATATTTAATTAATGCAAAGGGCCAAAACTAAAATTGAATTGATTTTGAAAATATATTTAGGAAAATTGTTTTTAATGAACACTTATCTCAAAAGAAACTTTATTATCCTGAGTCAAAAATTTATTTAATTGCAGTCAAGTTTCATTACATTCATTTACACTAAATATAACAAGGAATTGCTACAATTGACTACTGTTTTAATTGAAGAAATGTTATTGACTTATTCTTCCATATATAAATCAAATTTCATATATTAAATTCGCCACTAAATAAAATTAACAACGAATTTTATTATTTAACTATTAAATTTATCAATTGGTAATTTCTATCTTTTTAAATACTGATTTATTCATGAATGGAAAAGAAAAATGAATAAAA</genome_strand>
        <mrna_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714356" ref_strand="+" ref_description="SGN-E714356 [FB11AH08]">
      <seq>gcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagatttgattttagtacctaaaaacctttaattgccttgatgaacataaaatgtgtgatgttttggattgtgtacacnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="63946" stop="71023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64246" g_stop="64346" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64606" g_stop="65063" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="559" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65064" i_stop="65803" i_length="740">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65804" g_stop="65831" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="587" r_length="28" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E714356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64246" e_stop="64346"/>
          <exon e_start="64606" e_stop="65063"/>
          <exon e_start="65804" e_stop="65831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTTATGCCTTCAATAGTGTCAACAGATTCGAAATGCTCAGCTAATGTTTTGTAGTAAAAAAATTGCTTTTACTACCAAAAGTGAGGTGAAAGATTGTAAGAGTTGTACATGTCCTTTCATCTTTTTCTCTCCTATGATGAAAAAAAAATCAGCCTTAATATCAACTGAGTGTGCTTGCCAATATTGTCACACCCCATTTTACGTCGGTTGTTCATCCGGTGTTTAATATCAATATTGGAATCTGACTAAATTCGAATTCGCTCTGGAAAATTCTACATTAGGGCAGGTGTTTTATCTTTTGATTTTCTAATTGAATGTCTGATATCCACATTGAGGGATGTAACAAGTATCACCCTTTTTTGATAGTTTTTTCATAGTAATGTGAGAGTTGATATCATATCGCTCACTTAATATAGTTATCTTCTAATAAAATTTGACCAATAGGGCTTTAAATTATTTTTATTTTTATTTCAAATAATAAGAAAAAATTACTACAGGTAGCTGCTGGATTAATTCATTATAATGTAATCTATGATAATTTTCTTACTATTAATAACACTTAAATGTCTTTTTTTTAATAACACTTTAATGTGATAGGTATTAATTTCAGAATTTACTTCTGCGCAAAAAGCCTATTTGTAGGTACTAAGAAAAACATTCTAATTGTCCAATTAAATGGTCAACGTATTTATTGGTAGACTATAATGGTAAAAAAAATCTTTATTACATTTAAAGACTATAAAAATATAATACTAAACTAAAA</genome_strand>
        <mrna_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACNNNAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719352" ref_strand="+" ref_description="SGN-E719352 [FC07CD04]">
      <seq>gggcgattggcggccaatcggccgaattgaatctcttcacacaccatatggttattcaacggcgtcagtcttctctgctatttcgcttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaaaattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70886" stop="134528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71186" g_stop="71266" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="110" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="290" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="365" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="597" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73304" i_stop="74998" i_length="1695">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74999" g_stop="75038" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="637" r_length="40" r_score="0.675"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E719352" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71186" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
          <exon e_start="74999" e_stop="75038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCTTCACACATCAAAGGGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAGGGCTTTGTGGGGGCATACCTAAGGATGTAGACTCTTCACCGACAGGAATCCACAATTTGAAACAAAGAAAAAAACAATATGCGTTTTCTCCATAGACATTATGGCGTCTACGCGTTACAATTTAACCCAACACTTTCTTTATAATTTCTCTTTTTCCATGTCACCGTTCAACTCCATAACACGTATGATTACTTTATTCAATACATTTCACAAATTTCTCTTTTTCCATGTCACCGTTCAAGTTCATAACACGTATTATTACTTTATTCAACACATTTCACAAATTTGTTCTTTAACCCTACTCATACCTAATAATTTAAATTCATGCGACAACACTTTTTAATTCCTTATGTTTGAATAGAATGATAATACGATGATGATAAGTGCATAAATTATAAAAGAAAATAAGTAGGATAATTTAATATTTGATCGAGCATTACAAGAAACTAATAAAAACTACTAAAAGAGAACACTTTTCTTGAGTCAATACAAACATCGTTGAGCTAATGATATATCTCGAAGACTTGCAATTTTAGCATCGTTTCAATTACCTAAATCTTTGCAAAGTGCAATGTTTTTTTTTTTAATAATTAACAAGTGTATACATTTTTGTGTTTATCAAGAAAACTCAAACACCAATCCAACACAGATAGGTGGGTCCTCACTTGCCACCTCCTTTCAATGCCATTTGAAAATTTAAAAGACCAAAAAAGACTACTCCTACGAACTATACAAGAAAAAGGTTAACATTTGTTGTGTGTCTTGTATCTTATTTGATAACTGTCACCCATTATATTGTATTGTATTGTTAGTTCAAATTTAAATATGACATTTGTTTAATTATTTATTATTATAGATAAAAAGAACTTAATTGTACTATAATTCTCATGTGAGTTTACCTTTCAAATTTTTAATATGTAACATTATATAATAATAAAAAATAATAAAAATCATCAAAA</genome_strand>
        <mrna_strand>AATCTCTTCACACACCATATGGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGCTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAAATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721518" ref_strand="+" ref_description="SGN-E721518 [FC14AF10]">
      <seq>tcttcacacatcaaagggttattcaacggcgtcagtcttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcaaaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaagttttgattttgtcttgttgatgcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70890" stop="73627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71190" g_stop="71266" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="257" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="332" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73328" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="589" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="639"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E721518" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71190" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACACATCAAAGGGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCA</genome_strand>
        <mrna_strand>TCTTCACACATCAAAGGGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAAAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279356" ref_strand="-" ref_description="SGN-E279356 [cLEL-4-J24](-)">
      <seq>gcacgagcaacggcgtcagtcttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaacaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtcttttacaaaaaggcaaagaccacaaagaagattgccttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggaaacaagaaaggaaaaggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70913" stop="73419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71206" g_stop="71266" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="241" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="316" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73119" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="364" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E279356" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279356" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71206" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACA</genome_strand>
        <mrna_strand>GCACGAGCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAACAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTTACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGCCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAAACAAGAAAGGAAAAGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280055" ref_strand="-" ref_description="SGN-E280055 [cLEL-7-J19](-)">
      <seq>gcacgagcaacggcgtcagtcttctctgctatttcggttccattctgcgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70913" stop="73419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71206" g_stop="71266" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="241" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="316" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73119" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="364" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E280055" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280055" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71206" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACA</genome_strand>
        <mrna_strand>GCACGAGCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTGCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692661" ref_strand="+" ref_description="SGN-E692661 [LH_Ea09E19]">
      <seq>ctgttcagtcttctctgcaatttcggttccattctccgccggctacaatggtgaacgttcctaaaacgaagaagacttactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttatggtggacagacaaaacctgtcttccacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaggttgcaaacatgtgtcgcaacacccaatcaagagatgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttctagattacttgtgaagcagaatttgatctctctcttctgttctttcactgttcggatattttgttatattgaaagtagttcaggagcttctgttatccaattcatcattattacgtgttcaatcagagatattatcaggagatgaaatgaatatttcaaagtttttgatttaacaagttttgattttgtcttgttgatgcaatgatgcttttgctatggcaataaagttcaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70918" stop="73664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71216" g_stop="71266" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="230" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="305" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73371" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="606" r_length="301" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E692661" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71216" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTC-AAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCT</genome_strand>
        <mrna_strand>CTG-TTCAGTCTTCTCTGCAATTTCGGTTCCATTCTCCGCCGGCTACAATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACTTACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTATGGTGGACAGACAAAACCTGTCTTCCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAGGTTGCAAACATGTGTCGCAACACCCAATCAAG...................................................................................AGATGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTCTAGATTACTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTCGGATATTTTGTTATATTGAAAGTAGTTCAGGAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGAGATATTATCAGGAGATGAAATGAATATTTCAAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTTTGCTATGGCAATAAAGTTCAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372433" ref_strand="+" ref_description="SGN-E372433 [TUS-32-K6](-)">
      <seq>cggcgtcagtcttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcgaagacaagaaaggaaaaggaacatctcttttttaaattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagaaaaaaattaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70916" stop="73588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71216" g_stop="71266" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="231" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="306" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73287" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="522" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="545"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E372433" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71216" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAA</genome_strand>
        <mrna_strand>CGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGAAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAAATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372434" ref_strand="+" ref_description="SGN-E372434 [TUS-32-K6]">
      <seq>ggcgtcagtcttctctgctatttcggttccattctccgccggcgaccatggtgaacgtctctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttatctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttactggtggacagacgaaacctgtctttcacagaaaggcagagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattataacgtgttcaatcagatatattatcatgagatgaaatgaatatttcaagtttttgatttaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70917" stop="73603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71217" g_stop="71266" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="231" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="306" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="538" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E372434" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71217" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTAC-GGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA</genome_strand>
        <mrna_strand>GGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTCTCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTATCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACTGGTGGACAGACGAAACCTGTCTTTCACAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATAACGTGTTCAATCAGATATATTATCATGAGATGAAATGAATATTTCAAGTTTTTGATTTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294126" ref_strand="+" ref_description="SGN-E294126 [cLET-13-F17]">
      <seq>ggcgtcagtcttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70917" stop="73603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71217" g_stop="71266" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="230" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="305" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="537" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E294126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71217" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA</genome_strand>
        <mrna_strand>GGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696501" ref_strand="+" ref_description="SGN-E696501 [LH_Ea09E19](-)">
      <seq>gtcagtcttctctgcaatttcggttccattctccgccggcgacaatggtgaacgttcctaaaacgaagaagacttactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttatggtggacagacaaaacctgtcttccacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaggttgcaaacatgtgtcgcaacacccaatcaagagatgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttctagattacttgtgaagcagaatttgatctctctcttctgttctttcactgttcggatattttgttatattgaaagtagttcaggagcttctgttatccaattcatcattattacgtgttcaatcagagatattatcaggagatgaaatgaatatttcaaagtggttgatttaacaagttttgattttgtcttgttgattcaaggatgcttttgctatggcaataaagttcaactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70920" stop="73664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71220" g_stop="71266" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="227" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="302" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73361" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="593" r_length="291" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="606"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E696501" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71220" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTC-AAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACT</genome_strand>
        <mrna_strand>GTCAGTCTTCTCTGCAATTTCGGTTCCATTCTCCGCCGGCGACAATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACTTACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTATGGTGGACAGACAAAACCTGTCTTCCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAGGTTGCAAACATGTGTCGCAACACCCAATCAAG...................................................................................AGATGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTCTAGATTACTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTCGGATATTTTGTTATATTGAAAGTAGTTCAGGAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGAGATATTATCAGGAGATGAAATGAATATTTCAAAGTGGTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATTCAAGGATGCTTTTGCTATGGCAATAAAGTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340376" ref_strand="+" ref_description="SGN-E340376 [cTOF-2-B24]">
      <seq>tcttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaagttttgattttgtcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70925" stop="73619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71225" g_stop="71266" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="222" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="297" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73319" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="545" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="556"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E340376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71225" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTT</genome_strand>
        <mrna_strand>TCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202853" ref_strand="+" ref_description="SGN-E202853 [cLEB-1-M8]">
      <seq>gcacgaggctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70933" stop="73427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71226" g_stop="71266" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="221" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="296" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73127" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="352" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E202853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71226" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTT</genome_strand>
        <mrna_strand>GCACGAGGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281562" ref_strand="-" ref_description="SGN-E281562 [cLEL-1-F10](-)">
      <seq>gcacgaggctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcacgtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70933" stop="73250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71226" g_stop="71266" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="221" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72950" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="258" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E281562" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281562" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71226" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAAT</genome_strand>
        <mrna_strand>GCACGAGGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCACGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341006" ref_strand="+" ref_description="SGN-E341006 [cTOF-5-N19]">
      <seq>ttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaagttntgattttgtcttgttgatgcaatgatgcttaagctatggcaataaagttcataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70927" stop="73658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71227" g_stop="71266" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="220" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="295" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73365" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="589" r_length="294" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E341006" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71227" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAAC</genome_strand>
        <mrna_strand>TTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTNTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288921" ref_strand="+" ref_description="SGN-E288921 [cLES-17-K17]">
      <seq>ttctctgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70927" stop="73603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71227" g_stop="71266" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="220" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="295" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="527" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E288921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71227" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA</genome_strand>
        <mrna_strand>TTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288815" ref_strand="+" ref_description="SGN-E288815 [cLES-17-B17]">
      <seq>tgctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70932" stop="73592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71232" g_stop="71266" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="215" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="290" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73292" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="511" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E288815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71232" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTT</genome_strand>
        <mrna_strand>TGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738264" ref_strand="+" ref_description="SGN-E738264 [LC13AA11]">
      <seq>ctatttcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70934" stop="134528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71234" g_stop="71266" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="213" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="288" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="520" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74066" g_stop="74079" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="534" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E738264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71234" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
          <exon e_start="74066" e_stop="74079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAG</genome_strand>
        <mrna_strand>CTATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723585" ref_strand="+" ref_description="SGN-E723585 [FC20DH02]">
      <seq>atttcggttccattctccgccggcgaccatggcgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcaaaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70936" stop="134528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71236" g_stop="71266" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="211" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="286" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="518" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73304" i_stop="74702" i_length="1399">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74703" g_stop="74732" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="548" r_length="30" r_score="0.533"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74733" i_stop="75006" i_length="274">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75007" g_stop="75071" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="613" r_length="65" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E723585" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71236" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
          <exon e_start="74703" e_stop="74732"/>
          <exon e_start="75007" e_stop="75071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAGGGCTTTGTGGGGGCATACCTAAGGATGTAGACTCTTCACCGACAGGAATCCACAATTTGAAACAAAGAAAAAAACAATATGCGTTTTCTCCATAGACATTATGGCGTCTACGCGTTACAATTTAACCCAACACTTTCTTTATAATTTCTCTTTTTCCATGTCACCGTTCAACTCCATAACACGTATGATTACTTTATTCAATACATTTCACAAATTTCTCTTTTTCCATGTCACCGTTCAAGTTCATAACACGTATTATTACTTTATTCAACACATTTCACAAATTTGTTCTTTAACCCTACTCATACCTAATAATTTAAATTCATGCGACAACACTTTTTAATTCCTTATGTTTGAATAGAATGATAATACGATGATGATAAGTGCATAAATTATAAAAGAAAATAAGTAGGATAATTTAATATTTGATCGAGCATTACAAGAAACTAATAAAAACTACTAAAAGAGAACACTTTTCTTGAGTCAATACAAACATCGTTGAGCTAATGATATATCTCGAAGACTTGCAATTTTAGCATCGTTTCAATTACCTAAATCTTTGCAAAGTGCAATGTTTTTTTTTTTAATAATTAACAAGTGTATACATTTTTGTGTTTATCAAGAAAACTCAAACACCAATCCAACACAGATAGGTGGGTCCTCACTTGCCACCTCCTTTCAATGCCATTTGAAAATTTAAAAGACCAAAAAAGACTACTCCTACGAACTATACAAGAAAAAGGTTAACATTTGTTGTGTGTCTTGTATCTTATTTGATAACTGTCACCCATTATATTGTATTGTATTGTTAGTTCAAATTTAAATATGACATTTGTTTAATTATTTATTATTATAGATAAAAAGAACTTAATTGTACTATAATTCTCATGTGAGTTTACCTTTCAAATTTTTAATATGTAACATTATATAATAATAAAAAATAATAAAAATCATCAAAATATTATATTTATTAAAATAATATAAGATACAAT</genome_strand>
        <mrna_strand>ATTTCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GCGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAAAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283925" ref_strand="+" ref_description="SGN-E283925 [cLER-13-O24]">
      <seq>tcggttccattctccgccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagctgctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgattttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="70939" stop="73598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71239" g_stop="71266" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="208" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="283" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="515" r_length="232" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E283925" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71239" e_stop="71266"/>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTCCATTCTCCGCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA</genome_strand>
        <mrna_strand>TCGGTTCCATTCTCCGCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTGCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544477" ref_strand="+" ref_description="SGN-E544477 [TUS-66-N7]">
      <seq>gccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggtgataaacgttctctagcatacaacaacttccatgtttcaattccaagctagtacatattggctatataatttagaagatccatttctacttgtattgatccaataatcccatttttaactgttgtagctaattctataattaagtatacctaccttaccaccaataatgaccgaactaaaactataattgaactacataatagtaacctgagctacactgcattaaataatcatatacctgtttggataaagctgatcattgtcactgcaaaactttggttataaattaagtctaggtacaaattaatttgtgtcttgtgtggttgtaagttctaaactgtttagataatatttttcttattgatattatattttagaatgctactatcttttaattcaaagaaatatgacattcattacatgagggatgtttgtatgaagattttgatacacttgattaaaaatagcattactatagtattttttttaatgtataagatatttgctaaaatttgaatggtgtcaaaactctaaatggattgttggtcttagtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71182" stop="72526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71254" g_stop="71266" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="72226" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="754" r_length="741" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E544477" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71254" e_stop="71266"/>
          <exon e_start="71485" e_stop="72226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTT</genome_strand>
        <mrna_strand>GCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGT-CATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544484" ref_strand="+" ref_description="SGN-E544484 [TUS-66-N11]">
      <seq>gccggcgaccatggtgaacgttcctaaaacgaagaatacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggtgataaacgttctctagcatacaacaacttccatgtttcaattccaagctagtacatattggctatataatttagaagatccatttctacttgtattgatccaataatcccatttttaactgttgtagctaattctataattaagtatacctaccttaccaccaataatgaccgaactaaaactataattgaactacataatagtaacctgagctacactgcgtcaaataatcatatacctgtttggataaagctgatcattgtgcactgcaaaactttggttataaattaagtctacgtacaaactaatttgtgtcttgtgtggttgcaagttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71182" stop="72303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71254" g_stop="71266" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="72003" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="533" r_length="520" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E544484" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71254" e_stop="71266"/>
          <exon e_start="71485" e_stop="72003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGT-CACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAA</genome_strand>
        <mrna_strand>GCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAATACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCGTCAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTGCACTGCAAAACTTTGGTTATAAATTAAGTCTACGTACAAACTAATTTGTGTCTTGTGTGGTTGCAAGTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307083" ref_strand="+" ref_description="SGN-E307083 [cLEY-15-F11]">
      <seq>ccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggtgataaacgttctctagcatacaacaacttccatgtttcaattccaagctagtacatattggctatataatttagaagatccatttctacttgtattgatccaataatcccatttttaactgttgtagctaattctataattaagtatacctaccttaccaccaataatgaccgaactaaaactataattgaactacataatagtaacctgagctacactgcattaaataatcatatacctgtttggataaagctgatcattgtcactgcaaaactttggttataaattaagtctaggtacaaattaatttgtgtcttgtgtggttgtaagttctaaactgtttagataatatttttcttattgatattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71182" stop="72337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71255" g_stop="71266" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="72037" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="565" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E307083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71255" e_stop="71266"/>
          <exon e_start="71485" e_stop="72037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATA</genome_strand>
        <mrna_strand>CCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716494" ref_strand="+" ref_description="SGN-E716494 [FB17AG12]">
      <seq>cggtgtatgttgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaagttttgattttgtcttgttgatgcaatgatgcttaagctatggcaataaagttcaactgaactgtccttggctgcattannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71180" stop="73682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71485" g_stop="71664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="189" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="264" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73072" g_stop="73382" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="575" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="600"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E716494" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71485" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTA</genome_strand>
        <mrna_strand>TTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223609" ref_strand="+" ref_description="SGN-E223609 [cLEL-14-G13](-)">
      <seq>cgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71201" stop="134528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71501" g_stop="71664" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="239" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73072" g_stop="73303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="471" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74066" g_stop="74079" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="485" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E223609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71501" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73303"/>
          <exon e_start="74066" e_stop="74079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAG</genome_strand>
        <mrna_strand>CGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350029" ref_strand="+" ref_description="SGN-E350029 [cTOS-4-K10]">
      <seq>tgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaagttttgattttgtcttgttgatgcaatgatgcttaagctatggcaataaagttcaactgaactgtccttggctgcattaatttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71230" stop="73689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71530" g_stop="71664" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="210" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73072" g_stop="73390" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="529" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E350029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71530" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAAC</genome_strand>
        <mrna_strand>TGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350873" ref_strand="+" ref_description="SGN-E350873 [cTOS-7-G14]">
      <seq>tgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaacaagttttgattttgtcttgttgatgcaatgatgcttaagctatggcaataaagttcaactgaactgtccttggctgcattaatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71230" stop="73689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71530" g_stop="71664" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="210" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73072" g_stop="73389" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="528" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E350873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71530" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAA</genome_strand>
        <mrna_strand>TGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695588" ref_strand="+" ref_description="SGN-E695588 [LH_Ea06O18](-)">
      <seq>ggaaaagatagtttagctgctcaaggaaagggtcgttatgatcgcaaacagtcaggttatggtggccagacaaaaccttttttccacaaaaaggcaaagcccccaaagaagattgtcttgaggttgcaatgccaaggttgcaaccatgtgtcgcaacacccaatcaagagatgcaagcattttgggtttggcggagccaagaaaggaaaaggaacatttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71272" stop="73428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71572" g_stop="71664" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249">
            <donor d_prob="0.966" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72914" g_stop="72988" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="168" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73072" g_stop="73128" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="225" r_length="57" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E695588" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71572" e_stop="71664"/>
          <exon e_start="72914" e_stop="72988"/>
          <exon e_start="73072" e_stop="73128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTTGGTATAATGTGAGGATGTTTCTCTGTTTTTGAAGTATGCTGTGTTATAATGTTCACATATATATGCAGTAAAGTAATATTGTCCAGTTCGAGTTCTCTTCTTGATGCTTGAGATTTTGAAGTGATAGTCTACCAAATGATATGGATTTTGAGGCTTCCATCTCTTATTTTATATTAGTCTCCATATAATCAATTCTTATTCATTTATGATTTAAAGTGCATCGAGGCAAATGAGTTTGTGTTGGAGTTAATTTGTGGTTAAAAGATATTGACATAATCGTCTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTT</genome_strand>
        <mrna_strand>GGAAAAGATAGTTTAGCTGCTCAAGGAAAGGGTCGTTATGATCGCAAACAGTCAGGTTATGGTGGCCAGACAAAACCTTTTTTCCACAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGCCCCCAAAGAAGATTGTCTTGAGGTTGCAATGCCAAGGTTGCAACCATGTGTCGCAACACCCAATCAAG...................................................................................AGATGCAAGCATTTTGGGTTTGGCGGAGCCAAGAAAGGAAAAGGAACATTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548248" ref_strand="-" ref_description="SGN-E548248 [TUS-59-H5]">
      <seq>ctcacttgtagtgttaaaagctctaaagacatttatgttattaattgtttatcttaagtttaagtacttgtattcacatataactaactcctattgataaataaattagcttcaatatttgcaaggtgttagttcaacatgtggtgtttaaatactaattcaagccacctaagccaaataggcgatagattcctctaaatccaataattaattaacattttatagttagtgacttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttctttatcactgatttgtgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="72207" stop="73600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72507" g_stop="72988" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73072" g_stop="73301" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="712" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E548248" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72507" e_stop="72988"/>
          <exon e_start="73072" e_stop="73301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAC</genome_strand>
        <mrna_strand>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTAAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544476" ref_strand="+" ref_description="SGN-E544476 [TUS-66-N7](-)">
      <seq>ttcacatataactaactcctattgataaataaattagcttcaatatttgcaaggtgttagttcaacatgtggtgtttaaatactaattcaagccacctaagccaaataggcgatagattcctctaaatccaataattaattaacattttatagttagtgacttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttctttatcactgatttgtgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaaggttgtttactgataaatctctactctgcagttgcatttccattactattaaaaaaaatattcattgttcttgatgttgtgcagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="72279" stop="134536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72579" g_stop="73303" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74066" g_stop="74100" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="760" r_length="35" r_score="0.543"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E544476" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72579" e_stop="73303"/>
          <exon e_start="74066" e_stop="74100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAGGGCTTTGTGGGGGCATACCTA</genome_strand>
        <mrna_strand>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGCCCGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285146" ref_strand="-" ref_description="SGN-E285146 [cLER-20-G2]">
      <seq>cttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttcttcatcactgatttgcgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="72439" stop="73600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72739" g_stop="72988" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73072" g_stop="73300" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="479" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E285146" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72739" e_stop="72988"/>
          <exon e_start="73072" e_stop="73300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAA</genome_strand>
        <mrna_strand>CTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTCATCACTGATTTGCGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544483" ref_strand="+" ref_description="SGN-E544483 [TUS-66-N11](-)">
      <seq>atctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgctaaagttgcaaacatatgtcgcaacacccaatcaaggttgtttattgataaatctatactctgcagttgcatttccattactattaaaaaaaatattcattgttcttgatgttgtgcagaggtgcaagcattttgagattgggggagtccagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaaggaatatttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="72588" stop="73589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72888" g_stop="73289" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E544483" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72888" e_stop="73289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGT</genome_strand>
        <mrna_strand>ATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCTAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTATTGATAAATCTATACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGGGGAGTCCAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAAGGAATATTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348194" ref_strand="+" ref_description="SGN-E348194 [cTOF-27-P8]">
      <seq>gtttggcggtttccttgggtttcgaattggataccttctttctgtggacaggaagtttatgttattttccagtgggttgttcatgcctgcatttcaatctggtggccctatccattccttgatctttcatctgcagtttcacctttgtggtacttgttggtggcatttatgcacataccatgctatggtgtttttgttttggtaatgaagctgaaacaccatttgctttcgaagtggtttcctcagtcttatcagtgtgcaagatgatacaacgcgcttccatcccaaccaagtcaggatcggctatatgtatcctcgttgtactaaggccaaataacaaatttttcagctttcaagacggctatagcagctcgtgttttgaacaccaaacttggatttttttgttcttttttctggaaggaacgacgaaatggaaaaaaaaaaagttatttagcaaagtagttgtgaatcttttagaagtttaggcaaaaaaaaaataaaatacagtgatttaaaacttctggtttgttagatgtacatttttggggtaactatggaaacagagattttcttatttatatnaactattcacnttgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="76599" stop="78075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76814" g_stop="76818" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76819" i_stop="76903" i_length="85">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76904" g_stop="76995" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="101" r_length="95" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76996" i_stop="77080" i_length="85">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77081" g_stop="77128" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="149" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77129" i_stop="77330" i_length="202">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77331" g_stop="77771" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="594" r_length="445" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="609"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E348194" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76814" e_stop="76818"/>
          <exon e_start="76904" e_stop="76995"/>
          <exon e_start="77081" e_stop="77128"/>
          <exon e_start="77331" e_stop="77771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTT-GGTAAGTTTCCATACTTTTATCGATACCAAATGTGGTCTTCGTAGATTTGATGTAGTTACTGATTCTCATTGTTATGCTATTTCAGCGGTTTCCTTGG-TTTCGAATTGGATA-CTTCTTTCTGTGGACAGG-AGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTGGTAATGATAATGCTAATACTTATATGTTGTTATCTTTTCACTTGTTTAATCGATTAATTCGCATCCATGTTATTTTGTTAAACAGGTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTGGTATGTACTCCCTATCATGTCCTCGGATTCTTTAAAAATGTCGTGCATGCAGAATCCTATAAATTTGGTGTATTTTTGGAGGATCGGGCACATGTACCATGACATTTTTGGAGAGTCCGAGTAGCATAGACAAAAAGTCCTGAATTTGTTTTGGCAAGTAAACTGGAAGATTTACTATGAACTATTGAATTGATATTTTTAGGTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATC-TTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTT-AAACTTCTGGTTTGTTAGATGTACA-TTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATAT-AACTATTCACTT</genome_strand>
        <mrna_strand>GTTTGG.....................................................................................CGGTTTCCTTGGGTTTCGAATTGGATACCTTCTTTCTGTGGACAGGAAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG.....................................................................................GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG..........................................................................................................................................................................................................GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTTAAAACTTCTGGTTTGTTAGATGTACATTTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATATNAACTATTCACNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747210" ref_strand="+" ref_description="SGN-E747210 [GI|12231306]">
      <seq>ggactggagtttatgttattttccagtgggttgttcatgcctgcatttcaatctggtggccctatccattccttgatctttcatctgcagtttcacctttgtggtacttgttggtggcatttatgcacataccatgctatggtgtttttgttttggtaatgaagctgaaacaccatttgctttcgaagtggttcctcagtcttatcagtgtgcaagatgatacaacggcttccatcccaaccaagtcaggatcggctatatgtatcctcgttgtactaaggccaaataacaaatttttcagctttcaagacggctatagcagctcgtgttttgaacaccaaacttggatttttttgttcttttttctggaaggaacgacgaaatggaaaaaaaaaagttatttagcaaagtagttgtgaatctttagaagtttaggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="76641" stop="77980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76941" g_stop="76995" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76996" i_stop="77080" i_length="85">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77081" g_stop="77128" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="103" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77129" i_stop="77330" i_length="202">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77331" g_stop="77679" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="449" r_length="346" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E747210" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76941" e_stop="76995"/>
          <exon e_start="77081" e_stop="77128"/>
          <exon e_start="77331" e_stop="77679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTGGTAATGATAATGCTAATACTTATATGTTGTTATCTTTTCACTTGTTTAATCGATTAATTCGCATCCATGTTATTTTGTTAAACAGGTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTGGTATGTACTCCCTATCATGTCCTCGGATTCTTTAAAAATGTCGTGCATGCAGAATCCTATAAATTTGGTGTATTTTTGGAGGATCGGGCACATGTACCATGACATTTTTGGAGAGTCCGAGTAGCATAGACAAAAAGTCCTGAATTTGTTTTGGCAAGTAAACTGGAAGATTTACTATGAACTATTGAATTGATATTTTTAGGTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATA</genome_strand>
        <mrna_strand>GGACTGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG.....................................................................................GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG..........................................................................................................................................................................................................GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGG-TTCCTCAGTCTTATCAGTGTGCAAGATGATACAACG-GCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGG-AAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246035" ref_strand="+" ref_description="SGN-E246035 [cLEF-54-E24]">
      <seq>cttctgttaccctttgagccaaacttgtttccccatatttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaacctgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagaatttgacggaatctgaatcagaagaatctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttctttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79367" stop="81095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79667" g_stop="79976" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="458" r_length="146" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.877" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80795" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="494" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E246035" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79667" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTTACCCTTTGAG-CAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAA-CTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAG-ATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTC-TTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGC</genome_strand>
        <mrna_strand>CTTCTGTTACCCTTTGAGCCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACCTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGAATTTGACGGAATCTGAATCAGAAGAATCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264092" ref_strand="+" ref_description="SGN-E264092 [cLEG-64-C4]">
      <seq>agcaaacttgtttccccatatttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaaggtgacgcagttgatattgttgggacaggaagggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79383" stop="81221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79683" g_stop="79976" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="438" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="601" r_length="163" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E264092" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79683" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTT-AGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG</genome_strand>
        <mrna_strand>AGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAAGGTGACGCAGTTGATATTGTTGGGACAGGAAGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257698" ref_strand="+" ref_description="SGN-E257698 [cLEG-39-M10]">
      <seq>catatttattgcacccaaaaatcccttcttcagctacacttcattaggttgggtcactgaatcatctgcattatgctttctctcccatggctctgattcagtgtcaaattccatttccagcggtatctccatctgtttctccaagaattgaatttacaaaattgattcttggaaatagtcgcaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaaatccaataagcattcatccatatccacatttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79399" stop="80275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79699" g_stop="79975" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E257698" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79699" e_stop="79975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGA</genome_strand>
        <mrna_strand>CATATTTATTGCACCCAAAAATCCCTTCTTCAGCTACACTTCATTAGGTTGGGTCACTGAATCATCTGCATTATGCTTTCTCTCCCATGGCTCTGATTCAGTGTCAAATTCCATTTCCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGATTCTTGGAAATAGTCGCAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAAATCCAATAAGCATTCATCCATATCCACATTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378691" ref_strand="+" ref_description="SGN-E378691 [TUS-28-A5]">
      <seq>aggattgcacccaaaaatcccttcttctgcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaagaggagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79406" stop="82133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79703" g_stop="79976" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="580" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81096" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="664" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81757" g_stop="81833" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="741" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E378691" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79703" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81096"/>
          <exon e_start="81757" e_stop="81833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGT</genome_strand>
        <mrna_strand>AGGATTGCACCCAAAAATCCCTTCTTCTGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAAGAGGAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215057" ref_strand="+" ref_description="SGN-E215057 [cLEC-78-G16]">
      <seq>tttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggangggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79403" stop="81221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79703" g_stop="79976" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="580" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81019" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="587" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E215057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79703" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGA</genome_strand>
        <mrna_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGANGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305978" ref_strand="+" ref_description="SGN-E305978 [cLEY-17-F5]">
      <seq>tttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79403" stop="81105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79703" g_stop="79976" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80805" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="464" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E305978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79703" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTG</genome_strand>
        <mrna_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272067" ref_strand="+" ref_description="SGN-E272067 [cLEM-8-H10]">
      <seq>ttgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaagctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79407" stop="81333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79707" g_stop="79976" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="414" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="576" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81033" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="597" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E272067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79707" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCA</genome_strand>
        <mrna_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAAGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270662" ref_strand="+" ref_description="SGN-E270662 [cLEM-6-A14]">
      <seq>ttgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggcttntaattagtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79407" stop="80301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79707" g_stop="79976" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80122" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="296" r_length="26" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E270662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79707" e_stop="79976"/>
          <exon e_start="80098" e_stop="80122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTT-TAATTAGTGGGA</genome_strand>
        <mrna_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTNTAATTAGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305061" ref_strand="+" ref_description="SGN-E305061 [cLEX-10-H24]">
      <seq>tcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79434" stop="80473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79734" g_stop="79976" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80173" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="319" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E305061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79734" e_stop="79976"/>
          <exon e_start="80098" e_stop="80173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATG</genome_strand>
        <mrna_strand>TCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739606" ref_strand="+" ref_description="SGN-E739606 [LC18AE06]">
      <seq>caatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgtcagacctatcagaaaaaagctgaaagtaaagacggtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccataaaatggctaaggcattgcaaagatttggcatgaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79458" stop="82491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79757" g_stop="79976" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="364" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="526" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81096" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="610" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81757" g_stop="81945" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="799" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82146" g_stop="82191" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="845" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E739606" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79757" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81096"/>
          <exon e_start="81757" e_stop="81945"/>
          <exon e_start="82146" e_stop="82191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAG</genome_strand>
        <mrna_strand>CAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCATAAAATGGCTAAGGCATTGCAAAGATTTGGCATGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736474" ref_strand="+" ref_description="SGN-E736474 [LC05DF06]">
      <seq>ctgttttattcttcctctgccatggctctgtttcattgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtatccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactacgtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaacctggaattggtttcatgatgtctccgatctaccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79464" stop="82118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79764" g_stop="79976" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="357" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="519" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81096" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="603" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81757" g_stop="81818" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="665" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E736474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79764" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81096"/>
          <exon e_start="81757" e_stop="81818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCC</genome_strand>
        <mrna_strand>CTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCATTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTATCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTACGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAACCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315041" ref_strand="+" ref_description="SGN-E315041 [cTOB-4-M20]">
      <seq>tgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79465" stop="81195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79765" g_stop="79976" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="356" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80895" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="492" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E315041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79765" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTG</genome_strand>
        <mrna_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311870" ref_strand="+" ref_description="SGN-E311870 [cTOA-15-F2]">
      <seq>tgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79465" stop="81085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79765" g_stop="79976" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="356" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80785" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="382" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E311870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79765" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGAT</genome_strand>
        <mrna_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331255" ref_strand="+" ref_description="SGN-E331255 [cTOD-6-D15]">
      <seq>ttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79467" stop="80533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79767" g_stop="79976" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80233" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="346" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E331255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79767" e_stop="79976"/>
          <exon e_start="80098" e_stop="80233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCT</genome_strand>
        <mrna_strand>TTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325571" ref_strand="+" ref_description="SGN-E325571 [cTOC-15-O16]">
      <seq>gaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79504" stop="80522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79804" g_stop="79976" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80222" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="298" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E325571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79804" e_stop="79976"/>
          <exon e_start="80098" e_stop="80222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAA</genome_strand>
        <mrna_strand>GAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293101" ref_strand="+" ref_description="SGN-E293101 [cLET-12-O2]">
      <seq>gcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgtcagacctatcagaaaaaagctgaaagtaaagacggtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccataaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagcctacgaggtggaggtccagagtacaatgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctctcctggtaagtggacgcgttgataatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="80737" stop="83299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81037" g_stop="81096" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81757" g_stop="81945" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="249" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82146" g_stop="82236" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="340" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82385" g_stop="82444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="400" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82694" g_stop="82812" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="519" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82946" g_stop="82999" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="573" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E293101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81037" e_stop="81096"/>
          <exon e_start="81757" e_stop="81945"/>
          <exon e_start="82146" e_stop="82236"/>
          <exon e_start="82385" e_stop="82444"/>
          <exon e_start="82694" e_stop="82812"/>
          <exon e_start="82946" e_stop="82999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</genome_strand>
        <mrna_strand>GCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237173" ref_strand="+" ref_description="SGN-E237173 [cLEL-7-K3](-)">
      <seq>gtaatggttaaaagattcaaaatcaaagaaaaagactggataacacaactcaacttgcaattttggtttgtaaaaggattagaataaagggttgaaagagaacaaaaaataaatgtaaactttggcttgtgaaatttgcaaggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacgataaccaagcaaagcaagtggctccttgttagttgttggccattaaattttttttttatcatttctgaaatgactataaatggctttgtagttatgtattattttttgtataaatttccctaccaccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="82949" stop="83873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83249" g_stop="83589" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E237173" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83249" e_stop="83589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAAATGCAAAGACATTAACA</genome_strand>
        <mrna_strand>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCACCCCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237305" ref_strand="+" ref_description="SGN-E237305 [cLEL-7-K3](-)">
      <seq>gtaatggttaaaagaattcaaaatcaaagaaaaagacgtggataacacaaactcaacttgcaattttggtttgtaaaaggattagaataaagggttgaaagagaacaaaaaataaatgtaaactttggcttgtgaaatttgcaaggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacgataaccaagcaaagcaagtggctccttgttagttgttggccattaaattttttttttatcatttctgaaatgactataaatggctttgtagttatgtattattttttgtataaatttccctnccanccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="82949" stop="83873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83249" g_stop="83572" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="347"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E237305" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83249" e_stop="83572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGTTAAAAG-ATTCAAAATCAAAGAAAAAGAC-TGGATAACAC-AACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAA</genome_strand>
        <mrna_strand>GTAATGGTTAAAAGAATTCAAAATCAAAGAAAAAGACGTGGATAACACAAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTNCCANCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396689" ref_strand="+" ref_description="SGN-E396689 [TUS-43-F13]">
      <seq>atacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagtgcaattctcgaagtgactctggtcagttcaaccttccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="83779" stop="86010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84079" g_stop="84261" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84262" i_stop="85465" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85569" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="287" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85570" i_stop="85655" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85656" g_stop="85710" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="342" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E396689" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84079" e_stop="84261"/>
          <exon e_start="85466" e_stop="85569"/>
          <exon e_start="85656" e_stop="85710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAA</genome_strand>
        <mrna_strand>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGTGCAATTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379244" ref_strand="+" ref_description="SGN-E379244 [TUS-1-O7]">
      <seq>tacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagtgcagttctcgaagtgactctggtcagttcaaccttccacaaaagcagcatcctgaatttgagtataagacagaattccagagtcatgaatctgagtttgattatttgaagagtgtggaaattgaagagaagattaataaaatcagatggtgtacgaaactcaacagatcgttatttcttcttacagcaaacgacaggacgataaaactttggaagatcaaggaacagaaagtaaagaaagttaaacaaatggacatcaattcatctgtgacttcagagaattctcttttagctgatagaagttacatgagtggacnaagtgaatcatctcatgttaatggttacagtctagaatggactaacaaaatgaacggcacatcatcatcacatcttgcnagatatcataatgtagattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="83780" stop="87391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84080" g_stop="84261" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84262" i_stop="85465" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85569" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85570" i_stop="85655" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85656" g_stop="85763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="394" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85764" i_stop="85883" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85884" g_stop="86003" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="514" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86004" i_stop="86903" i_length="900">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86904" g_stop="87077" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="688" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87078" i_stop="87211" i_length="134">
            <donor d_prob="0.350" d_score="1.00"/>
            <acceptor a_prob="0.492" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87212" g_stop="87238" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="715" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E379244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84080" e_stop="84261"/>
          <exon e_start="85466" e_stop="85569"/>
          <exon e_start="85656" e_stop="85763"/>
          <exon e_start="85884" e_stop="86003"/>
          <exon e_start="86904" e_stop="87077"/>
          <exon e_start="87212" e_stop="87238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAGGTATGATTAGATAATTATTTTATCTACTTTCGGGTATACATCTGTTAGGCTGCTTAAAATTCTGCATGTATAGCTGATCTTTATGAACTATGGATGCTGTTCATGTTGCATTTTCTTCAGTTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAGGTATGAAATCCCTGTGGCATTCGTGAAACTTCAGACAATGTCAAATTGAAGAAACAGATGATTGTCTTATAAGTTTCTGGAAGTTTGGATTAGGCCTTTAGGGGATTAACTTATCTGTTTGTTATGATATGTGATTTAGTACTACAATGTACCCTGAGAAATCAATTGTTTGCCTTTACATGGTTCCTCTTTACATAACTATGTCTGAATAAATCAGGTGATGAAAAGATAAGAACTGTGTTCTATGGATAACCTCAGGTTTCTCTGGTTGTTCTCTTGCTGGCTAAGAGCTCCTTCAGAATGATACTAGACAAATACTGCTTACATGAGCTTTTTTATATTTCAGCAGCTACTACATTTCCATATTTACTCAAAGATTGAGCATGCAAAATGGACTATCCTTTATATGTGTGTGTGTGTGTGTGTGTGTCTGGTGCCACTCCAAATAGAAGGTTCTGTTCTGGGTGCCTTTTCCTGTATCATCAAAATATTGATAACTAGAAATGCATGTGGTACTATCATTTTTTTTCTTCTAAAGTATCTCATACTTAGATACTCTTCTGACGTTCACCTAACACCAAAACTAAAAACAAGGGGAAAATAAAGGAGGAATTCTCTGTGATGAAATTCAAGTATTAGCTATTGCCTGTTAAACGTCTGTCCAAAATGGAATTTGTCTGTTCATTAAGAAAAAAGGCTGACTCCATGAGGTAGTGGTAAGGTCTGCATACACACTATCCTCCCTAGACCCCACTTTGTGGTATATCGTTGTATCAAGAGAAAAGGCTGGATGGGTGTCCTTTCTGGATAAATTTTGATAGACTTTTCAGTTCCCGTTACTGTGTGTTTACTAAGTTGTACATATCAATGTACTATTTTCTTAATTTATTTCTTTTACAGATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACAAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACATGTATGACATGGAGAGTGTAAATTTTTCTACTTGTTTCCTAAATATTCTTGCAGTTTTATTAAATTCACCTCTCCTAAACTCTATGCATTTGACATATTCTCATAGCTTGTAATTCTGGCCTCCACTATATGTAGCTTGC-AGATATCATAAATGTAGATTAT</genome_strand>
        <mrna_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAG........................................................................................................................TTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACNAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACAT......................................................................................................................................CTTGCNAGATATCAT-AATGTAGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200945" ref_strand="+" ref_description="SGN-E200945 [cLEC-5-P14]">
      <seq>tacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="83780" stop="85870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84080" g_stop="84261" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84262" i_stop="85465" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85569" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85570" i_stop="85655" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85656" g_stop="85668" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="299" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E200945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84080" e_stop="84261"/>
          <exon e_start="85466" e_stop="85569"/>
          <exon e_start="85656" e_stop="85668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGT</genome_strand>
        <mrna_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397104" ref_strand="+" ref_description="SGN-E397104 [TUS-44-L16]">
      <seq>tgcaaatgctcatgatttcaacatcaattccatctcaaacaatagcgatggtgagacattcctctctggggatgaccttaggataaacgtatggaaccttgaggttagagatcagtgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactcacatggagtcttccccggttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="86959" stop="89795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87259" g_stop="87303" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87304" i_stop="87508" i_length="205">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87509" g_stop="87627" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="164" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87628" i_stop="88536" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88537" g_stop="88660" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88661" i_stop="88788" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88789" g_stop="88912" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="412" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88913" i_stop="89459" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89460" g_stop="89495" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="448" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E397104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87259" e_stop="87303"/>
          <exon e_start="87509" e_stop="87627"/>
          <exon e_start="88537" e_stop="88660"/>
          <exon e_start="88789" e_stop="88912"/>
          <exon e_start="89460" e_stop="89495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAGGTATTCTTGTGTTCTTGCAAATATTATGAATTTCAAACTTGCTCACTTGAAATGAAATTTGACCAGACCTCTGATTGAGCTTGATCGATCAGCTCAGATTATCCTTTATCAGTTATCAGTACCAGAAAGACTCAACTGTATTGAAGTTGTTTACCAGATGAAATGTCAGGCATTAGATAATACTCTGGTTTTAATACTTTTACAGCGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCACATGGAGTCTTCCCCGGTTGCA</genome_strand>
        <mrna_strand>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAG.............................................................................................................................................................................................................CGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397103" ref_strand="+" ref_description="SGN-E397103 [TUS-44-L16](-)">
      <seq>ttaggataaacgtatggaaccttgaggttagagatcagtgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactcacatggagtcttccccggttgcaacatataagattcatgaacacctccgtcctaagcttcctaagttgtatacagatgatgccatcttcgataagttcgattgctgcctgaatggaaacgaacttcaatttgcaactggatcttacagcaatcatcttagggtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="87241" stop="90270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87541" g_stop="87627" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87628" i_stop="88536" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88537" g_stop="88660" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="211" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88661" i_stop="88788" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88789" g_stop="88912" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="335" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88913" i_stop="89459" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89460" g_stop="89528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89529" i_stop="89675" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89676" g_stop="89767" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="496" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89768" i_stop="89900" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89901" g_stop="89971" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="567" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E397103" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87541" e_stop="87627"/>
          <exon e_start="88537" e_stop="88660"/>
          <exon e_start="88789" e_stop="88912"/>
          <exon e_start="89460" e_stop="89528"/>
          <exon e_start="89676" e_stop="89767"/>
          <exon e_start="89901" e_stop="89971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAGGTATGAGGGTCTTGCCACAATTTTTTCTTTTAGGTTTACAAAGATATAAACAGTTAGCGATATGGTGAGTTGTGTGAACATGCTATATAATCAAAATAGATTGATAGCATTTTCTGATTTTGTGACCTAATACATGTTGTATGGCAGCTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAAT</genome_strand>
        <mrna_strand>TTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG...................................................................................................................................................CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG.....................................................................................................................................CAATCATCTTAGGGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288849" ref_strand="+" ref_description="SGN-E288849 [cLES-17-B6]">
      <seq>tgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="87279" stop="89773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87579" g_stop="87627" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87628" i_stop="88536" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88537" g_stop="88660" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="173" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88661" i_stop="88788" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88789" g_stop="88912" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="297" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88913" i_stop="89459" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89460" g_stop="89473" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="311" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E288849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87579" e_stop="87627"/>
          <exon e_start="88537" e_stop="88660"/>
          <exon e_start="88789" e_stop="88912"/>
          <exon e_start="89460" e_stop="89473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCA</genome_strand>
        <mrna_strand>TGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379791" ref_strand="+" ref_description="SGN-E379791 [TUS-1-O7](-)">
      <seq>tccccggttgcaacatataagattcatgaacacctccgtcctaagcttcctaagttgtatacagatgatgccatcttcgataagttcgattgctgcctgaatggaaacgaacttcaatttgcaactggatcttacagcaatcatcttcgtgtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaagaatcaaatagaaaaccaacctctcaaactacttcaaggcctcgaaggtcatcattgagcaacttggcacgaggattttatcgccaaggacaagatcatgactcagaaaatgagatatcctgtaacctgaagtccaagttgctgcatgtggcttggcatccaacgcacaatctgatcgcttgctccagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtctaatctcaccgttaacagtctgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagatagcatacacagaagtttgatacttgcaagttgcacaaatacattttgtgcacatctgaggaagtaaaggtggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="89184" stop="90945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89484" g_stop="89528" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89529" i_stop="89675" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89676" g_stop="89767" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="137" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89768" i_stop="89900" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89901" g_stop="89978" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="215" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89979" i_stop="90059" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90060" g_stop="90136" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="292" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90259" g_stop="90645" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="679" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E379791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89484" e_stop="89528"/>
          <exon e_start="89676" e_stop="89767"/>
          <exon e_start="89901" e_stop="89978"/>
          <exon e_start="90060" e_stop="90136"/>
          <exon e_start="90259" e_stop="90645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAGGTATGAGGGTCTTGCCACAATTTTTTCTTTTAGGTTTACAAAGATATAAACAGTTAGCGATATGGTGAGTTGTGTGAACATGCTATATAATCAAAATAGATTGATAGCATTTTCTGATTTTGTGACCTAATACATGTTGTATGGCAGCTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAGGTAACCCTTGTGCTGAGATGATCTTCTATTGTCTTTATTCTGTTGTTGAATTATTGACACTTCATTAACCTTGATTTGTAGAAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAA</genome_strand>
        <mrna_strand>TCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG...................................................................................................................................................CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG.....................................................................................................................................CAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG.................................................................................AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG..........................................................................................................................GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAGGAAGTAAAGGTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734089" ref_strand="+" ref_description="SGN-E734089 [LB11DA07]">
      <seq>ctgtatggaaacgaacttcaatttgcaactggatcttacaggtttatccttcaaagaaagttttaacccctacatatgaatagttctatcagttgttgtgtaattatgtacttccattttgttgatattctgtacatgtgatgaaatttttatggtaatcttttgttgatttagcaatcatcttcgtgtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaagaatcaaatagaaaaccaacctctcaaactacttcaaggcctcgaaggtcatcattgagcaacttggcacgaggattttatcgccaaggacaagatcatgactcagaaaatgagatatcctgtaacctgaagtccaagttgctgcatgtggcttggcatccaacgcacaatctgatcgcttgctccagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtctaatctcaccgttaacagtctgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="89427" stop="90882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89727" g_stop="89978" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89979" i_stop="90059" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90060" g_stop="90136" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="329" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90259" g_stop="90583" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="654" r_length="325" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E734089" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89727" e_stop="89978"/>
          <exon e_start="90060" e_stop="90136"/>
          <exon e_start="90259" e_stop="90583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAGGTAACCCTTGTGCTGAGATGATCTTCTATTGTCTTTATTCTGTTGTTGAATTATTGACACTTCATTAACCTTGATTTGTAGAAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAG</genome_strand>
        <mrna_strand>CTGTATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG.................................................................................AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG..........................................................................................................................GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396688" ref_strand="+" ref_description="SGN-E396688 [TUS-43-F13](-)">
      <seq>caaggacaagatcatgatttagaaaatgagatatcctgtaacctgaagttcaagttgttgcatgtggcttggcatccaacgcacaatttgatcgcttgatacagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtttaatctcaccgttaacagtttgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagatagcatacacagaagtttgatacttgcaagttgcacaaatacattttgtgcacatttgaagaagtaaaggtggcaaacatttttggttgatactgttgcattgttactttattattcatttcttacttttctctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="89957" stop="91005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90133" g_stop="90136" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90259" g_stop="90713" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="459" r_length="455" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E396688" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90133" e_stop="90136"/>
          <exon e_start="90259" e_stop="90713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</genome_strand>
        <mrna_strand>CAAG..........................................................................................................................GACAAGATCATGATTTAGAAAATGAGATATCCTGTAACCTGAAGTTCAAGTTGTTGCATGTGGCTTGGCATCCAACGCACAATTTGATCGCTTGATACAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTTTAATCTCACCGTTAACAGTTTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATTTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372689" ref_strand="+" ref_description="SGN-E372689 [TUS-31-K17]">
      <seq>gaatcaactaaagatgaaatcaagtacagaggaatcagagcaatgccctttgtcatagggaatgagacatttgagaagctaggaacaattggaagctcgtcgaatctgttggtttatttaacaagtatatttcatttgaagagcataacagctactaatattgtcaatatcttcaatggtacttgcaactttggaaccttgcttggagcttttctttctgatacgtactttggtcgttacaacattcttggatttgcctcagtctgttccttcttggggatgttagtactgactttaacagcagcagtctcaaagtttcatccacctgaatgtggtaatcaagaaactgcaccagtatgtgttggtccaacagcaggacaaatgacatttttactaggaggttttggattgctggtaattggtgcttctggcataaggccttgtagtttagcatttggggctgatcaatttgatcccaatactgaatctggaagaagaggagttatgagtttcttcaactggtactatttcactcgcacgtttgctgtgatggtctcattgactgtcattgtgtatgttcaatcaaatatcagctggtctctaggattagccatcccaacaattactatgttcctttcttgtgcacttttcttcgtgggcactaaaatatatgtcaggtttgtgccaaaaggcagccccgttgtcaagtgtcgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="91672" stop="93405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91972" g_stop="92029" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92030" i_stop="92145" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92146" g_stop="92363" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="276" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92364" i_stop="92664" i_length="301">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92665" g_stop="93106" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="719" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E372689" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91972" e_stop="92029"/>
          <exon e_start="92146" e_stop="92363"/>
          <exon e_start="92665" e_stop="93106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAGGTATATATTTTTATTTTTTGCGTATACTAAACTTATTGTATACTTTTCGATGATATGAAATGAGACTGGATTCATATAGCTGACTCTAACTTTGTGTTGTATATGGTAAACTGCAGGGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTGGTACAAGAAATATTCATGTTGAGATAAAACTAGAGATTAAGAGTTGTTTGGTACGACAGAAGTCATTTTTTATGTTTTCAGATTGGAAAGTGTTTTGCTGAAAGTTTTGAGAAGTAAAGATTGATAACGATGTTTACAATCTTTCTAGAAAGAATCTCCTTTATCATTCAACATGAAGAAAAAAAGACAAATTGTCTAGGAAATGGCTTATGTCGTACCAAACACACATTAACTTAATCATTATTTGAAAGTCGTTGTAGTTACTGGATTTATCGTTGTTTTCCAAATTGATCATTTACAGGGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAG-CCCGTTGTCAAGTGTCGCACAGG</genome_strand>
        <mrna_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG....................................................................................................................GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG.............................................................................................................................................................................................................................................................................................................GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCCGTTGTCAAGTGTCGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292065" ref_strand="+" ref_description="SGN-E292065 [cLET-1-C7]">
      <seq>gaatcaactaaagatgaaatcaagtacagaggaatcagagcaatgccctttgtcatagggaatgagacatttgagaagctaggaacaattggaagctcgtcgaatctgttggtttatttaacaagtatatttcatttgaagagcataacagctactaatattgtcaatatcttcaatggtacttgcaactttggaaccttgcttggagcttttctttctgatacgtactttggtcgttacaacattcttggatttgcctcagtctgttccttcttggggatgttagtactgactttaacagcagcagtctcaaagtttcatccacctgaatgtggtaatcaagaaactgcaccagtatgtgttggtccaacagcaggacaaatgacatttttactaggaggttttggattgctggtaattggtgcttctggcataaggccttgtagtttagcatttggggctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="91672" stop="93154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91972" g_stop="92029" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92030" i_stop="92145" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92146" g_stop="92363" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="276" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92364" i_stop="92664" i_length="301">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92665" g_stop="92854" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="466" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E292065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91972" e_stop="92029"/>
          <exon e_start="92146" e_stop="92363"/>
          <exon e_start="92665" e_stop="92854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAGGTATATATTTTTATTTTTTGCGTATACTAAACTTATTGTATACTTTTCGATGATATGAAATGAGACTGGATTCATATAGCTGACTCTAACTTTGTGTTGTATATGGTAAACTGCAGGGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTGGTACAAGAAATATTCATGTTGAGATAAAACTAGAGATTAAGAGTTGTTTGGTACGACAGAAGTCATTTTTTATGTTTTCAGATTGGAAAGTGTTTTGCTGAAAGTTTTGAGAAGTAAAGATTGATAACGATGTTTACAATCTTTCTAGAAAGAATCTCCTTTATCATTCAACATGAAGAAAAAAAGACAAATTGTCTAGGAAATGGCTTATGTCGTACCAAACACACATTAACTTAATCATTATTTGAAAGTCGTTGTAGTTACTGGATTTATCGTTGTTTTCCAAATTGATCATTTACAGGGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATC</genome_strand>
        <mrna_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG....................................................................................................................GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG.............................................................................................................................................................................................................................................................................................................GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372688" ref_strand="+" ref_description="SGN-E372688 [TUS-31-K17](-)">
      <seq>gccaatgctgcaaatgactcaggggaaaggtgcaattttatccatgtcaggactatgggtaatacctcagatggcattagcaggtctttttgaggcatttacactaatcagcgagaacgagtttttttataaacaatgccctgaaaacatgaggagcatcgcggcatcttttttttttgttggaatgggggggtcgagttatttgagcagttttttgacatcagttgttcataaaacatcaagttggttgggtgaggaccttaacaaggggaaattagactttttttattacctcattgcaggactaaaaattttgaatttgggttatttttttgtgtgggcaaaatgggacaagtataaaggaagggcagggggcaacaaagtgagtgaaaaaacagatcaaaatgaaattgtaatttaatttttcagtcagcaaaatcagtatggtagtttttccatgattagtaaagctttgttggaacccaatatagaaagtaaaacaaaaaaaatgaaaattatgggtccctttcatccttcatgaggtaatgcccaaatcaaatcaattgtgttgcccatatcaatcgagtatttatggtcaacaaagtttttttaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="93625" stop="134528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93925" g_stop="94007" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94008" i_stop="94236" i_length="229">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94237" g_stop="94768" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="615" r_length="532" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94769" i_stop="95482" i_length="714">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95483" g_stop="95506" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="639" r_length="24" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95507" i_stop="95644" i_length="138">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.675" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95645" g_stop="95665" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="660" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E372688" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93925" e_stop="94007"/>
          <exon e_start="94237" e_stop="94768"/>
          <exon e_start="95483" e_stop="95506"/>
          <exon e_start="95645" e_stop="95665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTCATCCATGTCAGGACTATGGCTAATACCTCAGATGGCATTAGCAGGTAACCTTTTGCAAATCAATGTTTGTTTTACAGTTCTGCTCATCTTTTCAACTTCAACTTGAATCGGAGAATTTGAGGTTCAAAAACTAGTTTGCGGTGTGAAATTCTCAGATATATTATAGACGAAGCATTTGCCAAAGGATGTTTTCATGAATCCAGAACGAAAGTTAACTCCTTTTTTCATGTTAAGACACAATTCTAACCTTCAAATACTCATGACTGAATACAGGTCTTTCTGAGGCATTTACACTAATCAGCGAGAACGAGTTCTTCTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTCTTCTTTGTTGGAATGGCGGGGTCGAGTTATTTGAGCAGTTTCTTGACATCAGTTGTTCATAAGACATCAAGTTGGTTGGCTGAGGACCTTAACAAGGGGAAATTAGACTCTTTTTATTACCTCATTGCAGGACTAGAAATTCTGAATTTGGGTTATTTTCTTGTGTGTGCAAAATGGTACAAGTATAAAGGAAGGGCAGGTGACAACAAAGTGAGTGAAAGAACAGATCAAAATGAAATTGTAATCTAATTTTTCAGTCAGCAGAATCAGTATGGTAGTTTTTCCATGATTAGTAATGCTTTGTTGGAACCAAATATAGAAAGTAAAACAAGAAAAATGAAAATTATGTGTCACTCTCATCCTTCATGAGCTAATGCACAAATCAAATCAATTGTGTCGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTAAATTTACTTTCTTTCTTATGTATGTGCTTTCAATGTTACATAGCAAAATCGGTCCCAACAAAGCTACTAAATTGAGTCCACATCATCACTCTGTCATCTTCATACTTATCTCGTCGAATCATTGATTTTTTATATGAATAAAATAACTCAAAATGCTATTACCACAATGTGATGCTATTTGCAACATCAAATAAGTAATATTTTTCGCCCTACTTTTCATGCACTCAAAATTTTTCTCCAAAACACGATTCTTTCCTTCAAAGTTCAAACTTAGGGTTTGTTTCACTGTGCAAATCAAATTAAGAACAAATCAAATTCTAATTTCATCTTATGATTTCATATCGTGATTTAAAATTGCAAATTCAAATGCCTACTTAATGTGTTTGGTCATTGGAATTAGAAACTTAAGTTTAGTGTTTGATTTGAAATGAATATTTATCTATGAATTGTAAATGTAAGTATAATTTCAAATCATCTTTTGAAATTTTACATTCTCTAAAAAGTAAATAAAATGAATTTCAAACCTTTCTTTAACTATAATTTAAAATTTTACAAAAAAAAGTCATATTTAATTAAACATTACCCGATGTCTATACCATATAAGAGGATTATATTAAAAGATAAATAATTACTATTATTGTTAATTTATTGAACTAATAAATCTTTGTGGAATTTGTGCATTTTAAATTTTATAATAATACATAATTTGAAATATATATTTATAAAAATAACATAAAAGATATACAATTTTATTAATATAATCCATAAAATACTATATTATCTTATTTATAAAGTAGTTGTTCATCCATATCATATTTGAGTCAAAGTTGAAAAGTTTTAAAAATCTTTTCATAAATTACAAATTTTTTATGTCGATTAGTAAAAACTAAAATGAAGAAAA</genome_strand>
        <mrna_strand>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTTATCCATGTCAGGACTATGGGTAATACCTCAGATGGCATTAGCAG.....................................................................................................................................................................................................................................GTCTTTTTGAGGCATTTACACTAATCAGCGAGAACGAGTTTTTTTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTTTTTTTTGTTGGAATGGGGGGGTCGAGTTATTTGAGCAGTTTTTTGACATCAGTTGTTCATAAAACATCAAGTTGGTTGGGTGAGGACCTTAACAAGGGGAAATTAGACTTTTTTTATTACCTCATTGCAGGACTAAAAATTTTGAATTTGGGTTATTTTTTTGTGTGGGCAAAATGGGACAAGTATAAAGGAAGGGCAGGGGGCAACAAAGTGAGTGAAAAAACAGATCAAAATGAAATTGTAATTTAATTTTTCAGTCAGCAAAATCAGTATGGTAGTTTTTCCATGATTAGTAAAGCTTTGTTGGAACCCAATATAGAAAGTAAAACAAAAAAAATGAAAATTATGGGTCCCTTTCATCCTTCATGAGGTAATGCCCAAATCAAATCAATTGTGTTGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540707" ref_strand="+" ref_description="SGN-E540707 [TUS-61-B23]">
      <seq>gttttaagacaagttcgatgagacttggggctgacgttgttgtcttcagccgctgtatgaagaacaggaaattgatgcagagtgtcggtcttctctcttttacatttttgacacgagcaggccttgacagaatagtggtgcccatgattgaatatgagttcatgtcttcaactagcaaatggacttcaatctgcagtgaacagcgttttgtgaacaatctcccattgttgttgcagtggtctcccttttcaactgaggaagagcttcttaagcaatttgatagcatcggtgatcatggctcgaatatcattatctacattttgtggttaaatgatgaaggagaaatggagctcgacttttactcagaccctgaggatattcgtatctcttgtgatgcagaaagtggtaaaagttgttcccgtattgcgaaaagggacctgcagcttgccaacactcttcgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="102056" stop="107947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102356" g_stop="102422" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102423" i_stop="104588" i_length="2166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104589" g_stop="104667" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="146" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104668" i_stop="105825" i_length="1158">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105826" g_stop="105954" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="275" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105955" i_stop="107365" i_length="1411">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107366" g_stop="107464" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="374" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107465" i_stop="107556" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107557" g_stop="107647" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="465" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E540707" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102356" e_stop="102422"/>
          <exon e_start="104589" e_stop="104667"/>
          <exon e_start="105826" e_stop="105954"/>
          <exon e_start="107366" e_stop="107464"/>
          <exon e_start="107557" e_stop="107647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAGGTTTGATACCAGTGAACTATAATTGCACGTGCTGTATACTTTTTTTTCTTTTGACCTGAGAGAACTTTACACTATTGAGCAGTCAATAGTGTGGCGTGTCTCTTCCTTTAGGTTATGCAGTTAGTTGGAGAGATATGCTGATGTATCTCTACACAGCATTGCAACTTTGTATAATAGGCGTTTATGGTCTTGTGTTCGACATAATAATGTTGATTTCTGACTTGTTCAAGTGAAGGAAGAAGCTTCCTACTTGTGCTCCTTGAAGGAGTTGAAATTAGGGGGTAGTATTTTGCTTTCAACTGCTTGTTAGTTTGGTTTGATCTGTTACTGGTTTAAGGGTTGTTATTAAAACCACCATTTCACCTCTTAGAGCGATGGAAGTAATGTGAAGCAAGGAGTAATCCTTCATGGGTGAACTCATACACGCTTCAAAGAAGTGTGCACTTCAAATAATGATGCACAAATGATCTCAACAAGAAGGCGATCTATTTCTTAAATTGTAGTTATCTTAATTGCAATTTGATTATTATTGTACGGAAAACAACTATTTTTATCTGACTTTGGCGAAATTCATTGATGTCTCACTCAAAGTTAGACACTTTTTTTGTCAATGATCAAATTGACATCTCTTCTTAGAGGAAGTGTGTGTGAAGTGCGAATGCTGCTGTTGTGTCAAACAAAAAAATAAGTGATCGACAAGTGTATAAAAAAAAGTAATTGTCACTTTGATTATTACTTTTTTCTTAAAGAAAAAGAGTACTCCCATCCCCGCCCCCCTCTTCTTCTTTTTTTTTTTTTTTTGAAACTGGTTATGTTGTATTCCTCAACATTAAGGATATGCTGTGGAGACGCTCAAAAGAGGAACCCCCCAAAAAAAAAGAGAAGGGGAGAAACTACTTACAGAGAGCCTAACAGATCTATCCCCCATTTCTTCTTCCAAGATTAGCCCCCTCTCCCTGCCAATGCTCGTCCCTTTGCTCCACCCGCCTCGTCCCCCTCTTCTCCGCTCCTCCTTCCCCTCCCTGCCTCTAGTCTTCTTTCAAAATCAACTCCCTGTTATTGTTCTTCTCCTTTCCCCCTCCACCCTTGCTGCGGATATGTTTATTTGGGTGAAAATATGTGGTGGATGTAATTTGTTAGGATGGTGGCCAGAGGGTGATATGCAAGCTATGGGCGTGGTTGGGTGGTGGCCAGAGGGTGTTGGTTTTGGGGCGAAGAAGTGGAGTTCACACGGAAAAAAATAATGTAAGGGTCTTCATGCGCCTGAGGTTGACTGGAAAATACAATTTTTGCTATTCAGCATGAGGGGTTCACGGTCACACTTCTGCCGAGAAGTGTCTTGTCATGGGTAAAGTTTAGGTGTTCTAAATGGTATTTGGTGTCAAAATAGAGTCTTTATACATGTATTTTACCTATTCTTATTTTGTAAGTTATGTGCTTTACTTCAACGAAGCATATACTTCACTTCTCGCTTTCCATTTCAAGCCGTCGGAGCCATGTCGCTTCTTTGTGCAAAACAAGAAAATTGGATTTAAGAGTTCCAGGACAAACTCTTTCACCAAATTAACTTGAGACCACATTGAAGTTTGTCATAAGTTTTAGGAATTAAAGGTATTGTTTTCTCTCTCGCTTGCTTCTTCTTATTTATCCGTTCTCTTTTTAGATATCTATTTTGCACTTGTGGAGAAGAAGTGAAAAAGAGGTTCACTGTCGAAGTGAGATTTATTTTGCTTTAGGATAACTCAACACAGGAAAGAATTTTCTTTTATAAAAAAGGTGAACGTACACTTTGAGATGCACTAGTCTCAGTAGAGATGTTACTCCTTCCACCTCAAAGTTTTCTTTTTGGAAAAAAAAAATTGAGATGGAGGGAGTAAGTATCTCTTCTTGGGAGTCTTGGGACTGGTAGCATTTAAAAAGCAGAAAGGATTGCTCTTTCTTCTCTTCCTTTGAATACCTAGGGGATGCCACTCTACCTTAGGCTATTCCTCCTTTGGAACATGGAGTTATTGTTTTCTTTTCTATTTCCTGAATGTTCAGTTTATGTAAGATACATATATCCATTCTAACAGTGAATGAAAGCAGCATCATTTTTGGTCCAGTGAGTTTCTGACTGTCTCTTTTGAACATTAACTTTTTATTTCTTTACATTGCTACTGTGAGCAGGAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATGGTGAGCCTTTTCATTTGCCTTTCAAAGCATTTTGGTGTAATCTATAAATAATTGGATTTGTTATTTGATCTACAAACATTTATTTATTCTGAAAATCCCATTCAGTCCCTTTTTTTCTCAAGACAGTCCCTTCCTTTTTTTATGTTCTCAGCACGCCTGCGACAACTTGAGCAGTGGTACTTGTGTATTTGTGGTTTCGTTGAATTCGTAAAATTTACCTTTAGAATGTAGGTGTAAGTTTTACCTTGTCCATATCCTTTTAAATTGTTTGGGATGCAATCTCTTATAGACTACCCTCGCCAATAGGAGTGGCTCGAGGGCAAGGCAAATGAAGTCATTGCCTTATGCCGCAAAAGTTAAAAGGCCCATGTACTAGTATATGCAATGTAATTTGTATAACAATTTGACAATCTTTAGAGATAAAAAAAAACAAAAGGATCAACTGGAATAACAAGGTTTAGCCATGTAATTTATTTGCTTCCTACTTTTGAGTCTATTTCATGTATTACTTCATTTACATGCAACTTGCATTACCAAAGTGAAAAAAGTTGTTTGCACGCAACAACAACAATCCCAGTGTAATCCCACATGTGGGGTCTAAGGAGGGTAGAGTGTACACATACCTTAACCCCTACCTTGAGAAGGTAGAGGCTGTTTCTGAAAGTTCCTCTGCTCAAAGAACGATAAAAAAGAGACATTAGCAACAAGCAGAAACAACATCAAGATAATAAGATAACCGAGGTTAAAGGAACAACATGTAGAAATAGAAATTGAAAAATAATGAAAAACAAGAACAATACTGGTACACAGGGAAAGGAAAAGAAATTTGCCCGACTACCTACTAAACCCTGTACCTTAATTTTCAACCTCCACATCCTCATATCAAGGTCATGTCCTCGATAAGCTGCAGTTGTGCCATATCCTGCCTAATCACTTCACTTTAATACTTCTTTGGCTTAGCCTCCCCTCCCTCCCTTAAGCCCATGACAACCAACCACTCACACCTCCTAACCGGGGCACATCTTATCCTCCTCAGGGTGAAGCCAAATTTGTAATTTGAGGAGGGAAATGATTGTAGAATGTTGAAAGTTGACCAACTCTTTAGTGGCTAGTCAGTTGCCAGTCAATTATTTTAACTTCTTTGCTCATATGATACAGATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAAGTGAGTCTAGACCTGCATCAAATTTGCCTGTTCTTTTTTTTAAAAAAAATATTTTTAAGATGAAGTAATTGATTCCATACATGGCATCAACAAGATGAAAAGTAGTTGCAAAAGAGTGAGTACTAGTATGTTATCTCTAGTACACTATCATAGAGCAAACAAAATCTAAAAAGCTATCAGGGGAATCCACTGGGGACAAAAAAAAACCTTACTGTATAAATACAAAAGACATTTACTTTGAGCATAGATTGGCTAGTTGAGACTTGAGAGGGCATCAAAACATCTTCTATTTCTTTCGTTCATGATAGTCCAAAAAATGACATCTTGTATCATCTTCCAAATTCTTTTGATGGTGCTGTCAACTTTACAGTGGCTCCAGCATCAAAACTTCCCTGATAGTGTTAGCCATAACCATCTGAGGCCAAAAAGGGTGAGGAACATGTACCATAAGTCTGCAGCAGCCGGACACTGCAGAAACGGACGGCTATGAGTTTCTGCTTCTCTGTTGTACATGTGGCATCTATTCACTATCTAAATCTTCCTCCTTTTACAGTTGTCCTGTGTTAGATTGGCTTTATGCATTGCCCTTATTTATATTCCGTGTAATAATCCATGAAATTCAGATTTATCTTGTATTAGAAATTCTTCCATATACAGAACGTGTAATTAATTATAGTTATGCTGATGGTGTTTTGGTTATGTTAGAGTGATTTGACATGTAAGAGAGGGCTAGAGTGTGTGGAATAGCAAAAGGGCATGTGACTAGGGGAACATCTGGTGCATGAGTTAGAACATCTAAACACGTGCTTTCTTGTCATTATGAAAATGTGTTCTGGTTCTTCTTCCTTTGGTGCTTGAAAAATTCAGGATGTCATGGTGGGTTTGATACTCAGATTCTAGAGTCTATTTGAAACTGTTCACACTGAAAGTTGCCTTGGGCTAGTTACTTCACTATTCTATTCATGGACTGTCTTCATCTCTAAGCACTTCATCAGAATGAATGTTTAAATACTTACCTTATCCATTGACTAGCTGTCTTAGATTTAGGTGTTGGAGGGCCTGATTTTGTTACCGTTCTAAGTTTCCTGGATGGCTGAATCTATATTGATTAGATGAAACATTGTATTTTCTATATTCTCATGATATCGTTCTAGAGAATTTTCTATCTGAATGCTAAAGGAGAGTGTATAATATTGGAATTTGACATGTAAGAAAGAATAGAGGGGGGTTTGGGACTGGAAGGCATGTGAGCTGGGAATCTGTCATGAATAACTTAGAGATCCTATAAATTTTGTTGCAGAAGTCGTTCTGGATCTTAATATTCTGAGTTATGTCTATTTGATTCTTTTTATATGTGTTACTATTGTTGATATAACCTTTTTTTAGCCAACCATTTATTTTCCCTTCACAGTTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAGGTTTGATCTCTTCTTTCTAAATTAATTTTCGCATTTGAAATTTCTAGCATTGTTACTTACCATAATAGGATTACTTCTATTACAATAAGCAGGATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATT</genome_strand>
        <mrna_strand>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGATGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTGCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATGAGTTCATGTCTTCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCGTTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGCATCGGTGATCATGGCTCGAATATCATTATCTACATTTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG............................................................................................GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATTGCGAAAAGGGACCTGCAGCTTGCCAACACTCTTCGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291524" ref_strand="+" ref_description="SGN-E291524 [cLET-6-K15]">
      <seq>acaagttcgatgagacttggggctgacgtgggtgtcttcagccgctgtatgaagaacaggaaattgacgcagagtgtcggtcttctctcttttacatttttgacacgagcaggccttgacagaatagtggtacctatgattgaatatgagttcatgtcagcaactagcaaatggacttcaatctgcagtgaacagcattttgtgaacaatctcccattgttgttgcagtggtctcccttttcaactgaggaagagcttcttaagcaatttgatagcatcggtgatcatggcacgaagatcataatctacaatttgtggttaaatgatgaaggagaaatggagctcgacttttactcagaccctgaggatattcgtatctcttgtgatgcagaaagtggtaaaagttgctcccgtatgtcagtaagtgacctgcatcttgccaacactcttcgatattcactccgagcatatttatctatcttgtacttgcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="102064" stop="107983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102364" g_stop="102422" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102423" i_stop="104588" i_length="2166">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104589" g_stop="104667" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="138" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104668" i_stop="105825" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105826" g_stop="105954" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="267" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105955" i_stop="107365" i_length="1411">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107366" g_stop="107464" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="366" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107465" i_stop="107556" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107557" g_stop="107655" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="465" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107656" i_stop="107744" i_length="89">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107745" g_stop="107773" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="494" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E291524" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102364" e_stop="102422"/>
          <exon e_start="104589" e_stop="104667"/>
          <exon e_start="105826" e_stop="105954"/>
          <exon e_start="107366" e_stop="107464"/>
          <exon e_start="107557" e_stop="107655"/>
          <exon e_start="107745" e_stop="107773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAGGTTTGATACCAGTGAACTATAATTGCACGTGCTGTATACTTTTTTTTCTTTTGACCTGAGAGAACTTTACACTATTGAGCAGTCAATAGTGTGGCGTGTCTCTTCCTTTAGGTTATGCAGTTAGTTGGAGAGATATGCTGATGTATCTCTACACAGCATTGCAACTTTGTATAATAGGCGTTTATGGTCTTGTGTTCGACATAATAATGTTGATTTCTGACTTGTTCAAGTGAAGGAAGAAGCTTCCTACTTGTGCTCCTTGAAGGAGTTGAAATTAGGGGGTAGTATTTTGCTTTCAACTGCTTGTTAGTTTGGTTTGATCTGTTACTGGTTTAAGGGTTGTTATTAAAACCACCATTTCACCTCTTAGAGCGATGGAAGTAATGTGAAGCAAGGAGTAATCCTTCATGGGTGAACTCATACACGCTTCAAAGAAGTGTGCACTTCAAATAATGATGCACAAATGATCTCAACAAGAAGGCGATCTATTTCTTAAATTGTAGTTATCTTAATTGCAATTTGATTATTATTGTACGGAAAACAACTATTTTTATCTGACTTTGGCGAAATTCATTGATGTCTCACTCAAAGTTAGACACTTTTTTTGTCAATGATCAAATTGACATCTCTTCTTAGAGGAAGTGTGTGTGAAGTGCGAATGCTGCTGTTGTGTCAAACAAAAAAATAAGTGATCGACAAGTGTATAAAAAAAAGTAATTGTCACTTTGATTATTACTTTTTTCTTAAAGAAAAAGAGTACTCCCATCCCCGCCCCCCTCTTCTTCTTTTTTTTTTTTTTTTGAAACTGGTTATGTTGTATTCCTCAACATTAAGGATATGCTGTGGAGACGCTCAAAAGAGGAACCCCCCAAAAAAAAAGAGAAGGGGAGAAACTACTTACAGAGAGCCTAACAGATCTATCCCCCATTTCTTCTTCCAAGATTAGCCCCCTCTCCCTGCCAATGCTCGTCCCTTTGCTCCACCCGCCTCGTCCCCCTCTTCTCCGCTCCTCCTTCCCCTCCCTGCCTCTAGTCTTCTTTCAAAATCAACTCCCTGTTATTGTTCTTCTCCTTTCCCCCTCCACCCTTGCTGCGGATATGTTTATTTGGGTGAAAATATGTGGTGGATGTAATTTGTTAGGATGGTGGCCAGAGGGTGATATGCAAGCTATGGGCGTGGTTGGGTGGTGGCCAGAGGGTGTTGGTTTTGGGGCGAAGAAGTGGAGTTCACACGGAAAAAAATAATGTAAGGGTCTTCATGCGCCTGAGGTTGACTGGAAAATACAATTTTTGCTATTCAGCATGAGGGGTTCACGGTCACACTTCTGCCGAGAAGTGTCTTGTCATGGGTAAAGTTTAGGTGTTCTAAATGGTATTTGGTGTCAAAATAGAGTCTTTATACATGTATTTTACCTATTCTTATTTTGTAAGTTATGTGCTTTACTTCAACGAAGCATATACTTCACTTCTCGCTTTCCATTTCAAGCCGTCGGAGCCATGTCGCTTCTTTGTGCAAAACAAGAAAATTGGATTTAAGAGTTCCAGGACAAACTCTTTCACCAAATTAACTTGAGACCACATTGAAGTTTGTCATAAGTTTTAGGAATTAAAGGTATTGTTTTCTCTCTCGCTTGCTTCTTCTTATTTATCCGTTCTCTTTTTAGATATCTATTTTGCACTTGTGGAGAAGAAGTGAAAAAGAGGTTCACTGTCGAAGTGAGATTTATTTTGCTTTAGGATAACTCAACACAGGAAAGAATTTTCTTTTATAAAAAAGGTGAACGTACACTTTGAGATGCACTAGTCTCAGTAGAGATGTTACTCCTTCCACCTCAAAGTTTTCTTTTTGGAAAAAAAAAATTGAGATGGAGGGAGTAAGTATCTCTTCTTGGGAGTCTTGGGACTGGTAGCATTTAAAAAGCAGAAAGGATTGCTCTTTCTTCTCTTCCTTTGAATACCTAGGGGATGCCACTCTACCTTAGGCTATTCCTCCTTTGGAACATGGAGTTATTGTTTTCTTTTCTATTTCCTGAATGTTCAGTTTATGTAAGATACATATATCCATTCTAACAGTGAATGAAAGCAGCATCATTTTTGGTCCAGTGAGTTTCTGACTGTCTCTTTTGAACATTAACTTTTTATTTCTTTACATTGCTACTGTGAGCAGGAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATGGTGAGCCTTTTCATTTGCCTTTCAAAGCATTTTGGTGTAATCTATAAATAATTGGATTTGTTATTTGATCTACAAACATTTATTTATTCTGAAAATCCCATTCAGTCCCTTTTTTTCTCAAGACAGTCCCTTCCTTTTTTTATGTTCTCAGCACGCCTGCGACAACTTGAGCAGTGGTACTTGTGTATTTGTGGTTTCGTTGAATTCGTAAAATTTACCTTTAGAATGTAGGTGTAAGTTTTACCTTGTCCATATCCTTTTAAATTGTTTGGGATGCAATCTCTTATAGACTACCCTCGCCAATAGGAGTGGCTCGAGGGCAAGGCAAATGAAGTCATTGCCTTATGCCGCAAAAGTTAAAAGGCCCATGTACTAGTATATGCAATGTAATTTGTATAACAATTTGACAATCTTTAGAGATAAAAAAAAACAAAAGGATCAACTGGAATAACAAGGTTTAGCCATGTAATTTATTTGCTTCCTACTTTTGAGTCTATTTCATGTATTACTTCATTTACATGCAACTTGCATTACCAAAGTGAAAAAAGTTGTTTGCACGCAACAACAACAATCCCAGTGTAATCCCACATGTGGGGTCTAAGGAGGGTAGAGTGTACACATACCTTAACCCCTACCTTGAGAAGGTAGAGGCTGTTTCTGAAAGTTCCTCTGCTCAAAGAACGATAAAAAAGAGACATTAGCAACAAGCAGAAACAACATCAAGATAATAAGATAACCGAGGTTAAAGGAACAACATGTAGAAATAGAAATTGAAAAATAATGAAAAACAAGAACAATACTGGTACACAGGGAAAGGAAAAGAAATTTGCCCGACTACCTACTAAACCCTGTACCTTAATTTTCAACCTCCACATCCTCATATCAAGGTCATGTCCTCGATAAGCTGCAGTTGTGCCATATCCTGCCTAATCACTTCACTTTAATACTTCTTTGGCTTAGCCTCCCCTCCCTCCCTTAAGCCCATGACAACCAACCACTCACACCTCCTAACCGGGGCACATCTTATCCTCCTCAGGGTGAAGCCAAATTTGTAATTTGAGGAGGGAAATGATTGTAGAATGTTGAAAGTTGACCAACTCTTTAGTGGCTAGTCAGTTGCCAGTCAATTATTTTAACTTCTTTGCTCATATGATACAGATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAAGTGAGTCTAGACCTGCATCAAATTTGCCTGTTCTTTTTTTTAAAAAAAATATTTTTAAGATGAAGTAATTGATTCCATACATGGCATCAACAAGATGAAAAGTAGTTGCAAAAGAGTGAGTACTAGTATGTTATCTCTAGTACACTATCATAGAGCAAACAAAATCTAAAAAGCTATCAGGGGAATCCACTGGGGACAAAAAAAAACCTTACTGTATAAATACAAAAGACATTTACTTTGAGCATAGATTGGCTAGTTGAGACTTGAGAGGGCATCAAAACATCTTCTATTTCTTTCGTTCATGATAGTCCAAAAAATGACATCTTGTATCATCTTCCAAATTCTTTTGATGGTGCTGTCAACTTTACAGTGGCTCCAGCATCAAAACTTCCCTGATAGTGTTAGCCATAACCATCTGAGGCCAAAAAGGGTGAGGAACATGTACCATAAGTCTGCAGCAGCCGGACACTGCAGAAACGGACGGCTATGAGTTTCTGCTTCTCTGTTGTACATGTGGCATCTATTCACTATCTAAATCTTCCTCCTTTTACAGTTGTCCTGTGTTAGATTGGCTTTATGCATTGCCCTTATTTATATTCCGTGTAATAATCCATGAAATTCAGATTTATCTTGTATTAGAAATTCTTCCATATACAGAACGTGTAATTAATTATAGTTATGCTGATGGTGTTTTGGTTATGTTAGAGTGATTTGACATGTAAGAGAGGGCTAGAGTGTGTGGAATAGCAAAAGGGCATGTGACTAGGGGAACATCTGGTGCATGAGTTAGAACATCTAAACACGTGCTTTCTTGTCATTATGAAAATGTGTTCTGGTTCTTCTTCCTTTGGTGCTTGAAAAATTCAGGATGTCATGGTGGGTTTGATACTCAGATTCTAGAGTCTATTTGAAACTGTTCACACTGAAAGTTGCCTTGGGCTAGTTACTTCACTATTCTATTCATGGACTGTCTTCATCTCTAAGCACTTCATCAGAATGAATGTTTAAATACTTACCTTATCCATTGACTAGCTGTCTTAGATTTAGGTGTTGGAGGGCCTGATTTTGTTACCGTTCTAAGTTTCCTGGATGGCTGAATCTATATTGATTAGATGAAACATTGTATTTTCTATATTCTCATGATATCGTTCTAGAGAATTTTCTATCTGAATGCTAAAGGAGAGTGTATAATATTGGAATTTGACATGTAAGAAAGAATAGAGGGGGGTTTGGGACTGGAAGGCATGTGAGCTGGGAATCTGTCATGAATAACTTAGAGATCCTATAAATTTTGTTGCAGAAGTCGTTCTGGATCTTAATATTCTGAGTTATGTCTATTTGATTCTTTTTATATGTGTTACTATTGTTGATATAACCTTTTTTTAGCCAACCATTTATTTTCCCTTCACAGTTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAGGTTTGATCTCTTCTTTCTAAATTAATTTTCGCATTTGAAATTTCTAGCATTGTTACTTACCATAATAGGATTACTTCTATTACAATAAGCAGGATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGAGTAAGTTCTTTAATGATCAAGATGCACTTGAAGTTTCTTCATTCAAGGAGATCCCTACTTTCTAACTCTTTTGTGTTCTCTTTTAACAGGCATATTTATCTATCTTGTACTTGCGAAT</genome_strand>
        <mrna_strand>ACAAGTTCGATGAGACTTGGGGCTGACGTGGGTGTCTTCAGCCGCTGTATGAAGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG............................................................................................GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGCTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGA.........................................................................................GCATATTTATCTATCTTGTACTTGCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540076" ref_strand="+" ref_description="SGN-E540076 [TUS-60-C17](-)">
      <seq>caactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgagaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttctaaatctttttgtaaatttatatttttggtttacaaaaaaattccatggcaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="109007" stop="134536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109307" g_stop="109391" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109686" g_stop="109774" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110231" g_stop="110337" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110495" g_stop="110574" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111553" g_stop="111595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="404" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111764" g_stop="111948" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="589" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111949" i_stop="112214" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.347" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112215" g_stop="112247" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="622" r_length="33" r_score="0.485"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E540076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109307" e_stop="109391"/>
          <exon e_start="109686" e_stop="109774"/>
          <exon e_start="110231" e_stop="110337"/>
          <exon e_start="110495" e_stop="110574"/>
          <exon e_start="111553" e_stop="111595"/>
          <exon e_start="111764" e_stop="111948"/>
          <exon e_start="112215" e_stop="112247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATGTCATGGTTCAAACCCCAATCATAGAAACAACTCTCGATATTATTTGGTCCTTGTGCATAGCGAGAGTTTAGTACACCAGGTAACTCTTTAGTTGTCGTGTTCATGTGTTAGAGAAGAAAAGTAAAGCAAAATTAGTGATCTTGG</genome_strand>
        <mrna_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGC..........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540079" ref_strand="+" ref_description="SGN-E540079 [TUS-60-C17]">
      <seq>caactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgagaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttctaaatctttttgtaaatttatatttttggtttacaaaaaaattccatggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="109007" stop="112249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109307" g_stop="109391" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109686" g_stop="109774" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110231" g_stop="110337" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110495" g_stop="110574" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111553" g_stop="111595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="404" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111764" g_stop="111950" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="591" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111951" i_stop="112214" i_length="264">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.347" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112215" g_stop="112222" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="599" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E540079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109307" e_stop="109391"/>
          <exon e_start="109686" e_stop="109774"/>
          <exon e_start="110231" e_stop="110337"/>
          <exon e_start="110495" e_stop="110574"/>
          <exon e_start="111553" e_stop="111595"/>
          <exon e_start="111764" e_stop="111950"/>
          <exon e_start="112215" e_stop="112222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATGTCATGGTTCAAACCCCAATCATAGAAACAACTCTCGATATTATTTGGTCCTTGTGCATAGCGAGAGTTTAGTACACCAGGTAACTCTTTAGTTGTCGTGTTCATGTGTTAGAGAAGAAA</genome_strand>
        <mrna_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCAA........................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287644" ref_strand="+" ref_description="SGN-E287644 [cLES-9-O23]">
      <seq>aactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="109008" stop="111868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109308" g_stop="109391" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109686" g_stop="109774" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="173" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110231" g_stop="110337" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="280" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110495" g_stop="110574" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="360" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111553" g_stop="111568" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="376" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E287644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109308" e_stop="109391"/>
          <exon e_start="109686" e_stop="109774"/>
          <exon e_start="110231" e_stop="110337"/>
          <exon e_start="110495" e_stop="110574"/>
          <exon e_start="111553" e_stop="111568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAG</genome_strand>
        <mrna_strand>AACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540705" ref_strand="+" ref_description="SGN-E540705 [TUS-61-B23](-)">
      <seq>agagatgacatgggagtactgggaccatcactgtggattaatgggttatcatgcagctaaacagcttcgtgcacgttgtcaggattcaccccaatctagaaagagacatgcaaccgcaaaaaggaaaagctgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccagtatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgacgaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttgtaaatctttttgtaaatttatatttttggtctacaaaaaaattccatggcatgtgcttgttagaatggagggctaatgatctctcccatgttgcctgccctttttcaacttctgccggaggaagttatttccgtttttgtcataatgtgcttaggacaatgttgtcttggcgcaatagtaaagttgtagttatgtgactaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="109071" stop="112401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109371" g_stop="109391" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109686" g_stop="109774" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456">
            <donor d_prob="0.589" d_score="0.92"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110231" g_stop="110337" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="217" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110495" g_stop="110574" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="297" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111553" g_stop="111595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="341" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111764" g_stop="112100" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="678" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112101" i_stop="112214" i_length="114">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.347" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112215" g_stop="112222" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="686" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E540705" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109371" e_stop="109391"/>
          <exon e_start="109686" e_stop="109774"/>
          <exon e_start="110231" e_stop="110337"/>
          <exon e_start="110495" e_stop="110574"/>
          <exon e_start="111553" e_stop="111595"/>
          <exon e_start="111764" e_stop="112100"/>
          <exon e_start="112215" e_stop="112222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGA-GAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATGTCATGGTTCAAACCCCAATCATAGAAACAACTCTCGATATTATTTGGTCCTTGTGCATAGCGAGAGTTTAGTACACCAGGTAACTCTTTAGTTGTCGTGTTCATGTGTTAGAGAAGAAA</genome_strand>
        <mrna_strand>AGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATGGGTTATCATGCAGCTAAACAGCTTCGTGCACGTTGTCAGGATTCACCCCAATCTAGAAAGAGACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAGCTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCAGTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGACGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTGTAAATCTTTTTGTAAATTTATATTTTTGGTCTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAAA..................................................................................................................AAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335127" ref_strand="+" ref_description="SGN-E335127 [cTOE-1-E22]">
      <seq>agtagtagtaattctaagtcattttcaaccattttttcacttgttgggtttcttgtttcttgcttctaccatttgctacctgtcatctcagacccaactgtacaacattcaaaccaaacttttaaaccaaagcaagagttgatcaaactcaagagattaagggacttatctcaagaaccatcaataagccagcagttaagacaattcagagttcagatggagatctaatagattgtgtattatctcatcttcaaccagcttttgatcatcctcaactcaaaggaatgaagccattggaacctccaactaggcctaaatcgaatgaatcaacagaaattaggagctatcagttgtggagagtttcaggagaatcgtgccccgaagggacagttccaataagaagaactacagagaaagatgttatgagagctagtactttacaaagatttggaaaaaattataagaggcgtaaggcgcgacacaatgagcaatgatcatgagcatgcaatagcatttgtgaatggtgaagaatattatggtgcaaaggctagtattagtgtatggacaccaaaagtaacagaccaatatgaattcagtttgtcacaactatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="122072" stop="123642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122372" g_stop="122575" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122576" i_stop="122682" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122683" g_stop="122769" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="296" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122770" i_stop="122933" i_length="164">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122934" g_stop="123140" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="501" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123141" i_stop="123229" i_length="89">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123230" g_stop="123342" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="614" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E335127" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122372" e_stop="122575"/>
          <exon e_start="122683" e_stop="122769"/>
          <exon e_start="122934" e_stop="123140"/>
          <exon e_start="123230" e_stop="123342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTAGTAATTCTAAGTCATTTTCAATCATTTTTTCATTTGTT-GGTTTCTTGTTTCTTGCTTCTA-CATTTGCTA-CTGTCATCTCAGATCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAA-GGACTTATCTCAAGAA-CATCAATAAGCCAGCAGTTAAGACAATTCAGGCAAGTTATCTTTTTCCTCAAAATTAAAGTTTTAATCTTTTTTCATTAATCAAGATTCTGAAAATAATGATACCCCTTTGTTTTTTTGTTTTTTTTTGTGATTGTAGAGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTGGTAGTAGTTTTATATATATATAAAAGTTGTCGAATCCTCATTGTATAATAGCTTTTAGCCCTCGTATTTAAATTTCTAGCTCCGCCACTGAACATGAGAAATACTCGAGGCTTAAAAGTGCAGAACTCATTCACTCTAAATTTTGGATTTTTGACTGAATGTAGGAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGGAAAAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAGGTTTGTTTGTGTGTATATGTAGATTTAGTCTAAATTTGAAAGACGAATATTGTACCTGATATGTTTCGATTCATAATTGTAATTTGCAGCATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</genome_strand>
        <mrna_strand>AGTAGTAGTAATTCTAAGTCATTTTCAACCATTTTTTCACTTGTTGGGTTTCTTGTTTCTTGCTTCTACCATTTGCTACCTGTCATCTCAGACCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAAGGGACTTATCTCAAGAACCATCAATAAGCCAGCAGTTAAGACAATTCAG...........................................................................................................AGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTG....................................................................................................................................................................GAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGG--AAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAG.........................................................................................CATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549740" ref_strand="+" ref_description="SGN-E549740 [TUS-6-L11]">
      <seq>aagagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaatagaggaggctactgggtggtacaataaggtgcttggtttacgtattgaatgtggccttggagtaaaattcatctttaccaatataaatgcgaataatccagatgatgagtactcttttactgttcgtcgtgagaatgatgcacatactttgattgattgtgatccacagctgaatgacgcaaaagaactgattattgagttaaataaaagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="125304" stop="127458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125604" g_stop="125780" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125781" i_stop="126039" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126040" g_stop="126105" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126106" i_stop="126225" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126226" g_stop="126372" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="390" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126373" i_stop="126654" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126655" g_stop="126768" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="504" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126769" i_stop="126924" i_length="156">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126925" g_stop="127014" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="594" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127093" g_stop="127158" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="660" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E549740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125604" e_stop="125780"/>
          <exon e_start="126040" e_stop="126105"/>
          <exon e_start="126226" e_stop="126372"/>
          <exon e_start="126655" e_stop="126768"/>
          <exon e_start="126925" e_stop="127014"/>
          <exon e_start="127093" e_stop="127158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTGGTATGTCGAATCTTCTCTGCTAGACACTTTTGAGCATACTACGGCAAATATTTTCTTGCCGAACATGCTTTATAATAAAGAACAGATTTCTATACAGATTGTGAACTCTAATACAGATACAATTCTTTGACCATTCACGGCCTACATTCTCTGCAGGAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTTGTAAGTTTGGTCTTGGTCAACTTTAATAAATTGAAGGTAGTTCTGAATGATAATTCTTTCCTTTGTTTGAATTGTTAGTGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATG</genome_strand>
        <mrna_strand>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG............................................................................................................................................................GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT..............................................................................TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369115" ref_strand="+" ref_description="SGN-E369115 [TUS-23-K2]">
      <seq>agagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaatagaggaggctactgggtggtacaataaggtgcttggtttacgtattgaatgtggccttggagtaaaattcatctttaccaatataaatgcgaataattcagatgatgagtactcttttactgttcgtcgtgagaatgatgcacatactttgattgattgtgatccacagctgaatgacgcanaagaactgattattgagttaaataaaagcatggaatgttcaagtttgtcaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="125305" stop="127480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125605" g_stop="125780" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125781" i_stop="126039" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126040" g_stop="126105" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="242" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126106" i_stop="126225" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126226" g_stop="126372" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="389" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126373" i_stop="126654" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126655" g_stop="126768" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="503" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126769" i_stop="126924" i_length="156">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126925" g_stop="127014" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="593" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127093" g_stop="127180" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="680" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E369115" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125605" e_stop="125780"/>
          <exon e_start="126040" e_stop="126105"/>
          <exon e_start="126226" e_stop="126372"/>
          <exon e_start="126655" e_stop="126768"/>
          <exon e_start="126925" e_stop="127014"/>
          <exon e_start="127093" e_stop="127180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTGGTATGTCGAATCTTCTCTGCTAGACACTTTTGAGCATACTACGGCAAATATTTTCTTGCCGAACATGCTTTATAATAAAGAACAGATTTCTATACAGATTGTGAACTCTAATACAGATACAATTCTTTGACCATTCACGGCCTACATTCTCTGCAGGAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTTGTAAGTTTGGTCTTGGTCAACTTTAATAAATTGAAGGTAGTTCTGAATGATAATTCTTTCCTTTGTTTGAATTGTTAGTGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGAC</genome_strand>
        <mrna_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG............................................................................................................................................................GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATTCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT..............................................................................TGATTGATTGTGATCCACAGCTGAATGACGCANAAGAACTGATTATTGAGTTAAATAAAAGC-ATGGAATGTTCAAGTTTGTCAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246272" ref_strand="+" ref_description="SGN-E246272 [cLEF-40-G14]">
      <seq>agagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="125305" stop="127009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125605" g_stop="125780" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125781" i_stop="126039" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126040" g_stop="126105" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="242" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126106" i_stop="126225" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126226" g_stop="126372" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="389" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126373" i_stop="126654" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126655" g_stop="126709" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="444" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E246272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125605" e_stop="125780"/>
          <exon e_start="126040" e_stop="126105"/>
          <exon e_start="126226" e_stop="126372"/>
          <exon e_start="126655" e_stop="126709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAAT</genome_strand>
        <mrna_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369114" ref_strand="+" ref_description="SGN-E369114 [TUS-23-K2](-)">
      <seq>aagatcaagatacttcaaatggtctctatgcctacggtgatgtcgtccatctcaattattagtagagatgaatcttcaccccagaaagcggagcctcagtctgatgaatataagagagcttccaggaagcttgcccttggtaaaagggataggtcagccattctctctcctgtatctgcattatctcttcgcagatctcctcgttttaaggtcaataaatgataattatcagcacttctttttcatctggatttgttgaagaaccttcttgaagttgatcagtcagcatatattctcaattggcgagcactgactagcaaatactccctcttcagtttatgtatattattttcctttatagtttgtctgaaaaatgcgaccttaatatatttagtaaatttttaattctaacatcatcatgtaggaaaatcccttgtaggaatgacatgacatgtttaagacttgagattcagtagatatttttagtatgttatatacacctttagttcacgaccaatttagaagtcctttttatattcttatacttgatttttgctaaaagtatatcgttacagcttttgaattatcaattccatcctccttactgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="127156" stop="129251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127456" g_stop="127664" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127665" i_stop="128549" i_length="885">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128550" g_stop="128951" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="612" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128952" i_stop="129023" i_length="72">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129024" g_stop="129031" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="620" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E369114" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127456" e_stop="127664"/>
          <exon e_start="128550" e_stop="128951"/>
          <exon e_start="129024" e_stop="129031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAAGATACTTCA-ATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAGGTATCTTTCTGTTAACCCCAAACATATTTTGACAATTCGCTCAAATTAATACTAGTGTTTATTTATCCCTGGACTTCCTTGGAAGATGTTGAATAGATAGAAAATAAGTAGTCCATTTATTGTTGATTCTATTTATAAACACCGTGATATGAAACCACCTAAGGCAAGAAACTAATCTGAAACAAGAGAACACCTATGTTCAGAAAATTGATTTTTAAAAAATAGCCTGTGCATAGCTATATGAATCCTTGCTGAACATGTTACACTTAAACCTATCTTTGTCCATCATTATACAGAAATAAACAAGATTCAATAATTTGATAACATTTTCTGAATGTTTGTTCAAGAAAACATTTTCTGAATGATTACAGTGATAACTAACAACATACCCAGGTGTAATCCCACAAGTTGGGTCTAAGGAGGGTAGTGCGTACGCATATCTTACCCCTACCTTGGTAGATAGAGAAGTGATTTCCAAGAGACCCTAGGCTCAAGTAAAAGCAGTTCGAAAAAAAGAGATCAACGAGAGAGGAGAAGCCAAGACAATGCTAGAGAAAGCATGATAAATCATGCTAAAAGAAGGAACAACCACTACTACAAAGTAATATGATAGTCGAAGTGCAAGAAACACTAAATAGCAACACAAATGGATTACAGCTATAACAAACATTCTCACTAATTTCACTGCATTAGATGAATGATGATTACAGAAGTGAATTAACCCCAAATAATTGATTTTGTATGCCTTTTTGGGATTTTTTTTACCAGAATACACTGCTGCTTAATGAATCATCTCATAGCATCAATAAAGTCAACTAGATTGGATTTGAATACGCATGTCATATGACATGAGACCCTAATGAACAAAATTTTCTTCTTTGTCAGGTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTATATTGGTCGTGGTCTTTGAAAGAACTTAATGGTTTTTACTTCTTTTCACTTAAATCTTGTTGTATCTGTTATAGAACAGAGA</genome_strand>
        <mrna_strand>AAGATCAAGATACTTCAAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTAAA........................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549675" ref_strand="+" ref_description="SGN-E549675 [TUS-6-L11](-)">
      <seq>tataagagagcttccaggaagctagcccttggtaaaagggataggtcagccattatctctcctgtatctgcattatctcttcgcagatctcctcgttttaaggtcaataaatgataattatcagcacttctttttcatctggatttgttgaagaaccttcttgaagttgatcagtcagcatatattctcaattggcgagcactgactagcaaatactccctcttcagtttatgtatattattttcctttatagtttgtctgaaaaatgcgaccttaatatatttagtaaatttttaattctaacatcatcatgtaggaaaatcccttgtaggaatgacatgacatgtttaagacttgagattcagtagatatttttagtatgttatatacacctttagttcacgaccaatttagaagtccttttgatattcttatacttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="127263" stop="129191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127563" g_stop="127664" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127665" i_stop="128549" i_length="885">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128550" g_stop="128891" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="444" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-E549675" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127563" e_stop="127664"/>
          <exon e_start="128550" e_stop="128891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAGGTATCTTTCTGTTAACCCCAAACATATTTTGACAATTCGCTCAAATTAATACTAGTGTTTATTTATCCCTGGACTTCCTTGGAAGATGTTGAATAGATAGAAAATAAGTAGTCCATTTATTGTTGATTCTATTTATAAACACCGTGATATGAAACCACCTAAGGCAAGAAACTAATCTGAAACAAGAGAACACCTATGTTCAGAAAATTGATTTTTAAAAAATAGCCTGTGCATAGCTATATGAATCCTTGCTGAACATGTTACACTTAAACCTATCTTTGTCCATCATTATACAGAAATAAACAAGATTCAATAATTTGATAACATTTTCTGAATGTTTGTTCAAGAAAACATTTTCTGAATGATTACAGTGATAACTAACAACATACCCAGGTGTAATCCCACAAGTTGGGTCTAAGGAGGGTAGTGCGTACGCATATCTTACCCCTACCTTGGTAGATAGAGAAGTGATTTCCAAGAGACCCTAGGCTCAAGTAAAAGCAGTTCGAAAAAAAGAGATCAACGAGAGAGGAGAAGCCAAGACAATGCTAGAGAAAGCATGATAAATCATGCTAAAAGAAGGAACAACCACTACTACAAAGTAATATGATAGTCGAAGTGCAAGAAACACTAAATAGCAACACAAATGGATTACAGCTATAACAAACATTCTCACTAATTTCACTGCATTAGATGAATGATGATTACAGAAGTGAATTAACCCCAAATAATTGATTTTGTATGCCTTTTTGGGATTTTTTTTACCAGAATACACTGCTGCTTAATGAATCATCTCATAGCATCAATAAAGTCAACTAGATTGGATTTGAATACGCATGTCATATGACATGAGACCCTAATGAACAAAATTTTCTTCTTTGTCAGGTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTT</genome_strand>
        <mrna_strand>TATAAGAGAGCTTCCAGGAAGCTAGCCCTTGGTAAAAGGGATAGGTCAGCCATTATCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTGATATTCTTATACTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226966" ref_strand="+" ref_description="SGN-E226966 [cLED-1-C9](-)">
      <seq>actgttgtcaggttaagtagaaaattgatgactctcttgatcgatgtaaggctcgtttggtggccaaggttatacaaactcttatggtgtggactctggtgagacattcaatcaattggttcattcctacaactgttagactggtgttttcccttgttacctcatcttatgaatggcatattcattggtctgacattaacaatacctttcttaatggtttattgactctgactgtttatatggagcaaccaatacaagaaaaacgctatggggactcgggttggagtgtagcgtaactaagaaattcattccatttagagcgggcacgggcacgggctaggggctacgggtgggaagattggtcattagaccacgactatcatcaacttgatgcactttgtcggtcggattaatgagtgaaggacctaattattagtgactttaaaattcttttttttcttttcgaaatttgtaattacccttcattattaacatttgcggatgaatttatttttcttactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="136499" stop="135372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136199" g_stop="135669" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E226966" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136199" e_stop="135669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAATAGGA</genome_strand>
        <mrna_strand>ACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235529" ref_strand="+" ref_description="SGN-E235529 [cLED-11-J15]">
      <seq>ccttctggagactataattctagcagatttatttccttctttagtttttacttcccttcatcaactattatgagcttctaatctgctagcttacataacaaagctacaatatttcctttttggtaagtttcaaaaggcaaaaggaaaaggactagaataaaatcttggcaatatttagctacttggtcaggttagaatgaacatagaaatgtacaaaagatacctcttgcagaacattatccagttgcctcagcagtcaatctgttttcatgtgattgtattcagttgagacccttaaatcacttaggactcctttttaagaccataaaacatagagcagcaaatgcaaaactgtcggagtaactaaaagaacgagaacaaagctgatccattgatagtaagacttgctagatgcaccatttgaaataaatttgagctttatttgcgctttgtacttaaaatctcattggaccttagagctattttgcgcttttcgcttttgataacactgttgtcaggttaagtagaaaattgatgactctcttgatcgatgtaaggctcgtttggtggccaaggttatacaaactcttatggtgtggactctggtgagacattcaatcaattggttcattcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="137006" stop="135770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136706" g_stop="136070" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E235529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136706" e_stop="136070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTAC</genome_strand>
        <mrna_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226965" ref_strand="+" ref_description="SGN-E226965 [cLED-1-C9]">
      <seq>ccttctggagactataattctagcagatttatttccttctttagtttttacttcccttcatcaactattaacagcttctaatctgctagcttacataacaaagctacaatatttcctttttggtaagtttcaaaaggcaaaaggaaaaggactagaataaaatcttggcaatatttagctacttggtcaggttagaatgaacatagaaatgtacaaaagatacctcttgcagaacattatccagttgcctcagcagtcaatctgttttcatgtgattgtattcagttgagacccttaaatcacttaggactcctttttaagaccataaaacatagagcagcaaatgcaaaactgtcggagtaactaaaagaacgagaacaaagctgatccattgatagtaagacttgctagatgcaccatttgaaataaatttgagccttatttgcgctttgtacttaaaatctcattggaccttagagctattttgcgcttttcgcttttgataacactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="137006" stop="135894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136706" g_stop="136194" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E226965" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136706" e_stop="136194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTT</genome_strand>
        <mrna_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTAACAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCCTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235716" ref_strand="+" ref_description="SGN-E235716 [cLED-15-D22]">
      <seq>cccaacaccctaacagggtgaactgtaattaattgtgtcatcacaggcatatacagggaagatctgttgatgcatcactttcgcctcccaaagaattgcttgtgatccttttgtcccaacaggcggttaagttccactcaactggatacaagtttcaaggagaagtttgaaatcaaggtgataggagaaacatctctttcgcctcccaaagaattgcttgtgatctttttgccccaatagctaaagttggactcaagtgatgaaagtttcaaggagaagttcaaaatcaaggtgataggaagtttttctgggtaattcttgatacctgaagatttgggtatgaaatcaaggtcttctttgaagtatctacatcttctgtccatagaaatctcctacataggctctcaatgcaagctttctttggcaactgagaccaaaattactctacttttattgcatttggactttattttcaatttgctggttctgaaagttacggctactgagtagtttctagccttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="146503" stop="144989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146492" g_stop="146162" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146161" i_stop="145483" i_length="679">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145482" g_stop="145281" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="533" r_length="202" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E235716" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146492" e_stop="146162"/>
          <exon e_start="145482" e_stop="145281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAGGTAAAAATATCCTCATCATGTTGCTATATGTTTCTTTAGGTCTTAAGAGATGCACATTCTTCTCATTCTTATGTTTATATCGGTATTCTCTATTTCCGGAGTAGCTCTCTTTTTGTCAATAGTTCTGCATTCTGTAATTGTCAAATCACTTACACAGGGATAAACAACTTGAACAACTCATCTTTGATGAGACTTGGTTGTCTCATCTGTGTGAGATGTGATCACAATTTTGTGTTGTAGAGGACTCAGGGACAAGATAGGGTTCTCCCAACCTCACTGTTACTATACAACCTCTTATATAATATGGCCAGATAGAAGAGAAATAGAAGTTAGGAACATACATGTCTAAATTTGGTCATGGAAAAGCCTACTAAAGCTGCTCTTACAGAATTTTTGGTGGCTTGATAAAATGAAACTAACAAGTGTATAATTTTGACAAGTTTCTTAACTAACAGGCAAAATGTTGACATTTAGTATATATGTTGTGATTTCCCCCTTTCATAATTCTGTAGAGCTATGGAATCAAAATAGATAGAATTTTGAGTAGTTAATAGTATAGATAGATATTCCTGATTGAATTCCACATCCTTTTTTTTCTTTTTGCTTGCGTTCCGAAGAAGCTTACAAATTGCAGCTTTGTTTCAAGCTTGTATGTCTGATATATTGAATCCTCCTGCAGATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTCAATTTGCTGGTTCTGAAAGTTACGGCTACTGAGTAGTTTCTAGCCTTGAAATCTTAATT</genome_strand>
        <mrna_strand>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTCAATTTGCTGGTTCTGAAAGTTACGGCTACTGAGTAGTTTCTAGCCTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232896" ref_strand="+" ref_description="SGN-E232896 [cLED-8-D2]">
      <seq>cccaacaccctaacagggtgaactgtaattaattgtgtcatcacaggcatatacagggaagatctgttgatgcatcactttcgcctcccaaagaattgcttgtgatccttttgtcccaacaggcggttaagttccactcaactggatacaagtttcaaggagaagtttgaaatcaaggtgataggagaaacatctctttcgcctcccaaagaattgcttgtgatctttttgccccaatagctaaagttggactcaagtgatgaaagtttcaaggagaagttcaaaatcaaggtgataggaagtttttctgggtaattcttgatacctgaagatttgggtatgaaatcaaggtcttctttgaagtatctacatcttctgtccatagaaatctcctacataggctctcaatgcaagctttctttggcaactgagaccaaaattactctacttttattgcatttggactttattttcaatttgctggttctgaaagttacggctactgagtagtttctagccttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="146503" stop="144989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146492" g_stop="146162" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146161" i_stop="145483" i_length="679">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145482" g_stop="145288" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="526" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E232896" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146492" e_stop="146162"/>
          <exon e_start="145482" e_stop="145288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAGGTAAAAATATCCTCATCATGTTGCTATATGTTTCTTTAGGTCTTAAGAGATGCACATTCTTCTCATTCTTATGTTTATATCGGTATTCTCTATTTCCGGAGTAGCTCTCTTTTTGTCAATAGTTCTGCATTCTGTAATTGTCAAATCACTTACACAGGGATAAACAACTTGAACAACTCATCTTTGATGAGACTTGGTTGTCTCATCTGTGTGAGATGTGATCACAATTTTGTGTTGTAGAGGACTCAGGGACAAGATAGGGTTCTCCCAACCTCACTGTTACTATACAACCTCTTATATAATATGGCCAGATAGAAGAGAAATAGAAGTTAGGAACATACATGTCTAAATTTGGTCATGGAAAAGCCTACTAAAGCTGCTCTTACAGAATTTTTGGTGGCTTGATAAAATGAAACTAACAAGTGTATAATTTTGACAAGTTTCTTAACTAACAGGCAAAATGTTGACATTTAGTATATATGTTGTGATTTCCCCCTTTCATAATTCTGTAGAGCTATGGAATCAAAATAGATAGAATTTTGAGTAGTTAATAGTATAGATAGATATTCCTGATTGAATTCCACATCCTTTTTTTTCTTTTTGCTTGCGTTCCGAAGAAGCTTACAAATTGCAGCTTTGTTTCAAGCTTGTATGTCTGATATATTGAATCCTCCTGCAGATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTCAATTTGCTGGTTCTGAAAGTTACGGCTACTGAGTAGTTTCTAGCCTTGAAAT</genome_strand>
        <mrna_strand>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTCAATTTGCTGGTTCTGAAAGTTACGGCTACTGAGTAGTTTCTAGCCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242219" ref_strand="+" ref_description="SGN-E242219 [cLED-37-I16]">
      <seq>cccaacaccctaacagggtgaactgtaattaattgtgtcatcacaggcatatacagggaagatctgttgatgcatcactttcgcctcccaaagaattgcttgtgatccttttgtcccaacaggcggttaagttccactcaactggatacaagtttcaaggagaagtttgaaatcaaggtgataggagaaacatctctttcgcctcccaaagaattgcttgtgatctttttgccccaatagctaaagttggactcaagtgatgaaagtttcaaggagaagttcaaaatcaaggtgataggaagtttttctgggtaattcttgatacctgaagatttgggtatgaaatcaaggtcttctttgaagtatctacatcttctgtccatagaaatctcctacataggctctcaatgcaagctttctttggcaactgagaccaaaattactctacttttattgcatttggactttattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="146503" stop="145040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146492" g_stop="146162" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146161" i_stop="145483" i_length="679">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145482" g_stop="145340" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="474" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-E242219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146492" e_stop="146162"/>
          <exon e_start="145482" e_stop="145340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAGGTAAAAATATCCTCATCATGTTGCTATATGTTTCTTTAGGTCTTAAGAGATGCACATTCTTCTCATTCTTATGTTTATATCGGTATTCTCTATTTCCGGAGTAGCTCTCTTTTTGTCAATAGTTCTGCATTCTGTAATTGTCAAATCACTTACACAGGGATAAACAACTTGAACAACTCATCTTTGATGAGACTTGGTTGTCTCATCTGTGTGAGATGTGATCACAATTTTGTGTTGTAGAGGACTCAGGGACAAGATAGGGTTCTCCCAACCTCACTGTTACTATACAACCTCTTATATAATATGGCCAGATAGAAGAGAAATAGAAGTTAGGAACATACATGTCTAAATTTGGTCATGGAAAAGCCTACTAAAGCTGCTCTTACAGAATTTTTGGTGGCTTGATAAAATGAAACTAACAAGTGTATAATTTTGACAAGTTTCTTAACTAACAGGCAAAATGTTGACATTTAGTATATATGTTGTGATTTCCCCCTTTCATAATTCTGTAGAGCTATGGAATCAAAATAGATAGAATTTTGAGTAGTTAATAGTATAGATAGATATTCCTGATTGAATTCCACATCCTTTTTTTTCTTTTTGCTTGCGTTCCGAAGAAGCTTACAAATTGCAGCTTTGTTTCAAGCTTGTATGTCTGATATATTGAATCCTCCTGCAGATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTC</genome_strand>
        <mrna_strand>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>152</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3414" PGL_stop="230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3414" e_stop="3342"/>
            <exon e_start="3238" e_stop="3141"/>
            <exon e_start="3031" e_stop="2788"/>
            <exon e_start="2433" e_stop="2387"/>
            <exon e_start="1656" e_stop="1619"/>
            <exon e_start="1543" e_stop="1498"/>
            <exon e_start="1336" e_stop="1283"/>
            <exon e_start="1178" e_stop="1110"/>
            <exon e_start="276" e_stop="230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.288" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.708" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.225" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3414" e_stop="3342" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.741">
            <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3238" e_stop="3141" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.956">
            <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3031" e_stop="2788" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.288">
            <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2433" e_stop="2387" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1656" e_stop="1619" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.708" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1543" e_stop="1498" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1336" e_stop="1283" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1178" e_stop="1110" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.757" acc_prob="0.225">
            <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="276" e_stop="230" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3414" stop="3342"/>
              <exon start="3238" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1656" stop="1619"/>
              <exon start="1543" stop="1498"/>
              <exon start="1336" stop="1283"/>
              <exon start="1178" stop="1163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3414" stop="3342"/>
              <exon start="3238" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1656" stop="1619"/>
              <exon start="1543" stop="1498"/>
              <exon start="1336" stop="1283"/>
              <exon start="1178" stop="1163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3413" stop="3342"/>
              <exon start="3238" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1656" stop="1619"/>
              <exon start="1543" stop="1498"/>
              <exon start="1336" stop="1283"/>
              <exon start="1178" stop="1110"/>
              <exon start="276" stop="230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG : ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC : GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT : ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG : ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA : ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG : GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG : GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT : ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</gDNA_template>
            <first_frame> L  H  L  T  G  E  L  R  F  I  P  P  A  A  M  T  P  V  S  S  K  L  Y  A   : D  D  V  S  L  L  M  V  L  V  D  T  N  P  Y  F  W  S  S  M  K  N  T  A  F  T  F  P  K  F  I  S  H  :  V  L  A  F  L  N  S  I  L  L  L  N  Q  M  N  Q  V  V  V  I  A  T  G  Y  N  S  C  D  Y  V  F  D  S  S  T  S  S  M  Q  R  A  E  C  L  L  E  K  L  E  D  F  V  D  K  D  E  S  L  S  Q  E  D  S  V  D  G  V  G  F  S  L  L  S  G  A  L  S  M  A  L  C   : Y  I  Q  R  V  F  R  S  G  P  L  H  P  Q  P  R  :  I  L  C  L  H  G  S  P  D  G  P  G  Q :   Y  V  A  V  M  N  S  I  F  S  A  Q  R  S  M  :  V  P  I  D  S  C  V  I  G  S  Q  H  S  A  F  L  Q  Q  :  A  S  Y  I  T  G  G  V  Y  L  K  P  Q  V  S  D  G  L  F  Q  Y  L  S  :  T  V  F  A  T  D  L  H  S  R  S  F  L  Q  L   </first_frame>
            <second_frame>  Y  T  *  P  V  N  *  G  L  F  H  R  R  P  *  H  R  F  H  Q  S  F  T  Q  :  T  M  *  A  Y  *  W  F  W  L  I  Q  I  P  T  S  G  A  Q  *  R  T  L  P  S  H  S  L  N  S  Y  H  T :   F  L  L  S  *  I  R  Y  F  Y  *  I  R  *  T  K  *  L  *  L  Q  L  G  T  I  H  V  I  M  Y  S  I  R  L  P  R  Q  C  K  E  L  S  V  C  W  R  N  W  R  I  L  W  I  K  M  S  P  *  V  K  K  T  L  L  M  E  L  G  F  R  C  F  L  V  H  F  L  W  L  C  A  :  T  F  N  G  Y  F  V  Q  G  L  F  I  H  N  L  G :   Y  C  V  C  M  D  L  Q  M  G  R  D   : N  M  L  Q  S  *  I  Q  F  S  Q  L  N  V  Q  W :   Y  P  L  I  H  V  *  *  D  L  S  I  L  L  F  F  S  R :   L  L  T  *  L  V  V  Y  I  *  N  P  K  Y  Q  M  D  C  F  N  I  S  L :   Q  F  L  R  L  I  Y  I  L  G  A  S  C  N  F  </second_frame>
            <third_frame>   T  P  D  R  *  I  K  V  Y  S  T  G  G  H  D  T  G  F  I  K  A  L  R  R :   R  C  E  P  I  D  G  S  G  *  Y  K  S  L  L  L  E  L  N  E  E  H  C  L  H  I  P  *  I  H  I  T   : R  S  C  F  L  E  F  D  T  F  T  E  S  D  E  P  S  S  C  D  C  N  W  V  Q  F  M  *  L  C  I  R  F  V  Y  L  V  N  A  K  S  *  V  F  V  G  E  T  G  G  F  C  G  *  R  *  V  L  E  S  R  R  L  C  *  W  S  W  V  F  A  A  F  W  C  T  F  Y  G  F  V  L :   H  S  T  G  I  S  F  R  A  S  S  S  T  T  S   : D  I  V  S  A  W  I  S  R  W  A  G  T  :  I  C  C  S  H  E  F  N  F  L  S  S  T  F  N   : G  T  H  *  F  M  C  N  R  I  S  A  F  C  F  S  S  A   : G  F  L  H  N  W  W  C  I  F  E  T  P  S  I  R  W  T  V  S  I  S  L   : Y  S  F  C  D  *  F  T  F  S  E  L  L  A  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3414" stop="3342"/>
                    <exon start="3238" stop="3141"/>
                    <exon start="3031" stop="2788"/>
                    <exon start="2433" stop="2387"/>
                    <exon start="1656" stop="1619"/>
                    <exon start="1543" stop="1498"/>
                    <exon start="1336" stop="1283"/>
                    <exon start="1178" stop="1110"/>
                    <exon start="276" stop="232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLTGELRFIPPAAMTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3166" e_stop="3141"/>
            <exon e_start="3031" e_stop="2788"/>
            <exon e_start="2433" e_stop="2387"/>
            <exon e_start="1326" e_stop="1283"/>
            <exon e_start="1178" e_stop="1110"/>
            <exon e_start="276" e_stop="253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.288" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.225" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3166" e_stop="3141" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.956">
            <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3031" e_stop="2788" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.288">
            <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2433" e_stop="2387" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2386" i_stop="1327" i_length="1060"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1326" e_stop="1283" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.929" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1178" e_stop="1110" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.757" acc_prob="0.225">
            <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="276" e_stop="253" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3166" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1326" stop="1283"/>
              <exon start="1178" stop="1110"/>
              <exon start="276" stop="253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACATTCCCTAAATTCATATCACAC : GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT : ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG : ATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG : GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT : ACAGTTTTTGCGACTGATTTACAT</gDNA_template>
            <first_frame> S  H  S  L  N  S  Y  H  T :   F  L  L  S  *  I  R  Y  F  Y  *  I  R  *  T  K  *  L  *  L  Q  L  G  T  I  H  V  I  M  Y  S  I  R  L  P  R  Q  C  K  E  L  S  V  C  W  R  N  W  R  I  L  W  I  K  M  S  P  *  V  K  K  T  L  L  M  E  L  G  F  R  C  F  L  V  H  F  L  W  L  C  A  :  T  F  N  G  Y  F  V  Q  G  L  F  I  H  N  L  G :   F  M  C  N  R  I  S  A  F  C  F  S  S  A   : G  F  L  H  N  W  W  C  I  F  E  T  P  S  I  R  W  T  V  S  I  S  L   : Y  S  F  C  D  *  F  T  </first_frame>
            <second_frame>  H  I  P  *  I  H  I  T   : R  S  C  F  L  E  F  D  T  F  T  E  S  D  E  P  S  S  C  D  C  N  W  V  Q  F  M  *  L  C  I  R  F  V  Y  L  V  N  A  K  S  *  V  F  V  G  E  T  G  G  F  C  G  *  R  *  V  L  E  S  R  R  L  C  *  W  S  W  V  F  A  A  F  W  C  T  F  Y  G  F  V  L :   H  S  T  G  I  S  F  R  A  S  S  S  T  T  S   : D  S  C  V  I  G  S  Q  H  S  A  F  L  Q  Q  :  A  S  Y  I  T  G  G  V  Y  L  K  P  Q  V  S  D  G  L  F  Q  Y  L  S  :  T  V  F  A  T  D  L  H </second_frame>
            <third_frame>   T  F  P  K  F  I  S  H  :  V  L  A  F  L  N  S  I  L  L  L  N  Q  M  N  Q  V  V  V  I  A  T  G  Y  N  S  C  D  Y  V  F  D  S  S  T  S  S  M  Q  R  A  E  C  L  L  E  K  L  E  D  F  V  D  K  D  E  S  L  S  Q  E  D  S  V  D  G  V  G  F  S  L  L  S  G  A  L  S  M  A  L  C   : Y  I  Q  R  V  F  R  S  G  P  L  H  P  Q  P  R  :  I  H  V  *  *  D  L  S  I  L  L  F  F  S  R :   L  L  T  *  L  V  V  Y  I  *  N  P  K  Y  Q  M  D  C  F  N  I  S  L :   Q  F  L  R  L  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3164" stop="3141"/>
                    <exon start="3031" stop="2788"/>
                    <exon start="2433" stop="2387"/>
                    <exon start="1326" stop="1315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFRSGPLHPQPRIHV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2856" stop="2788"/>
                    <exon start="2433" stop="2387"/>
                    <exon start="1326" stop="1283"/>
                    <exon start="1178" stop="1110"/>
                    <exon start="276" stop="260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKKTLLMELGFRCFLVHFLWLCATFNGYFVQGLFIHNLGFMCNRISAFCFSSAGFLHNWWCIFETPSIRWTVSISLYSFCD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2837" stop="2788"/>
                    <exon start="2433" stop="2387"/>
                    <exon start="1326" stop="1283"/>
                    <exon start="1178" stop="1110"/>
                    <exon start="276" stop="253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSWVFAAFWCTFYGFVLHSTGISFRASSSTTSDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8040" PGL_stop="8837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8040" e_stop="8052"/>
            <exon e_start="8217" e_stop="8307"/>
            <exon e_start="8422" e_stop="8837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8040" e_stop="8052" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8053" i_stop="8216" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8217" e_stop="8307" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8308" i_stop="8421" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="8422" e_stop="8837" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8040" stop="8052"/>
              <exon start="8217" stop="8307"/>
              <exon start="8422" stop="8837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGTCACGGAT : GCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGG : GTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAACAGATTTA</gDNA_template>
            <first_frame> V  C  H  G   : C  C  *  A  H  Q  H  V  Q  F  L  K  V  L  E  R  S  *  L  L  R  *  L  L  V  *  T  A  V  C  G :   *  M  L  S  T  N  R  Q  S  S  L  L  R  M  Q  *  *  T  L  S  P  *  P  Q  C  N  K  R  L  W  W  R  S  C  L  T  E  *  I  E  L  D  L  A  F  R  P  H  S  L  *  Q  P  N  D  V  M  D  N  V  I  V  T  R  P  R  N  I  N  V  T  Q  A  S  S  S  W  T  F  S  L  R  L  S  S  S  S  L  M  K  P  S  C  L  F  M  *  F  L  *  E  Y  R  E  K  M  *  H  Y  *  Q  N  *  L  S  M  Q  T  F  C  P  W  C  C  I  Y  S  S  N  Q  S  S  V  P  L  N  R  F  </first_frame>
            <second_frame>  F  V  T  D  :  A  A  E  L  T  N  M  S  S  S  *  R  S  W  K  E  A  S  F  *  D  S  C  W  F  K  R  P  C  V   : G  K  C  *  A  P  I  V  N  H  P  C  C  E  C  N  N  E  L  *  V  L  D  L  S  A  T  K  D  Y  G  G  E  A  A  *  Q  S  K  L  N  W  I  *  H  F  D  H  I  A  S  S  S  Q  M  M  *  W  I  M  *  L  *  P  D  R  G  T  *  M  L  H  K  L  L  P  H  G  L  L  A  C  G  F  P  V  H  H  S  *  N  R  P  A  C  L  C  D  S  C  E  S  I  E  K  R  C  N  I  I  S  R  I  D  C  P  C  K  H  F  V  H  G  V  V  F  I  L  Q  I  N  L  L  S  L  *  T  D  L </second_frame>
            <third_frame>   L  S  R  M :   L  L  S  S  P  T  C  P  V  L  E  G  L  G  K  K  L  A  F  E  I  A  V  G  L  N  G  R  V  W  :  V  N  A  E  H  Q  S  S  I  I  L  A  A  N  A  I  M  N  S  E  S  L  T  S  V  Q  Q  K  I  M  V  E  K  L  L  D  R  V  N  *  T  G  F  S  I  S  T  T  *  P  L  A  A  K  *  C  D  G  *  C  D  C  N  Q  T  A  E  H  K  C  Y  T  S  F  F  L  M  D  F  *  P  A  A  F  Q  F  I  T  H  E  T  V  L  L  V  Y  V  I  L  V  R  V  *  R  K  D  V  T  L  L  A  E  L  I  V  H  A  N  I  L  S  M  V  L  Y  L  F  F  K  S  I  F  C  P  S  K  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8042" stop="8052"/>
                    <exon start="8217" stop="8307"/>
                    <exon start="8422" stop="8541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSRMLLSSPTCPVLEGLGKKLAFEIAVGLNGRVWVNAEHQSSIILAANAIMNSESLTSVQQKIMVEKLLDRVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9347" PGL_stop="16039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9348" e_stop="9411"/>
            <exon e_start="9528" e_stop="9605"/>
            <exon e_start="10353" e_stop="10588"/>
            <exon e_start="10691" e_stop="10739"/>
            <exon e_start="10846" e_stop="11030"/>
            <exon e_start="11654" e_stop="11843"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
            <exon e_start="15228" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.469" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9348" e_stop="9411" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9528" e_stop="9605" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.469">
            <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10353" e_stop="10588" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10691" e_stop="10739" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10846" e_stop="11030" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11843" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="15228" e_stop="16039" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9348" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9348" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9358" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9358" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9540" stop="9605"/>
              <exon start="10353" stop="10556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10451" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10859" stop="11030"/>
              <exon start="11654" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10978" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11713" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11803" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12028" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12053" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13389" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13508" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="16012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="15871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15522" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG : TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT : GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG : ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> R  D  E  Q  N  P  L  V  G  S  D  I  L  S  S  I  I  N  S  S  *   : V  Q  *  E  L  D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  E  E  I  D  E  A  F  R  R  V  P  :  D  P  T  P  T  V  T  S  T  Q  P  V  A  A  N  E   : D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D  E  K  G  I  V  K  G  K  P  S  L  A  E  E  A  A  V  A  A  K  A  A  A  A  A  A  A  D  V  A  R  A  S  Q  E  M  L  A  S  K  S  E   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </first_frame>
            <second_frame>  E  M  S  K  I  H  L  W  V  L  T  Y  Y  H  Q  *  S  I  R  L  E  :  F  N  R  S  W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R  R  K  L  T  R  P  F  V  E  F  L :   I  L  P  Q  L  L  L  A  H  S  Q  L  L  L  M  K  :  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  K  K  V  L  S  R  E  N  Q  V  *  Q  K  K  L  L  L  L  Q  K  L  Q  Q  L  L  L  L  M  L  P  E  Q  A  R  R  C  W  H  Q  N  P  K  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </second_frame>
            <third_frame>   R  *  A  K  S  T  C  G  F  *  H  T  I  I  N  N  Q  F  V  L  S :   S  I  G  V  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K  G  G  N  *  R  G  L  S  S  S  S   : *  S  Y  P  N  C  Y  *  H  T  A  S  C  C  *  *  R :   W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  *  K  R  Y  C  Q  G  K  T  K  F  S  R  R  S  C  C  C  C  K  S  C  S  S  C  C  C  *  C  C  P  S  K  P  G  D  V  G  I  K  I  R  R :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9536" stop="9605"/>
                    <exon start="10353" stop="10588"/>
                    <exon start="10691" stop="10739"/>
                    <exon start="10846" stop="11030"/>
                    <exon start="11654" stop="11843"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                    <exon start="15228" stop="15701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDNMASQSDSPPNSVNENTQNPASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTKEEIDEAFRRVPDPTPTVTSTQPVAANEDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKGIVKGKPSLAEEAAVAAKAAAAAAADVARASQEMLASKSEEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9499" e_stop="9605"/>
            <exon e_start="10353" e_stop="10588"/>
            <exon e_start="10691" e_stop="10739"/>
            <exon e_start="10846" e_stop="11030"/>
            <exon e_start="11654" e_stop="11843"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
            <exon e_start="15228" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.469" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9499" e_stop="9605" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.469">
            <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10353" e_stop="10588" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10691" e_stop="10739" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10846" e_stop="11030" e_length="185"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11843" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="10" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15228" e_stop="16039" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9499" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9499" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9540" stop="9605"/>
              <exon start="10353" stop="10556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10451" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10859" stop="11030"/>
              <exon start="11654" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10978" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11713" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11803" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12028" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12053" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13389" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13508" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="16012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="15871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15522" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT : GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG : ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> L  F  L  V  L  F  L  K  F  S  S  I  G  V  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K  G  G  N  *  R  G  L  S  S  S  S   : *  S  Y  P  N  C  Y  *  H  T  A  S  C  C  *  *  R :   W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  *  K  R  Y  C  Q  G  K  T  K  F  S  R  R  S  C  C  C  C  K  S  C  S  S  C  C  C  *  C  C  P  S  K  P  G  D  V  G  I  K  I  R  R :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </first_frame>
            <second_frame>  F  F  L  Y  C  S  *  N  S  V  Q  *  E  L  D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  E  E  I  D  E  A  F  R  R  V  P  :  D  P  T  P  T  V  T  S  T  Q  P  V  A  A  N  E   : D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D  E  K  G  I  V  K  G  K  P  S  L  A  E  E  A  A  V  A  A  K  A  A  A  A  A  A  A  D  V  A  R  A  S  Q  E  M  L  A  S  K  S  E   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </second_frame>
            <third_frame>   F  S  C  T  V  L  E  I  Q  F  N  R  S  W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R  R  K  L  T  R  P  F  V  E  F  L :   I  L  P  Q  L  L  L  A  H  S  Q  L  L  L  M  K  :  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  K  K  V  L  S  R  E  N  Q  V  *  Q  K  K  L  L  L  L  Q  K  L  Q  Q  L  L  L  L  M  L  P  E  Q  A  R  R  C  W  H  Q  N  P  K  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9536" stop="9605"/>
                    <exon start="10353" stop="10588"/>
                    <exon start="10691" stop="10739"/>
                    <exon start="10846" stop="11030"/>
                    <exon start="11654" stop="11843"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                    <exon start="15228" stop="15701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDNMASQSDSPPNSVNENTQNPASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTKEEIDEAFRRVPDPTPTVTSTQPVAANEDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKGIVKGKPSLAEEAAVAAKAAAAAAADVARASQEMLASKSEEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9347" e_stop="9411"/>
            <exon e_start="9528" e_stop="9605"/>
            <exon e_start="10347" e_stop="10588"/>
            <exon e_start="10691" e_stop="10739"/>
            <exon e_start="10846" e_stop="11030"/>
            <exon e_start="11654" e_stop="11843"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
            <exon e_start="15228" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9347" e_stop="9411" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9528" e_stop="9605" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.553">
            <gDNA_intron_boundary i_start="9606" i_stop="10346" i_length="741"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10347" e_stop="10588" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10691" e_stop="10739" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10846" e_stop="11030" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11843" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="15228" e_stop="16039" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9347" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10347" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9356" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10347" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9360" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10347" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10451" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10859" stop="11030"/>
              <exon start="11654" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10978" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11713" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11803" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12028" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12053" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13389" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13508" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="16012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="15871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15522" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG : TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT : GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG : ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> S  R  *  A  K  S  T  C  G  F  *  H  T  I  I  N  N  Q  F  V  L  S :   S  I  G  V  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   N  S  F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K  G  G  N  *  R  G  L  S  S  S  S   : *  S  Y  P  N  C  Y  *  H  T  A  S  C  C  *  *  R :   W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  *  K  R  Y  C  Q  G  K  T  K  F  S  R  R  S  C  C  C  C  K  S  C  S  S  C  C  C  *  C  C  P  S  K  P  G  D  V  G  I  K  I  R  R :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </first_frame>
            <second_frame>  R  D  E  Q  N  P  L  V  G  S  D  I  L  S  S  I  I  N  S  S  *   : V  Q  *  E  L  D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  T  A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  E  E  I  D  E  A  F  R  R  V  P  :  D  P  T  P  T  V  T  S  T  Q  P  V  A  A  N  E   : D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D  E  K  G  I  V  K  G  K  P  S  L  A  E  E  A  A  V  A  A  K  A  A  A  A  A  A  A  D  V  A  R  A  S  Q  E  M  L  A  S  K  S  E   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </second_frame>
            <third_frame>   E  M  S  K  I  H  L  W  V  L  T  Y  Y  H  Q  *  S  I  R  L  E  :  F  N  R  S  W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  Q  Q  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R  R  K  L  T  R  P  F  V  E  F  L :   I  L  P  Q  L  L  L  A  H  S  Q  L  L  L  M  K  :  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  K  K  V  L  S  R  E  N  Q  V  *  Q  K  K  L  L  L  L  Q  K  L  Q  Q  L  L  L  L  M  L  P  E  Q  A  R  R  C  W  H  Q  N  P  K  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9536" stop="9605"/>
                    <exon start="10347" stop="10588"/>
                    <exon start="10691" stop="10739"/>
                    <exon start="10846" stop="11030"/>
                    <exon start="11654" stop="11843"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                    <exon start="15228" stop="15701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDNMASQSDSPPNSVNENTQNPATASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTKEEIDEAFRRVPDPTPTVTSTQPVAANEDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKGIVKGKPSLAEEAAVAAKAAAAAAADVARASQEMLASKSEEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9348" e_stop="9411"/>
            <exon e_start="9528" e_stop="9605"/>
            <exon e_start="10353" e_stop="10588"/>
            <exon e_start="10691" e_stop="10739"/>
            <exon e_start="10846" e_stop="11030"/>
            <exon e_start="11654" e_stop="11717"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
            <exon e_start="15228" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.469" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="0.989"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9348" e_stop="9411" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9528" e_stop="9605" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.469">
            <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10353" e_stop="10588" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10691" e_stop="10739" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10846" e_stop="11030" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11717" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11718" i_stop="12017" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="15228" e_stop="16039" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9348" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9358" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9358" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="10852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9540" stop="9605"/>
              <exon start="10353" stop="10556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10859" stop="11030"/>
              <exon start="11654" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10865" stop="11030"/>
              <exon start="11654" stop="11717"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12028" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12053" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13389" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13508" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="16012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="15871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15522" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG : TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT : GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG : ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> R  D  E  Q  N  P  L  V  G  S  D  I  L  S  S  I  I  N  S  S  *   : V  Q  *  E  L  D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  E  E  I  D  E  A  F  R  R  V  P  :  D  P  T  P  T  V  T  S  T  Q  P  V  A  A  N  E   : D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </first_frame>
            <second_frame>  E  M  S  K  I  H  L  W  V  L  T  Y  Y  H  Q  *  S  I  R  L  E  :  F  N  R  S  W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R  R  K  L  T  R  P  F  V  E  F  L :   I  L  P  Q  L  L  L  A  H  S  Q  L  L  L  M  K  :  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </second_frame>
            <third_frame>   R  *  A  K  S  T  C  G  F  *  H  T  I  I  N  N  Q  F  V  L  S :   S  I  G  V  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K  G  G  N  *  R  G  L  S  S  S  S   : *  S  Y  P  N  C  Y  *  H  T  A  S  C  C  *  *  R :   W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  * :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9536" stop="9605"/>
                    <exon start="10353" stop="10588"/>
                    <exon start="10691" stop="10739"/>
                    <exon start="10846" stop="11030"/>
                    <exon start="11654" stop="11717"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                    <exon start="15228" stop="15701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDNMASQSDSPPNSVNENTQNPASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTKEEIDEAFRRVPDPTPTVTSTQPVAANEDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="10762" e_stop="11030"/>
            <exon e_start="11654" e_stop="11843"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
            <exon e_start="15228" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10762" e_stop="11030" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11843" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15228" e_stop="16039" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10762" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10859" stop="11030"/>
              <exon start="11654" stop="11684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10978" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11713" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11803" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12028" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12053" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13376" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13389" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="15519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13508" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="16012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="15871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15522" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> *  V  W  P  F  I  L  F  L  R  L  I  L  F  G  A  Y  A  C  H  V  V  L  I  Y  *  *  Q  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  K  K  V  L  S  R  E  N  Q  V  *  Q  K  K  L  L  L  L  Q  K  L  Q  Q  L  L  L  L  M  L  P  E  Q  A  R  R  C  W  H  Q  N  P  K  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </first_frame>
            <second_frame>  K  F  G  L  L  F  F  S  *  D  *  Y  C  L  E  P  M  L  V  M  L  S  *  Y  I  D  D  R  W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  *  K  R  Y  C  Q  G  K  T  K  F  S  R  R  S  C  C  C  C  K  S  C  S  S  C  C  C  *  C  C  P  S  K  P  G  D  V  G  I  K  I  R  R :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </second_frame>
            <third_frame>   S  L  A  F  Y  S  F  L  E  I  D  T  V  W  S  L  C  L  S  C  C  P  D  I  L  M  T  D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D  E  K  G  I  V  K  G  K  P  S  L  A  E  E  A  A  V  A  A  K  A  A  A  A  A  A  A  D  V  A  R  A  S  Q  E  M  L  A  S  K  S  E   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10764" stop="11030"/>
                    <exon start="11654" stop="11843"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                    <exon start="15228" stop="15701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLAFYSFLEIDTVWSLCLSCCPDILMTDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKGIVKGKPSLAEEAAVAAKAAAAAAADVARASQEMLASKSEEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="14801" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14801" e_stop="16039" e_length="1239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14801" stop="15276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15099" stop="15772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="16012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="16037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15395" stop="15871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15522" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> V  S  S  T  N  N  V  A  I  G  S  N  L  K  V  G  L  G  Q  F  K  N  C  L  C  M  I  D  F  *  K  E  P  *  P  H  S  G  S  *  T  *  K  I  R  F  T  N  R  I  Y  N  P  I  *  V  L  L  L  M  N  *  S  L  Q  L  G  Y  F  R  N  I  V  W  I  K  F  Y  E  H  L  S  L  W  F  G  Y  K  S  Y  G  L  L  D  R  T  F  Y  S  I  H  S  A  F  F  L  G  L  S  G  R  E  V  G  L  E  T  G  H  M  Q  F  T  C  K  I  Y  S  K  W  Q  *  *  P  F  N  N  L  C  L  *  T  A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </first_frame>
            <second_frame>  F  L  L  P  T  M  L  Q  L  G  Q  I  *  R  L  D  W  V  N  L  R  I  V  S  A  *  L  T  F  K  K  N  L  S  H  I  L  A  A  R  R  E  K  Y  D  L  L  I  E  S  I  I  L  F  K  Y  F  F  *  *  I  N  H  C  N  *  D  I  S  G  I  L  Y  G  L  S  S  M  N  T  C  H  F  G  L  D  T  R  V  M  V  Y  *  I  E  L  S  I  Q  Y  I  R  L  F  F  L  D  C  L  D  E  R  W  D  W  R  R  A  I  C  S  S  H  V  R  F  T  R  S  G  N  D  N  H  L  I  I  C  A  C  E  Q  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </second_frame>
            <third_frame>   F  F  Y  Q  Q  C  C  N  W  V  K  F  E  G  W  I  G  S  I  *  E  L  S  L  H  D  *  L  L  K  R  T  L  A  T  F  W  Q  L  D  V  K  N  T  I  Y  *  S  N  L  *  S  Y  L  S  T  S  F  D  E  L  I  T  A  T  R  I  F  Q  E  Y  C  M  D  *  V  L  *  T  P  V  T  L  V  W  I  Q  E  L  W  F  T  R  *  N  F  L  F  N  T  F  G  F  F  S  W  I  V  W  T  R  G  G  I  G  D  G  P  Y  A  V  H  M  *  D  L  L  E  V  A  M  I  T  I  *  *  S  V  L  V  N  S  L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15081" stop="15701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELSIQYIRLFFLDCLDERWDWRRAICSSHVRFTRSGNDNHLIICACEQPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21634" PGL_stop="21163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21634" e_stop="21163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="21634" e_stop="21163" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21634" stop="21163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21630" stop="21175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21546" stop="21174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21541" stop="21180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTATGTATATATTTAG</gDNA_template>
            <first_frame> R  K  S  L  H  L  I  N  C  V  R  R  V  T  P  L  A  P  L  L  S  G  G  S  Y  V  T  S  L  T  G  V  T  V  R  V  K  I  H  S  C  F  *  Q  L  R  S  K  K  E  K  R  K  Q  R  L  R  E  P  T  L  E  *  S  P  E  K  F  P  P  L  K  I  F  R  R  C  V  A  R  *  A  E  K  I  N  G  S  P  I  Y  H  T  G  K  I  Y  *  A  F  W  V  M  *  M  G  *  I  E  I  Y  S  I  S  E  A  N  Y  S  E  R  N  L  Q  I  I  K  *  L  I  S  D  *  A  W  V  N  N  I  *  W  I  M  N  E  I  L  N  *  F  N  R  L  C  I  Y  L  </first_frame>
            <second_frame>  G  R  V  S  I  *  S  I  A  *  E  E  *  L  H  W  L  L  F  *  A  V  E  V  T  *  L  H  S  P  E  *  Q  *  G  *  R  Y  I  R  V  F  D  N  S  V  Q  K  K  R  R  E  N  R  D  Y  E  N  R  L  W  N  N  H  R  K  S  S  R  R  *  R  F  S  G  V  A  L  L  D  K  R  K  R  *  T  E  V  L  F  T  I  Q  A  R  F  T  K  L  S  G  *  C  E  W  A  K  S  K  F  T  A  F  L  R  L  I  T  V  N  E  I  F  R  *  L  N  S  *  S  V  I  K  H  G  *  I  I  S  N  G  L  *  M  K  Y  *  I  N  L  T  G  Y  V  Y  I  * </second_frame>
            <third_frame>   E  E  S  P  S  D  Q  L  R  K  K  S  N  S  T  G  S  S  S  K  R  W  K  L  R  D  F  T  H  R  S  N  S  E  G  K  D  T  F  V  F  L  T  T  P  F  K  K  R  E  E  K  T  E  I  T  R  T  D  S  G  I  I  T  G  K  V  P  A  V  E  D  F  P  A  L  R  C  S  I  S  G  K  D  K  R  K  S  Y  L  P  Y  R  Q  D  L  L  S  F  L  G  N  V  N  G  L  N  R  N  L  Q  H  F  *  G  *  L  Q  *  T  K  S  S  D  N  *  I  V  N  Q  *  L  S  M  G  K  *  Y  L  M  D  Y  E  *  N  I  E  L  I  *  Q  V  M  Y  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21632" stop="21291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EESPSDQLRKKSNSTGSSSKRWKLRDFTHRSNSEGKDTFVFLTTPFKKREEKTEITRTDSGIITGKVPAVEDFPALRCSISGKDKRKSYLPYRQDLLSFLGNVNGLNRNLQHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27357" PGL_stop="28121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27357" e_stop="28121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="27357" e_stop="28121" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27357" stop="28121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27357" stop="28015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTG</gDNA_template>
            <first_frame> G  I  E  V  V  Q  Y  P  F  N  K  E  G  N  T  A  Q  *  H  T  E  Q  *  P  R  R  E  Q  I  Q  Q  F  Y  *  K  *  K  S  E  R  G  E  I  K  H  R  V  L  N  N  S  R  *  P  L  A  *  I  S  *  L  I  R  F  T  I  S  M  I  T  K  E  L  Q  L  L  L  S  T  T  T  K  K  N  Q  P  W  C  L  P  F  P  R  S  L  S  P  R  F  P  T  W  L  L  S  R  G  K  Y  Y  H  Q  P  S  Q  A  L  W  S  S  T  P  D  S  V  L  S  Q  P  D  Q  V  P  R  H  L  K  V  L  L  Q  K  V  K  L  R  A  E  K  L  K  H  D  G  D  D  N  *  Q  G  K  V  Q  T  G  F  C  F  V  N  S  A  R  L  P  *  H  H  Y  P  L  Q  R  P  P  G  Q  *  N  H  *  G  T  K  F  W  I  P  P  T  D  Q  N  W  Q  K  *  H  R  Y  T  L  *  K  A  L  V  N  P  A  *  S  I  A  E  E  C  C  D  L  H  *  D  W  V  S  Q  W  Q  Q  I  *  *  L  F  F  F  F  A  W  V  *  L  D  L </first_frame>
            <second_frame>  A  L  R  L  S  N  I  H  S  I  K  K  A  T  Q  L  S  N  T  Q  S  S  S  P  G  E  N  R  S  S  N  S  T  E  N  K  K  A  S  E  A  R  *  N  T  G  F  S  T  T  V  V  S  L  S  H  K  Y  P  N  *  L  D  S  Q  F  Q  *  L  L  R  N  Y  N  F  Y  Y  Q  L  R  R  R  R  T  N  H  G  A  Y  L  F  Q  E  A  F  H  L  A  F  Q  L  G  F  Y  L  G  G  N  I  I  T  S  L  L  K  H  C  G  H  R  L  Q  I  L  F  Y  H  N  Q  I  R  S  L  A  I  *  R  Y  C  S  R  K  *  S  C  G  L  R  S  *  N  M  T  E  T  I  T  D  K  G  R  S  K  R  V  S  A  L  *  T  L  Q  G  F  H  S  I  T  I  L  C  K  D  H  L  G  S  R  I  I  K  V  Q  S  F  G  F  L  Q  R  T  K  T  G  K  S  S  T  D  I  L  F  R  R  H  W  *  T  R  R  K  V  *  Q  K  S  V  V  I  S  I  R  I  G  Y  P  N  G  S  R  F  S  S  S  S  S  F  L  L  G  F  S  L  T   </second_frame>
            <third_frame>   H  *  G  C  P  I  S  I  Q  *  R  R  Q  H  S  S  V  T  H  R  A  V  A  Q  E  R  T  D  P  A  I  L  L  K  I  K  K  R  A  R  R  D  K  T  Q  G  S  Q  Q  Q  S  L  A  S  R  I  N  I  L  I  N  *  I  H  N  F  N  D  Y  *  G  T  T  T  F  I  I  N  Y  D  E  E  E  P  T  M  V  L  T  F  S  K  K  P  F  T  S  L  S  N  L  A  F  I  S  G  E  I  L  S  P  A  F  S  S  I  V  V  I  D  S  R  F  C  F  I  T  T  R  S  G  P  S  P  F  E  G  T  A  P  E  S  K  A  A  G  *  E  V  E  T  *  R  R  R  *  L  T  R  E  G  P  N  G  F  L  L  C  K  L  C  K  A  S  I  A  S  L  S  F  A  K  T  T  W  A  V  E  S  L  R  Y  K  V  L  D  S  S  N  G  P  K  L  A  K  V  A  Q  I  Y  S  L  E  G  T  G  E  P  G  V  K  Y  S  R  R  V  L  *  S  P  L  G  L  G  I  P  M  A  A  D  L  V  A  L  L  L  F  C  L  G  L  A  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27537" stop="27830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRFTISMITKELQLLLSTTTKKNQPWCLPFPRSLSPRFPTWLLSRGKYYHQPSQALWSSTPDSVLSQPDQVPRHLKVLLQKVKLRAEKLKHDGDDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27569" stop="27799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTTTFIINYDEEEPTMVLTFSKKPFTSLSNLAFISGEILSPAFSSIVVIDSRFCFITTRSGPSPFEGTAPESKAAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27827" stop="28042"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTREGPNGFLLCKLCKASIASLSFAKTTWAVESLRYKVLDSSNGPKLAKVAQIYSLEGTGEPGVKYSRRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27562" stop="27765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRNYNFYYQLRRRRTNHGAYLFQEAFHLAFQLGFYLGGNIITSLLKHCGHRLQILFYHNQIRSLAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28622" PGL_stop="27364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28622" e_stop="27364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="28622" e_stop="27364" e_length="1259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28622" stop="27730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28205" stop="27364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTGAATGGAAACAACGCGGGCTTGTCAGTTGAAAATATGCAGGTTATAGGTCCTGCTCCTACTCAAGGTAAACTTGAGCCTAAGAGGAGGAGGAGGAAGAAGGAAGAGTTGGTTTCCGAGAATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAACAGAATCTGGAGTCGATGACCACAATGCTTGAGAAGGCTGGTGATAATATTTCCCCCGAGATAAAAGCCAAGTTGGAAAGCGAGGTGAAAGGCTTCTTGGAAAAGGTAAGCACCATGGTTGGTTCTTCTTCGTCGTAGTTGATAATAAAAGTTGTAGTTCCTTAGTAATCATTGAAATTGTGAATCTAATTAATTAGGATATTTATGCGAGAGGCTAACGACTGTTGTTGAGAACCCTGTGTTTTATCTCGCCTCGCTCGCTTTTTTATTTTCAGTAGAATTGCTGGATCTGTTCTCTCCTGGGCTACTGCTCTGTGTGTTACTGAGCTGTGTTGCCTTCTTTATTGAATGGATATTGGACAACCT</gDNA_template>
            <first_frame> T  *  M  E  T  T  R  A  C  Q  L  K  I  C  R  L  *  V  L  L  L  L  K  V  N  L  S  L  R  G  G  G  G  R  R  K  S  W  F  P  R  I  C  Q  I  *  A  K  G  T  P  S  S  F  Q  C  *  K  V  W  K  S  P  A  R  Y  P  W  K  V  V  L  N  Q  I  T  C  W  G  Y  R  G  R  L  P  S  R  M  L  N  F  L  L  D  N  Q  M  P  M  E  F  M  L  Q  V  A  H  Y  Q  I  F  H  R  S  P  V  W  F  R  L  Q  K  E  K  A  R  N  G  K  G  R  R  K  H  *  L  F  R  I  L  L  Q  L  Y  Q  I  *  M  D  R  S  P  I  R  I  *  R  E  R  R  S  Q  K  *  V  L  S  Q  V  K  L  N  P  S  K  K  E  E  E  L  L  N  L  L  P  L  G  Y  P  I  L  M  E  I  T  T  L  F  C  Y  T  L  R  R  V  H  Q  C  L  L  K  S  I  S  V  L  L  L  P  V  L  V  R  W  R  N  P  K  L  C  T  L  M  I  L  L  P  R  W  S  L  Q  R  I  V  M  L  W  K  P  C  R  V  Y  K  A  E  T  R  L  D  L  P  L  S  V  I  V  S  V  M  F  Q  L  L  S  P  Q  L  Y  F  L  E  Q  Y  L  Q  M  A  R  D  L  I  W  L  *  *  N  R  I  W  S  R  *  P  Q  C  L  R  R  L  V  I  I  F  P  P  R  *  K  P  S  W  K  A  R  *  K  A  S  W  K  R  *  A  P  W  L  V  L  L  R  R  S  *  *  *  K  L  *  F  L  S  N  H  *  N  C  E  S  N  *  L  G  Y  L  C  E  R  L  T  T  V  V  E  N  P  V  F  Y  L  A  S  L  A  F  L  F  S  V  E  L  L  D  L  F  S  P  G  L  L  L  C  V  L  L  S  C  V  A  F  F  I  E  W  I  L  D  N   </first_frame>
            <second_frame>  L  E  W  K  Q  R  G  L  V  S  *  K  Y  A  G  Y  R  S  C  S  Y  S  R  *  T  *  A  *  E  E  E  E  E  E  G  R  V  G  F  R  E  S  A  R  S  E  Q  R  E  H  P  V  H  S  N  A  E  K  C  G  S  H  R  L  V  T  L  G  R  W  S  S  T  R  *  H  V  G  G  T  G  G  V  F  P  P  E  C  *  T  F  C  W  T  T  K  C  Q  W  N  S  C  C  R  *  L  I  T  K  Y  F  T  D  H  R  S  G  F  V  C  K  R  R  R  Q  E  T  E  K  E  G  E  S  I  N  Y  S  E  Y  F  F  S  S  T  R  F  E  W  T  G  H  R  S  E  F  E  G  K  G  G  H  R  N  E  F  C  L  R  S  S  *  T  Q  A  K  K  K  K  S  Y  *  I  C  C  H  W  D  T  Q  S  *  W  R  S  Q  H  S  S  A  I  L  Y  A  G  F  T  S  A  F  *  R  V  Y  L  C  Y  F  C  Q  F  W  S  V  G  G  I  Q  N  F  V  P  *  *  F  Y  C  P  G  G  L  C  K  G  *  *  C  Y  G  S  L  A  E  F  T  K  Q  K  P  V  W  T  F  P  C  Q  L  S  S  P  S  C  F  N  F  S  A  R  S  F  T  F  W  S  S  T  F  K  W  R  G  T  *  S  G  C  D  K  T  E  S  G  V  D  D  H  N  A  *  E  G  W  *  *  Y  F  P  R  D  K  S  Q  V  G  K  R  G  E  R  L  L  G  K  G  K  H  H  G  W  F  F  F  V  V  V  D  N  K  S  C  S  S  L  V  I  I  E  I  V  N  L  I  N  *  D  I  Y  A  R  G  *  R  L  L  L  R  T  L  C  F  I  S  P  R  S  L  F  Y  F  Q  *  N  C  W  I  C  S  L  L  G  Y  C  S  V  C  Y  *  A  V  L  P  S  L  L  N  G  Y  W  T  T  </second_frame>
            <third_frame>   L  N  G  N  N  A  G  L  S  V  E  N  M  Q  V  I  G  P  A  P  T  Q  G  K  L  E  P  K  R  R  R  R  K  K  E  E  L  V  S  E  N  L  P  D  L  S  K  G  N  T  Q  F  I  P  M  L  K  S  V  E  V  T  G  S  L  P  L  E  G  G  P  Q  P  D  N  M  L  G  V  Q  G  A  S  S  L  P  N  A  E  L  F  A  G  Q  P  N  A  N  G  I  H  A  A  G  S  S  L  P  N  I  S  Q  I  T  G  L  V  S  S  A  K  G  E  G  K  K  R  K  R  K  E  K  A  L  I  I  Q  N  T  S  S  A  L  P  D  L  N  G  Q  V  T  D  P  N  L  K  G  K  E  V  T  E  M  S  S  V  S  G  Q  A  K  P  K  Q  K  R  R  R  A  T  K  S  A  A  I  G  I  P  N  P  N  G  D  H  N  T  L  L  L  Y  F  T  P  G  S  P  V  P  S  K  E  Y  I  C  A  T  F  A  S  F  G  P  L  E  E  S  K  T  L  Y  L  N  D  S  T  A  Q  V  V  F  A  K  D  S  D  A  M  E  A  L  Q  S  L  Q  S  R  N  P  F  G  P  S  L  V  S  Y  R  L  R  H  V  S  T  S  Q  P  A  A  L  L  S  G  A  V  P  S  N  G  E  G  P  D  L  V  V  I  K  Q  N  L  E  S  M  T  T  M  L  E  K  A  G  D  N  I  S  P  E  I  K  A  K  L  E  S  E  V  K  G  F  L  E  K  V  S  T  M  V  G  S  S  S  S  *  L  I  I  K  V  V  V  P  *  *  S  L  K  L  *  I  *  L  I  R  I  F  M  R  E  A  N  D  C  C  *  E  P  C  V  L  S  R  L  A  R  F  F  I  F  S  R  I  A  G  S  V  L  S  W  A  T  A  L  C  V  T  E  L  C  C  L  L  Y  *  M  D  I  G  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28620" stop="27592"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNGNNAGLSVENMQVIGPAPTQGKLEPKRRRRKKEELVSENLPDLSKGNTQFIPMLKSVEVTGSLPLEGGPQPDNMLGVQGASSLPNAELFAGQPNANGIHAAGSSLPNISQITGLVSSAKGEGKKRKRKEKALIIQNTSSALPDLNGQVTDPNLKGKEVTEMSSVSGQAKPKQKRRRATKSAAIGIPNPNGDHNTLLLYFTPGSPVPSKEYICATFASFGPLEESKTLYLNDSTAQVVFAKDSDAMEALQSLQSRNPFGPSLVSYRLRHVSTSQPAALLSGAVPSNGEGPDLVVIKQNLESMTTMLEKAGDNISPEIKAKLESEVKGFLEKVSTMVGSSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30417" PGL_stop="30147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30417" e_stop="30147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30417" e_stop="30147" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30417" stop="30147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</gDNA_template>
            <first_frame> L  M  E  A  G  T  L  K  H  E  T  Q  E  S  G  A  E  F  N  E  S  L  D  N  R  V  E  K  I  G  V  A  D  A  V  E  D  M  D  R  S  K  V  H  I  N  D  S  P  T  K  I  E  V  S  G  D  G  I  S  L  T  V  D  V  F  G  P  D  C  T  F  Y  M  E  T  D  N  P  M  G  V  N  G  N  E  A  E  G  D  </first_frame>
            <second_frame>  *  W  K  Q  G  L  *  N  M  K  L  K  N  R  V  L  N  L  M  S  L  L  I  I  G  L  R  K  L  V  W  L  M  L  W  K  I  W  T  G  Q  R  C  T  *  M  I  L  L  Q  R  *  K  F  L  E  M  V  F  L  *  Q  W  M  Y  L  V  Q  I  A  H  F  T  W  K  L  T  T  L  W  V  S  M  V  M  K  Q  K  V  M </second_frame>
            <third_frame>   D  G  S  R  D  F  E  T  *  N  S  R  I  G  C  *  I  *  *  V  S  *  *  *  G  *  E  N  W  C  G  *  C  C  G  R  Y  G  Q  V  K  G  A  H  K  *  F  S  Y  K  D  R  S  F  W  R  W  Y  F  S  D  S  G  C  I  W  S  R  L  H  I  L  H  G  N  *  Q  P  Y  G  C  Q  W  *  *  S  R  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30417" stop="30148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMEAGTLKHETQESGAEFNESLDNRVEKIGVADAVEDMDRSKVHINDSPTKIEVSGDGISLTVDVFGPDCTFYMETDNPMGVNGNEAEGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39278" PGL_stop="39886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39278" e_stop="39886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="39278" e_stop="39886" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39278" stop="39886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCAAAATTCTTAGTCTCAGTGTTTATCTTCTTCCCCCATCATTCTAAAGGTTTCAAAATTCTTAATATTTTGTTTCATTTAAAAATTTTTTCGGAGAGATGTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAAATAATAAAAAAGCTGATAAAAAAAAATTGTTGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGGAGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGGGCAGGGAAGTGGGTGTTTAAGTTTTATTTTTTTTTCATTTTTTTTTACTTTAAAATAATTTTTTAAATTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTTAATAGGTAGTACATCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGACCGCATATGACTTTGGCCTTTTTTTTCCCAT</gDNA_template>
            <first_frame> I  S  K  F  L  V  S  V  F  I  F  F  P  H  H  S  K  G  F  K  I  L  N  I  L  F  H  L  K  I  F  S  E  R  C  F  C  P  S  F  S  T  *  K  T  R  *  S  K  K  L  *  I  I  K  K  L  I  K  K  N  C  W  V  K  D  G  T  V  Q  G  G  E  G  R  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  A  G  K  W  V  F  K  F  Y  F  F  F  I  F  F  Y  F  K  I  I  F  *  I  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  P  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  *  *  V  V  H  L  V  E  V  S  K  *  I  I  G  T  S  L  S  D  R  I  *  L  W  P  F  F  S  H </first_frame>
            <second_frame>  F  Q  N  S  *  S  Q  C  L  S  S  S  P  I  I  L  K  V  S  K  F  L  I  F  C  F  I  *  K  F  F  R  R  D  V  F  A  H  L  S  L  P  K  K  R  D  E  V  K  S  Y  K  *  *  K  S  *  *  K  K  I  V  G  L  K  M  E  L  Y  R  E  G  R  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  G  Q  G  S  G  C  L  S  F  I  F  F  S  F  F  F  T  L  K  *  F  F  K  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  N  R  *  Y  I  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  T  A  Y  D  F  G  L  F  F  P   </second_frame>
            <third_frame>   F  K  I  L  S  L  S  V  Y  L  L  P  P  S  F  *  R  F  Q  N  S  *  Y  F  V  S  F  K  N  F  F  G  E  M  F  L  P  I  F  L  Y  L  K  N  E  M  K  *  K  V  I  N  N  K  K  A  D  K  K  K  L  L  G  *  R  W  N  C  T  G  R  G  G  E  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  G  R  E  V  G  V  *  V  L  F  F  F  H  F  F  L  L  *  N  N  F  L  N  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  N  W  S  N  *  H  V  S  A  S  V  F  H  T  S  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  L  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  *  P  H  M  T  L  A  F  F  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024A16.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42460" PGL_stop="41668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42460" e_stop="42375"/>
            <exon e_start="42300" e_stop="42098"/>
            <exon e_start="41983" e_stop="41668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="42460" e_stop="42375" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42374" i_stop="42301" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="42300" e_stop="42098" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42097" i_stop="41984" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="41983" e_stop="41668" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42460" stop="42375"/>
              <exon start="42300" stop="42098"/>
              <exon start="41983" stop="41758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41902" stop="41668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTAAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCGAGTGCCACGTTCCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  K  I  R  G  S  G  A  T :   F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  E  L  W  *  L  *  M  M  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  S  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P   : R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  E  C  H  V  P  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  S  Y  G  N  Y  K  *  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  L  V  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  :  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  S  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  I  N  D  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024A16.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="50999" PGL_stop="52177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50999" e_stop="52177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50999" e_stop="52177" e_length="1179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50999" stop="51706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50999" stop="51586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50999" stop="51467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51070" stop="51781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51071" stop="51600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51076" stop="51571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51077" stop="51664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51080" stop="51540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51587" stop="52177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="52091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</gDNA_template>
            <first_frame> F  S  K  K  I  W  S  Y  L  *  *  L  T  S  H  F  V  E  A  N  N  P  S  T  I  E  K  L  T  S  I  S  N  S  P  I  T  P  P  Y  L  H  *  V  F  L  L  H  F  V  R  L  P  I  H  F  L  L  L  T  H  V  N  W  L  L  L  C  S  N  N  *  F  F  F  K  G  S  N  S  R  *  C  K  S  E  K  L  L  S  L  V  P  L  W  L  I  H  C  *  N  H  S  F  S  S  S  W  *  W  V  L  V  K  S  C  F  L  H  I  P  I  W  L  N  L  L  *  T  T  K  N  Q  L  F  L  *  M  G  S  R  *  I  R  D  S  W  Y  F  C  H  Q  I  A  L  S  D  S  I  E  V  L  T  C  N  *  K  L  D  P  C  L  P  F  V  L  V  E  V  H  F  G  G  N  L  Y  S  L  Y  I  H  V  M  D  L  E  L  F  G  V  N  R  *  F  E  I  F  V  D  G  V  L  H  F  L  S  L  S  F  A  F  F  L  L  V  M  A  L  L  R  *  I  D  I  A  S  G  P  M  E  F  K  *  A  C  L  T  Y  L  *  T  Y  I  V  F  I  A  N  *  F  F  C  S  I  L  T  C  I  L  C  K  S  V  N  M  *  S  *  I  Y  I  T  S  Y  F  Y  G  P  *  *  R  S  V  Y  S  *  I  K  *  I  S  Q  *  S  V  L  S  K  T  L  *  S  W  S  S  K  C  C  C  L  P  A  Q  S  F  F  S  F  A  Y  A  S  L  V  E  F  D  I  G  L  S  S  P  F  D  S  V  L  V  C  C  P  L  S  F  L  I  C  Q  N  E  T  K  K  E  Q  N  F  H  P  S  F  R  T  N  F  E  *  S  W  K  K  H  L  F  P  Y  V  E  S  R  M  I </first_frame>
            <second_frame>  F  Q  K  K  S  G  V  I  Y  S  D  S  P  L  T  L  L  K  P  I  I  P  Q  P  *  R  S  L  L  P  S  A  T  H  P  L  L  L  H  I  C  I  E  F  S  C  Y  I  L  L  D  F  L  F  I  F  F  Y  *  L  M  *  T  G  Y  C  S  A  Q  I  T  N  F  S  S  R  V  L  I  L  G  N  V  R  V  K  S  Y  F  L  W  Y  P  F  G  *  F  I  V  K  I  I  P  F  Q  V  L  G  N  G  F  S  L  N  L  A  F  F  I  Y  P  F  G  *  T  Y  F  K  P  L  K  I  N  F  F  Y  K  W  G  L  A  K  F  V  I  L  G  I  F  V  T  K  *  L  Y  Q  I  V  L  K  F  *  H  V  T  E  N  *  I  P  V  C  P  L  F  L  L  K  C  I  L  V  A  T  C  I  L  F  I  Y  M  *  W  I  *  S  F  S  E  S  T  V  N  S  R  S  L  *  M  E  Y  F  I  S  F  R  *  V  L  L  F  F  Y  *  L  W  L  Y  S  V  K  L  I  L  L  L  V  L  W  N  S  N  R  L  V  *  H  I  S  R  H  I  *  Y  S  L  L  T  D  S  F  V  L  Y  *  L  V  F  F  V  N  L  L  I  C  R  V  R  Y  I  *  H  L  I  F  M  D  L  N  E  G  Q  Y  T  V  K  L  N  E  S  A  N  N  L  F  Y  P  K  H  S  S  H  G  Q  V  S  V  V  V  F  L  P  K  V  F  F  P  L  P  M  Q  V  *  L  S  L  I  L  A  S  R  V  L  S  I  L  C  *  F  V  V  L  *  V  F  L  S  V  K  T  K  Q  K  K  N  K  I  S  T  L  H  F  E  Q  I  L  S  D  H  G  R  N  I  C  S  P  T  W  N  Q  E  *   </second_frame>
            <third_frame>   F  K  K  N  L  E  L  F  I  V  T  H  L  S  L  C  *  S  Q  *  S  L  N  H  R  E  A  Y  F  H  Q  Q  L  T  H  Y  S  S  I  S  A  L  S  F  L  A  T  F  C  *  T  S  Y  S  F  S  S  I  D  S  C  K  L  V  I  A  L  L  K  *  L  I  F  L  Q  G  F  *  F  *  V  M  *  E  *  K  A  T  F  F  G  T  P  L  A  N  S  L  L  K  S  F  L  F  K  F  L  V  M  G  S  R  *  I  L  L  S  S  Y  T  H  L  V  K  L  T  L  N  H  *  K  S  T  F  S  I  N  G  V  S  L  N  S  *  F  L  V  F  L  S  P  N  S  F  I  R  *  Y  *  S  S  D  M  *  L  K  I  R  S  L  F  A  L  C  S  C  *  S  A  F  W  W  Q  L  V  F  S  L  Y  T  C  N  G  S  R  A  F  R  S  Q  P  L  I  R  D  L  C  R  W  S  T  S  F  P  F  V  K  F  C  F  F  F  I  S  Y  G  F  T  P  L  N  *  Y  C  F  W  S  Y  G  I  Q  I  G  L  F  D  I  S  L  D  I  Y  S  I  H  C  *  L  I  L  L  F  Y  T  N  L  Y  S  L  *  I  C  *  Y  V  E  L  D  I  Y  N  I  L  F  L  W  T  L  M  K  V  S  I  Q  L  N  *  M  N  Q  P  I  I  C  F  I  Q  N  T  L  V  M  V  K  *  V  L  L  S  S  C  P  K  F  F  F  L  C  L  C  K  S  S  *  V  *  Y  W  P  L  E  S  F  R  F  C  V  S  L  L  S  F  E  F  S  Y  L  S  K  R  N  K  K  R  T  K  F  P  P  F  I  S  N  K  F  *  V  I  M  E  E  T  F  V  P  L  R  G  I  K  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51932" stop="52132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWSSKCCCLPAQSFFSFAYASLVEFDIGLSSPFDSVLVCCPLSFLICQNETKKEQNFHPSFRTNFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="53889" PGL_stop="56541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53889" e_stop="53989"/>
            <exon e_start="54110" e_stop="54283"/>
            <exon e_start="54368" e_stop="54463"/>
            <exon e_start="54765" e_stop="54902"/>
            <exon e_start="54979" e_stop="55298"/>
            <exon e_start="55645" e_stop="55915"/>
            <exon e_start="56127" e_stop="56541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53889" e_stop="53989" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53990" i_stop="54109" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54110" e_stop="54283" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54284" i_stop="54367" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54368" e_stop="54463" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.888">
            <gDNA_intron_boundary i_start="54464" i_stop="54764" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54765" e_stop="54902" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.598" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54903" i_stop="54978" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54979" e_stop="55298" e_length="320"/>
          </exon>
          <intron i_serial="5" don_prob="0.854" acc_prob="0.952">
            <gDNA_intron_boundary i_start="55299" i_stop="55644" i_length="346"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55645" e_stop="55915" e_length="271"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55916" i_stop="56126" i_length="211"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56127" e_stop="56541" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53889" stop="53989"/>
              <exon start="54110" stop="54283"/>
              <exon start="54368" stop="54463"/>
              <exon start="54765" stop="54902"/>
              <exon start="54979" stop="55246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53890" stop="53989"/>
              <exon start="54110" stop="54283"/>
              <exon start="54368" stop="54463"/>
              <exon start="54765" stop="54902"/>
              <exon start="54979" stop="55224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54990" stop="55298"/>
              <exon start="55645" stop="55915"/>
              <exon start="56127" stop="56402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55088" stop="55298"/>
              <exon start="55645" stop="55915"/>
              <exon start="56127" stop="56541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG : GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG : GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG : CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG : GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA : GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA : GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</gDNA_template>
            <first_frame> L  T  Y  Q  H  V  M  F  H  K  G  Y  H  G  G  F  S  A  P  I  H  G  H  L  E  L  T  Q  I  G  R  L  S  R :   K  *  C  M  F  L  L  Y  I  L  S  E  R  L  S  Q  P  Q  *  L  L  S  F  T  I  S  I  T  V  L  H  L  N  F  P  N  R  K  S  S  I  *  R  N  L  P  H  I  I  T  T  S  F  F  W  A  S  W :   S  L  Y  A  V  F  L  A  F  L  L  Q  M  E  S  F  H  N  L  Q  C  T  Q  K  A  W  P  L  *  N  I  S :   F  Y  G  I  N  L  P  Q  Q  R  K  K  T  L  I  K  M  Q  I  L  A  N  Y  I  G  A  C  R  R  L  T  T  R  C  R  L  P  L  C  I  K  L  L  L  A  W :   D  *  K  S  *  K  R  P  Q  F  N  G  H  R  V  P  G  T  *  T  H  Q  S  T  R  Q  S  L  M  W  I  R  I  L  M  S  S  Y  Q  *  K  S  K  N  S  V  *  V  I  S  F  R  R  *  W  L  V  L  V  W  L  L  C  L  S  *  K  G  F  L  L  L  F  S  G  D  T  L  L  S  W  Q  *  R  A  C  Q  E  I  S  F  G  R  G  Y  Y  C  F  S  L  H  Q  V  E  D  T   : R  S  W  K  I  I  M  Q  H  L  S  R  Q  Y  L  S  R  Q  L  P  G  S  P  C  F  R  H  F  I  C  S  F  V  S  A  S  H  G  Y  Q  *  L  V  F  F  S  L  C  *  S  C  F  *  S  Q  C  A  S  I  C  F  P  S  S  S  K  E  H  I  Y  K  I  *  T  L  Q  N  M  K  K  P  L  Q  *  H  T  T  C  P  M  E :   I  K  I  L  R  E  D  Q  P  A  L  I  V  V  R  F  L  M  I  *  S  Q  E  A  V  G  R  L  G  V  H  A  A  Q  E  *  L  V  Q  L  L  P  L  L  M  K  S  S  Q  H  T  A  H  S  Y  L  K  G  L  I  V  Q  E  S  M  Y  *  E  E  K  E  A  P  D  S  M  A  R  D  L  K  *  N  K  L  P  A  L  S  H  L  N  L  V  K  M  I  A  V  R  L  P  S  S  I  N  K  Y  F  L  *  N  *  S  L  *  L  F  S  R  G  L  V  *  V  L  S  M  *  L  I  F  S  *  A  S  V  F </first_frame>
            <second_frame>  L  H  T  S  T  *  C  S  T  R  D  T  T  E  A  F  Q  P  Q  S  M  V  T  W  S  L  L  K  L  D  G  Y  Q   : G  N  D  A  C  S  S  S  I  Y  C  R  S  V  Y  P  S  H  N  D  C  C  P  L  L  F  R  S  Q  C  C  I  S  T  F  P  T  E  R  V  Q  S  K  E  T  F  L  I  S  L  R  P  P  S  F  G  L  L   : G  H  Y  M  R  S  S  W  H  S  S  F  K  W  S  H  S  T  I  S  N  A  H  K  K  L  G  H  S  E  T  S   : A  F  T  E  *  T  C  L  N  S  E  K  K  H  *  *  K  C  K  S  W  P  I  I  *  E  H  A  G  G  L  Q  R  D  A  D  S  P  C  V  S  N  S  F  W  P   : G  I  E  R  A  K  R  D  H  S  S  T  G  I  E  Y  R  V  H  R  R  T  S  R  R  D  S  L  *  C  G  *  G  Y  *  *  A  L  T  S  R  S  Q  R  T  A  S  K  *  S  P  S  G  V  N  G  W  C  L  C  G  C  Y  A  Y  L  E  K  D  S  F  F  C  S  L  G  I  L  C  F  H  G  N  R  E  L  A  R  K  S  V  L  G  E  D  I  I  A  F  H  C  T  K  *  K  I  Q  :  G  L  G  R  *  S  C  N  I  C  R  D  S  T  F  Q  D  N  C  L  V  H  L  V  S  D  I  L  F  A  P  L  F  R  H  H  M  D  T  N  S  W  C  S  F  P  F  V  D  H  A  S  S  P  S  A  P  V  F  A  S  Q  V  L  Q  R  S  T  F  T  R  S  R  R  C  R  I  *  R  S  P  C  N  S  I  Q  H  V  L  W   : R  S  R  S  S  G  K  T  S  L  H  *  *  W  *  G  S  *  *  Y  D  H  K  K  P  W  G  D  *  A  F  M  Q  P  K  S  N  *  F  N  S  Y  L  S  *  *  N  Q  V  N  T  Q  P  T  V  I  S  K  G  L  *  S  K  N  Q  C  T  K  R  R  K  K  P  Q  I  Q  W  Q  G  T  *  N  K  T  N  S  Q  P  S  A  I  *  T  W  S  K  *  S  R  S  V  F  H  L  V  S  T  N  I  F  C  E  I  R  V  S  S  C  S  R  E  V  L  S  K  S  *  V  C  D  *  S  F  P  R  H  L  C   </second_frame>
            <third_frame>   Y  I  P  A  R  D  V  P  Q  G  I  P  R  R  L  F  S  P  N  P  W  S  P  G  A  Y  S  N  W  T  V  I  K  :  E  M  M  H  V  P  P  L  Y  I  V  G  A  F  I  P  A  T  M  I  A  V  L  Y  Y  F  D  H  S  V  A  S  Q  L  S  Q  Q  K  E  F  N  L  K  K  P  S  S  Y  H  Y  D  L  L  L  L  G  F  L  :  V  I  I  C  G  L  L  G  I  P  P  S  N  G  V  I  P  Q  S  P  M  H  T  K  S  L  A  T  L  K  H  Q  :  L  L  R  N  K  L  A  S  T  A  K  K  N  I  D  K  N  A  N  L  G  Q  L  Y  R  S  M  Q  E  A  Y  N  E  M  Q  T  P  L  V  Y  Q  T  P  S  G  L  :  G  L  K  E  L  K  E  T  T  V  Q  R  A  S  S  T  G  Y  I  D  A  P  V  D  E  T  V  F  D  V  D  K  D  I  D  E  L  L  P  V  E  V  K  E  Q  R  L  S  N  L  L  Q  A  L  M  V  G  A  C  V  A  A  M  P  I  L  K  R  I  P  S  S  V  L  W  G  Y  F  A  F  M  A  I  E  S  L  P  G  N  Q  F  W  E  R  I  L  L  L  F  T  A  P  S  R  R  Y  K :   V  L  E  D  N  H  A  T  F  V  E  T  V  P  F  K  T  I  A  W  F  T  L  F  Q  T  F  Y  L  L  L  C  F  G  I  T  W  I  P  I  A  G  V  L  F  P  L  L  I  M  L  L  V  P  V  R  Q  Y  L  L  P  K  F  F  K  G  A  H  L  Q  D  L  D  A  A  E  Y  E  E  A  P  A  I  A  Y  N  M  S  Y  G  :  D  Q  D  P  Q  G  R  P  A  C  I  D  S  G  E  V  L  D  D  M  I  T  R  S  R  G  E  I  R  R  S  C  S  P  R  V  T  S  S  T  P  T  S  L  D  E  I  K  S  T  H  S  P  Q  L  S  Q  R  A  Y  S  P  R  I  N  V  L  R  G  E  R  S  P  R  F  N  G  K  G  L  E  I  K  Q  T  P  S  P  Q  P  S  K  L  G  Q  N  D  R  G  P  S  S  I  *  Y  Q  Q  I  F  F  V  K  L  E  S  L  V  V  L  E  R  S  C  L  S  L  K  Y  V  I  N  L  F  L  G  I  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53891" stop="53989"/>
                    <exon start="54110" stop="54283"/>
                    <exon start="54368" stop="54463"/>
                    <exon start="54765" stop="54902"/>
                    <exon start="54979" stop="55298"/>
                    <exon start="55645" stop="55915"/>
                    <exon start="56127" stop="56438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIPARDVPQGIPRRLFSPNPWSPGAYSNWTVIKEMMHVPPLYIVGAFIPATMIAVLYYFDHSVASQLSQQKEFNLKKPSSYHYDLLLLGFLVIICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLASTAKKNIDKNANLGQLYRSMQEAYNEMQTPLVYQTPSGLGLKELKETTVQRASSTGYIDAPVDETVFDVDKDIDELLPVEVKEQRLSNLLQALMVGACVAAMPILKRIPSSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDNHATFVETVPFKTIAWFTLFQTFYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAIAYNMSYGDQDPQGRPACIDSGEVLDDMITRSRGEIRRSCSPRVTSSTPTSLDEIKSTHSPQLSQRAYSPRINVLRGERSPRFNGKGLEIKQTPSPQPSKLGQNDRGPSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="60214" PGL_stop="66386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60214" e_stop="60373"/>
            <exon e_start="60459" e_stop="60536"/>
            <exon e_start="61439" e_stop="61579"/>
            <exon e_start="63209" e_stop="63285"/>
            <exon e_start="64182" e_stop="64346"/>
            <exon e_start="64606" e_stop="65067"/>
            <exon e_start="66363" e_stop="66386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60214" e_stop="60373" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60459" e_stop="60536" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61439" e_stop="61579" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.853">
            <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="63209" e_stop="63285" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64182" e_stop="64346" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64606" e_stop="65067" e_length="462"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65068" i_stop="66362" i_length="1295"/>
          </intron>
          <exon e_serial="7" e_score="0.708">
            <gDNA_exon_boundary e_start="66363" e_stop="66386" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60214" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60284" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60285" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61481" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64222" stop="64346"/>
              <exon start="64606" stop="64990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64346"/>
              <exon start="64606" stop="65067"/>
              <exon start="66363" stop="66386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG : GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG : AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG : AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA : AATGGAAAAGAAAAATGAATAAAA</gDNA_template>
            <first_frame> V  S  L  C  K  E  K  T  G  K  T  K  T  S  K  N  L  V  *  V  N  E  A  T  N  S  N  I  W  R  L  H  Y  S  T  I  L  *  V  R  W  L  G  C  C  S  C  *  Y  L  C  S  Q   : G  *  Y  I  E  S  W  L  W  R  I  Q  H  Q  M  G  I  V  L  A  A  S  P  I  S  I   : E  R  S  N  T  S  C  C  C  H  Y  I  F  W  S  Q  *  C  C  S  F  G  K  N  Q  *  K  T  T  C  P  T  *  G  I  *  G  K  P  T  K  N  D  T  T  F  *   : E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T  Q  :  N  G  K  E  K  *  I  K </first_frame>
            <second_frame>  S  H  C  A  K  K  K  Q  E  K  Q  K  H  R  R  I  *  F  K  *  M  R  P  Q  I  V  I  F  G  D  S  I  T  Q  Q  S  F  K  L  G  G  W  G  A  A  L  A  D  T  Y  A  R  K  :  A  D  I  L  N  R  G  Y  G  G  Y  N  T  R  W  A  L  F  L  L  H  H  L  F  P  L  :  N  A  P  T  H  P  V  A  V  T  I  F  F  G  A  N  D  A  A  L  L  G  R  T  S  E  R  Q  H  V  P  L  E  E  Y  K  E  N  L  R  K  M  I  Q  H  F  K  :  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V  H  K :   M  E  K  K  N  E  *   </second_frame>
            <third_frame>   L  I  V  Q  R  K  N  R  K  N  K  N  I  E  E  F  S  L  S  E  *  G  H  K  *  *  Y  L  E  T  P  L  L  N  N  P  L  S  *  V  V  G  V  L  L  L  L  I  L  M  L  A  R :   L  I  Y  *  I  V  A  M  A  D  T  T  P  D  G  H  C  S  C  C  I  T  Y  F  H  * :   T  L  Q  H  I  L  L  L  S  L  Y  F  L  E  P  M  M  L  L  F  W  E  E  P  V  K  D  N  M  S  H  L  R  N  I  R  K  T  Y  E  K  *  Y  N  I  L  R :   N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  T   : K  W  K  R  K  M  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60275" stop="60373"/>
                    <exon start="60459" stop="60536"/>
                    <exon start="61439" stop="61579"/>
                    <exon start="63209" stop="63285"/>
                    <exon start="64182" stop="64346"/>
                    <exon start="64606" stop="64780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGYGGYNTRWALFLLHHLFPLNAPTHPVAVTIFFGANDAALLGRTSERQHVPLEEYKENLRKMIQHFKKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64813" stop="65019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60214" e_stop="60373"/>
            <exon e_start="60459" e_stop="60536"/>
            <exon e_start="61439" e_stop="61579"/>
            <exon e_start="63209" e_stop="63285"/>
            <exon e_start="64182" e_stop="64346"/>
            <exon e_start="64606" e_stop="65063"/>
            <exon e_start="65804" e_stop="65831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60214" e_stop="60373" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60459" e_stop="60536" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61439" e_stop="61579" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.853">
            <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="63209" e_stop="63285" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64182" e_stop="64346" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64606" e_stop="65063" e_length="458"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65064" i_stop="65803" i_length="740"/>
          </intron>
          <exon e_serial="7" e_score="0.643">
            <gDNA_exon_boundary e_start="65804" e_stop="65831" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60214" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60284" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60285" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61481" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64222" stop="64346"/>
              <exon start="64606" stop="64990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64346"/>
              <exon start="64606" stop="65063"/>
              <exon start="65804" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG : GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG : AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG : AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTAC : ACTATAAAAATATAATACTAAACTAAAA</gDNA_template>
            <first_frame> V  S  L  C  K  E  K  T  G  K  T  K  T  S  K  N  L  V  *  V  N  E  A  T  N  S  N  I  W  R  L  H  Y  S  T  I  L  *  V  R  W  L  G  C  C  S  C  *  Y  L  C  S  Q   : G  *  Y  I  E  S  W  L  W  R  I  Q  H  Q  M  G  I  V  L  A  A  S  P  I  S  I   : E  R  S  N  T  S  C  C  C  H  Y  I  F  W  S  Q  *  C  C  S  F  G  K  N  Q  *  K  T  T  C  P  T  *  G  I  *  G  K  P  T  K  N  D  T  T  F  *   : E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T :   L  *  K  Y  N  T  K  L  K </first_frame>
            <second_frame>  S  H  C  A  K  K  K  Q  E  K  Q  K  H  R  R  I  *  F  K  *  M  R  P  Q  I  V  I  F  G  D  S  I  T  Q  Q  S  F  K  L  G  G  W  G  A  A  L  A  D  T  Y  A  R  K  :  A  D  I  L  N  R  G  Y  G  G  Y  N  T  R  W  A  L  F  L  L  H  H  L  F  P  L  :  N  A  P  T  H  P  V  A  V  T  I  F  F  G  A  N  D  A  A  L  L  G  R  T  S  E  R  Q  H  V  P  L  E  E  Y  K  E  N  L  R  K  M  I  Q  H  F  K  :  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V   : H  Y  K  N  I  I  L  N  *   </second_frame>
            <third_frame>   L  I  V  Q  R  K  N  R  K  N  K  N  I  E  E  F  S  L  S  E  *  G  H  K  *  *  Y  L  E  T  P  L  L  N  N  P  L  S  *  V  V  G  V  L  L  L  L  I  L  M  L  A  R :   L  I  Y  *  I  V  A  M  A  D  T  T  P  D  G  H  C  S  C  C  I  T  Y  F  H  * :   T  L  Q  H  I  L  L  L  S  L  Y  F  L  E  P  M  M  L  L  F  W  E  E  P  V  K  D  N  M  S  H  L  R  N  I  R  K  T  Y  E  K  *  Y  N  I  L  R :   N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  :  T  I  K  I  *  Y  *  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60275" stop="60373"/>
                    <exon start="60459" stop="60536"/>
                    <exon start="61439" stop="61579"/>
                    <exon start="63209" stop="63285"/>
                    <exon start="64182" stop="64346"/>
                    <exon start="64606" stop="64780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGYGGYNTRWALFLLHHLFPLNAPTHPVAVTIFFGANDAALLGRTSERQHVPLEEYKENLRKMIQHFKKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64813" stop="65019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62589" e_stop="63285"/>
            <exon e_start="64182" e_stop="64346"/>
            <exon e_start="64606" e_stop="65067"/>
            <exon e_start="66363" e_stop="66386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62589" e_stop="63285" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64182" e_stop="64346" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64606" e_stop="65067" e_length="462"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65068" i_stop="66362" i_length="1295"/>
          </intron>
          <exon e_serial="4" e_score="0.708">
            <gDNA_exon_boundary e_start="66363" e_stop="66386" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62589" stop="63285"/>
              <exon start="64182" stop="64283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62590" stop="63163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64222" stop="64346"/>
              <exon start="64606" stop="64990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64346"/>
              <exon start="64606" stop="65067"/>
              <exon start="66363" stop="66386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA : AATGGAAAAGAAAAATGAATAAAA</gDNA_template>
            <first_frame> D  V  Q  I  L  A  F  C  L  I  C  C  S  Y  S  C  *  N  G  R  F  L  A  *  V  S  D  F  T  *  N  P  N  Y  L  Q  R  K  *  K  I  I  Q  I  C  R  I  S  N  F  T  D  Y  S  L  P  Q  I  M  K  K  L  Q  C  R  K  M  *  M  L  N  W  H  K  Q  V  C  Y  Q  F  Q  K  K  I  G  I  S  R  L  S  I  S  Y  F  F  F  S  R  L  P  F  Q  F  Y  F  W  T  C  L  F  R  R  Y  K  R  R  K  F  L  E  H  I  H  F  P  S  I  *  *  S  *  Y  N  L  L  T  S  F  M  *  F  D  V  H  S  S  S  N  I  Y  H  L  M  T  N  E  I  N  P  I  Q  L  L  N  S  *  V  V  *  S  R  T  G  Y  T  R  P  L  S  S  I  M  L  Y  I  C  *  *  I  W  V  E  L  C  S  L  L  Y  I  S  F  I  L  S  *  H  R  N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  T   : K  W  K  R  K  M  N  K  </first_frame>
            <second_frame>  T  C  R  F  W  H  S  A  *  F  V  V  H  T  L  A  K  M  V  D  F  *  R  K  *  V  T  S  L  K  T  Q  I  I  C  K  G  N  K  R  S  F  R  F  A  G  Y  L  T  L  P  T  I  H  Y  H  K  *  *  K  N  Y  N  A  G  K  C  E  C  *  I  G  I  S  R  Y  V  T  S  F  K  K  K  L  A  *  A  G  *  V  F  P  T  F  S  F  Q  D  F  H  S  S  F  T  F  G  R  A  C  S  E  D  I  K  D  V  N  S  *  N  I  F  I  S  Q  V  Y  S  D  L  D  T  T  C  *  R  V  L  C  S  L  M  F  T  L  L  V  I  S  I  I  L  *  Q  M  K  S  I  P  S  N  C  S  I  P  E  L  F  R  V  E  Q  D  T  L  G  P  C  L  L  L  C  Y  I  Y  V  N  K  S  G  L  S  S  A  L  F  C  I  S  H  S  F  C  P  N  T  E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T  Q  :  N  G  K  E  K  *  I  K </second_frame>
            <third_frame>   R  A  D  S  G  I  L  P  N  L  L  F  I  L  L  L  K  W  S  I  S  S  V  S  E  *  L  H  L  K  P  K  L  F  A  K  E  I  K  D  H  S  D  L  Q  D  I  *  L  Y  R  L  F  I  T  T  N  N  E  K  I  T  M  Q  E  N  V  N  V  K  L  A  *  A  G  M  L  P  V  S  K  K  N  W  H  K  Q  A  E  Y  F  L  L  F  L  F  K  T  S  I  P  V  L  L  L  D  V  L  V  Q  K  I  *  K  T  *  I  P  R  T  Y  S  F  P  K  Y  I  V  I  L  I  Q  P  A  D  E  F  Y  V  V  *  C  S  L  F  *  *  Y  L  S  S  Y  D  K  *  N  Q  S  H  P  I  A  Q  F  L  S  C  L  E  *  N  R  I  H  *  A  L  V  F  Y  Y  A  I  Y  M  L  I  N  L  G  *  A  L  L  S  F  V  Y  L  I  H  F  V  L  T  Q  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V  H  K :   M  E  K  K  N  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63164" stop="63285"/>
                    <exon start="64182" stop="64346"/>
                    <exon start="64606" stop="64780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLSFVYLIHFVLTQKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64813" stop="65019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="71186" PGL_stop="75071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71190" e_stop="71266"/>
            <exon e_start="71485" e_stop="71664"/>
            <exon e_start="72914" e_stop="72988"/>
            <exon e_start="73072" e_stop="73390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71190" e_stop="71266" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71485" e_stop="71664" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72914" e_stop="72988" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73072" e_stop="73390" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71190" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280055" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71216" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71216" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71220" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71225" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281562" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71227" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71227" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71239" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71530" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71572" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCACACATCAAAGGGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG : GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG : GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAAC</gDNA_template>
            <first_frame> S  S  H  I  K  G  L  F  N  G  V  S  L  L  C  Y  F  G  S  I  L  R  R  R  P  W :   *  T  F  L  K  R  R  R  H  T  A  S  P  R  S  A  R  S  T  P  C  I  R  *  R  N  T  R  R  E  K  I  A  *  L  L  K  E  S  V  V  M  I  A  S  S  Q  V  T  V  D  R  Q  N  L  S  F  T  K  R :   Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  V  L  I  L  S  C  *  C  N  D  A  *  A  M  A  I  K  F  N  *  T  V  L  G  C  I  N  L  N </first_frame>
            <second_frame>  L  H  T  S  K  G  Y  S  T  A  S  V  F  S  A  I  S  V  P  F  S  A  G  D  H   : G  E  R  S  *  N  E  E  D  I  L  Q  V  Q  G  V  Q  E  A  H  L  A  *  G  D  A  I  Q  E  G  K  R  *  L  S  C  S  R  K  A  S  L  *  S  Q  A  V  R  L  R  W  T  D  K  T  C  L  S  Q  K   : G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  K  F  *  F  C  L  V  D  A  M  M  L  K  L  W  Q  *  S  S  T  E  L  S  L  A  A  L  I  *   </second_frame>
            <third_frame>   F  T  H  Q  R  V  I  Q  R  R  Q  S  S  L  L  F  R  F  H  S  P  P  A  T  M  :  V  N  V  P  K  T  K  K  T  Y  C  K  S  K  E  C  K  K  H  T  L  H  K  V  T  Q  Y  K  K  G  K  D  S  L  A  A  Q  G  K  R  R  Y  D  R  K  Q  S  G  Y  G  G  Q  T  K  P  V  F  H  K  K  :  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T  S  F  D  F  V  L  L  M  Q  *  C  L  S  Y  G  N  K  V  Q  L  N  C  P  W  L  H  *  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71192" stop="71266"/>
                    <exon start="71485" stop="71664"/>
                    <exon start="72914" stop="72988"/>
                    <exon start="73072" stop="73131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTHQRVIQRRQSSLLFRFHSPPATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71206" e_stop="71266"/>
            <exon e_start="71485" e_stop="71664"/>
            <exon e_start="72914" e_stop="72988"/>
            <exon e_start="73072" e_stop="73303"/>
            <exon e_start="74066" e_stop="74079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71206" e_stop="71266" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71485" e_stop="71664" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72914" e_stop="72988" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73072" e_stop="73303" e_length="232"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762"/>
          </intron>
          <exon e_serial="5" e_score="0.571">
            <gDNA_exon_boundary e_start="74066" e_stop="74079" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280055" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71216" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281562" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71227" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71234" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
              <exon start="74066" stop="74079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71239" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71501" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
              <exon start="74066" stop="74079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71572" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG : GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG : GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA : CCCAAAACAAATAG</gDNA_template>
            <first_frame> G  Y  S  T  A  S  V  F  S  A  I  S  V  P  F  S  A  G  D  H   : G  E  R  S  *  N  E  E  D  I  L  Q  V  Q  G  V  Q  E  A  H  L  A  *  G  D  A  I  Q  E  G  K  R  *  L  S  C  S  R  K  A  S  L  *  S  Q  A  V  R  L  R  W  T  D  K  T  C  L  S  Q  K   : G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  N :   P  K  Q  I  </first_frame>
            <second_frame>  V  I  Q  R  R  Q  S  S  L  L  F  R  F  H  S  P  P  A  T  M  :  V  N  V  P  K  T  K  K  T  Y  C  K  S  K  E  C  K  K  H  T  L  H  K  V  T  Q  Y  K  K  G  K  D  S  L  A  A  Q  G  K  R  R  Y  D  R  K  Q  S  G  Y  G  G  Q  T  K  P  V  F  H  K  K  :  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T   : T  Q  N  K  * </second_frame>
            <third_frame>   L  F  N  G  V  S  L  L  C  Y  F  G  S  I  L  R  R  R  P  W :   *  T  F  L  K  R  R  R  H  T  A  S  P  R  S  A  R  S  T  P  C  I  R  *  R  N  T  R  R  E  K  I  A  *  L  L  K  E  S  V  V  M  I  A  S  S  Q  V  T  V  D  R  Q  N  L  S  F  T  K  R :   Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  :  P  K  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71207" stop="71266"/>
                    <exon start="71485" stop="71664"/>
                    <exon start="72914" stop="72988"/>
                    <exon start="73072" stop="73131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIQRRQSSLLFRFHSPPATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71206" e_stop="71266"/>
            <exon e_start="71485" e_stop="71664"/>
            <exon e_start="72914" e_stop="72988"/>
            <exon e_start="73072" e_stop="73303"/>
            <exon e_start="74703" e_stop="74732"/>
            <exon e_start="75007" e_stop="75071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.000" e_score="0.533"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71206" e_stop="71266" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71485" e_stop="71664" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72914" e_stop="72988" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73072" e_stop="73303" e_length="232"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="73304" i_stop="74702" i_length="1399"/>
          </intron>
          <exon e_serial="5" e_score="0.533">
            <gDNA_exon_boundary e_start="74703" e_stop="74732" e_length="30"/>
          </exon>
          <intron i_serial="5" don_prob="0.874" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74733" i_stop="75006" i_length="274"/>
          </intron>
          <exon e_serial="6" e_score="0.615">
            <gDNA_exon_boundary e_start="75007" e_stop="75071" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280055" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71216" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281562" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71227" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71236" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
              <exon start="74703" stop="74732"/>
              <exon start="75007" stop="75071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71239" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71572" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG : GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG : GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA : AAAACTCAAACACCAATCCAACACAGATAG : ATAATAATAAAAAATAATAAAAATCATCAAAATATTATATTTATTAAAATAATATAAGATACAAT</gDNA_template>
            <first_frame> G  Y  S  T  A  S  V  F  S  A  I  S  V  P  F  S  A  G  D  H   : G  E  R  S  *  N  E  E  D  I  L  Q  V  Q  G  V  Q  E  A  H  L  A  *  G  D  A  I  Q  E  G  K  R  *  L  S  C  S  R  K  A  S  L  *  S  Q  A  V  R  L  R  W  T  D  K  T  C  L  S  Q  K   : G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  K :   K  L  K  H  Q  S  N  T  D  R :   *  *  *  K  I  I  K  I  I  K  I  L  Y  L  L  K  *  Y  K  I  Q  </first_frame>
            <second_frame>  V  I  Q  R  R  Q  S  S  L  L  F  R  F  H  S  P  P  A  T  M  :  V  N  V  P  K  T  K  K  T  Y  C  K  S  K  E  C  K  K  H  T  L  H  K  V  T  Q  Y  K  K  G  K  D  S  L  A  A  Q  G  K  R  R  Y  D  R  K  Q  S  G  Y  G  G  Q  T  K  P  V  F  H  K  K  :  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T   : K  N  S  N  T  N  P  T  Q  I   : D  N  N  K  K  *  *  K  S  S  K  Y  Y  I  Y  *  N  N  I  R  Y  N </second_frame>
            <third_frame>   L  F  N  G  V  S  L  L  C  Y  F  G  S  I  L  R  R  R  P  W :   *  T  F  L  K  R  R  R  H  T  A  S  P  R  S  A  R  S  T  P  C  I  R  *  R  N  T  R  R  E  K  I  A  *  L  L  K  E  S  V  V  M  I  A  S  S  Q  V  T  V  D  R  Q  N  L  S  F  T  K  R :   Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  :  K  T  Q  T  P  I  Q  H  R  *  :  I  I  I  K  N  N  K  N  H  Q  N  I  I  F  I  K  I  I  *  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71207" stop="71266"/>
                    <exon start="71485" stop="71664"/>
                    <exon start="72914" stop="72988"/>
                    <exon start="73072" stop="73131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIQRRQSSLLFRFHSPPATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="71186" e_stop="71266"/>
            <exon e_start="71485" e_stop="71664"/>
            <exon e_start="72914" e_stop="72988"/>
            <exon e_start="73072" e_stop="73303"/>
            <exon e_start="74999" e_stop="75038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.675"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71186" e_stop="71266" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71485" e_stop="71664" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71665" i_stop="72913" i_length="1249"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72914" e_stop="72988" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73072" e_stop="73303" e_length="232"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73304" i_stop="74998" i_length="1695"/>
          </intron>
          <exon e_serial="5" e_score="0.675">
            <gDNA_exon_boundary e_start="74999" e_stop="75038" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71186" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
              <exon start="74999" stop="75038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280055" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71216" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71217" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71226" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281562" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71227" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71239" stop="71266"/>
              <exon start="71485" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71572" stop="71664"/>
              <exon start="72914" stop="72988"/>
              <exon start="73072" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTCTTCACACATCAAAGGGTTATTCAACGGCGTCAGTCTTCTCTGCTATTTCGGTTCCATTCTCCGCCGGCGACCATG : GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAG : GCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA : AACATTATATAATAATAAAAAATAATAAAAATCATCAAAA</gDNA_template>
            <first_frame> N  L  F  T  H  Q  R  V  I  Q  R  R  Q  S  S  L  L  F  R  F  H  S  P  P  A  T  M  :  V  N  V  P  K  T  K  K  T  Y  C  K  S  K  E  C  K  K  H  T  L  H  K  V  T  Q  Y  K  K  G  K  D  S  L  A  A  Q  G  K  R  R  Y  D  R  K  Q  S  G  Y  G  G  Q  T  K  P  V  F  H  K  K  :  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T   : K  H  Y  I  I  I  K  N  N  K  N  H  Q   </first_frame>
            <second_frame>  I  S  S  H  I  K  G  L  F  N  G  V  S  L  L  C  Y  F  G  S  I  L  R  R  R  P  W :   *  T  F  L  K  R  R  R  H  T  A  S  P  R  S  A  R  S  T  P  C  I  R  *  R  N  T  R  R  E  K  I  A  *  L  L  K  E  S  V  V  M  I  A  S  S  Q  V  T  V  D  R  Q  N  L  S  F  T  K  R :   Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  :  N  I  I  *  *  *  K  I  I  K  I  I  K  </second_frame>
            <third_frame>   S  L  H  T  S  K  G  Y  S  T  A  S  V  F  S  A  I  S  V  P  F  S  A  G  D  H   : G  E  R  S  *  N  E  E  D  I  L  Q  V  Q  G  V  Q  E  A  H  L  A  *  G  D  A  I  Q  E  G  K  R  *  L  S  C  S  R  K  A  S  L  *  S  Q  A  V  R  L  R  W  T  D  K  T  C  L  S  Q  K   : G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  K :   T  L  Y  N  N  K  K  *  *  K  S  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71186" stop="71266"/>
                    <exon start="71485" stop="71664"/>
                    <exon start="72914" stop="72988"/>
                    <exon start="73072" stop="73131"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFTHQRVIQRRQSSLLFRFHSPPATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="71254" e_stop="71266"/>
            <exon e_start="71485" e_stop="72226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71254" e_stop="71266" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="71485" e_stop="72226" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71254" stop="71266"/>
              <exon start="71485" stop="72226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71254" stop="71266"/>
              <exon start="71485" stop="72003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71255" stop="71266"/>
              <exon start="71485" stop="72037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGGCGACCATG : GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTT</gDNA_template>
            <first_frame> A  G  D  H   : G  E  R  S  *  N  E  E  D  I  L  Q  V  Q  G  V  Q  E  A  H  L  A  *  G  D  A  I  Q  E  G  K  R  *  L  S  C  S  R  K  A  S  L  *  S  Q  A  V  R  L  R  W  T  D  K  T  C  L  S  Q  K  G  D  K  R  S  L  A  Y  N  N  F  H  V  S  I  P  S  *  Y  I  L  A  I  *  F  R  R  S  I  S  T  C  I  D  P  I  I  P  F  L  T  V  V  A  N  S  I  I  K  Y  T  Y  L  T  T  N  N  D  R  T  K  T  I  I  E  L  H  N  S  N  L  S  Y  T  A  L  N  N  H  I  P  V  W  I  K  L  I  I  V  T  A  K  L  W  L  *  I  K  S  R  Y  K  L  I  C  V  L  C  G  C  K  F  *  T  V  *  I  I  F  F  L  L  I  L  Y  F  R  M  L  L  S  F  N  S  K  K  Y  D  I  H  Y  M  R  D  V  C  M  K  I  L  I  H  L  I  K  N  S  I  T  I  V  F  F  L  M  Y  K  I  F  A  K  I  *  M  V  S  K  L  *  M  D  C  W  S  *  Y  I   </first_frame>
            <second_frame>  P  A  T  M  :  V  N  V  P  K  T  K  K  T  Y  C  K  S  K  E  C  K  K  H  T  L  H  K  V  T  Q  Y  K  K  G  K  D  S  L  A  A  Q  G  K  R  R  Y  D  R  K  Q  S  G  Y  G  G  Q  T  K  P  V  F  H  K  K  V  I  N  V  L  *  H  T  T  T  S  M  F  Q  F  Q  A  S  T  Y  W  L  Y  N  L  E  D  P  F  L  L  V  L  I  Q  *  S  H  F  *  L  L  *  L  I  L  *  L  S  I  P  T  L  P  P  I  M  T  E  L  K  L  *  L  N  Y  I  I  V  T  *  A  T  L  H  *  I  I  I  Y  L  F  G  *  S  *  S  L  S  L  Q  N  F  G  Y  K  L  S  L  G  T  N  *  F  V  S  C  V  V  V  S  S  K  L  F  R  *  Y  F  S  Y  *  Y  Y  I  L  E  C  Y  Y  L  L  I  Q  R  N  M  T  F  I  T  *  G  M  F  V  *  R  F  *  Y  T  *  L  K  I  A  L  L  *  Y  F  F  *  C  I  R  Y  L  L  K  F  E  W  C  Q  N  S  K  W  I  V  G  L  S  T  F  </second_frame>
            <third_frame>   R  R  P  W :   *  T  F  L  K  R  R  R  H  T  A  S  P  R  S  A  R  S  T  P  C  I  R  *  R  N  T  R  R  E  K  I  A  *  L  L  K  E  S  V  V  M  I  A  S  S  Q  V  T  V  D  R  Q  N  L  S  F  T  K  R  *  *  T  F  S  S  I  Q  Q  L  P  C  F  N  S  K  L  V  H  I  G  Y  I  I  *  K  I  H  F  Y  L  Y  *  S  N  N  P  I  F  N  C  C  S  *  F  Y  N  *  V  Y  L  P  Y  H  Q  *  *  P  N  *  N  Y  N  *  T  T  *  *  *  P  E  L  H  C  I  K  *  S  Y  T  C  L  D  K  A  D  H  C  H  C  K  T  L  V  I  N  *  V  *  V  Q  I  N  L  C  L  V  W  L  *  V  L  N  C  L  D  N  I  F  L  I  D  I  I  F  *  N  A  T  I  F  *  F  K  E  I  *  H  S  L  H  E  G  C  L  Y  E  D  F  D  T  L  D  *  K  *  H  Y  Y  S  I  F  F  N  V  *  D  I  C  *  N  L  N  G  V  K  T  L  N  G  L  L  V  L  V  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71736" stop="71951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRSISTCIDPIIPFLTVVANSIIKYTYLTTNNDRTKTIIELHNSNLSYTALNNHIPVWIKLIIVTAKLWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71255" stop="71266"/>
                    <exon start="71485" stop="71682"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKVINVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="72579" e_stop="73303"/>
            <exon e_start="74066" e_stop="74100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.999"/>
          <exon-only e_score="0.543"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="72579" e_stop="73303" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762"/>
          </intron>
          <exon e_serial="2" e_score="0.543">
            <gDNA_exon_boundary e_start="74066" e_stop="74100" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72579" stop="73303"/>
              <exon start="74066" stop="74100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72888" stop="73289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA : CCCAAAACAAATAGGGCTTTGTGGGGGCATACCTA</gDNA_template>
            <first_frame> F  T  Y  N  *  L  L  L  I  N  K  L  A  S  I  F  A  R  C  *  F  N  M  W  C  L  N  T  N  S  S  H  L  S  Q  I  G  D  R  F  L  *  I  Q  *  L  I  N  I  L  *  L  V  T  *  S  V  *  I  *  I  W  N  S  F  D  S  *  R  K  R  E  R  M  D  L  Q  L  L  S  V  V  V  G  L  Y  V  S  M  F  D  I  Q  G  W  F  L  Y  H  *  F  V  S  I  F  L  S  P  F  Q  N  R  Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R  L  F  T  D  K  S  L  L  C  S  C  I  S  I  T  I  K  K  N  I  H  C  S  *  C  C  A  E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  N :   P  K  Q  I  G  L  C  G  G  I  P  </first_frame>
            <second_frame>  S  H  I  T  N  S  Y  *  *  I  N  *  L  Q  Y  L  Q  G  V  S  S  T  C  G  V  *  I  L  I  Q  A  T  *  A  K  *  A  I  D  S  S  K  S  N  N  *  L  T  F  Y  S  *  *  L  D  L  F  K  F  K  Y  G  I  H  L  I  L  K  E  R  G  R  E  W  I  S  N  Y  *  A  S  *  L  V  C  M  *  A  C  L  T  F  K  A  G  F  F  I  T  D  L  C  L  S  F  F  H  H  S  K  T  G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q  G  C  L  L  I  N  L  Y  S  A  V  A  F  P  L  L  L  K  K  I  F  I  V  L  D  V  V  Q  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T   : T  Q  N  K  *  G  F  V  G  A  Y  L </second_frame>
            <third_frame>   H  I  *  L  T  P  I  D  K  *  I  S  F  N  I  C  K  V  L  V  Q  H  V  V  F  K  Y  *  F  K  P  P  K  P  N  R  R  *  I  P  L  N  P  I  I  N  *  H  F  I  V  S  D  L  I  C  L  N  L  N  M  E  F  I  *  F  L  K  K  E  G  E  N  G  S  P  I  I  K  R  R  S  W  S  V  C  E  H  V  *  H  S  R  L  V  S  L  S  L  I  C  V  Y  L  S  F  T  I  P  K  Q  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  V  V  Y  *  *  I  S  T  L  Q  L  H  F  H  Y  Y  *  K  K  Y  S  L  F  L  M  L  C  R  G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  :  P  K  T  N  R  A  L  W  G  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72841" stop="73131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACLTFKAGFFITDLCLSFFHHSKTGKDHKEDCLEVAMPKLQTYVATPNQGCLLINLYSAVAFPLLLKKIFIVLDVVQRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73040" stop="73273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLFLMLCRGASILRLAETRKEKEHLFFRLLVKQNLISLFCSFTVWIFCYIEGSSVASVIQFIIITCSIRYIIRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="72507" e_stop="72988"/>
            <exon e_start="73072" e_stop="73301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="72507" e_stop="72988" e_length="482"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73072" e_stop="73301" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72507" stop="72988"/>
              <exon start="73072" stop="73301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72739" stop="72988"/>
              <exon start="73072" stop="73300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285146" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAC</gDNA_template>
            <first_frame> L  T  C  S  V  K  S  S  K  D  I  Y  V  I  N  C  L  S  L  V  *  V  L  V  F  T  Y  N  *  L  L  L  I  N  K  L  A  S  I  F  A  R  C  *  F  N  M  W  C  L  N  T  N  S  S  H  L  S  Q  I  G  D  R  F  L  *  I  Q  *  L  I  N  I  L  *  L  V  T  *  S  V  *  I  *  I  W  N  S  F  D  S  *  R  K  R  E  R  M  D  L  Q  L  L  S  V  V  V  G  L  Y  V  S  M  F  D  I  Q  G  W  F  L  Y  H  *  F  V  S  I  F  L  S  P  F  Q  N  R  Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  </first_frame>
            <second_frame>  S  L  V  V  L  K  A  L  K  T  F  M  L  L  I  V  Y  L  *  F  K  Y  L  Y  S  H  I  T  N  S  Y  *  *  I  N  *  L  Q  Y  L  Q  G  V  S  S  T  C  G  V  *  I  L  I  Q  A  T  *  A  K  *  A  I  D  S  S  K  S  N  N  *  L  T  F  Y  S  *  *  L  D  L  F  K  F  K  Y  G  I  H  L  I  L  K  E  R  G  R  E  W  I  S  N  Y  *  A  S  *  L  V  C  M  *  A  C  L  T  F  K  A  G  F  F  I  T  D  L  C  L  S  F  F  H  H  S  K  T  G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N </second_frame>
            <third_frame>   H  L  *  C  *  K  L  *  R  H  L  C  Y  *  L  F  I  F  S  L  S  T  C  I  H  I  *  L  T  P  I  D  K  *  I  S  F  N  I  C  K  V  L  V  Q  H  V  V  F  K  Y  *  F  K  P  P  K  P  N  R  R  *  I  P  L  N  P  I  I  N  *  H  F  I  V  S  D  L  I  C  L  N  L  N  M  E  F  I  *  F  L  K  K  E  G  E  N  G  S  P  I  I  K  R  R  S  W  S  V  C  E  H  V  *  H  S  R  L  V  S  L  S  L  I  C  V  Y  L  S  F  T  I  P  K  Q  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72942" stop="72988"/>
                    <exon start="73072" stop="73273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCNAKVANICRNTQSRGASILRLAETRKEKEHLFFRLLVKQNLISLFCSFTVWIFCYIEGSSVASVIQFIIITCSIRYIIRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72851" stop="72988"/>
                    <exon start="73072" stop="73131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSRLVSLSLICVYLSFTIPKQAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="76814" PGL_stop="77771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76814" e_stop="76818"/>
            <exon e_start="76904" e_stop="76995"/>
            <exon e_start="77081" e_stop="77128"/>
            <exon e_start="77331" e_stop="77771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.946" e_score="0.600"/>
          <exon-intron don_prob="0.900" acc_prob="0.971" e_score="0.935"/>
          <exon-intron don_prob="0.932" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="76814" e_stop="76818" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76819" i_stop="76903" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="76904" e_stop="76995" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.971">
            <gDNA_intron_boundary i_start="76996" i_stop="77080" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77081" e_stop="77128" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.915">
            <gDNA_intron_boundary i_start="77129" i_stop="77330" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="77331" e_stop="77771" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76814" stop="76818"/>
              <exon start="76904" stop="76995"/>
              <exon start="77081" stop="77128"/>
              <exon start="77331" stop="77771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76941" stop="76995"/>
              <exon start="77081" stop="77128"/>
              <exon start="77331" stop="77679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTG : CGGTTTCCTTGGTTTCGAATTGGATACTTCTTTCTGTGGACAGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG : GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG : GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTTAAACTTCTGGTTTGTTAGATGTACATTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATATAACTATTCACTT</gDNA_template>
            <first_frame> V  C :   G  F  L  G  F  E  L  D  T  S  F  C  G  Q  E  F  M  L  F  S  S  G  L  F  M  P  A  F  Q  S   : G  G  P  I  H  S  L  I  F  H  L  Q  F  H  L  C   : G  T  C  W  W  H  L  C  T  Y  H  A  M  V  F  L  F  W  *  *  S  *  N  T  I  C  F  R  S  G  F  L  S  L  I  S  V  Q  D  D  T  T  R  F  H  P  N  Q  V  R  I  G  Y  M  Y  P  R  C  T  K  A  K  *  Q  I  F  Q  L  S  R  R  L  *  Q  L  V  F  *  T  P  N  L  D  F  F  V  L  F  S  G  R  N  D  E  M  E  K  K  K  V  I  *  Q  S  S  C  E  S  L  E  V  *  A  K  K  K  *  N  T  V  I  *  T  S  G  L  L  D  V  H  F  G  V  T  M  E  T  E  I  F  L  F  I  *  L  F  T  </first_frame>
            <second_frame>  F   : A  V  S  L  V  S  N  W  I  L  L  S  V  D  R  S  L  C  Y  F  P  V  G  C  S  C  L  H  F  N  L  :  V  A  L  S  I  P  *  S  F  I  C  S  F  T  F  V  :  V  L  V  G  G  I  Y  A  H  T  M  L  W  C  F  C  F  G  N  E  A  E  T  P  F  A  F  E  V  V  S  S  V  L  S  V  C  K  M  I  Q  R  A  S  I  P  T  K  S  G  S  A  I  C  I  L  V  V  L  R  P  N  N  K  F  F  S  F  Q  D  G  Y  S  S  S  C  F  E  H  Q  T  W  I  F  L  F  F  F  L  E  G  T  T  K  W  K  K  K  K  L  F  S  K  V  V  V  N  L  *  K  F  R  Q  K  K  N  K  I  Q  *  F  K  L  L  V  C  *  M  Y  I  L  G  *  L  W  K  Q  R  F  S  Y  L  Y  N  Y  S  L </second_frame>
            <third_frame>   L  :  R  F  P  W  F  R  I  G  Y  F  F  L  W  T  G  V  Y  V  I  F  Q  W  V  V  H  A  C  I  S  I  W :   W  P  Y  P  F  L  D  L  S  S  A  V  S  P  L  W :   Y  L  L  V  A  F  M  H  I  P  C  Y  G  V  F  V  L  V  M  K  L  K  H  H  L  L  S  K  W  F  P  Q  S  Y  Q  C  A  R  *  Y  N  A  L  P  S  Q  P  S  Q  D  R  L  Y  V  S  S  L  Y  *  G  Q  I  T  N  F  S  A  F  K  T  A  I  A  A  R  V  L  N  T  K  L  G  F  F  C  S  F  F  W  K  E  R  R  N  G  K  K  K  S  Y  L  A  K  *  L  *  I  F  R  S  L  G  K  K  K  I  K  Y  S  D  L  N  F  W  F  V  R  C  T  F  W  G  N  Y  G  N  R  D  F  L  I  Y  I  T  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77102" stop="77128"/>
                    <exon start="77331" stop="77657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFICSFTFVVLVGGIYAHTMLWCFCFGNEAETPFAFEVVSSVLSVCKMIQRASIPTKSGSAICILVVLRPNNKFFSFQDGYSSSCFEHQTWIFLFFFLEGTTKWKKKKLFSKVVVNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="79667" PGL_stop="82999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79667" e_stop="79976"/>
            <exon e_start="80098" e_stop="80241"/>
            <exon e_start="80760" e_stop="80921"/>
            <exon e_start="81013" e_stop="81096"/>
            <exon e_start="81757" e_stop="81945"/>
            <exon e_start="82146" e_stop="82236"/>
            <exon e_start="82385" e_stop="82444"/>
            <exon e_start="82694" e_stop="82812"/>
            <exon e_start="82946" e_stop="82999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79667" e_stop="79976" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80098" e_stop="80241" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.877">
            <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80760" e_stop="80921" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81013" e_stop="81096" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81757" e_stop="81945" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.975">
            <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82146" e_stop="82236" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82385" e_stop="82444" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.735">
            <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82694" e_stop="82812" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82946" e_stop="82999" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79667" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79683" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79699" stop="79975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79703" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81096"/>
              <exon start="81757" stop="81833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79703" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79703" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79707" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79707" stop="79976"/>
              <exon start="80098" stop="80122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79734" stop="79976"/>
              <exon start="80098" stop="80173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79757" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81096"/>
              <exon start="81757" stop="81945"/>
              <exon start="82146" stop="82191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79764" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81096"/>
              <exon start="81757" stop="81818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79765" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79765" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79767" stop="79976"/>
              <exon start="80098" stop="80233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79804" stop="79976"/>
              <exon start="80098" stop="80222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81037" stop="81096"/>
              <exon start="81757" stop="81945"/>
              <exon start="82146" stop="82236"/>
              <exon start="82385" stop="82444"/>
              <exon start="82694" stop="82812"/>
              <exon start="82946" stop="82999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTGTTACCCTTTGAGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG : TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA : GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG : CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG : GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG : GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG : GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT : TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT : GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</gDNA_template>
            <first_frame> L  L  L  P  F  E  Q  T  C  F  P  I  F  I  A  P  K  N  P  F  F  S  F  T  S  L  N  W  V  T  E  S  S  V  L  F  F  L  C  H  G  S  V  S  V  S  N  S  I  F  S  G  I  S  I  C  F  S  K  N  *  I  Y  K  I  V  S  W  K  *  *  *  P  I  C  *  N  Y  P  K  E  V  F  I  S  L  L  C  F  E  K  F  Q  *  A  F  I  H  I  H  I  *  *   : V  D  *  G  F  N  *  W  E  R  F  D  G  I  *  I  R  R  F  S  *  F  L  V  G  W  C  *  *  S  F  D  *  C  F  S  C  S  F  E  S  *  R  R  N  L  *  R   : S  S  G  I  G  K  G  N  D  K  A  L  Q  T  S  *  R  F  R  *  R  S  *  Y  C  W  D  R  R  G  W  S  K  H  G  E  Y  L  N  R  C  L  N  S  C  C  S  L  W  C  K  S  S  Q   : A  R  E  *  I  Q  F  I  R  L  W  E  R  R  C  I  G  R  T  R  C  C  H  *  A  G  P  *   : G  G  E  R  V  C  K  S  S  W  N  W  F  H  D  V  S  D  L  P  S  G  N  E  D  R  Q  T  Y  Q  K  K  A  E  S  K  D  G  V  Q  H  L  G  T  Y  V  E  P  S  K  S  A  V  C  C  S  R  S  L  Q  R  R  P   : G  P  *  N  G  *  S  I  A  K  I  W  H  E  K  S  I  G  C  S  L  R  R  P  R  *  D  E  S  S  W :   P  W  I  S  P  *  R  H  T  R  *  Y  *  E  V  L  L  *  S  I :   G  L  W  H  P  S  L  H  S  *  K  P  T  R  W  R  S  R  V  Q  C  R  D  A  Q  T  C  A  V  R  R  K  R  V  N  C  *  C  I   : C  T  K  C  I  S  C  S  P  G  K  W  T  R  *  *  S  G  </first_frame>
            <second_frame>  F  C  Y  P  L  S  K  L  V  S  P  Y  L  L  H  P  K  I  P  S  S  A  S  L  H  *  I  G  *  L  N  H  L  F  Y  S  S  S  A  M  A  L  F  Q  C  R  I  P  F  S  A  V  S  P  S  V  S  P  R  I  E  F  T  K  L  F  L  G  N  S  S  N  P  F  V  K  T  T  Q  K  K  F  S  S  L  C  Y  A  L  K  N  S  N  K  H  S  S  I  S  T  F  S  E  :  L  I  E  A  L  I  S  G  K  D  L  T  E  S  E  S  E  D  S  L  D  F  L  L  D  G  A  D  E  A  L  I  S  A  F  L  V  L  L  R  A  K  G  E  T  F  E  E  :  V  V  G  L  A  R  A  M  I  K  H  C  R  Q  V  E  G  L  G  D  A  V  D  I  V  G  T  G  G  D  G  A  N  T  V  N  I  S  T  G  A  S  I  L  A  A  A  C  G  A  K  V  A  K  :  Q  G  N  R  S  S  S  S  A  C  G  S  A  D  V  L  E  E  L  G  V  A  I  E  L  D  P  E  :  G  V  K  E  C  V  N  Q  A  G  I  G  F  M  M  S  P  I  Y  H  P  A  M  K  I  V  R  P  I  R  K  K  L  K  V  K  T  V  F  N  I  L  G  P  M  L  N  P  A  R  V  P  F  A  V  V  G  V  Y  K  E  D  L  :  V  H  K  M  A  K  A  L  Q  R  F  G  M  K  R  A  L  V  V  H  S  E  G  L  D  E  M  S  P  L   : G  P  G  L  V  L  D  V  T  P  D  N  I  E  K  F  S  F  D  P   : L  D  F  G  I  P  R  C  T  L  E  S  L  R  G  G  G  P  E  Y  N  A  E  M  L  R  R  V  L  S  G  E  K  G  S  I  A  D  A  F  :  A  L  N  A  S  A  A  L  L  V  S  G  R  V  D  N  L  A </second_frame>
            <third_frame>   S  V  T  L  *  A  N  L  F  P  H  I  Y  C  T  Q  K  S  L  L  Q  L  H  F  I  K  L  G  N  *  I  I  C  F  I  L  P  L  P  W  L  C  F  S  V  E  F  H  F  Q  R  Y  L  H  L  F  L  Q  E  L  N  L  Q  N  C  F  L  E  I  V  V  T  H  L  L  K  L  P  K  R  S  F  H  L  F  A  M  L  *  K  I  P  I  S  I  H  P  Y  P  H  L  V  S :   *  L  R  L  *  L  V  G  K  I  *  R  N  L  N  Q  K  I  L  L  I  S  C  W  M  V  L  M  K  L  *  L  V  L  F  L  F  F  *  E  L  K  E  K  P  L  K  K :   *  W  D  W  Q  G  Q  *  *  S  I  A  D  K  L  K  V  *  V  T  Q  L  I  L  L  G  Q  E  G  M  E  Q  T  R  *  I  S  Q  Q  V  P  Q  F  L  L  Q  L  V  V  Q  K  *  P  S :   K  G  I  D  P  V  H  P  L  V  G  A  Q  M  Y  W  K  N  *  V  L  P  L  S  W  T  L  R :   G  *  K  S  V  *  I  K  L  E  L  V  S  *  C  L  R  S  T  I  R  Q  *  R  S  S  D  L  S  E  K  S  *  K  *  R  R  C  S  T  S  W  D  L  C  *  T  Q  Q  E  C  R  L  L  *  *  E  F  T  K  K  T  W :   S  I  K  W  L  K  H  C  K  D  L  A  *  K  E  H  W  L  F  T  Q  K  A  *  M  R  *  V  L  L  :  A  L  D  *  S  L  T  S  H  Q  I  I  L  R  S  S  P  L  I  H  :  W  T  L  A  S  L  V  A  L  L  K  A  Y  E  V  E  V  Q  S  T  M  P  R  C  S  D  V  C  C  Q  E  K  K  G  Q  L  L  M  H  L :   H  *  M  H  Q  L  L  S  W  *  V  D  A  L  I  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79755" stop="79976"/>
                    <exon start="80098" stop="80241"/>
                    <exon start="80760" stop="80921"/>
                    <exon start="81013" stop="81096"/>
                    <exon start="81757" stop="81945"/>
                    <exon start="82146" stop="82236"/>
                    <exon start="82385" stop="82444"/>
                    <exon start="82694" stop="82812"/>
                    <exon start="82946" stop="82999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNHLFYSSSAMALFQCRIPFSAVSPSVSPRIEFTKLFLGNSSNPFVKTTQKKFSSLCYALKNSNKHSSISTFSELIEALISGKDLTESESEDSLDFLLDGADEALISAFLVLLRAKGETFEEVVGLARAMIKHCRQVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEELGVAIELDPEGVKECVNQAGIGFMMSPIYHPAMKIVRPIRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDLVHKMAKALQRFGMKRALVVHSEGLDEMSPLGPGLVLDVTPDNIEKFSFDPLDFGIPRCTLESLRGGGPEYNAEMLRRVLSGEKGSIADAFALNASAALLVSGRVDNLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="83249" PGL_stop="83589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83249" e_stop="83589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="83249" e_stop="83589" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83249" stop="83589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83249" stop="83572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAAATGCAAAGACATTAACA</gDNA_template>
            <first_frame> V  M  V  K  R  F  K  I  K  E  K  D  W  I  T  Q  L  N  L  Q  F  W  F  V  K  G  L  E  *  R  V  E  R  E  Q  K  I  N  V  N  F  G  L  *  N  L  Q  G  N  C  R  F  L  W  K  A  L  F  V  I  L  T  C  D  D  N  Q  A  K  Q  V  A  P  C  *  L  L  A  I  K  F  F  F  Y  H  F  *  N  D  Y  K  W  L  C  S  Y  V  L  F  F  V  *  I  S  L  P  T  K  M  Q  R  H  *   </first_frame>
            <second_frame>  *  W  L  K  D  S  K  S  K  K  K  T  G  *  H  N  S  T  C  N  F  G  L  *  K  D  *  N  K  G  L  K  E  N  K  K  *  M  *  T  L  A  C  E  I  C  K  A  T  V  D  F  C  G  K  H  C  L  *  Y  L  L  V  T  I  T  K  Q  S  K  W  L  L  V  S  C  W  P  L  N  F  F  F  I  I  S  E  M  T  I  N  G  F  V  V  M  Y  Y  F  L  Y  K  F  P  Y  Q  P  K  C  K  D  I  N  </second_frame>
            <third_frame>   N  G  *  K  I  Q  N  Q  R  K  R  L  D  N  T  T  Q  L  A  I  L  V  C  K  R  I  R  I  K  G  *  K  R  T  K  N  K  C  K  L  W  L  V  K  F  A  R  Q  L  *  I  S  V  E  S  I  V  C  N  T  Y  L  *  R  *  P  S  K  A  S  G  S  L  L  V  V  G  H  *  I  F  F  L  S  F  L  K  *  L  *  M  A  L  *  L  C  I  I  F  C  I  N  F  P  T  N  Q  N  A  K  T  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024A16.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="84079" PGL_stop="87238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84079" e_stop="84261"/>
            <exon e_start="85466" e_stop="85569"/>
            <exon e_start="85656" e_stop="85763"/>
            <exon e_start="85884" e_stop="86003"/>
            <exon e_start="86904" e_stop="87077"/>
            <exon e_start="87212" e_stop="87238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.331" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.350" acc_prob="0.492" e_score="0.994"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84079" e_stop="84261" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.331">
            <gDNA_intron_boundary i_start="84262" i_stop="85465" i_length="1204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85466" e_stop="85569" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.954">
            <gDNA_intron_boundary i_start="85570" i_stop="85655" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85656" e_stop="85763" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="85764" i_stop="85883" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85884" e_stop="86003" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86004" i_stop="86903" i_length="900"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="86904" e_stop="87077" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.350" acc_prob="0.492">
            <gDNA_intron_boundary i_start="87078" i_stop="87211" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.889">
            <gDNA_exon_boundary e_start="87212" e_stop="87238" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84079" stop="84261"/>
              <exon start="85466" stop="85569"/>
              <exon start="85656" stop="85710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84080" stop="84261"/>
              <exon start="85466" stop="85569"/>
              <exon start="85656" stop="85763"/>
              <exon start="85884" stop="86003"/>
              <exon start="86904" stop="87077"/>
              <exon start="87212" stop="87238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84080" stop="84261"/>
              <exon start="85466" stop="85569"/>
              <exon start="85656" stop="85668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT : GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA : GATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAG : TTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAG : ATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACAAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACAT : CTTGCAGATATCATAAATGTAGATTAT</gDNA_template>
            <first_frame> I  Q  A  S  C  L  Q  N  S  Y  L  L  S  D  R  N  H  K  V  L  R  K  F  K  S  W  E  C  W  F  N  F  L  S  E  E  L  *  L  L  G  L  N  G  S  S  L  K  S  L  V  N  K  I  P  M  R  M  Y  K  I  :  V  I  L  S  L  Q  W  S  L  T  R  M  V  I  I  W  L  L  E  I  K  L  D  V  S  *  F  L  S  G  M  L  V  K  K :   I  S  L  S  A  V  L  E  V  T  L  V  S  S  T  F  H  K  S  S  I  L  N  L  S  I  R  Q  N  S  R  V  M  N  L  S :   L  I  I  *  R  V  W  K  L  K  R  R  L  I  K  S  D  G  V  R  N  S  T  D  R  Y  F  F  L  Q  Q  T  T  G  R  *  N  F  G  R :   S  R  N  R  K  *  R  K  L  N  K  W  T  S  I  H  L  *  L  Q  R  I  L  F  *  L  I  E  V  T  *  V  D  K  V  N  H  L  M  L  M  V  T  V  *  N  G  L  T  K  *  T  A  H  H  H  H  I :   L  Q  I  S  *  M  *  I   </first_frame>
            <second_frame>  Y  K  L  L  V  S  K  I  H  I  F  *  V  I  E  I  I  K  F  *  E  S  S  N  L  G  S  V  G  L  I  S  *  V  R  S  Y  D  F  W  V  *  M  E  V  L  S  S  L  W  *  T  K  S  P  *  G  C  T  R  L :   *  Y  Y  L  C  N  G  V  *  Q  E  W  *  *  S  G  C  W  R  S  S  W  T  C  H  D  F  *  A  A  C  W  *  R   : R  S  L  *  V  Q  F  S  K  *  L  W  S  V  Q  P  S  T  K  A  A  S  *  I  *  V  *  D  R  I  P  E  S  *  I  *   : V  *  L  F  E  E  C  G  N  *  R  E  D  *  *  N  Q  M  V  Y  E  T  Q  Q  I  V  I  S  S  Y  S  K  R  Q  D  D  K  T  L  E   : D  Q  G  T  E  S  K  E  S  *  T  N  G  H  Q  F  I  C  D  F  R  E  F  S  F  S  *  *  K  L  H  E  W  T  K  *  I  I  S  C  *  W  L  Q  S  R  M  D  *  Q  N  E  R  H  I  I  I  T   : S  C  R  Y  H  K  C  R  L  </second_frame>
            <third_frame>   T  S  F  L  S  P  K  F  I  S  F  K  *  *  K  S  *  S  S  E  K  V  Q  I  L  G  V  L  V  *  F  L  E  *  G  V  M  T  F  G  S  E  W  K  F  S  Q  V  F  G  E  Q  N  P  H  E  D  V  Q  D   : C  D  I  I  S  A  M  E  F  D  K  N  G  D  N  L  A  V  G  D  Q  A  G  R  V  M  I  F  E  R  H  A  G  K  E  :  D  L  F  E  C  S  S  R  S  D  S  G  Q  F  N  L  P  Q  K  Q  H  P  E  F  E  Y  K  T  E  F  Q  S  H  E  S  E  :  F  D  Y  L  K  S  V  E  I  E  E  K  I  N  K  I  R  W  C  T  K  L  N  R  S  L  F  L  L  T  A  N  D  R  T  I  K  L  W  K  :  I  K  E  Q  K  V  K  K  V  K  Q  M  D  I  N  S  S  V  T  S  E  N  S  L  L  A  D  R  S  Y  M  S  G  Q  S  E  S  S  H  V  N  G  Y  S  L  E  W  T  N  K  M  N  G  T  S  S  S  H  :  L  A  D  I  I  N  V  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84183" stop="84261"/>
                    <exon start="85466" stop="85569"/>
                    <exon start="85656" stop="85763"/>
                    <exon start="85884" stop="86003"/>
                    <exon start="86904" stop="87077"/>
                    <exon start="87212" stop="87238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVMTFGSEWKFSQVFGEQNPHEDVQDCDIISAMEFDKNGDNLAVGDQAGRVMIFERHAGKEDLFECSSRSDSGQFNLPQKQHPEFEYKTEFQSHESEFDYLKSVEIEEKINKIRWCTKLNRSLFLLTANDRTIKLWKIKEQKVKKVKQMDINSSVTSENSLLADRSYMSGQSESSHVNGYSLEWTNKMNGTSSSHLADIINVDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="87259" PGL_stop="90713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87259" e_stop="87303"/>
            <exon e_start="87509" e_stop="87627"/>
            <exon e_start="88537" e_stop="88660"/>
            <exon e_start="88789" e_stop="88912"/>
            <exon e_start="89460" e_stop="89528"/>
            <exon e_start="89676" e_stop="89767"/>
            <exon e_start="89901" e_stop="89978"/>
            <exon e_start="90060" e_stop="90136"/>
            <exon e_start="90259" e_stop="90713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87259" e_stop="87303" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87304" i_stop="87508" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87509" e_stop="87627" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.849">
            <gDNA_intron_boundary i_start="87628" i_stop="88536" i_length="909"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88537" e_stop="88660" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.645">
            <gDNA_intron_boundary i_start="88661" i_stop="88788" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88789" e_stop="88912" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.981">
            <gDNA_intron_boundary i_start="88913" i_stop="89459" i_length="547"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89460" e_stop="89528" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="89529" i_stop="89675" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89676" e_stop="89767" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.978">
            <gDNA_intron_boundary i_start="89768" i_stop="89900" i_length="133"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89901" e_stop="89978" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="89979" i_stop="90059" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90060" e_stop="90136" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="90259" e_stop="90713" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87259" stop="87303"/>
              <exon start="87509" stop="87627"/>
              <exon start="88537" stop="88660"/>
              <exon start="88789" stop="88912"/>
              <exon start="89460" stop="89495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87541" stop="87627"/>
              <exon start="88537" stop="88660"/>
              <exon start="88789" stop="88912"/>
              <exon start="89460" stop="89528"/>
              <exon start="89676" stop="89767"/>
              <exon start="89901" stop="89971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87579" stop="87627"/>
              <exon start="88537" stop="88660"/>
              <exon start="88789" stop="88912"/>
              <exon start="89460" stop="89473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89484" stop="89528"/>
              <exon start="89676" stop="89767"/>
              <exon start="89901" stop="89978"/>
              <exon start="90060" stop="90136"/>
              <exon start="90259" stop="90645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90133" stop="90136"/>
              <exon start="90259" stop="90713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAG : CGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG : AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT : ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG : CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG : CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG : CAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG : AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG : GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</gDNA_template>
            <first_frame> C  K  C  S  *  F  Q  H  Q  F  H  L  K  Q  *  :  R  W  *  D  I  P  L  W  G  *  P  *  D  K  R  M  E  P  *  G  *  R  S  V  F  Q  Y  H  *  Y  E  A  K  R  Y  G  R  S  Y  R :   G  D  Y  I  S  R  I  P  S  I  S  L  Q  F  V  G  L  *  *  F  A  G  I  H  T  S  C  *  H  E  D  V  C  N  M  *  S  Q  C  E  N  :  T  S  R  W  K  E  P  W  L  *  N  I  F  Q  *  D  H  C  F  Y  I  *  H  E  V  C  N  G  W  K  A  Y  F  K  S  G  L  H  D  S  E   : A  M  G  H  S  H  G  V  F  P  G  C  N  I  *  D  S  *  T  P  P  S  *   : A  S  *  V  V  Y  R  *  C  H  L  R  *  V  R  L  L  P  E  W  K  R  T  S  I  C  N  W  I  L  Q  :  Q  S  S  S  C  I  F  I  W  N  W  E  *  K  W  H  H  T  G  S  Q  K  R  I  K  *  :  K  T  N  L  S  N  Y  F  K  A  S  K  V  I  I  E  Q  L  G  T  R  I  L  S  P  R :   T  R  S  *  L  R  K  *  D  I  L  *  P  E  V  Q  V  A  A  C  G  L  A  S  N  A  Q  S  D  R  L  L  Q  W  K  Q  L  V  H  V  P  C  L  K  C  Y  E  E  D  S  *  S  *  A  S  C  K  K  N  H  I  V  P  V  N  I  P  R  L  *  D  W  L  V  *  S  H  R  *  Q  S  A  I  G  I  F  L  K  K  I  N  D  S  F  L  K  N  G  I  A  F  T  R  *  H  T  Q  K  F  D  T  C  K  L  H  K  Y  I  L  C  T  S  E  E  V  K  V  A  N  I  F  G  *  Y  C  C  I  V  T  L  L  F  I  S  Y  F  S  L  N  V  M  </first_frame>
            <second_frame>  A  N  A  H  D  F  N  I  N  S  I  S  N  N  S :   D  G  E  T  F  L  S  G  D  D  L  R  I  N  V  W  N  L  E  V  R  D  Q  C  F  N  I  I  D  M  K  P  K  D  M  E  D  L  T   : E  V  I  T  S  A  E  F  H  P  F  H  C  N  L  L  A  Y  S  S  S  R  G  F  I  R  L  V  D  M  R  M  S  A  I  C  D  H  N  V  K  I :   L  Q  D  G  R  S  H  G  S  K  T  F  F  S  E  I  I  A  S  I  S  D  M  K  Y  A  M  D  G  R  H  I  L  S  R  D  Y  M  T  L  K  :  L  W  D  T  H  M  E  S  S  P  V  A  T  Y  K  I  H  E  H  L  R  P  K  :  L  P  K  L  Y  T  D  D  A  I  F  D  K  F  D  C  C  L  N  G  N  E  L  Q  F  A  T  G  S  Y  S :   N  H  L  R  V  F  S  F  G  T  G  N  E  N  G  I  T  L  E  V  K  K  E  S  N  R :   K  P  T  S  Q  T  T  S  R  P  R  R  S  S  L  S  N  L  A  R  G  F  Y  R  Q   : G  Q  D  H  D  S  E  N  E  I  S  C  N  L  K  S  K  L  L  H  V  A  W  H  P  T  H  N  L  I  A  C  S  S  G  S  S  L  F  M  Y  H  A  *  S  A  M  K  R  T  H  S  H  K  L  P  V  K  K  I  I  L  S  L  S  I  Y  R  V  C  E  I  G  W  S  N  L  T  V  N  S  L  P  *  E  Y  F  *  K  K  L  T  I  P  F  *  K  M  V  L  L  L  Q  D  S  I  H  R  S  L  I  L  A  S  C  T  N  T  F  C  A  H  L  K  K  *  R  W  Q  T  F  L  V  D  T  V  A  L  L  L  Y  Y  S  F  L  T  F  L  *  M  *  W </second_frame>
            <third_frame>   Q  M  L  M  I  S  T  S  I  P  S  Q  T  I   : A  M  V  R  H  S  S  L  G  M  T  L  G  *  T  Y  G  T  L  R  L  E  I  S  V  S  I  S  L  I  *  S  Q  K  I  W  K  I  L  Q  :  R  *  L  H  Q  Q  N  S  I  H  F  T  A  I  C  W  L  I  V  V  R  G  D  S  Y  V  L  L  T  *  G  C  L  Q  Y  V  I  T  M  *  K   : Y  F  K  M  E  G  A  M  A  L  K  H  F  S  V  R  S  L  L  L  Y  L  T  *  S  M  Q  W  M  E  G  I  F  *  V  G  I  T  *  L  *  S :   Y  G  T  L  T  W  S  L  P  R  L  Q  H  I  R  F  M  N  T  S  V  L  S :   F  L  S  C  I  Q  M  M  P  S  S  I  S  S  I  A  A  *  M  E  T  N  F  N  L  Q  L  D  L  T   : A  I  I  F  V  Y  F  H  L  E  L  G  M  K  M  A  S  H  W  K  S  K  K  N  Q  I   : E  N  Q  P  L  K  L  L  Q  G  L  E  G  H  H  *  A  T  W  H  E  D  F  I  A  K  :  D  K  I  M  T  Q  K  M  R  Y  P  V  T  *  S  P  S  C  C  M  W  L  G  I  Q  R  T  I  *  S  L  A  P  V  E  A  A  C  S  C  T  M  L  K  V  L  *  R  G  L  I  V  I  S  F  L  *  K  K  S  Y  C  P  C  Q  Y  T  A  F  V  R  L  A  G  L  I  S  P  L  T  V  C  H  R  N  I  F  E  K  N  *  R  F  L  F  K  K  W  Y  C  F  Y  K  I  A  Y  T  E  V  *  Y  L  Q  V  A  Q  I  H  F  V  H  I  *  R  S  K  G  G  K  H  F  W  L  I  L  L  H  C  Y  F  I  I  H  F  L  L  F  S  E  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87260" stop="87303"/>
                    <exon start="87509" stop="87627"/>
                    <exon start="88537" stop="88660"/>
                    <exon start="88789" stop="88912"/>
                    <exon start="89460" stop="89528"/>
                    <exon start="89676" stop="89767"/>
                    <exon start="89901" stop="89978"/>
                    <exon start="90060" stop="90136"/>
                    <exon start="90259" stop="90389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANAHDFNINSISNNSDGETFLSGDDLRINVWNLEVRDQCFNIIDMKPKDMEDLTEVITSAEFHPFHCNLLAYSSSRGFIRLVDMRMSAICDHNVKILQDGRSHGSKTFFSEIIASISDMKYAMDGRHILSRDYMTLKLWDTHMESSPVATYKIHEHLRPKLPKLYTDDAIFDKFDCCLNGNELQFATGSYSNHLRVFSFGTGNENGITLEVKKESNRKPTSQTTSRPRRSSLSNLARGFYRQGQDHDSENEISCNLKSKLLHVAWHPTHNLIACSSGSSLFMYHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89727" e_stop="89978"/>
            <exon e_start="90060" e_stop="90136"/>
            <exon e_start="90259" e_stop="90713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.996"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="89727" e_stop="89978" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="89979" i_stop="90059" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90060" e_stop="90136" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="90259" e_stop="90713" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89727" stop="89978"/>
              <exon start="90060" stop="90136"/>
              <exon start="90259" stop="90583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90133" stop="90136"/>
              <exon start="90259" stop="90713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG : AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG : GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</gDNA_template>
            <first_frame> L  N  G  N  E  L  Q  F  A  T  G  S  Y  R  F  I  L  Q  R  K  F  *  P  L  H  M  N  S  S  I  S  C  C  V  I  M  Y  F  H  F  V  D  I  L  Y  M  *  *  N  F  Y  G  N  L  L  L  I  *  Q  S  S  S  C  I  F  I  W  N  W  E  *  K  W  H  H  T  G  S  Q  K  R  I  K  *  :  K  T  N  L  S  N  Y  F  K  A  S  K  V  I  I  E  Q  L  G  T  R  I  L  S  P  R :   T  R  S  *  L  R  K  *  D  I  L  *  P  E  V  Q  V  A  A  C  G  L  A  S  N  A  Q  S  D  R  L  L  Q  W  K  Q  L  V  H  V  P  C  L  K  C  Y  E  E  D  S  *  S  *  A  S  C  K  K  N  H  I  V  P  V  N  I  P  R  L  *  D  W  L  V  *  S  H  R  *  Q  S  A  I  G  I  F  L  K  K  I  N  D  S  F  L  K  N  G  I  A  F  T  R  *  H  T  Q  K  F  D  T  C  K  L  H  K  Y  I  L  C  T  S  E  E  V  K  V  A  N  I  F  G  *  Y  C  C  I  V  T  L  L  F  I  S  Y  F  S  L  N  V  M  </first_frame>
            <second_frame>  *  M  E  T  N  F  N  L  Q  L  D  L  T  G  L  S  F  K  E  S  F  N  P  Y  I  *  I  V  L  S  V  V  V  *  L  C  T  S  I  L  L  I  F  C  T  C  D  E  I  F  M  V  I  F  C  *  F  S  N  H  L  R  V  F  S  F  G  T  G  N  E  N  G  I  T  L  E  V  K  K  E  S  N  R :   K  P  T  S  Q  T  T  S  R  P  R  R  S  S  L  S  N  L  A  R  G  F  Y  R  Q   : G  Q  D  H  D  S  E  N  E  I  S  C  N  L  K  S  K  L  L  H  V  A  W  H  P  T  H  N  L  I  A  C  S  S  G  S  S  L  F  M  Y  H  A  *  S  A  M  K  R  T  H  S  H  K  L  P  V  K  K  I  I  L  S  L  S  I  Y  R  V  C  E  I  G  W  S  N  L  T  V  N  S  L  P  *  E  Y  F  *  K  K  L  T  I  P  F  *  K  M  V  L  L  L  Q  D  S  I  H  R  S  L  I  L  A  S  C  T  N  T  F  C  A  H  L  K  K  *  R  W  Q  T  F  L  V  D  T  V  A  L  L  L  Y  Y  S  F  L  T  F  L  *  M  *  W </second_frame>
            <third_frame>   E  W  K  R  T  S  I  C  N  W  I  L  Q  V  Y  P  S  K  K  V  L  T  P  T  Y  E  *  F  Y  Q  L  L  C  N  Y  V  L  P  F  C  *  Y  S  V  H  V  M  K  F  L  W  *  S  F  V  D  L  A  I  I  F  V  Y  F  H  L  E  L  G  M  K  M  A  S  H  W  K  S  K  K  N  Q  I   : E  N  Q  P  L  K  L  L  Q  G  L  E  G  H  H  *  A  T  W  H  E  D  F  I  A  K  :  D  K  I  M  T  Q  K  M  R  Y  P  V  T  *  S  P  S  C  C  M  W  L  G  I  Q  R  T  I  *  S  L  A  P  V  E  A  A  C  S  C  T  M  L  K  V  L  *  R  G  L  I  V  I  S  F  L  *  K  K  S  Y  C  P  C  Q  Y  T  A  F  V  R  L  A  G  L  I  S  P  L  T  V  C  H  R  N  I  F  E  K  N  *  R  F  L  F  K  K  W  Y  C  F  Y  K  I  A  Y  T  E  V  *  Y  L  Q  V  A  Q  I  H  F  V  H  I  *  R  S  K  G  G  K  H  F  W  L  I  L  L  H  C  Y  F  I  I  H  F  L  L  F  S  E  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89896" stop="89978"/>
                    <exon start="90060" stop="90136"/>
                    <exon start="90259" stop="90389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNHLRVFSFGTGNENGITLEVKKESNRKPTSQTTSRPRRSSLSNLARGFYRQGQDHDSENEISCNLKSKLLHVAWHPTHNLIACSSGSSLFMYHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="91972" PGL_stop="93106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91972" e_stop="92029"/>
            <exon e_start="92146" e_stop="92363"/>
            <exon e_start="92665" e_stop="93106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.165" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91972" e_stop="92029" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92030" i_stop="92145" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92146" e_stop="92363" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.165" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92364" i_stop="92664" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="92665" e_stop="93106" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91972" stop="92029"/>
              <exon start="92146" stop="92363"/>
              <exon start="92665" stop="93106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91972" stop="92029"/>
              <exon start="92146" stop="92363"/>
              <exon start="92665" stop="92854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG : GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG : GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCGTTGTCAAGTGTCGCACAGG</gDNA_template>
            <first_frame> E  S  T  K  D  E  I  K  Y  R  G  I  R  A  M  P  F  V  I   : G  N  E  T  F  E  K  L  G  T  I  G  S  S  S  N  L  L  V  Y  L  T  S  I  F  H  L  K  S  I  T  A  T  N  I  V  N  I  F  N  G  T  C  N  F  G  T  L  L  G  A  F  L  S  D  T  Y  F  G  R  Y  N  I  L  G  F  A  S  V  C  S  F  L  :  G  M  L  V  L  T  L  T  A  A  V  S  K  F  H  P  P  E  C  G  N  Q  E  T  A  P  V  C  V  G  P  T  A  G  Q  M  T  F  L  L  G  G  F  G  L  L  V  I  G  A  S  G  I  R  P  C  S  L  A  F  G  A  D  Q  F  D  P  N  T  E  S  G  R  R  G  V  M  S  F  F  N  W  Y  Y  F  T  R  T  F  A  V  M  V  S  L  T  V  I  V  Y  V  Q  S  N  I  S  W  S  L  G  L  A  I  P  T  I  T  M  F  L  S  C  A  L  F  F  V  G  T  K  I  Y  V  R  F  V  P  K  G  S  P  L  S  S  V  A  Q  </first_frame>
            <second_frame>  N  Q  L  K  M  K  S  S  T  E  E  S  E  Q  C  P  L  S  *  :  G  M  R  H  L  R  S  *  E  Q  L  E  A  R  R  I  C  W  F  I  *  Q  V  Y  F  I  *  R  A  *  Q  L  L  I  L  S  I  S  S  M  V  L  A  T  L  E  P  C  L  E  L  F  F  L  I  R  T  L  V  V  T  T  F  L  D  L  P  Q  S  V  P  S  W :   G  C  *  Y  *  L  *  Q  Q  Q  S  Q  S  F  I  H  L  N  V  V  I  K  K  L  H  Q  Y  V  L  V  Q  Q  Q  D  K  *  H  F  Y  *  E  V  L  D  C  W  *  L  V  L  L  A  *  G  L  V  V  *  H  L  G  L  I  N  L  I  P  I  L  N  L  E  E  E  E  L  *  V  S  S  T  G  T  I  S  L  A  R  L  L  *  W  S  H  *  L  S  L  C  M  F  N  Q  I  S  A  G  L  *  D  *  P  S  Q  Q  L  L  C  S  F  L  V  H  F  S  S  W  A  L  K  Y  M  S  G  L  C  Q  K  A  A  R  C  Q  V  S  H  R </second_frame>
            <third_frame>   I  N  *  R  *  N  Q  V  Q  R  N  Q  S  N  A  L  C  H  R :   E  *  D  I  *  E  A  R  N  N  W  K  L  V  E  S  V  G  L  F  N  K  Y  I  S  F  E  E  H  N  S  Y  *  Y  C  Q  Y  L  Q  W  Y  L  Q  L  W  N  L  A  W  S  F  S  F  *  Y  V  L  W  S  L  Q  H  S  W  I  C  L  S  L  F  L  L   : G  D  V  S  T  D  F  N  S  S  S  L  K  V  S  S  T  *  M  W  *  S  R  N  C  T  S  M  C  W  S  N  S  R  T  N  D  I  F  T  R  R  F  W  I  A  G  N  W  C  F  W  H  K  A  L  *  F  S  I  W  G  *  S  I  *  S  Q  Y  *  I  W  K  K  R  S  Y  E  F  L  Q  L  V  L  F  H  S  H  V  C  C  D  G  L  I  D  C  H  C  V  C  S  I  K  Y  Q  L  V  S  R  I  S  H  P  N  N  Y  Y  V  P  F  L  C  T  F  L  R  G  H  *  N  I  C  Q  V  C  A  K  R  Q  P  V  V  K  C  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91972" stop="92029"/>
                    <exon start="92146" stop="92363"/>
                    <exon start="92665" stop="93105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESTKDEIKYRGIRAMPFVIGNETFEKLGTIGSSSNLLVYLTSIFHLKSITATNIVNIFNGTCNFGTLLGAFLSDTYFGRYNILGFASVCSFLGMLVLTLTAAVSKFHPPECGNQETAPVCVGPTAGQMTFLLGGFGLLVIGASGIRPCSLAFGADQFDPNTESGRRGVMSFFNWYYFTRTFAVMVSLTVIVYVQSNISWSLGLAIPTITMFLSCALFFVGTKIYVRFVPKGSPLSSVAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="93925" PGL_stop="95665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93925" e_stop="94007"/>
            <exon e_start="94237" e_stop="94768"/>
            <exon e_start="95483" e_stop="95506"/>
            <exon e_start="95645" e_stop="95665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-intron don_prob="0.000" acc_prob="0.675" e_score="0.750"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="93925" e_stop="94007" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="94008" i_stop="94236" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="94237" e_stop="94768" e_length="532"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94769" i_stop="95482" i_length="714"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="95483" e_stop="95506" e_length="24"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="95507" i_stop="95644" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="95645" e_stop="95665" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93925" stop="94007"/>
              <exon start="94237" stop="94768"/>
              <exon start="95483" stop="95506"/>
              <exon start="95645" stop="95665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTCATCCATGTCAGGACTATGGCTAATACCTCAGATGGCATTAGCAG : GTCTTTCTGAGGCATTTACACTAATCAGCGAGAACGAGTTCTTCTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTCTTCTTTGTTGGAATGGCGGGGTCGAGTTATTTGAGCAGTTTCTTGACATCAGTTGTTCATAAGACATCAAGTTGGTTGGCTGAGGACCTTAACAAGGGGAAATTAGACTCTTTTTATTACCTCATTGCAGGACTAGAAATTCTGAATTTGGGTTATTTTCTTGTGTGTGCAAAATGGTACAAGTATAAAGGAAGGGCAGGTGACAACAAAGTGAGTGAAAGAACAGATCAAAATGAAATTGTAATCTAATTTTTCAGTCAGCAGAATCAGTATGGTAGTTTTTCCATGATTAGTAATGCTTTGTTGGAACCAAATATAGAAAGTAAAACAAGAAAAATGAAAATTATGTGTCACTCTCATCCTTCATGAGCTAATGCACAAATCAAATCAATTGTGTCGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTAAATT : TTTATAAAAATAACATAAAAGATA : TAAAAACTAAAATGAAGAAAA</gDNA_template>
            <first_frame> A  N  A  A  N  D  S  G  E  R  C  N  F  I  H  V  R  T  M  A  N  T  S  D  G  I  S  R :   S  F  *  G  I  Y  T  N  Q  R  E  R  V  L  L  *  T  M  P  *  K  H  E  E  H  R  G  I  F  L  L  C  W  N  G  G  V  E  L  F  E  Q  F  L  D  I  S  C  S  *  D  I  K  L  V  G  *  G  P  *  Q  G  E  I  R  L  F  L  L  P  H  C  R  T  R  N  S  E  F  G  L  F  S  C  V  C  K  M  V  Q  V  *  R  K  G  R  *  Q  Q  S  E  *  K  N  R  S  K  *  N  C  N  L  I  F  Q  S  A  E  S  V  W  *  F  F  H  D  *  *  C  F  V  G  T  K  Y  R  K  *  N  K  K  N  E  N  Y  V  S  L  S  S  F  M  S  *  C  T  N  Q  I  N  C  V  A  H  I  N  R  V  F  M  V  N  K  V  F  *  I  :  F  I  K  I  T  *  K  I  :  *  K  L  K  *  R  K </first_frame>
            <second_frame>  P  M  L  Q  M  T  Q  G  K  G  A  I  S  S  M  S  G  L  W  L  I  P  Q  M  A  L  A   : G  L  S  E  A  F  T  L  I  S  E  N  E  F  F  Y  K  Q  C  P  E  N  M  R  S  I  A  A  S  F  F  F  V  G  M  A  G  S  S  Y  L  S  S  F  L  T  S  V  V  H  K  T  S  S  W  L  A  E  D  L  N  K  G  K  L  D  S  F  Y  Y  L  I  A  G  L  E  I  L  N  L  G  Y  F  L  V  C  A  K  W  Y  K  Y  K  G  R  A  G  D  N  K  V  S  E  R  T  D  Q  N  E  I  V  I  *  F  F  S  Q  Q  N  Q  Y  G  S  F  S  M  I  S  N  A  L  L  E  P  N  I  E  S  K  T  R  K  M  K  I  M  C  H  S  H  P  S  *  A  N  A  Q  I  K  S  I  V  S  P  I  S  I  E  Y  L  W  S  T  K  F  F  K  F :   L  *  K  *  H  K  R  Y :   K  N  *  N  E  E   </second_frame>
            <third_frame>   Q  C  C  K  *  L  R  G  K  V  Q  F  H  P  C  Q  D  Y  G  *  Y  L  R  W  H  *  Q  :  V  F  L  R  H  L  H  *  S  A  R  T  S  S  S  I  N  N  A  L  K  T  *  G  A  S  R  H  L  S  S  L  L  E  W  R  G  R  V  I  *  A  V  S  *  H  Q  L  F  I  R  H  Q  V  G  W  L  R  T  L  T  R  G  N  *  T  L  F  I  T  S  L  Q  D  *  K  F  *  I  W  V  I  F  L  C  V  Q  N  G  T  S  I  K  E  G  Q  V  T  T  K  *  V  K  E  Q  I  K  M  K  L  *  S  N  F  S  V  S  R  I  S  M  V  V  F  P  *  L  V  M  L  C  W  N  Q  I  *  K  V  K  Q  E  K  *  K  L  C  V  T  L  I  L  H  E  L  M  H  K  S  N  Q  L  C  R  P  Y  Q  S  S  I  Y  G  Q  Q  S  F  L  N   : F  Y  K  N  N  I  K  D   : I  K  T  K  M  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93926" stop="94007"/>
                    <exon start="94237" stop="94574"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMLQMTQGKGAISSMSGLWLIPQMALAGLSEAFTLISENEFFYKQCPENMRSIAASFFFVGMAGSSYLSSFLTSVVHKTSSWLAEDLNKGKLDSFYYLIAGLEILNLGYFLVCAKWYKYKGRAGDNKVSERTDQNEIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="102356" PGL_stop="107773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102356" e_stop="102422"/>
            <exon e_start="104589" e_stop="104667"/>
            <exon e_start="105826" e_stop="105954"/>
            <exon e_start="107366" e_stop="107464"/>
            <exon e_start="107557" e_stop="107655"/>
            <exon e_start="107745" e_stop="107773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.945" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102356" e_stop="102422" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.950">
            <gDNA_intron_boundary i_start="102423" i_stop="104588" i_length="2166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104589" e_stop="104667" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.946">
            <gDNA_intron_boundary i_start="104668" i_stop="105825" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105826" e_stop="105954" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.951">
            <gDNA_intron_boundary i_start="105955" i_stop="107365" i_length="1411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107366" e_stop="107464" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.811">
            <gDNA_intron_boundary i_start="107465" i_stop="107556" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="107557" e_stop="107655" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.698" acc_prob="0.945">
            <gDNA_intron_boundary i_start="107656" i_stop="107744" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107745" e_stop="107773" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102356" stop="102422"/>
              <exon start="104589" stop="104667"/>
              <exon start="105826" stop="105954"/>
              <exon start="107366" stop="107464"/>
              <exon start="107557" stop="107647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102364" stop="102422"/>
              <exon start="104589" stop="104667"/>
              <exon start="105826" stop="105954"/>
              <exon start="107366" stop="107464"/>
              <exon start="107557" stop="107655"/>
              <exon start="107745" stop="107773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAG : GAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATG : ATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA : TTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG : GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGA : GCATATTTATCTATCTTGTACTTGCGAAT</gDNA_template>
            <first_frame> V  L  R  Q  V  R  *  D  L  G  L  T  L  L  S  S  A  A  V  *  R  T   : G  N  *  R  R  V  S  V  F  S  L  L  H  F  *  H  E  Q  A  L  T  E  *  W  Y  L  * :   L  N  M  S  S  C  Q  Q  L  A  N  G  L  Q  S  A  V  N  S  I  L  *  T  I  S  H  C  C  C  S  G  L  P  F  Q  L  R  K  S  F  L  S  N :   L  I  A  S  V  I  M  A  R  R  S  *  S  T  I  C  G  *  M  M  K  E  K  W  S  S  T  F  T  Q  T  L  R :   I  F  V  S  L  V  M  Q  K  V  V  K  V  V  P  V  C  Q  *  V  T  C  I  L  P  T  L  F  D  I  H  S  E :   H  I  Y  L  S  C  T  C  E  </first_frame>
            <second_frame>  F  *  D  K  F  D  E  T  W  G  *  R  C  C  L  Q  P  L  Y  E  E  Q  :  E  I  D  A  E  C  R  S  S  L  F  Y  I  F  D  T  S  R  P  *  Q  N  S  G  T  Y   : D  *  I  *  V  H  V  S  N  *  Q  M  D  F  N  L  Q  *  T  A  F  C  E  Q  S  P  I  V  V  A  V  V  S  L  F  N  *  G  R  A  S  *  A   : I  *  *  H  R  *  S  W  H  E  D  H  N  L  Q  F  V  V  K  *  *  R  R  N  G  A  R  L  L  L  R  P  *   : G  Y  S  Y  L  L  *  C  R  K  W  *  K  L  F  P  Y  V  S  K  *  P  A  S  C  Q  H  S  S  I  F  T  P   : S  I  F  I  Y  L  V  L  A  N </second_frame>
            <third_frame>   F  K  T  S  S  M  R  L  G  A  D  V  V  V  F  S  R  C  M  K  N  R :   K  L  T  Q  S  V  G  L  L  S  F  T  F  L  T  R  A  G  L  D  R  I  V  V  P  M  :  I  E  Y  E  F  M  S  A  T  S  K  W  T  S  I  C  S  E  Q  H  F  V  N  N  L  P  L  L  L  Q  W  S  P  F  S  T  E  E  E  L  L  K  Q  :  F  D  S  I  G  D  H  G  T  K  I  I  I  Y  N  L  W  L  N  D  E  G  E  M  E  L  D  F  Y  S  D  P  E  :  D  I  R  I  S  C  D  A  E  S  G  K  S  C  S  R  M  S  V  S  D  L  H  L  A  N  T  L  R  Y  S  L  R  :  A  Y  L  S  I  L  Y  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102358" stop="102422"/>
                    <exon start="104589" stop="104667"/>
                    <exon start="105826" stop="105954"/>
                    <exon start="107366" stop="107464"/>
                    <exon start="107557" stop="107655"/>
                    <exon start="107745" stop="107771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKTSSMRLGADVVVFSRCMKNRKLTQSVGLLSFTFLTRAGLDRIVVPMIEYEFMSATSKWTSICSEQHFVNNLPLLLQWSPFSTEEELLKQFDSIGDHGTKIIIYNLWLNDEGEMELDFYSDPEDIRISCDAESGKSCSRMSVSDLHLANTLRYSLRAYLSILYLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="109307" PGL_stop="112247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109307" e_stop="109391"/>
            <exon e_start="109686" e_stop="109774"/>
            <exon e_start="110231" e_stop="110337"/>
            <exon e_start="110495" e_stop="110574"/>
            <exon e_start="111553" e_stop="111595"/>
            <exon e_start="111764" e_stop="111948"/>
            <exon e_start="112215" e_stop="112247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.347" e_score="1.000"/>
          <exon-only e_score="0.485"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109307" e_stop="109391" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109686" e_stop="109774" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110231" e_stop="110337" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110495" e_stop="110574" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111553" e_stop="111595" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111764" e_stop="111948" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.347">
            <gDNA_intron_boundary i_start="111949" i_stop="112214" i_length="266"/>
          </intron>
          <exon e_serial="7" e_score="0.485">
            <gDNA_exon_boundary e_start="112215" e_stop="112247" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109307" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111595"/>
              <exon start="111764" stop="111948"/>
              <exon start="112215" stop="112247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109308" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGC : AGAAGAAAAGTAAAGCAAAATTAGTGATCTTGG</gDNA_template>
            <first_frame> Q  L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W   : Q  K  K  S  K  A  K  L  V  I  L  </first_frame>
            <second_frame>  N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  :  R  R  K  V  K  Q  N  *  *  S  W </second_frame>
            <third_frame>   T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A :   E  E  K  *  S  K  I  S  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109309" stop="109391"/>
                    <exon start="109686" stop="109774"/>
                    <exon start="110231" stop="110337"/>
                    <exon start="110495" stop="110574"/>
                    <exon start="111553" stop="111595"/>
                    <exon start="111764" stop="111877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109308" e_stop="109391"/>
            <exon e_start="109686" e_stop="109774"/>
            <exon e_start="110231" e_stop="110337"/>
            <exon e_start="110495" e_stop="110574"/>
            <exon e_start="111553" e_stop="111595"/>
            <exon e_start="111764" e_stop="112100"/>
            <exon e_start="112215" e_stop="112222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.347" e_score="0.991"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109308" e_stop="109391" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109686" e_stop="109774" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110231" e_stop="110337" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110495" e_stop="110574" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111553" e_stop="111595" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="111764" e_stop="112100" e_length="337"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.347">
            <gDNA_intron_boundary i_start="112101" i_stop="112214" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.875">
            <gDNA_exon_boundary e_start="112215" e_stop="112222" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109308" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109371" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111595"/>
              <exon start="111764" stop="112100"/>
              <exon start="112215" stop="112222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGA : AGAAGAAA</gDNA_template>
            <first_frame> N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  M  C  L  L  E  W  R  A  N  D  L  S  H  V  A  C  P  F  S  T  S  A  G  G  S  Y  F  R  F  C  H  N  V  L  R  T  M  L  S  W  R  N  S  K  V  V  V  M  *  L  E :   E  E  </first_frame>
            <second_frame>  T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A  C  A  C  *  N  G  G  L  M  I  S  P  M  L  P  A  L  F  Q  L  L  P  E  E  V  I  S  V  F  V  I  M  C  L  G  Q  C  C  L  G  A  I  V  K  L  *  L  C  D  *   : K  K  K </second_frame>
            <third_frame>   L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W  H  V  L  V  R  M  E  G  *  *  S  L  P  C  C  L  P  F  F  N  F  C  R  R  K  L  F  P  F  L  S  *  C  A  *  D  N  V  V  L  A  Q  *  *  S  C  S  Y  V  T  R  :  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109309" stop="109391"/>
                    <exon start="109686" stop="109774"/>
                    <exon start="110231" stop="110337"/>
                    <exon start="110495" stop="110574"/>
                    <exon start="111553" stop="111595"/>
                    <exon start="111764" stop="111877"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109307" e_stop="109391"/>
            <exon e_start="109686" e_stop="109774"/>
            <exon e_start="110231" e_stop="110337"/>
            <exon e_start="110495" e_stop="110574"/>
            <exon e_start="111553" e_stop="111595"/>
            <exon e_start="111764" e_stop="111950"/>
            <exon e_start="112215" e_stop="112222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.347" e_score="0.995"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109307" e_stop="109391" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109686" e_stop="109774" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110231" e_stop="110337" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110495" e_stop="110574" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111553" e_stop="111595" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="111764" e_stop="111950" e_length="187"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.347">
            <gDNA_intron_boundary i_start="111951" i_stop="112214" i_length="264"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="112215" e_stop="112222" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109307" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111595"/>
              <exon start="111764" stop="111950"/>
              <exon start="112215" stop="112222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109308" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCAT : AGAAGAAA</gDNA_template>
            <first_frame> Q  L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W  H  :  R  R   </first_frame>
            <second_frame>  N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  I :   E  E  </second_frame>
            <third_frame>   T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A   : *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109309" stop="109391"/>
                    <exon start="109686" stop="109774"/>
                    <exon start="110231" stop="110337"/>
                    <exon start="110495" stop="110574"/>
                    <exon start="111553" stop="111595"/>
                    <exon start="111764" stop="111877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="122372" PGL_stop="123342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122372" e_stop="122575"/>
            <exon e_start="122683" e_stop="122769"/>
            <exon e_start="122934" e_stop="123140"/>
            <exon e_start="123230" e_stop="123342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.936"/>
          <exon-intron don_prob="0.915" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="122372" e_stop="122575" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122576" i_stop="122682" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122683" e_stop="122769" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.915" acc_prob="0.985">
            <gDNA_intron_boundary i_start="122770" i_stop="122933" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="122934" e_stop="123140" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="123141" i_stop="123229" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123230" e_stop="123342" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122372" stop="122575"/>
              <exon start="122683" stop="122769"/>
              <exon start="122934" stop="123140"/>
              <exon start="123230" stop="123342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGTAGTAATTCTAAGTCATTTTCAATCATTTTTTCATTTGTTGGTTTCTTGTTTCTTGCTTCTACATTTGCTACTGTCATCTCAGATCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAAGGACTTATCTCAAGAACATCAATAAGCCAGCAGTTAAGACAATTCAG : AGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTG : GAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGGAAAAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAG : CATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</gDNA_template>
            <first_frame> S  S  S  N  S  K  S  F  S  I  I  F  S  F  V  G  F  L  F  L  A  S  T  F  A  T  V  I  S  D  P  T  V  Q  H  S  N  Q  T  F  K  P  K  Q  E  L  I  K  L  K  R  L  R  T  Y  L  K  N  I  N  K  P  A  V  K  T  I  Q  :  S  S  D  G  D  L  I  D  C  V  L  S  H  L  Q  P  A  F  D  H  P  Q  L  K  G  M  K  P  L  :  E  P  P  T  R  P  K  S  N  E  S  T  E  I  R  S  Y  Q  L  W  R  V  S  G  E  S  C  P  E  G  T  V  P  I  R  R  T  T  E  K  D  V  M  R  A  S  T  L  Q  R  F  G  K  K  I  I  R  G  V  R  R  D  T  M  S  N  D  H  E  :  H  A  I  A  F  V  N  G  E  E  Y  Y  G  A  K  A  S  I  S  V  W  T  P  K  V  T  D  Q  Y  E  F  S  L  S  Q  L  W   </first_frame>
            <second_frame>  V  V  V  I  L  S  H  F  Q  S  F  F  H  L  L  V  S  C  F  L  L  L  H  L  L  L  S  S  Q  I  Q  L  Y  N  I  Q  T  K  L  L  N  Q  S  K  S  *  S  N  S  R  D  *  G  L  I  S  R  T  S  I  S  Q  Q  L  R  Q  F  R :   V  Q  M  E  I  *  *  I  V  Y  Y  L  I  F  N  Q  L  L  I  I  L  N  S  K  E  *  S  H  W :   N  L  Q  L  G  L  N  R  M  N  Q  Q  K  L  G  A  I  S  C  G  E  F  Q  E  N  R  A  P  K  G  Q  F  Q  *  E  E  L  Q  R  K  M  L  *  E  L  V  L  Y  K  D  L  E  K  K  L  *  E  A  *  G  A  T  Q  *  A  M  I  M  S :   M  Q  *  H  L  *  M  V  K  N  I  M  V  Q  R  L  V  L  V  Y  G  H  Q  K  *  Q  T  N  M  N  S  V  C  H  N  Y  G  </second_frame>
            <third_frame>   *  *  *  F  *  V  I  F  N  H  F  F  I  C  W  F  L  V  S  C  F  Y  I  C  Y  C  H  L  R  S  N  C  T  T  F  K  P  N  F  *  T  K  A  R  V  D  Q  T  Q  E  I  K  D  L  S  Q  E  H  Q  *  A  S  S  *  D  N  S   : E  F  R  W  R  S  N  R  L  C  I  I  S  S  S  T  S  F  *  S  S  S  T  Q  R  N  E  A  I   : G  T  S  N  *  A  *  I  E  *  I  N  R  N  *  E  L  S  V  V  E  S  F  R  R  I  V  P  R  R  D  S  S  N  K  K  N  Y  R  E  R  C  Y  E  S  *  Y  F  T  K  I  W  K  K  N  Y  K  R  R  K  A  R  H  N  E  Q  *  S  *   : A  C  N  S  I  C  E  W  *  R  I  L  W  C  K  G  *  Y  *  C  M  D  T  K  S  N  R  P  I  *  I  Q  F  V  T  T  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122372" stop="122575"/>
                    <exon start="122683" stop="122769"/>
                    <exon start="122934" stop="123140"/>
                    <exon start="123230" stop="123340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSNSKSFSIIFSFVGFLFLASTFATVISDPTVQHSNQTFKPKQELIKLKRLRTYLKNINKPAVKTIQSSDGDLIDCVLSHLQPAFDHPQLKGMKPLEPPTRPKSNESTEIRSYQLWRVSGESCPEGTVPIRRTTEKDVMRASTLQRFGKKIIRGVRRDTMSNDHEHAIAFVNGEEYYGAKASISVWTPKVTDQYEFSLSQLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="125604" PGL_stop="127180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125604" e_stop="125780"/>
            <exon e_start="126040" e_stop="126105"/>
            <exon e_start="126226" e_stop="126372"/>
            <exon e_start="126655" e_stop="126768"/>
            <exon e_start="126925" e_stop="127014"/>
            <exon e_start="127093" e_stop="127180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.657" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125604" e_stop="125780" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="125781" i_stop="126039" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126040" e_stop="126105" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="126106" i_stop="126225" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126226" e_stop="126372" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.892">
            <gDNA_intron_boundary i_start="126373" i_stop="126654" i_length="282"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126655" e_stop="126768" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.856" acc_prob="0.657">
            <gDNA_intron_boundary i_start="126769" i_stop="126924" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126925" e_stop="127014" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="127093" e_stop="127180" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125604" stop="125780"/>
              <exon start="126040" stop="126105"/>
              <exon start="126226" stop="126372"/>
              <exon start="126655" stop="126768"/>
              <exon start="126925" stop="127014"/>
              <exon start="127093" stop="127158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125605" stop="125780"/>
              <exon start="126040" stop="126105"/>
              <exon start="126226" stop="126372"/>
              <exon start="126655" stop="126768"/>
              <exon start="126925" stop="127014"/>
              <exon start="127093" stop="127180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125605" stop="125780"/>
              <exon start="126040" stop="126105"/>
              <exon start="126226" stop="126372"/>
              <exon start="126655" stop="126709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG : AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG : TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG : CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG : GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT : TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGAC</gDNA_template>
            <first_frame> K  R  C  R  M  E  Q  Q  Q  *  L  Y  E  K  K  W  S  N  L  G  *  N  V  T  G  I  Y  K  F  N  N  R  V  *  M  Q  A  L  S  L  F  G  N  L  W  I  Q  R  R  P  K  L  D  K  P  F  N  F  K  :  K  N  L  G  N  *  K  L  S  L  E  R  Q  K  I  I  *  *  K  H  L  Q  :  S  R  P  E  K  R  Q  R  G  *  K  *  L  N  *  *  L  L  P  M  L  E  W  K  S  L  E  G  S  W  K  I  K  G  S  G  N  M  N  I  P  P  *  Y  L  N  K  M  M  :  L  W  K  H  L  K  K  I  L  T  R  T  V  D  I  E  R  Q  *  R  R  L  L  G  G  T  I  R  C  L  V  Y  V  L  N  V  A  L  :  E  *  N  S  S  L  P  I  *  M  R  I  I  Q  M  M  S  T  L  L  L  F  V  V  R  M  M  H  I  L  :  *  L  I  V  I  H  S  *  M  T  Q  K  N  *  L  L  S  *  I  K  A  M  E  C  S  S  L  S  G  </first_frame>
            <second_frame>  R  D  A  E  W  S  S  S  S  N  C  T  R  K  N  G  A  T  *  V  K  M  *  Q  G  F  T  N  S  T  T  E  Y  R  C  R  R  Y  L  F  L  E  I  F  G  F  N  E  D  P  S  S  T  N  P  S  I  S  R :   K  T  W  E  I  E  N  *  A  *  R  G  R  R  *  F  S  K  S  T  C  S :   Q  D  P  K  R  G  K  E  D  K  N  S  *  T  N  S  Y  Y  Q  C  *  S  G  R  A  *  R  G  H  G  R  *  K  G  Q  E  T  *  I  F  R  P  N  I  S  T  R  *  C :   S  G  S  T  *  R  K  S  *  P  E  Q  W  T  *  R  G  N  R  G  G  Y  W  V  V  Q  *  G  A  W  F  T  Y  *  M  W  P  W :   S  K  I  H  L  Y  Q  Y  K  C  E  *  S  R  *  *  V  L  F  Y  C  S  S  *  E  *  C  T  Y  F :   D  *  L  *  S  T  A  E  *  R  K  R  T  D  Y  *  V  K  *  K  Q  W  N  V  Q  V  C  Q  D </second_frame>
            <third_frame>   E  M  Q  N  G  A  A  A  V  T  V  R  E  K  M  E  Q  L  R  L  K  C  N  R  D  L  Q  I  Q  Q  Q  S  I  D  A  G  A  I  S  F  W  K  S  L  D  S  T  K  T  Q  A  R  Q  T  L  Q  F  Q   : E  K  L  G  K  L  K  T  E  L  R  E  A  E  D  N  L  V  K  A  L  A   : V  K  T  R  K  E  A  K  R  I  K  I  A  E  L  I  A  T  T  N  A  R  V  E  E  L  R  G  V  M  E  D  K  R  V  R  K  H  E  Y  S  A  L  I  S  Q  Q  D  D   : A  L  E  A  L  E  E  N  L  N  Q  N  S  G  H  R  E  A  I  E  E  A  T  G  W  Y  N  K  V  L  G  L  R  I  E  C  G  L   : G  V  K  F  I  F  T  N  I  N  A  N  N  P  D  D  E  Y  S  F  T  V  R  R  E  N  D  A  H  T   : L  I  D  C  D  P  Q  L  N  D  A  K  E  L  I  I  E  L  N  K  S  N  G  M  F  K  F  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125606" stop="125780"/>
                    <exon start="126040" stop="126105"/>
                    <exon start="126226" stop="126372"/>
                    <exon start="126655" stop="126768"/>
                    <exon start="126925" stop="127014"/>
                    <exon start="127093" stop="127178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQNGAAAVTVREKMEQLRLKCNRDLQIQQQSIDAGAISFWKSLDSTKTQARQTLQFQEKLGKLKTELREAEDNLVKALAVKTRKEAKRIKIAELIATTNARVEELRGVMEDKRVRKHEYSALISQQDDALEALEENLNQNSGHREAIEEATGWYNKVLGLRIECGLGVKFIFTNINANNPDDEYSFTVRRENDAHTLIDCDPQLNDAKELIIELNKSNGMFKFVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="127456" PGL_stop="129031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127456" e_stop="127664"/>
            <exon e_start="128550" e_stop="128951"/>
            <exon e_start="129024" e_stop="129031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.438" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.998"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="127456" e_stop="127664" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.438">
            <gDNA_intron_boundary i_start="127665" i_stop="128549" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="128550" e_stop="128951" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="128952" i_stop="129023" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="129024" e_stop="129031" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127456" stop="127664"/>
              <exon start="128550" stop="128951"/>
              <exon start="129024" stop="129031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127563" stop="127664"/>
              <exon start="128550" stop="128891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATCAAGATACTTCAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG : GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTATA : AACAGAGA</gDNA_template>
            <first_frame> K  I  K  I  L  Q  W  S  L  C  L  R  *  C  R  P  S  Q  L  L  V  E  M  N  L  H  P  R  K  R  S  L  S  L  M  N  I  R  E  L  P  G  S  L  P  L  V  K  G  I  G  Q  P  F  S  L  L  Y  L  H  Y  L  F  A  D  L  L  V  L  R :   S  I  N  D  N  Y  Q  H  F  F  F  I  W  I  C  *  R  T  F  L  K  L  I  S  Q  H  I  F  S  I  G  E  H  *  L  A  N  T  P  S  S  V  Y  V  Y  Y  F  P  L  *  F  V  *  K  M  R  P  *  Y  I  *  *  I  F  N  S  N  I  I  M  *  E  N  P  L  *  E  *  H  D  M  F  K  T  *  D  S  V  D  I  F  S  M  L  Y  T  P  L  V  H  D  Q  F  R  S  P  F  Y  I  L  I  L  D  F  C  *  K  Y  I  V  T  A  F  E  L  S  I  P  S  S  L  L  L  * :   T  E  </first_frame>
            <second_frame>  R  S  R  Y  F  N  G  L  Y  A  Y  G  D  V  V  H  L  N  Y  *  *  R  *  I  F  T  P  E  S  G  A  S  V  *  *  I  *  E  S  F  Q  E  A  C  P  W  *  K  G  *  V  S  H  S  L  S  C  I  C  I  I  S  S  Q  I  S  S  F  *   : G  Q  *  M  I  I  I  S  T  S  F  S  S  G  F  V  E  E  P  S  *  S  *  S  V  S  I  Y  S  Q  L  A  S  T  D  *  Q  I  L  P  L  Q  F  M  Y  I  I  F  L  Y  S  L  S  E  K  C  D  L  N  I  F  S  K  F  L  I  L  T  S  S  C  R  K  I  P  C  R  N  D  M  T  C  L  R  L  E  I  Q  *  I  F  L  V  C  Y  I  H  L  *  F  T  T  N  L  E  V  L  F  I  F  L  Y  L  I  F  A  K  S  I  S  L  Q  L  L  N  Y  Q  F  H  P  P  Y  C  Y   : K  Q  R </second_frame>
            <third_frame>   D  Q  D  T  S  M  V  S  M  P  T  V  M  S  S  I  S  I  I  S  R  D  E  S  S  P  Q  K  A  E  P  Q  S  D  E  Y  K  R  A  S  R  K  L  A  L  G  K  R  D  R  S  A  I  L  S  P  V  S  A  L  S  L  R  R  S  P  R  F  K  :  V  N  K  *  *  L  S  A  L  L  F  H  L  D  L  L  K  N  L  L  E  V  D  Q  S  A  Y  I  L  N  W  R  A  L  T  S  K  Y  S  L  F  S  L  C  I  L  F  S  F  I  V  C  L  K  N  A  T  L  I  Y  L  V  N  F  *  F  *  H  H  H  V  G  K  S  L  V  G  M  T  *  H  V  *  D  L  R  F  S  R  Y  F  *  Y  V  I  Y  T  F  S  S  R  P  I  *  K  S  F  L  Y  S  Y  T  *  F  L  L  K  V  Y  R  Y  S  F  *  I  I  N  S  I  L  L  T  V  I  :  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127495" stop="127664"/>
                    <exon start="128550" stop="128598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRPSQLLVEMNLHPRKRSLSLMNIRELPGSLPLVKGIGQPFSLLYLHYLFADLLVLRSINDNYQHFFFIWIC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127458" stop="127664"/>
                    <exon start="128550" stop="128561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQDTSMVSMPTVMSSISIISRDESSPQKAEPQSDEYKRASRKLALGKRDRSAILSPVSALSLRRSPRFKVNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="136706" PGL_stop="135669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136706" e_stop="135669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136706" e_stop="135669" e_length="1038"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136706" stop="136070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136706" stop="136194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136199" stop="135669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAATAGGA</gDNA_template>
            <first_frame> P  S  G  D  Y  N  S  S  R  F  I  S  F  F  S  F  Y  F  P  S  S  T  I  M  S  F  *  S  A  S  L  H  N  K  A  T  I  F  P  F  W  *  V  S  K  G  K  R  K  R  T  R  I  K  S  W  Q  Y  L  A  T  W  S  G  *  N  E  H  R  N  V  Q  K  I  P  L  A  E  H  Y  P  V  A  S  A  V  N  L  F  S  C  D  C  I  Q  L  R  P  L  N  H  L  G  L  L  F  K  T  I  K  H  R  A  A  N  A  K  L  S  E  *  L  K  E  R  E  Q  S  *  S  I  D  S  K  T  C  *  M  H  H  L  K  *  I  *  A  L  F  A  L  C  T  *  N  L  I  G  P  *  S  Y  F  A  L  F  A  F  D  N  T  V  V  R  L  S  R  K  L  M  T  L  L  I  D  V  R  L  V  W  W  P  R  L  Y  K  L  L  W  C  G  L  W  *  D  I  Q  S  I  G  S  F  L  Q  L  L  D  W  C  F  P  L  L  P  H  L  M  N  G  I  F  I  G  L  T  L  T  I  P  F  L  M  V  Y  *  L  *  L  F  I  W  S  N  Q  Y  K  K  N  A  M  G  T  R  V  G  V  *  R  N  *  E  I  H  S  I  *  S  G  H  G  H  G  L  G  A  T  G  G  K  I  G  H  *  T  T  T  I  I  N  L  M  H  F  V  G  R  I  N  E  *  R  T  *  L  L  V  T  L  K  F  F  F  F  F  S  K  F  V  I  T  L  H  Y  *  H  L  R  M  N  L  F  F  L  L  K  I  G </first_frame>
            <second_frame>  L  L  E  T  I  I  L  A  D  L  F  P  S  L  V  F  T  S  L  H  Q  L  L  *  A  S  N  L  L  A  Y  I  T  K  L  Q  Y  F  L  F  G  K  F  Q  K  A  K  G  K  G  L  E  *  N  L  G  N  I  *  L  L  G  Q  V  R  M  N  I  E  M  Y  K  R  Y  L  L  Q  N  I  I  Q  L  P  Q  Q  S  I  C  F  H  V  I  V  F  S  *  D  P  *  I  T  *  D  S  F  L  R  P  *  N  I  E  Q  Q  M  Q  N  C  R  S  N  *  K  N  E  N  K  A  D  P  L  I  V  R  L  A  R  C  T  I  *  N  K  F  E  L  Y  L  R  F  V  L  K  I  S  L  D  L  R  A  I  L  R  F  S  L  L  I  T  L  L  S  G  *  V  E  N  *  *  L  S  *  S  M  *  G  S  F  G  G  Q  G  Y  T  N  S  Y  G  V  D  S  G  E  T  F  N  Q  L  V  H  S  Y  N  C  *  T  G  V  F  P  C  Y  L  I  L  *  M  A  Y  S  L  V  *  H  *  Q  Y  L  S  *  W  F  I  D  S  D  C  L  Y  G  A  T  N  T  R  K  T  L  W  G  L  G  L  E  C  S  V  T  K  K  F  I  P  F  R  A  G  T  G  T  G  *  G  L  R  V  G  R  L  V  I  R  P  R  L  S  S  T  *  C  T  L  S  V  G  L  M  S  E  G  P  N  Y  *  *  L  *  N  S  F  F  S  F  R  N  L  *  L  P  F  I  I  N  I  C  G  *  I  Y  F  S  Y  S  K  *   </second_frame>
            <third_frame>   F  W  R  L  *  F  *  Q  I  Y  F  L  L  *  F  L  L  P  F  I  N  Y  Y  E  L  L  I  C  *  L  T  *  Q  S  Y  N  I  S  F  L  V  S  F  K  R  Q  K  E  K  D  *  N  K  I  L  A  I  F  S  Y  L  V  R  L  E  *  T  *  K  C  T  K  D  T  S  C  R  T  L  S  S  C  L  S  S  Q  S  V  F  M  *  L  Y  S  V  E  T  L  K  S  L  R  T  P  F  *  D  H  K  T  *  S  S  K  C  K  T  V  G  V  T  K  R  T  R  T  K  L  I  H  *  *  *  D  L  L  D  A  P  F  E  I  N  L  S  F  I  C  A  L  Y  L  K  S  H  W  T  L  E  L  F  C  A  F  R  F  *  *  H  C  C  Q  V  K  *  K  I  D  D  S  L  D  R  C  K  A  R  L  V  A  K  V  I  Q  T  L  M  V  W  T  L  V  R  H  S  I  N  W  F  I  P  T  T  V  R  L  V  F  S  L  V  T  S  S  Y  E  W  H  I  H  W  S  D  I  N  N  T  F  L  N  G  L  L  T  L  T  V  Y  M  E  Q  P  I  Q  E  K  R  Y  G  D  S  G  W  S  V  A  *  L  R  N  S  F  H  L  E  R  A  R  A  R  A  R  G  Y  G  W  E  D  W  S  L  D  H  D  Y  H  Q  L  D  A  L  C  R  S  D  *  *  V  K  D  L  I  I  S  D  F  K  I  L  F  F  L  F  E  I  C  N  Y  P  S  L  L  T  F  A  D  E  F  I  F  L  T  Q  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136179" stop="135904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIDDSLDRCKARLVAKVIQTLMVWTLVRHSINWFIPTTVRLVFSLVTSSYEWHIHWSDINNTFLNGLLTLTVYMEQPIQEKRYGDSGWSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="146492" PGL_stop="145281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146492" e_stop="146162"/>
            <exon e_start="145482" e_stop="145281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146492" e_stop="146162" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.906">
            <gDNA_intron_boundary i_start="146161" i_stop="145483" i_length="679"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="145482" e_stop="145281" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146492" stop="146162"/>
              <exon start="145482" stop="145281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146492" stop="146162"/>
              <exon start="145482" stop="145288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146492" stop="146162"/>
              <exon start="145482" stop="145340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAACACCCTAACAGGGTGAACTGTAATTAATTGTGTCATCACAGGCATATACAGGGAAGATCTGTTGATGCATCACTTTCGCCTCCCAAAGAATTGCTTGTGATCCTTTTGTCCCAACAGGCGGTTAAGTTCCACTCAACTGGATACAAGTTTCAAGGAGAAGTTTGAAATCAAGGTGATAGGAGAAACATCTCTTTCGCCTCCCAAAGAATTGCTTGTGATCTTTTTGCCCCAATAGCTAAAGTTGGACTCAAGTGATGAAAGTTTCAAGGAGAAGTTCAAAATCAAGGTGATAGGAAGTTTTTCTGGGTAATTCTTGATACCTGAAG : ATTTGGGTATGAAATCAAGGTCTTCTTTGAAGTATCTACATCTTCTGTCCATAGAAATCTCCTACATAGGCTCTCAATGCAAGCTTTCTTTGGCAACTGAGACCAAAATTACTCTACTTTTATTGCATTTGGACTTTATTTTCAATTTGCTGGTTCTGAAAGTTACGGCTACTGAGTAGTTTCTAGCCTTGAAATCTTAATT</gDNA_template>
            <first_frame> P  N  T  L  T  G  *  T  V  I  N  C  V  I  T  G  I  Y  R  E  D  L  L  M  H  H  F  R  L  P  K  N  C  L  *  S  F  C  P  N  R  R  L  S  S  T  Q  L  D  T  S  F  K  E  K  F  E  I  K  V  I  G  E  T  S  L  S  P  P  K  E  L  L  V  I  F  L  P  Q  *  L  K  L  D  S  S  D  E  S  F  K  E  K  F  K  I  K  V  I  G  S  F  S  G  *  F  L  I  P  E   : D  L  G  M  K  S  R  S  S  L  K  Y  L  H  L  L  S  I  E  I  S  Y  I  G  S  Q  C  K  L  S  L  A  T  E  T  K  I  T  L  L  L  L  H  L  D  F  I  F  N  L  L  V  L  K  V  T  A  T  E  *  F  L  A  L  K  S  *   </first_frame>
            <second_frame>  P  T  P  *  Q  G  E  L  *  L  I  V  S  S  Q  A  Y  T  G  K  I  C  *  C  I  T  F  A  S  Q  R  I  A  C  D  P  F  V  P  T  G  G  *  V  P  L  N  W  I  Q  V  S  R  R  S  L  K  S  R  *  *  E  K  H  L  F  R  L  P  K  N  C  L  *  S  F  C  P  N  S  *  S  W  T  Q  V  M  K  V  S  R  R  S  S  K  S  R  *  *  E  V  F  L  G  N  S  *  Y  L  K  :  I  W  V  *  N  Q  G  L  L  *  S  I  Y  I  F  C  P  *  K  S  P  T  *  A  L  N  A  S  F  L  W  Q  L  R  P  K  L  L  Y  F  Y  C  I  W  T  L  F  S  I  C  W  F  *  K  L  R  L  L  S  S  F  *  P  *  N  L  N  </second_frame>
            <third_frame>   Q  H  P  N  R  V  N  C  N  *  L  C  H  H  R  H  I  Q  G  R  S  V  D  A  S  L  S  P  P  K  E  L  L  V  I  L  L  S  Q  Q  A  V  K  F  H  S  T  G  Y  K  F  Q  G  E  V  *  N  Q  G  D  R  R  N  I  S  F  A  S  Q  R  I  A  C  D  L  F  A  P  I  A  K  V  G  L  K  *  *  K  F  Q  G  E  V  Q  N  Q  G  D  R  K  F  F  W  V  I  L  D  T  *  R :   F  G  Y  E  I  K  V  F  F  E  V  S  T  S  S  V  H  R  N  L  L  H  R  L  S  M  Q  A  F  F  G  N  *  D  Q  N  Y  S  T  F  I  A  F  G  L  Y  F  Q  F  A  G  S  E  S  Y  G  Y  *  V  V  S  S  L  E  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146177" stop="146162"/>
                    <exon start="145482" stop="145304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIPEDLGMKSRSSLKYLHLLSIEISYIGSQCKLSLATETKITLLLLHLDFIFNLLVLKVTATE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 305 chains have been computed
$ 
$ memory statistics:
$ 1059104 bytes spliced alignments in total
$ 152 spliced alignments have been stored
$ 6967 bytes was the average size of a spliced alignment
$ 44416 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1645 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 373 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:45:37
-->
